more package maintenance, and more work on mapping generator
This commit is contained in:
Grahame Grieve
parent
ee0a32b6ab
commit
0357e58203
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@ -0,0 +1,80 @@
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package org.hl7.fhir.convertors.misc;
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import java.io.File;
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import java.io.IOException;
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import java.util.ArrayList;
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import java.util.List;
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import org.hl7.fhir.utilities.TextFile;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.json.JsonTrackingParser;
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import com.google.gson.Gson;
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import com.google.gson.GsonBuilder;
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import com.google.gson.JsonObject;
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public class PackageMaintainer {
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private static final String PATH = "C:\\work\\org.hl7.fhir\\packages\\core";
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public static void main(String[] args) throws IOException {
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new PackageMaintainer().check("r4");
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new PackageMaintainer().check("r2");
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new PackageMaintainer().check("r3");
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new PackageMaintainer().check("r2b");
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}
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private void check(String ver) throws IOException {
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System.out.println("Check "+ver);
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List<String> allIds = listResources(Utilities.path(PATH, "hl7.fhir."+ver+".examples", "package"));
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List<String> coreIds = listResources(Utilities.path(PATH, "hl7.fhir."+ver+".core", "package"));
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for (String s : coreIds) {
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if (!allIds.contains(s)) {
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System.out.println("Core contains "+s+" but allIds doesn't");
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}
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}
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for (String s : allIds) {
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if (!coreIds.contains(s)) {
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String c = s.substring(0, s.indexOf("-"));
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if (Utilities.existsInList(c, "CodeSystem", "ValueSet", "ConceptMap", "StructureDefinition", "StructureMap", "NamingSystem", "SearchParameter", "OperationDefinition", "CapabilityStatement", "Conformance"))
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System.out.println("Examples contains "+s+" but core doesn't");
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}
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}
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strip(new File(Utilities.path(PATH, "hl7.fhir."+ver+".core", "package")));
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strip(new File(Utilities.path(PATH, "hl7.fhir."+ver+".expansions", "package")));
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if (!ver.equals("r2b"))
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strip(new File(Utilities.path(PATH, "hl7.fhir."+ver+".elements", "package")));
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}
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private List<String> listResources(String dir) {
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File folder = new File(dir);
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List<String> res = new ArrayList<>();
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for (String fn : folder.list()) {
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if (fn.endsWith(".json") && fn.contains("-")) {
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String s = fn;
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s = s.substring(0, s.indexOf("."));
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res.add(s);
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}
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}
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return res;
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}
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private void strip(File folder) throws IOException {
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for (File f : folder.listFiles()) {
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if (f.isDirectory())
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strip(f);
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else if (f.getName().endsWith(".json")) {
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JsonObject json = JsonTrackingParser.parseJson(f);
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if (json.has("resourceType") && json.has("text")) {
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json.remove("text");
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Gson gson = new GsonBuilder().create();
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String src = gson.toJson(json);
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TextFile.stringToFile(src, f.getAbsolutePath());
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}
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}
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}
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}
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}
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@ -0,0 +1,45 @@
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package org.hl7.fhir.dstu2.utils;
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import java.io.FileInputStream;
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import java.io.FileNotFoundException;
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import java.io.FileOutputStream;
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import java.io.IOException;
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import org.hl7.fhir.exceptions.FHIRFormatError;
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import org.apache.commons.lang3.StringUtils;
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import org.hl7.fhir.dstu2.formats.JsonParser;
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import org.hl7.fhir.dstu2.model.Bundle;
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import org.hl7.fhir.dstu2.model.Bundle.BundleEntryComponent;
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import org.hl7.fhir.dstu2.model.Resource;
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import org.hl7.fhir.dstu2.model.ValueSet;
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import org.hl7.fhir.utilities.Utilities;
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public class Unbundler {
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public static void main(String[] args) throws Exception {
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unbundle(args[0]);
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}
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private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
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String folder = Utilities.getDirectoryForFile(src);
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Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
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for (BundleEntryComponent be : bnd.getEntry()) {
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Resource r = be.getResource();
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if (r != null) {
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if (StringUtils.isBlank(r.getId())) {
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if (r instanceof ValueSet)
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r.setId(tail((ValueSet) r));
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}
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if (!StringUtils.isBlank(r.getId())) {
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String tgt = Utilities.path(folder, r.fhirType()+"-"+r.getId()+".json");
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new JsonParser().compose(new FileOutputStream(tgt), r);
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}
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}
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}
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}
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private static String tail(ValueSet r) {
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return r.getUrl().contains("/") ? r.getUrl().substring(r.getUrl().lastIndexOf("/")+1) : null;
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}
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}
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@ -0,0 +1,45 @@
