621 lines
18 KiB
XML
621 lines
18 KiB
XML
<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://maven.apache.org/POM/4.0.0"
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xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>7.1.4-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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<artifactId>hapi-fhir-jpaserver-base</artifactId>
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<packaging>jar</packaging>
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<name>HAPI FHIR JPA Server</name>
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<dependencies>
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<dependency>
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<groupId>com.fasterxml.woodstox</groupId>
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<artifactId>woodstox-core</artifactId>
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</dependency>
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<dependency>
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<groupId>org.apache.commons</groupId>
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<artifactId>commons-csv</artifactId>
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</dependency>
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<dependency>
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<groupId>co.elastic.apm</groupId>
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<artifactId>apm-agent-api</artifactId>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-base</artifactId>
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<version>${project.version}</version>
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<exclusions>
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<exclusion>
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<artifactId>commons-logging</artifactId>
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<groupId>commons-logging</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-client</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-server</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-server-mdm</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-storage</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-jpaserver-subscription</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-jpaserver-searchparam</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-sql-migrate</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-jpaserver-model</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-dstu2</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-dstu3</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-r4</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-r4b</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-r5</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-r4</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-r4b</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-validation-resources-r5</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-storage-batch2</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-storage-batch2-jobs</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>org.apache.commons</groupId>
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<artifactId>commons-dbcp2</artifactId>
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<exclusions>
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<exclusion>
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<groupId>commons-logging</groupId>
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<artifactId>commons-logging</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>net.ttddyy</groupId>
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<artifactId>datasource-proxy</artifactId>
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</dependency>
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<dependency>
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<groupId>ch.qos.logback</groupId>
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<artifactId>logback-classic</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.awaitility</groupId>
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<artifactId>awaitility</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.javassist</groupId>
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<artifactId>javassist</artifactId>
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</dependency>
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<!-- GraphQL -->
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<dependency>
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<groupId>com.graphql-java</groupId>
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<artifactId>graphql-java</artifactId>
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</dependency>
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<!-- SQL Builder -->
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<dependency>
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<groupId>com.healthmarketscience.sqlbuilder</groupId>
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<artifactId>sqlbuilder</artifactId>
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</dependency>
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<!-- Jackson -->
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<dependency>
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<groupId>com.fasterxml.jackson.core</groupId>
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<artifactId>jackson-annotations</artifactId>
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</dependency>
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<dependency>
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<groupId>com.fasterxml.jackson.core</groupId>
