fix merge issues

This commit is contained in:
Grahame Grieve 2023-10-06 05:59:39 +03:00
parent c52d5a71b4
commit 0140fa1ad1
1 changed files with 2 additions and 55 deletions

View File

@ -10,33 +10,24 @@ import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.r4.context.SimpleWorkerContext; import org.hl7.fhir.r4.context.SimpleWorkerContext;
import org.hl7.fhir.r4.formats.IParser.OutputStyle; import org.hl7.fhir.r4.formats.IParser.OutputStyle;
import org.hl7.fhir.r4.formats.JsonParser; import org.hl7.fhir.r4.formats.JsonParser;
<<<<<<< HEAD
import org.hl7.fhir.r4.formats.XmlParser; import org.hl7.fhir.r4.formats.XmlParser;
=======
>>>>>>> master
import org.hl7.fhir.r4.model.Base; import org.hl7.fhir.r4.model.Base;
import org.hl7.fhir.r4.model.BooleanType; import org.hl7.fhir.r4.model.BooleanType;
import org.hl7.fhir.r4.model.Bundle; import org.hl7.fhir.r4.model.Bundle;
import org.hl7.fhir.r4.model.Bundle.BundleEntryComponent; import org.hl7.fhir.r4.model.Bundle.BundleEntryComponent;
import org.hl7.fhir.r4.model.CapabilityStatement; import org.hl7.fhir.r4.model.CapabilityStatement;
<<<<<<< HEAD
import org.hl7.fhir.r4.model.CodeSystem; import org.hl7.fhir.r4.model.CodeSystem;
=======
>>>>>>> master
import org.hl7.fhir.r4.model.CodeType; import org.hl7.fhir.r4.model.CodeType;
import org.hl7.fhir.r4.model.CodeableConcept; import org.hl7.fhir.r4.model.CodeableConcept;
import org.hl7.fhir.r4.model.Coding; import org.hl7.fhir.r4.model.Coding;
import org.hl7.fhir.r4.model.Condition; import org.hl7.fhir.r4.model.Condition;
<<<<<<< HEAD
import org.hl7.fhir.r4.model.DateType; import org.hl7.fhir.r4.model.DateType;
import org.hl7.fhir.r4.model.HumanName; import org.hl7.fhir.r4.model.HumanName;
import org.hl7.fhir.r4.model.Immunization; import org.hl7.fhir.r4.model.Immunization;
import org.hl7.fhir.r4.model.Parameters; import org.hl7.fhir.r4.model.Parameters;
import org.hl7.fhir.r4.model.Parameters.ParametersParameterComponent; import org.hl7.fhir.r4.model.Parameters.ParametersParameterComponent;
=======
import org.hl7.fhir.r4.model.HumanName; import org.hl7.fhir.r4.model.HumanName;
import org.hl7.fhir.r4.model.Immunization; import org.hl7.fhir.r4.model.Immunization;
>>>>>>> master
import org.hl7.fhir.r4.model.Patient; import org.hl7.fhir.r4.model.Patient;
import org.hl7.fhir.r4.model.Period; import org.hl7.fhir.r4.model.Period;
import org.hl7.fhir.r4.model.Procedure; import org.hl7.fhir.r4.model.Procedure;
@ -79,11 +70,8 @@ public class CmdLineApp {
finished = true; finished = true;
} else if (p.length == 1 && p[0].equals("?")) { } else if (p.length == 1 && p[0].equals("?")) {
genMenu(); genMenu();
<<<<<<< HEAD
} else if (p.length == 1 && p[0].equals("?tx")) { } else if (p.length == 1 && p[0].equals("?tx")) {
genMenuTx(); genMenuTx();
=======
>>>>>>> master
} else if (p.length >= 1 && p[0].equals("c")) { } else if (p.length >= 1 && p[0].equals("c")) {
if (p.length == 1) { if (p.length == 1) {
connectToServer("http://hapi.fhir.org/baseR4"); connectToServer("http://hapi.fhir.org/baseR4");
@ -129,15 +117,10 @@ public class CmdLineApp {
select("Patient", p[1]); select("Patient", p[1]);
} else if (p.length == 3 && p[0].equals("e")) { } else if (p.length == 3 && p[0].equals("e")) {
edit(p[1], p[2]); edit(p[1], p[2]);
<<<<<<< HEAD
} else if (p.length > 3 && p[0].equals("tx")) { } else if (p.length > 3 && p[0].equals("tx")) {
tx(p); tx(p);
} else {
tx(p);
=======
} else { } else {
System.out.println("Command unknown or not understood: "+cmd); System.out.println("Command unknown or not understood: "+cmd);
>>>>>>> master
} }
} catch (Exception e) { } catch (Exception e) {
System.out.println("Error executing command "+p[0]+": "+e.getMessage()); System.out.println("Error executing command "+p[0]+": "+e.getMessage());
@ -147,7 +130,6 @@ public class CmdLineApp {
System.out.println("Finished!"); System.out.println("Finished!");
} }
<<<<<<< HEAD
private boolean tx(String[] p) throws IOException { private boolean tx(String[] p) throws IOException {
if (p[1].equals("l")) { if (p[1].equals("l")) {
if (p.length == 4) { if (p.length == 4) {
@ -190,10 +172,6 @@ public class CmdLineApp {
} }
private void getImmunizations() throws IOException { private void getImmunizations() throws IOException {
=======
private void getImmunizations() {
>>>>>>> master
Bundle bnd = client.search("Immunization", "?patient="+currentId); Bundle bnd = client.search("Immunization", "?patient="+currentId);
System.out.println(""+bnd.getTotal()+" Immunizations found. Printing "+bnd.getEntry().size()); System.out.println(""+bnd.getTotal()+" Immunizations found. Printing "+bnd.getEntry().size());
@ -203,11 +181,8 @@ public class CmdLineApp {
} }
} }
<<<<<<< HEAD
private void getProcedures() throws IOException { private void getProcedures() throws IOException {
=======
private void getProcedures() {
>>>>>>> master