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package org.hl7.fhir.dstu2016may.utils;
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import java.io.FileInputStream;
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import java.io.FileNotFoundException;
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import java.io.FileOutputStream;
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import java.io.IOException;
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import org.hl7.fhir.exceptions.FHIRFormatError;
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import org.apache.commons.lang3.StringUtils;
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import org.hl7.fhir.dstu2016may.model.ValueSet;
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import org.hl7.fhir.dstu2016may.formats.JsonParser;
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import org.hl7.fhir.dstu2016may.model.Bundle;
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import org.hl7.fhir.dstu2016may.model.Bundle.BundleEntryComponent;
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import org.hl7.fhir.dstu2016may.model.Resource;
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import org.hl7.fhir.utilities.Utilities;
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public class Unbundler {
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public static void main(String[] args) throws Exception {
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unbundle(args[0]);
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}
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private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
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String folder = Utilities.getDirectoryForFile(src);
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Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
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for (BundleEntryComponent be : bnd.getEntry()) {
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Resource r = be.getResource();
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if (r != null) {
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if (StringUtils.isBlank(r.getId())) {
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if (r instanceof ValueSet)
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r.setId(tail((ValueSet) r));
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}
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if (!StringUtils.isBlank(r.getId())) {
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String tgt = Utilities.path(folder, r.fhirType()+"-"+r.getId()+".json");
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new JsonParser().compose(new FileOutputStream(tgt), r);
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}
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}
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}
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}
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private static String tail(ValueSet r) {
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return r.getUrl().contains("/") ? r.getUrl().substring(r.getUrl().lastIndexOf("/")+1) : null;
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}
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}
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package org.hl7.fhir.dstu3.utils;
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import java.io.FileInputStream;
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import java.io.FileNotFoundException;
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import java.io.FileOutputStream;
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import java.io.IOException;
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import org.hl7.fhir.exceptions.FHIRFormatError;
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import org.hl7.fhir.dstu3.formats.JsonParser;
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import org.hl7.fhir.dstu3.model.Bundle;
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import org.hl7.fhir.dstu3.model.Bundle.BundleEntryComponent;
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import org.hl7.fhir.dstu3.model.Resource;
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import org.hl7.fhir.utilities.Utilities;
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public class Unbundler {
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public static void main(String[] args) throws Exception {
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unbundle(args[0]);
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}
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private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
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String folder = Utilities.getDirectoryForFile(src);
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Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
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for (BundleEntryComponent be : bnd.getEntry()) {
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Resource r = be.getResource();
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if (r != null) {
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String tgt = Utilities.path(folder, r.fhirType()+"-"+r.getId()+".json");
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new JsonParser().compose(new FileOutputStream(tgt), r);
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}
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}
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}
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}
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package org.hl7.fhir.r4.utils;
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import java.io.File;
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import java.io.FileInputStream;
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import java.io.FileNotFoundException;
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import java.io.FileOutputStream;
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import java.io.IOException;
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import org.apache.commons.lang3.StringUtils;
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import org.hl7.fhir.r4.model.ValueSet;
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import org.hl7.fhir.exceptions.FHIRFormatError;
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import org.hl7.fhir.r4.formats.JsonParser;
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import org.hl7.fhir.r4.model.Bundle;
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import org.hl7.fhir.r4.model.Bundle.BundleEntryComponent;
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import org.hl7.fhir.r4.model.MetadataResource;
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import org.hl7.fhir.r4.model.Resource;
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import org.hl7.fhir.utilities.Utilities;
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public class Unbundler {
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public static void main(String[] args) throws Exception {
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unbundle(args[0]);
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}
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private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
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String folder = Utilities.getDirectoryForFile(src);
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Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
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for (BundleEntryComponent be : bnd.getEntry()) {
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Resource r = be.getResource();
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if (r != null) {
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if (StringUtils.isBlank(r.getId())) {
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if (r instanceof MetadataResource)
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r.setId(tail((MetadataResource) r));
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}
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if (!StringUtils.isBlank(r.getId())) {
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String tgt = Utilities.path(folder, r.fhirType()+"-"+r.getId()+".json");
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if (!new File(tgt).exists())
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new JsonParser().compose(new FileOutputStream(tgt), r);
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}
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}
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}
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}
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private static String tail(MetadataResource r) {
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return r.getUrl().contains("/") ? r.getUrl().substring(r.getUrl().lastIndexOf("/")+1) : null;
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}
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}
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package org.hl7.fhir.r5.patterns;
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/*
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Copyright (c) 2011+, HL7, Inc.