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<artifactId>jackson-databind</artifactId>
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</dependency>
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<dependency>
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<groupId>org.springdoc</groupId>
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<artifactId>springdoc-openapi-starter-webmvc-ui</artifactId>
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</dependency>
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<dependency>
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<groupId>org.thymeleaf</groupId>
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<artifactId>thymeleaf</artifactId>
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</dependency>
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<dependency>
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<groupId>org.thymeleaf</groupId>
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<artifactId>thymeleaf-spring6</artifactId>
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</dependency>
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|
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<!-- For UCUM: TODO we should replace this with org.fhir UCUM -->
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<dependency>
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<groupId>org.jscience</groupId>
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<artifactId>jscience</artifactId>
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<exclusions>
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<exclusion>
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<groupId>org.javolution</groupId>
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<artifactId>javolution</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<!-- Patch Dependencies -->
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<dependency>
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<groupId>io.dogote</groupId>
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<artifactId>json-patch</artifactId>
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</dependency>
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<dependency>
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<groupId>com.github.dnault</groupId>
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<artifactId>xml-patch</artifactId>
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</dependency>
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<!--
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Dependencies that need to be added since JDK9
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-->
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<dependency>
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<groupId>jakarta.servlet</groupId>
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<artifactId>jakarta.servlet-api</artifactId>
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<scope>provided</scope>
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</dependency>
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<!-- Spring -->
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-core</artifactId>
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<exclusions>
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<exclusion>
|
|
<artifactId>commons-logging</artifactId>
|
|
<groupId>commons-logging</groupId>
|
|
</exclusion>
|
|
</exclusions>
|
|
</dependency>
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|
<dependency>
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<groupId>org.springframework.data</groupId>
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<artifactId>spring-data-jpa</artifactId>
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<exclusions>
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<exclusion>
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<artifactId>spring-aop</artifactId>
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<groupId>org.springframework</groupId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
|
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<groupId>org.springframework.data</groupId>
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<artifactId>spring-data-commons</artifactId>
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</dependency>
|
|
<dependency>
|
|
<groupId>org.springframework</groupId>
|
|
<artifactId>spring-messaging</artifactId>
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</dependency>
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<dependency>
|
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<groupId>org.springframework</groupId>
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<artifactId>spring-tx</artifactId>
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|
</dependency>
|
|
<dependency>
|
|
<groupId>org.springframework</groupId>
|
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<artifactId>spring-context-support</artifactId>
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</dependency>
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<dependency>
|
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<groupId>org.springframework</groupId>
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<artifactId>spring-webmvc</artifactId>
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</dependency>
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<dependency>
|
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<groupId>org.springframework</groupId>
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<artifactId>spring-websocket</artifactId>
|
|
</dependency>
|
|
<dependency>
|
