fix merge issues
This commit is contained in:
parent
c52d5a71b4
commit
0140fa1ad1
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@ -10,33 +10,24 @@ import org.hl7.fhir.exceptions.FHIRException;
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import org.hl7.fhir.r4.context.SimpleWorkerContext;
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import org.hl7.fhir.r4.context.SimpleWorkerContext;
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import org.hl7.fhir.r4.formats.IParser.OutputStyle;
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import org.hl7.fhir.r4.formats.IParser.OutputStyle;
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import org.hl7.fhir.r4.formats.JsonParser;
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import org.hl7.fhir.r4.formats.JsonParser;
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<<<<<<< HEAD
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import org.hl7.fhir.r4.formats.XmlParser;
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import org.hl7.fhir.r4.formats.XmlParser;
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=======
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>>>>>>> master
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import org.hl7.fhir.r4.model.Base;
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import org.hl7.fhir.r4.model.Base;
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import org.hl7.fhir.r4.model.BooleanType;
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import org.hl7.fhir.r4.model.BooleanType;
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import org.hl7.fhir.r4.model.Bundle;
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import org.hl7.fhir.r4.model.Bundle;
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import org.hl7.fhir.r4.model.Bundle.BundleEntryComponent;
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import org.hl7.fhir.r4.model.Bundle.BundleEntryComponent;
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import org.hl7.fhir.r4.model.CapabilityStatement;
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import org.hl7.fhir.r4.model.CapabilityStatement;
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<<<<<<< HEAD
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import org.hl7.fhir.r4.model.CodeSystem;
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import org.hl7.fhir.r4.model.CodeSystem;
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=======
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>>>>>>> master
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import org.hl7.fhir.r4.model.CodeType;
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import org.hl7.fhir.r4.model.CodeType;
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import org.hl7.fhir.r4.model.CodeableConcept;
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import org.hl7.fhir.r4.model.CodeableConcept;
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import org.hl7.fhir.r4.model.Coding;
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import org.hl7.fhir.r4.model.Coding;
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import org.hl7.fhir.r4.model.Condition;
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import org.hl7.fhir.r4.model.Condition;
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<<<<<<< HEAD
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import org.hl7.fhir.r4.model.DateType;
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import org.hl7.fhir.r4.model.DateType;
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import org.hl7.fhir.r4.model.HumanName;
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import org.hl7.fhir.r4.model.HumanName;
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import org.hl7.fhir.r4.model.Immunization;
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import org.hl7.fhir.r4.model.Immunization;
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import org.hl7.fhir.r4.model.Parameters;
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import org.hl7.fhir.r4.model.Parameters;
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import org.hl7.fhir.r4.model.Parameters.ParametersParameterComponent;
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import org.hl7.fhir.r4.model.Parameters.ParametersParameterComponent;
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=======
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import org.hl7.fhir.r4.model.HumanName;
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import org.hl7.fhir.r4.model.HumanName;
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import org.hl7.fhir.r4.model.Immunization;
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import org.hl7.fhir.r4.model.Immunization;
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>>>>>>> master
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import org.hl7.fhir.r4.model.Patient;
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import org.hl7.fhir.r4.model.Patient;
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import org.hl7.fhir.r4.model.Period;
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import org.hl7.fhir.r4.model.Period;
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import org.hl7.fhir.r4.model.Procedure;
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import org.hl7.fhir.r4.model.Procedure;
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@ -79,11 +70,8 @@ public class CmdLineApp {
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finished = true;
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finished = true;
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} else if (p.length == 1 && p[0].equals("?")) {
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} else if (p.length == 1 && p[0].equals("?")) {
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genMenu();
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genMenu();
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<<<<<<< HEAD
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} else if (p.length == 1 && p[0].equals("?tx")) {
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} else if (p.length == 1 && p[0].equals("?tx")) {
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genMenuTx();
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genMenuTx();
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=======
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>>>>>>> master
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} else if (p.length >= 1 && p[0].equals("c")) {
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} else if (p.length >= 1 && p[0].equals("c")) {
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if (p.length == 1) {
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if (p.length == 1) {
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connectToServer("http://hapi.fhir.org/baseR4");
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connectToServer("http://hapi.fhir.org/baseR4");
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@ -129,15 +117,10 @@ public class CmdLineApp {
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select("Patient", p[1]);
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select("Patient", p[1]);
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} else if (p.length == 3 && p[0].equals("e")) {
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} else if (p.length == 3 && p[0].equals("e")) {
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edit(p[1], p[2]);
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edit(p[1], p[2]);
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<<<<<<< HEAD
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} else if (p.length > 3 && p[0].equals("tx")) {
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} else if (p.length > 3 && p[0].equals("tx")) {
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tx(p);
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tx(p);
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} else {