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All rights reserved.
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Redistribution and use in source and binary forms, with or without modification,
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are permitted provided that the following conditions are met:
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* Redistributions of source code must retain the above copyright notice, this
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list of conditions and the following disclaimer.
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* Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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* Neither the name of HL7 nor the names of its contributors may be used to
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endorse or promote products derived from this software without specific
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prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
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ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
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WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
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IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
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INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
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NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
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PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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POSSIBILITY OF SUCH DAMAGE.
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*/
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// Generated on Wed, May 8, 2019 10:40+1000 for FHIR v4.1.0
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import java.util.*;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.r5.model.Enumerations.*;
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import org.hl7.fhir.r5.model.*;
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import org.hl7.fhir.r5.model.Enumeration;
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import org.hl7.fhir.exceptions.FHIRException;
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public class ActivityDefinitionDefinitionImpl extends PatternBaseImpl implements Definition {
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private ActivityDefinition wrapped;
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public ActivityDefinitionDefinitionImpl(ActivityDefinition wrapped) {
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super(wrapped);
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this.wrapped = wrapped;
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}
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public int getUrlMin() {
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return 0;
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}
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public int getUrlMax() {
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return 1;
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}
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public UriType getUrlElement() throws FHIRException {
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return wrapped.getUrlElement();
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}
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public boolean hasUrlElement() {
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return wrapped.hasUrlElement();
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}
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public boolean hasUrl() {
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return wrapped.hasUrl();
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}
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public Definition setUrlElement(UriType value) throws FHIRException {
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wrapped.setUrlElement(value);
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return this;
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}
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public String getUrl() throws FHIRException {
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return wrapped.getUrl();
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}
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public Definition setUrl(String value) throws FHIRException {
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wrapped.setUrl(value);
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return this;
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}
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public int getIdentifierMin() {
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return 0;
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}
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public int getIdentifierMax() {
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return 2147483647;
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}
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public Identifier getIdentifier() throws FHIRException {
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return wrapped.getIdentifierFirstRep();
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}
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public boolean hasIdentifier() {
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return wrapped.hasIdentifier();
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}
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public Definition setIdentifier(Identifier value) throws FHIRException {
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wrapped.getIdentifier().clear();