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<groupId>org.glassfish</groupId>
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<artifactId>jakarta.el</artifactId>
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</dependency>
|
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|
|
<!-- Note that we need this dependency to send log4j logging requests to slf4j -->
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<dependency>
|
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<groupId>org.apache.logging.log4j</groupId>
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<artifactId>log4j-to-slf4j</artifactId>
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</dependency>
|
|
<!-- Hibernate Search -->
|
|
<dependency>
|
|
<groupId>co.elastic.clients</groupId>
|
|
<artifactId>elasticsearch-java</artifactId>
|
|
<exclusions>
|
|
<exclusion>
|
|
<groupId>jakarta.json</groupId>
|
|
<artifactId>jakarta.json-api</artifactId>
|
|
</exclusion>
|
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</exclusions>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.hibernate.search</groupId>
|
|
<artifactId>hibernate-search-backend-elasticsearch</artifactId>
|
|
</dependency>
|
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<dependency>
|
|
<groupId>org.hibernate.search</groupId>
|
|
<artifactId>hibernate-search-backend-lucene</artifactId>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.hibernate.search</groupId>
|
|
<artifactId>hibernate-search-backend-elasticsearch-aws</artifactId>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.hibernate.orm</groupId>
|
|
<artifactId>hibernate-envers</artifactId>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.springframework.data</groupId>
|
|
<artifactId>spring-data-envers</artifactId>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.apache.lucene</groupId>
|
|
<artifactId>lucene-analysis-phonetic</artifactId>
|
|
</dependency>
|
|
<!-- Misc -->
|
|
<dependency>
|
|
<groupId>com.google.guava</groupId>
|
|
<artifactId>guava</artifactId>
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</dependency>
|
|
<dependency>
|
|
<groupId>jakarta.annotation</groupId>
|
|
<artifactId>jakarta.annotation-api</artifactId>
|
|
</dependency>
|
|
|
|
<dependency>
|
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-server-openapi</artifactId>
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<version>${project.version}</version>
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<scope>test</scope>
|
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</dependency>
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|
|
|
<dependency>
|
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<groupId>ca.uhn.hapi.fhir</groupId>
|
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<artifactId>hapi-fhir-caching-caffeine</artifactId>
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<version>${project.version}</version>
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</dependency>
|
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<dependency>
|
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-caching-testing</artifactId>
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<version>${project.version}</version>
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<scope>test</scope>
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</dependency>
|
|
<dependency>
|
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-test-utilities</artifactId>
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<version>${project.version}</version>
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|
<scope>test</scope>
|
|
</dependency>
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|
|
|
<dependency>
|
|
<groupId>org.jetbrains</groupId>
|
|
<artifactId>annotations</artifactId>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.apache.jena</groupId>
|
|
<artifactId>jena-arq</artifactId>
|
|
<scope>compile</scope>
|
|
<exclusions>
|
|
<exclusion>
|
|
<groupId>javax.annotation</groupId>
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<artifactId>javax.annotation-api</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
|
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<dependency>
|
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<groupId>org.apache.jena</groupId>
|
|
<artifactId>jena-core</artifactId>
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<scope>compile</scope>
|
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</dependency>
|
|
<dependency>
|
|
<groupId>com.jayway.jsonpath</groupId>
|
|
<artifactId>json-path-assert</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>com.jayway.jsonpath</groupId>
|
|
<artifactId>json-path</artifactId>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>org.exparity</groupId>
|
|
<artifactId>hamcrest-date</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
</dependencies>
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|
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<build>
|
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<plugins>
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<!-- Generate the Spring ContextCfg classes for loading JPA DAOs and RPs -->
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<plugin>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-tinder-plugin</artifactId>
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<version>${project.version}</version>
|
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<executions>
|
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<execution>
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<id>build_dstu2</id>
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<goals>
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<goal>generate-jparest-server</goal>
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</goals>