Bundle bnd = client.search("Procedure", "?patient="+currentId); Bundle bnd = client.search("Procedure", "?patient="+currentId);
System.out.println(""+bnd.getTotal()+" Procedures found. Printing "+bnd.getEntry().size()); System.out.println(""+bnd.getTotal()+" Procedures found. Printing "+bnd.getEntry().size());
@ -218,11 +193,8 @@ public class CmdLineApp {
} }
} }
<<<<<<< HEAD
private void getConditions() throws IOException { private void getConditions() throws IOException {
=======
private void getConditions() {
>>>>>>> master
Bundle bnd = client.search("Condition", "?patient="+currentId); Bundle bnd = client.search("Condition", "?patient="+currentId);
System.out.println(""+bnd.getTotal()+" Conditions found. Printing "+bnd.getEntry().size()); System.out.println(""+bnd.getTotal()+" Conditions found. Printing "+bnd.getEntry().size());
@ -257,10 +229,7 @@ public class CmdLineApp {
case "boolean" : return new BooleanType(value); case "boolean" : return new BooleanType(value);
case "code" : return new CodeType(value); case "code" : return new CodeType(value);
case "string" : return new StringType(value); case "string" : return new StringType(value);
<<<<<<< HEAD
case "date" : return new DateType(value); case "date" : return new DateType(value);
=======
>>>>>>> master
} }
throw new FHIRException("Unhandled type "+p.getTypeCode()); throw new FHIRException("Unhandled type "+p.getTypeCode());
} }
@ -278,11 +247,7 @@ public class CmdLineApp {
System.out.println(new JsonParser().setOutputStyle(OutputStyle.PRETTY).composeString(currentResource)); System.out.println(new JsonParser().setOutputStyle(OutputStyle.PRETTY).composeString(currentResource));
} }
<<<<<<< HEAD
private void select(String type, String id) throws IOException { private void select(String type, String id) throws IOException {
=======
private void select(String type, String id) {
>>>>>>> master
if (type.equals("Patient")) { if (type.equals("Patient")) {
currentResource = client.fetchResource(Patient.class, id); currentResource = client.fetchResource(Patient.class, id);
} else if (type.equals("Immunization")) { } else if (type.equals("Immunization")) {
@ -298,12 +263,8 @@ public class CmdLineApp {
System.out.println("Resource = "+currentId+" "+summary(currentResource)); System.out.println("Resource = "+currentId+" "+summary(currentResource));
} }
<<<<<<< HEAD
private String summary(Resource r) throws IOException { private String summary(Resource r) throws IOException {
// return new XmlParser().composeString(r); // return new XmlParser().composeString(r);
=======
private String summary(Resource r) {
>>>>>>> master
if (r instanceof Patient) { if (r instanceof Patient) {
Patient pat = (Patient) r; Patient pat = (Patient) r;
return pat.getIdBase()+" "+pat.getGender()+" "+pat.getBirthDateElement().asStringValue()+" "+name(pat); return pat.getIdBase()+" "+pat.getGender()+" "+pat.getBirthDateElement().asStringValue()+" "+name(pat);
@ -366,11 +327,7 @@ public class CmdLineApp {
return ""; return "";
} }
<<<<<<< HEAD
private void search(String[] p) throws IOException { private void search(String[] p) throws IOException {
=======
private void search(String[] p) {
>>>>>>> master
if (client == null) { if (client == null) {
throw new FHIRException("Not connected to to a server"); throw new FHIRException("Not connected to to a server");
} }
@ -378,11 +335,7 @@ public class CmdLineApp {
if (p.length > 2) { if (p.length > 2) {
search = search +"&gender="+p[2]; search = search +"&gender="+p[2];
if (p.length > 3) { if (p.length > 3) {
<<<<<<< HEAD
search = search +"&birthdate="+p[3]; search = search +"&birthdate="+p[3];
=======
search = search +"&dob="+p[3];
>>>>>>> master
} }
} }
Bundle bnd = client.search("Patient", search); Bundle bnd = client.search("Patient", search);
@ -418,7 +371,6 @@ public class CmdLineApp {
private void connectToServer(String url) throws URISyntaxException { private void connectToServer(String url) throws URISyntaxException {
client = new FHIRToolingClient(url, "FHIR-Command-Line-App"); client = new FHIRToolingClient(url, "FHIR-Command-Line-App");
CapabilityStatement cs = client.getCapabilitiesStatementQuick(); CapabilityStatement cs = client.getCapabilitiesStatementQuick();
<<<<<<< HEAD
System.out.println("Connected to "+url+": "+cs.getSoftware().getName()+", version "+cs.getFhirVersion().toCode()); System.out.println("Connected to "+url+": "+cs.getSoftware().getName()+", version "+cs.getFhirVersion().toCode());
} }
@ -431,11 +383,6 @@ public class CmdLineApp {
System.out.println(" x - exit"); System.out.println(" x - exit");
} }
=======
System.out.println("Connected to "+url+": "+cs.getSoftware().getName()+".");
}
>>>>>>> master
private void genMenu() { private void genMenu() {
System.out.println("Simple Client. Commands you can run:"); System.out.println("Simple Client. Commands you can run:");
System.out.println(" c {url} - connect to a server"); System.out.println(" c {url} - connect to a server");