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if (value != null)
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wrapped.getIdentifier().add(value);
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return this;
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}
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public int getVersionMin() {
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return 0;
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}
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public int getVersionMax() {
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return 1;
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}
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public StringType getVersionElement() throws FHIRException {
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return wrapped.getVersionElement();
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}
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public boolean hasVersionElement() {
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return wrapped.hasVersionElement();
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}
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public boolean hasVersion() {
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return wrapped.hasVersion();
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}
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public Definition setVersionElement(StringType value) throws FHIRException {
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wrapped.setVersionElement(value);
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return this;
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}
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public String getVersion() throws FHIRException {
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return wrapped.getVersion();
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}
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public Definition setVersion(String value) throws FHIRException {
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wrapped.setVersion(value);
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return this;
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}
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public int getTitleMin() {
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return 0;
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}
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public int getTitleMax() {
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return 1;
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}
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public StringType getTitleElement() throws FHIRException {
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return wrapped.getTitleElement();
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}
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public boolean hasTitleElement() {
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return wrapped.hasTitleElement();
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}
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public boolean hasTitle() {
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return wrapped.hasTitle();
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}
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public Definition setTitleElement(StringType value) throws FHIRException {
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wrapped.setTitleElement(value);
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return this;
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}
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public String getTitle() throws FHIRException {
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return wrapped.getTitle();
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}
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public Definition setTitle(String value) throws FHIRException {
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wrapped.setTitle(value);
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return this;
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}
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public int getDerivedFromCanonicalMin() {
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return 0;
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}
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public int getDerivedFromCanonicalMax() {
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return 0;
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}
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public List<CanonicalType> getDerivedFromCanonical() throws FHIRException {
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throw new FHIRException("The pattern property 'derivedFromCanonical' is not supported in 'ActivityDefinition'");
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}
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public Definition setDerivedFromCanonical(List<CanonicalType> theDerivedFromCanonical) throws FHIRException {
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throw new FHIRException("The pattern property 'derivedFromCanonical' is not supported in 'ActivityDefinition'");
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}
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public boolean hasDerivedFromCanonical() {
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return false;
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}
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public CanonicalType addDerivedFromCanonicalElement() throws FHIRException {
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throw new FHIRException("The pattern property 'derivedFromCanonical' is not supported in 'ActivityDefinition'");