|
|
<configuration>
|
|
<version>dstu2</version>
|
|
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
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<packageBase>ca.uhn.fhir.jpa.rp.dstu2</packageBase>
|
|
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu2.xml
|
|
</targetResourceSpringBeansFile>
|
|
<baseResourceNames/>
|
|
<excludeResourceNames>
|
|
<!-- <excludeResourceName>OperationDefinition</excludeResourceName> <excludeResourceName>OperationOutcome</excludeResourceName> -->
|
|
</excludeResourceNames>
|
|
</configuration>
|
|
</execution>
|
|
<execution>
|
|
<id>build_dstu3</id>
|
|
<goals>
|
|
<goal>generate-jparest-server</goal>
|
|
</goals>
|
|
<configuration>
|
|
<version>dstu3</version>
|
|
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
|
|
<packageBase>ca.uhn.fhir.jpa.rp.dstu3</packageBase>
|
|
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu3.xml
|
|
</targetResourceSpringBeansFile>
|
|
<baseResourceNames></baseResourceNames>
|
|
<excludeResourceNames>
|
|
</excludeResourceNames>
|
|
</configuration>
|
|
</execution>
|
|
<execution>
|
|
<id>build_r4</id>
|
|
<goals>
|
|
<goal>generate-jparest-server</goal>
|
|
</goals>
|
|
<configuration>
|
|
<version>r4</version>
|
|
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
|
|
<packageBase>ca.uhn.fhir.jpa.rp.r4</packageBase>
|
|
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-r4.xml
|
|
</targetResourceSpringBeansFile>
|
|
<baseResourceNames></baseResourceNames>
|
|
<excludeResourceNames>
|
|
</excludeResourceNames>
|
|
</configuration>
|
|
</execution>
|
|
<execution>
|
|
<id>build_r4b</id>
|
|
<goals>
|
|
<goal>generate-jparest-server</goal>
|
|
</goals>
|
|
<configuration>
|
|
<version>r4b</version>
|
|
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
|
|
<packageBase>ca.uhn.fhir.jpa.rp.r4b</packageBase>
|
|
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-r4b.xml
|
|
</targetResourceSpringBeansFile>
|
|
<baseResourceNames></baseResourceNames>
|
|
<excludeResourceNames>
|
|
</excludeResourceNames>
|
|
</configuration>
|
|
</execution>
|
|
<execution>
|
|
<id>build_r5</id>
|
|
<goals>
|
|
<goal>generate-jparest-server</goal>
|
|
</goals>
|
|
<configuration>
|
|
<version>r5</version>
|
|
<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
|
|
<packageBase>ca.uhn.fhir.jpa.rp.r5</packageBase>
|
|
<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-r5.xml
|
|
</targetResourceSpringBeansFile>
|
|
<baseResourceNames></baseResourceNames>
|
|
</configuration>
|
|
</execution>
|
|
</executions>
|
|
|
|
<dependencies>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-structures-dstu2</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-structures-dstu3</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-structures-r4</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
</dependencies>
|
|
</plugin>
|
|
<!-- Generate the DDL schema files -->
|
|
<plugin>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-tinder-plugin</artifactId>
|
|
<version>${project.version}</version>
|
|
<executions>
|
|
<execution>
|
|
<goals>
|
|
<goal>generate-ddl</goal>
|
|
</goals>
|
|
</execution>
|
|
</executions>
|
|
<configuration>
|
|
<packageNames>
|
|
<packageName>ca.uhn.fhir.jpa.entity</packageName>
|
|
<packageName>ca.uhn.fhir.jpa.model.entity</packageName>
|
|
</packageNames>
|
|
<dialects>
|
|
<dialect>
|
|
<className>ca.uhn.fhir.jpa.model.dialect.HapiFhirDerbyDialect</className>
|
|
<targetFileName>derby.sql</targetFileName>
|
|
</dialect>
|
|
<dialect>
|
|
<className>ca.uhn.fhir.jpa.model.dialect.HapiFhirMySQLDialect</className>
|
|
<targetFileName>mysql.sql</targetFileName>
|
|
</dialect>
|
|
<dialect>
|
|
<className>ca.uhn.fhir.jpa.model.dialect.HapiFhirMariaDBDialect</className>
|
|
<targetFileName>mariadb.sql</targetFileName>
|
|
</dialect>
|
|
<dialect>
|
|
<className>ca.uhn.fhir.jpa.model.dialect.HapiFhirOracleDialect</className>
|
|
<targetFileName>oracle.sql</targetFileName>
|
|
</dialect>
|
|
<dialect>
|
|
<className>ca.uhn.fhir.jpa.model.dialect.HapiFhirSQLServerDialect</className>
|
|
<targetFileName>sqlserver.sql</targetFileName>
|
|
</dialect>
|
|
<dialect>
|
|
<className>ca.uhn.fhir.jpa.model.dialect.HapiFhirCockroachDialect</className>
|
|
<targetFileName>cockroachdb.sql</targetFileName>
|
|
</dialect>
|
|
<dialect>
|
|
<className>ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect</className>
|
|
<targetFileName>h2.sql</targetFileName>
|
|
</dialect>
|
|
<dialect>
|
|
<className>ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgresDialect</className>
|
|
<targetFileName>postgres.sql</targetFileName>
|
|
<appendFile>classpath:ca/uhn/fhir/jpa/docs/database/hapifhirpostgres94-init01.sql</appendFile>
|
|
</dialect>
|
|
</dialects>
|
|
<outputDirectory>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database</outputDirectory>
|
|
</configuration>
|
|
<dependencies>
|
|
<dependency>
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
<artifactId>hapi-fhir-jpaserver-model</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
</dependencies>
|
|
</plugin>
|
|
<plugin>
|
|
<groupId>org.codehaus.mojo</groupId>
|
|
<artifactId>build-helper-maven-plugin</artifactId>
|
|
<executions>
|
|
<execution>
|
|
<id>add-source</id>
|
|
<phase>generate-sources</phase>
|
|
<goals>
|
|
<goal>add-source</goal>
|
|
</goals>
|
|
<configuration>
|
|
<sources>
|
|
<source>target/generated-sources/tinder</source>
|
|
</sources>
|
|
</configuration>
|
|
</execution>
|
|
</executions>
|
|
</plugin>
|
|
</plugins>
|
|
<resources>
|
|
<resource>
|
|
<directory>${project.basedir}/src/main/resources</directory>
|
|
</resource>
|
|
<resource>
|
|
<directory>${project.basedir}/target/generated-resources/tinder</directory>
|
|
</resource>
|
|
</resources>
|
|
</build>
|
|
|
|
</project>
|