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tx(p);
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=======
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} else {
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} else {
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System.out.println("Command unknown or not understood: "+cmd);
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System.out.println("Command unknown or not understood: "+cmd);
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>>>>>>> master
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}
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}
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} catch (Exception e) {
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} catch (Exception e) {
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System.out.println("Error executing command "+p[0]+": "+e.getMessage());
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System.out.println("Error executing command "+p[0]+": "+e.getMessage());
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@ -147,7 +130,6 @@ public class CmdLineApp {
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System.out.println("Finished!");
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System.out.println("Finished!");
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}
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}
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<<<<<<< HEAD
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private boolean tx(String[] p) throws IOException {
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private boolean tx(String[] p) throws IOException {
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if (p[1].equals("l")) {
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if (p[1].equals("l")) {
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if (p.length == 4) {
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if (p.length == 4) {
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@ -190,10 +172,6 @@ public class CmdLineApp {
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}
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}
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private void getImmunizations() throws IOException {
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private void getImmunizations() throws IOException {
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=======
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private void getImmunizations() {
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>>>>>>> master
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Bundle bnd = client.search("Immunization", "?patient="+currentId);
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Bundle bnd = client.search("Immunization", "?patient="+currentId);
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System.out.println(""+bnd.getTotal()+" Immunizations found. Printing "+bnd.getEntry().size());
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System.out.println(""+bnd.getTotal()+" Immunizations found. Printing "+bnd.getEntry().size());
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@ -203,11 +181,8 @@ public class CmdLineApp {
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}
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}
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}
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}
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<<<<<<< HEAD
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private void getProcedures() throws IOException {
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private void getProcedures() throws IOException {
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=======
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private void getProcedures() {
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>>>>>>> master
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Bundle bnd = client.search("Procedure", "?patient="+currentId);
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Bundle bnd = client.search("Procedure", "?patient="+currentId);
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System.out.println(""+bnd.getTotal()+" Procedures found. Printing "+bnd.getEntry().size());
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System.out.println(""+bnd.getTotal()+" Procedures found. Printing "+bnd.getEntry().size());
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@ -218,11 +193,8 @@ public class CmdLineApp {
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}
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}
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}
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}
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<<<<<<< HEAD
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private void getConditions() throws IOException {
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private void getConditions() throws IOException {
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=======
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private void getConditions() {
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>>>>>>> master
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Bundle bnd = client.search("Condition", "?patient="+currentId);
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Bundle bnd = client.search("Condition", "?patient="+currentId);
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System.out.println(""+bnd.getTotal()+" Conditions found. Printing "+bnd.getEntry().size());
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System.out.println(""+bnd.getTotal()+" Conditions found. Printing "+bnd.getEntry().size());
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@ -257,10 +229,7 @@ public class CmdLineApp {
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case "boolean" : return new BooleanType(value);
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case "boolean" : return new BooleanType(value);
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case "code" : return new CodeType(value);
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case "code" : return new CodeType(value);
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case "string" : return new StringType(value);
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case "string" : return new StringType(value);
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<<<<<<< HEAD
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case "date" : return new DateType(value);
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case "date" : return new DateType(value);
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=======
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>>>>>>> master
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}
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}
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throw new FHIRException("Unhandled type "+p.getTypeCode());
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throw new FHIRException("Unhandled type "+p.getTypeCode());
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}
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}
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@ -278,11 +247,7 @@ public class CmdLineApp {
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System.out.println(new JsonParser().setOutputStyle(OutputStyle.PRETTY).composeString(currentResource));
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System.out.println(new JsonParser().setOutputStyle(OutputStyle.PRETTY).composeString(currentResource));
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}
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}
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<<<<<<< HEAD
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private void select(String type, String id) throws IOException {