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}
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public Definition addDerivedFromCanonical(String value) throws FHIRException {
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throw new FHIRException("The pattern property 'derivedFromCanonical' is not supported in 'ActivityDefinition'");
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}
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public boolean hasDerivedFromCanonical(String value) {
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return false;
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}
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|
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public int getDerivedFromUriMin() {
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return 0;
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}
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public int getDerivedFromUriMax() {
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return 0;
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}
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public List<UriType> getDerivedFromUri() throws FHIRException {
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throw new FHIRException("The pattern property 'derivedFromUri' is not supported in 'ActivityDefinition'");
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}
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public Definition setDerivedFromUri(List<UriType> theDerivedFromUri) throws FHIRException {
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throw new FHIRException("The pattern property 'derivedFromUri' is not supported in 'ActivityDefinition'");
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}
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|
||||
public boolean hasDerivedFromUri() {
|
||||
return false;
|
||||
}
|
||||
|
||||
|
||||
public UriType addDerivedFromUriElement() throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'derivedFromUri' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
|
||||
public Definition addDerivedFromUri(String value) throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'derivedFromUri' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
|
||||
public boolean hasDerivedFromUri(String value) {
|
||||
return false;
|
||||
}
|
||||
|
||||
|
||||
public int getPartOfMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getPartOfMax() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public List<CanonicalType> getPartOf() throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'partOf' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
public Definition setPartOf(List<CanonicalType> thePartOf) throws FHIRException {
|
||||
|
||||
throw new FHIRException("The pattern property 'partOf' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
public boolean hasPartOf() {
|
||||
return false;
|
||||
}
|
||||
|
||||
|
||||
public CanonicalType addPartOfElement() throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'partOf' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
|
||||
public Definition addPartOf(String value) throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'partOf' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
|
||||
public boolean hasPartOf(String value) {
|
||||
return false;
|
||||
}
|
||||
|
||||
|
||||
public int getReplacesMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getReplacesMax() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public List<CanonicalType> getReplaces() throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'replaces' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
public Definition setReplaces(List<CanonicalType> theReplaces) throws FHIRException {
|
||||
|
||||
throw new FHIRException("The pattern property 'replaces' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
public boolean hasReplaces() {
|
||||
return false;
|
||||
}
|
||||
|
||||
|
||||
public CanonicalType addReplacesElement() throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'replaces' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
|
||||
public Definition addReplaces(String value) throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'replaces' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
|
||||
public boolean hasReplaces(String value) {
|
||||
return false;
|
||||
}
|
||||
|
||||
|
||||
public int getStatusMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getStatusMax() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public Enumeration<PublicationStatus> getStatusElement() throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'status' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
|
||||
public boolean hasStatusElement() {
|
||||
return false;
|
||||
}
|
||||
|
||||
|
||||
public boolean hasStatus() {
|
||||
return false;
|
||||
}
|
||||
|
||||
|
||||
public Definition setStatusElement(Enumeration<PublicationStatus> value) throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'status' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
|
||||
public PublicationStatus getStatus() throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'status' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
public Definition setStatus(PublicationStatus value) throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'status' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
public int getExperimentalMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getExperimentalMax() {
|
||||
return 1;
|
||||
}
|
||||
|
||||
public BooleanType getExperimentalElement() throws FHIRException {
|
||||
return wrapped.getExperimentalElement();
|
||||
}
|
||||
|
||||
|
||||
public boolean hasExperimentalElement() {
|
||||
return wrapped.hasExperimentalElement();
|
||||
}
|
||||
|
||||
|
||||
public boolean hasExperimental() {
|
||||
return wrapped.hasExperimental();
|
||||
}
|
||||
|
||||
|
||||
public Definition setExperimentalElement(BooleanType value) throws FHIRException {
|
||||
wrapped.setExperimentalElement(value);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
|
||||
public boolean getExperimental() throws FHIRException {
|
||||
return wrapped.getExperimental();
|
||||
}
|
||||
|
||||
public Definition setExperimental(boolean value) throws FHIRException {
|
||||
wrapped.setExperimental(value);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
public int getSubjectMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getSubjectMax() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public Type getSubject() throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'subject[x]' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
public CodeableConcept getSubjectCodeableConcept() throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'subject[x]' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
public boolean hasSubjectCodeableConcept() {
|
||||
return false;
|
||||
}
|
||||
|
||||
public Reference getSubjectReference() throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'subject[x]' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
public boolean hasSubjectReference() {
|
||||
return false;
|
||||
}
|
||||
|
||||
public boolean hasSubject() {
|
||||
return false;
|
||||
}
|
||||
|
||||
public Definition setSubject(Type value) throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'subject[x]' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
public int getDateMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getDateMax() {
|
||||
return 1;
|
||||
}
|
||||
|
||||
public DateTimeType getDateElement() throws FHIRException {
|
||||
return wrapped.getDateElement();
|
||||
}
|
||||
|
||||
|
||||
public boolean hasDateElement() {
|
||||
return wrapped.hasDateElement();
|
||||
}
|
||||
|
||||
|
||||
public boolean hasDate() {
|
||||
return wrapped.hasDate();
|
||||
}
|
||||
|
||||
|
||||
public Definition setDateElement(DateTimeType value) throws FHIRException {
|
||||
wrapped.setDateElement(value);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
|
||||
public Date getDate() throws FHIRException {
|
||||
return wrapped.getDate();
|
||||
}
|
||||
|
||||
public Definition setDate(Date value) throws FHIRException {
|
||||
wrapped.setDate(value);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
public int getPublisherMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getPublisherMax() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public Reference getPublisher() throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'publisher' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
public boolean hasPublisher() {
|
||||
return false;
|
||||
}
|
||||
|
||||
public Definition setPublisher(Reference value) throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'publisher' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
public int getContactMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getContactMax() {
|
||||
return 2147483647;
|
||||
}
|
||||
|
||||
public List<ContactDetail> getContact() throws FHIRException {
|
||||
return wrapped.getContact();
|
||||
}
|
||||
|
||||
public Definition setContact(List<ContactDetail> theContact) throws FHIRException {
|
||||
|
||||
wrapped.setContact(theContact);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
public boolean hasContact() {
|
||||
return wrapped.hasContact();
|
||||
}
|
||||
|
||||
|
||||
public ContactDetail addContact() throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'contact' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
|
||||
public Definition addContact(ContactDetail t) throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'contact' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
|
||||
public ContactDetail getContactFirstRep() throws FHIRException {
|
||||
|
||||
return wrapped.getContactFirstRep();
|
||||
}
|
||||
|
||||
public int getDescriptionMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getDescriptionMax() {
|
||||
return 1;
|
||||
}
|
||||
|
||||
public MarkdownType getDescriptionElement() throws FHIRException {
|
||||
return wrapped.getDescriptionElement();
|
||||
}
|
||||
|
||||
|
||||
public boolean hasDescriptionElement() {
|
||||
return wrapped.hasDescriptionElement();
|
||||
}
|
||||
|
||||
|
||||
public boolean hasDescription() {
|
||||
return wrapped.hasDescription();
|
||||
}
|
||||
|
||||
|
||||
public Definition setDescriptionElement(MarkdownType value) throws FHIRException {
|
||||
wrapped.setDescriptionElement(value);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
|
||||
public String getDescription() throws FHIRException {
|
||||
return wrapped.getDescription();
|
||||
}
|
||||
|
||||
public Definition setDescription(String value) throws FHIRException {
|
||||
wrapped.setDescription(value);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
public int getUseContextMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getUseContextMax() {
|
||||
return 2147483647;
|
||||
}
|
||||
|
||||
public List<UsageContext> getUseContext() throws FHIRException {
|
||||
return wrapped.getUseContext();
|
||||
}
|
||||
|
||||
public Definition setUseContext(List<UsageContext> theUseContext) throws FHIRException {
|
||||
|
||||
wrapped.setUseContext(theUseContext);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
public boolean hasUseContext() {
|
||||
return wrapped.hasUseContext();
|
||||
}
|
||||
|
||||
|
||||
public UsageContext addUseContext() throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'useContext' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
|
||||
public Definition addUseContext(UsageContext t) throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'useContext' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