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private void select(String type, String id) throws IOException {
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=======
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private void select(String type, String id) {
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>>>>>>> master
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if (type.equals("Patient")) {
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if (type.equals("Patient")) {
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currentResource = client.fetchResource(Patient.class, id);
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currentResource = client.fetchResource(Patient.class, id);
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} else if (type.equals("Immunization")) {
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} else if (type.equals("Immunization")) {
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@ -298,12 +263,8 @@ public class CmdLineApp {
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System.out.println("Resource = "+currentId+" "+summary(currentResource));
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System.out.println("Resource = "+currentId+" "+summary(currentResource));
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}
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}
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<<<<<<< HEAD
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private String summary(Resource r) throws IOException {
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private String summary(Resource r) throws IOException {
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// return new XmlParser().composeString(r);
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// return new XmlParser().composeString(r);
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=======
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private String summary(Resource r) {
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>>>>>>> master
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if (r instanceof Patient) {
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if (r instanceof Patient) {
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Patient pat = (Patient) r;
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Patient pat = (Patient) r;
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return pat.getIdBase()+" "+pat.getGender()+" "+pat.getBirthDateElement().asStringValue()+" "+name(pat);
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return pat.getIdBase()+" "+pat.getGender()+" "+pat.getBirthDateElement().asStringValue()+" "+name(pat);
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@ -366,11 +327,7 @@ public class CmdLineApp {
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return "";
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return "";
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}
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}
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<<<<<<< HEAD
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private void search(String[] p) throws IOException {
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private void search(String[] p) throws IOException {
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=======
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private void search(String[] p) {
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>>>>>>> master
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if (client == null) {
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if (client == null) {
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throw new FHIRException("Not connected to to a server");
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throw new FHIRException("Not connected to to a server");
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}
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}
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@ -378,11 +335,7 @@ public class CmdLineApp {
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if (p.length > 2) {
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if (p.length > 2) {
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search = search +"&gender="+p[2];
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search = search +"&gender="+p[2];
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if (p.length > 3) {
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if (p.length > 3) {
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<<<<<<< HEAD
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search = search +"&birthdate="+p[3];
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search = search +"&birthdate="+p[3];
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=======
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search = search +"&dob="+p[3];
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>>>>>>> master
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}
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}
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}
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}
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Bundle bnd = client.search("Patient", search);
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Bundle bnd = client.search("Patient", search);
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@ -418,7 +371,6 @@ public class CmdLineApp {
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private void connectToServer(String url) throws URISyntaxException {
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private void connectToServer(String url) throws URISyntaxException {
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client = new FHIRToolingClient(url, "FHIR-Command-Line-App");
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client = new FHIRToolingClient(url, "FHIR-Command-Line-App");
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CapabilityStatement cs = client.getCapabilitiesStatementQuick();
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CapabilityStatement cs = client.getCapabilitiesStatementQuick();
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<<<<<<< HEAD
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System.out.println("Connected to "+url+": "+cs.getSoftware().getName()+", version "+cs.getFhirVersion().toCode());
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System.out.println("Connected to "+url+": "+cs.getSoftware().getName()+", version "+cs.getFhirVersion().toCode());
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}
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}
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@ -431,11 +383,6 @@ public class CmdLineApp {
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System.out.println(" x - exit");
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System.out.println(" x - exit");
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}
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}
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=======
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System.out.println("Connected to "+url+": "+cs.getSoftware().getName()+".");
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}
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>>>>>>> master
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private void genMenu() {
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private void genMenu() {
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System.out.println("Simple Client. Commands you can run:");
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System.out.println("Simple Client. Commands you can run:");
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System.out.println(" c {url} - connect to a server");
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System.out.println(" c {url} - connect to a server");
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