|
||||
public UsageContext getUseContextFirstRep() throws FHIRException {
|
||||
|
||||
return wrapped.getUseContextFirstRep();
|
||||
}
|
||||
|
||||
public int getJurisdictionMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getJurisdictionMax() {
|
||||
return 2147483647;
|
||||
}
|
||||
|
||||
public List<CodeableConcept> getJurisdiction() throws FHIRException {
|
||||
return wrapped.getJurisdiction();
|
||||
}
|
||||
|
||||
public Definition setJurisdiction(List<CodeableConcept> theJurisdiction) throws FHIRException {
|
||||
|
||||
wrapped.setJurisdiction(theJurisdiction);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
public boolean hasJurisdiction() {
|
||||
return wrapped.hasJurisdiction();
|
||||
}
|
||||
|
||||
|
||||
public CodeableConcept addJurisdiction() throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'jurisdiction' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
|
||||
public Definition addJurisdiction(CodeableConcept t) throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'jurisdiction' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
|
||||
public CodeableConcept getJurisdictionFirstRep() throws FHIRException {
|
||||
|
||||
return wrapped.getJurisdictionFirstRep();
|
||||
}
|
||||
|
||||
public int getPurposeMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getPurposeMax() {
|
||||
return 1;
|
||||
}
|
||||
|
||||
public MarkdownType getPurposeElement() throws FHIRException {
|
||||
return wrapped.getPurposeElement();
|
||||
}
|
||||
|
||||
|
||||
public boolean hasPurposeElement() {
|
||||
return wrapped.hasPurposeElement();
|
||||
}
|
||||
|
||||
|
||||
public boolean hasPurpose() {
|
||||
return wrapped.hasPurpose();
|
||||
}
|
||||
|
||||
|
||||
public Definition setPurposeElement(MarkdownType value) throws FHIRException {
|
||||
wrapped.setPurposeElement(value);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
|
||||
public String getPurpose() throws FHIRException {
|
||||
return wrapped.getPurpose();
|
||||
}
|
||||
|
||||
public Definition setPurpose(String value) throws FHIRException {
|
||||
wrapped.setPurpose(value);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
public int getCopyrightMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getCopyrightMax() {
|
||||
return 1;
|
||||
}
|
||||
|
||||
public MarkdownType getCopyrightElement() throws FHIRException {
|
||||
return wrapped.getCopyrightElement();
|
||||
}
|
||||
|
||||
|
||||
public boolean hasCopyrightElement() {
|
||||
return wrapped.hasCopyrightElement();
|
||||
}
|
||||
|
||||
|
||||
public boolean hasCopyright() {
|
||||
return wrapped.hasCopyright();
|
||||
}
|
||||
|
||||
|
||||
public Definition setCopyrightElement(MarkdownType value) throws FHIRException {
|
||||
wrapped.setCopyrightElement(value);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
|
||||
public String getCopyright() throws FHIRException {
|
||||
return wrapped.getCopyright();
|
||||
}
|
||||
|
||||
public Definition setCopyright(String value) throws FHIRException {
|
||||
wrapped.setCopyright(value);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
public int getApprovalDateMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getApprovalDateMax() {
|
||||
return 1;
|
||||
}
|
||||
|
||||
public DateType getApprovalDateElement() throws FHIRException {
|
||||
return wrapped.getApprovalDateElement();
|
||||
}
|
||||
|
||||
|
||||
public boolean hasApprovalDateElement() {
|
||||
return wrapped.hasApprovalDateElement();
|
||||
}
|
||||
|
||||
|
||||
public boolean hasApprovalDate() {
|
||||
return wrapped.hasApprovalDate();
|
||||
}
|
||||
|
||||
|
||||
public Definition setApprovalDateElement(DateType value) throws FHIRException {
|
||||
wrapped.setApprovalDateElement(value);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
|
||||
public Date getApprovalDate() throws FHIRException {
|
||||
return wrapped.getApprovalDate();
|
||||
}
|
||||
|
||||
public Definition setApprovalDate(Date value) throws FHIRException {
|
||||
wrapped.setApprovalDate(value);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
public int getLastReviewDateMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getLastReviewDateMax() {
|
||||
return 1;
|
||||
}
|
||||
|
||||
public DateType getLastReviewDateElement() throws FHIRException {
|
||||
return wrapped.getLastReviewDateElement();
|
||||
}
|
||||
|
||||
|
||||
public boolean hasLastReviewDateElement() {
|
||||
return wrapped.hasLastReviewDateElement();
|
||||
}
|
||||
|
||||
|
||||
public boolean hasLastReviewDate() {
|
||||
return wrapped.hasLastReviewDate();
|
||||
}
|
||||
|
||||
|
||||
public Definition setLastReviewDateElement(DateType value) throws FHIRException {
|
||||
wrapped.setLastReviewDateElement(value);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
|
||||
public Date getLastReviewDate() throws FHIRException {
|
||||
return wrapped.getLastReviewDate();
|
||||
}
|
||||
|
||||
public Definition setLastReviewDate(Date value) throws FHIRException {
|
||||
wrapped.setLastReviewDate(value);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
public int getEffectivePeriodMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getEffectivePeriodMax() {
|
||||
return 1;
|
||||
}
|
||||
|
||||
public Period getEffectivePeriod() throws FHIRException {
|
||||
return wrapped.getEffectivePeriod();
|
||||
}
|
||||
|
||||
public boolean hasEffectivePeriod() {
|
||||
return wrapped.hasEffectivePeriod();
|
||||
}
|
||||
|
||||
public Definition setEffectivePeriod(Period value) throws FHIRException {
|
||||
wrapped.setEffectivePeriod(value);
|
||||
return this;
|
||||
|
||||
}
|
||||
|
||||
public int getPerformerTypeMin() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public int getPerformerTypeMax() {
|
||||
return 0;
|
||||
}
|
||||
|
||||
public CodeableConcept getPerformerType() throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'performerType' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
public boolean hasPerformerType() {
|
||||
return false;
|
||||
}
|
||||
|
||||
public Definition setPerformerType(CodeableConcept value) throws FHIRException {
|
||||
throw new FHIRException("The pattern property 'performerType' is not supported in 'ActivityDefinition'");
|
||||
}
|
||||
|
||||
public String fhirType() {
|
||||
return "ActivityDefinition";
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
|
@ -27,8 +27,10 @@ public class IGHelper {
|
|||
|
||||
|
||||
public static final String EXT_SPREADSHEET = ToolingExtensions.EXT_IGP_SPREADSHEET;
|
||||
public static final String EXT_MAPPING_CSV = ToolingExtensions.EXT_IGP_MAPPING_CSV;
|
||||
public static final String EXT_BUNDLE = ToolingExtensions.EXT_IGP_BUNDLE;
|
||||
public static final String EXT_RESOURCE_INFO = ToolingExtensions.EXT_IGP_RESOURCE_INFO;
|
||||
public static final String EXT_PRIVATE_BASE = ToolingExtensions.EXT_PRIVATE_BASE;
|
||||
|
||||
public static String readStringParameter(ImplementationGuideDefinitionComponent ig, String name) {
|
||||
for (ImplementationGuideDefinitionParameterComponent p : ig.getParameter()) {
|
||||
|
|
|
|||
|
|
@ -3,6 +3,7 @@ package org.hl7.fhir.r5.utils;
|
|||
import java.io.File;
|
||||
import java.io.FileInputStream;
|
||||
import java.io.FileNotFoundException;
|
||||
import java.io.FileOutputStream;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.util.ArrayList;
|
||||
|
|
@ -10,15 +11,33 @@ import java.util.HashMap;
|
|||
import java.util.List;
|
||||
import java.util.Map;
|
||||
|
||||
import org.fhir.ucum.Utilities;
|
||||
import org.hl7.fhir.exceptions.FHIRException;
|
||||
import org.hl7.fhir.r5.formats.IParser.OutputStyle;
|
||||
import org.hl7.fhir.r5.formats.JsonParser;
|
||||
import org.hl7.fhir.r5.model.ConceptMap;
|
||||
import org.hl7.fhir.r5.model.ConceptMap.ConceptMapGroupComponent;
|
||||
import org.hl7.fhir.r5.model.ConceptMap.OtherElementComponent;
|
||||
import org.hl7.fhir.r5.model.ConceptMap.SourceElementComponent;
|
||||
import org.hl7.fhir.r5.model.ConceptMap.TargetElementComponent;
|
||||
import org.hl7.fhir.r5.model.DateTimeType;
|
||||
import org.hl7.fhir.r5.model.Enumerations.ConceptMapEquivalence;
|
||||
import org.hl7.fhir.r5.model.Enumerations.PublicationStatus;
|
||||
import org.hl7.fhir.r5.model.IdType;
|
||||
import org.hl7.fhir.r5.model.MetadataResource;
|
||||
import org.hl7.fhir.r5.model.StringType;
|
||||
import org.hl7.fhir.r5.model.StructureMap;
|
||||
import org.hl7.fhir.r5.model.StructureMap.StructureMapContextType;
|
||||
import org.hl7.fhir.r5.model.StructureMap.StructureMapGroupComponent;
|
||||
import org.hl7.fhir.r5.model.StructureMap.StructureMapGroupRuleComponent;
|
||||
import org.hl7.fhir.r5.model.StructureMap.StructureMapGroupRuleDependentComponent;
|
||||
import org.hl7.fhir.r5.model.StructureMap.StructureMapGroupRuleSourceComponent;
|
||||
import org.hl7.fhir.r5.model.StructureMap.StructureMapGroupRuleTargetComponent;
|
||||
import org.hl7.fhir.r5.model.StructureMap.StructureMapGroupTypeMode;
|
||||
import org.hl7.fhir.r5.model.StructureMap.StructureMapTransform;
|
||||
import org.hl7.fhir.r5.model.UrlType;
|
||||
import org.hl7.fhir.utilities.CSVReader;
|
||||
import org.hl7.fhir.utilities.TextFile;
|
||||
import org.hl7.fhir.utilities.Utilities;
|
||||
|
||||
public class MappingSheetParser {
|
||||
|
||||
|
|
@ -52,6 +71,12 @@ public class MappingSheetParser {
|
|||
public String getCardinality() {
|
||||
return cardinality;
|
||||
}
|
||||
public int getCardinalityMin() {
|
||||
return Integer.parseInt(cardinality.split("\\.")[0]);
|
||||
}
|
||||
public String getCardinalityMax() {
|
||||
return cardinality.split("\\.")[2];
|
||||
}
|
||||
public String getCondition() {
|
||||
return condition;
|
||||
}
|
||||
|
|
@ -82,21 +107,24 @@ public class MappingSheetParser {
|
|||
|
||||
}
|
||||
|
||||
private CSVReader csv;
|
||||
|
||||
private List<MappingRow> rows = new ArrayList<>();
|
||||
private Map<String, String> metadata = new HashMap<>();
|
||||
|
||||
public MappingSheetParser(InputStream stream, String name) throws FHIRException, IOException {
|
||||
super();
|
||||
this.csv = new CSVReader(stream);
|
||||
checkHeaders1(name);
|
||||
checkHeaders2(name);
|
||||
public MappingSheetParser() {
|
||||
super();
|
||||
}
|
||||
|
||||
public void parse(InputStream stream, String name) throws FHIRException, IOException {
|
||||
CSVReader csv = new CSVReader(stream);
|
||||
checkHeaders1(csv, name);
|
||||
checkHeaders2(csv, name);
|
||||
while (csv.line()) {
|
||||
processRow();
|
||||
processRow(csv);
|
||||
}
|
||||
}
|
||||
|
||||
private void checkHeaders1(String name) throws FHIRException, IOException {
|
||||
private void checkHeaders1(CSVReader csv, String name) throws FHIRException, IOException {
|
||||
csv.readHeaders();
|
||||
csv.checkColumn(1, "HL7 v2", "Mapping Sheet "+name);
|
||||
csv.checkColumn(6, "Condition (IF True)", "Mapping Sheet "+name);
|
||||
|
|
@ -106,7 +134,7 @@ public class MappingSheetParser {
|
|||
csv.checkColumn(17, "Value", "Mapping Sheet "+name);
|
||||
}
|
||||
|
||||
private void checkHeaders2(String name) throws FHIRException, IOException {
|
||||
private void checkHeaders2(CSVReader csv, String name) throws FHIRException, IOException {
|
||||
csv.readHeaders();
|
||||
csv.checkColumn(1, "Display Sequence", "Mapping Sheet "+name);
|
||||
csv.checkColumn(2, "Identifier", "Mapping Sheet "+name);
|
||||
|
|
@ -121,7 +149,7 @@ public class MappingSheetParser {
|
|||
csv.checkColumn(12, "Derived Mapping", "Mapping Sheet "+name);
|
||||
}
|
||||
|
||||
private void processRow() {
|
||||
private void processRow(CSVReader csv) {
|
||||
MappingRow mr = new MappingRow();
|
||||
mr.sequence = csv.value(1);
|
||||
mr.identifier = csv.value(2);
|
||||
|
|
@ -160,28 +188,38 @@ public class MappingSheetParser {
|
|||
element.setCode(row.getIdentifier());
|
||||
element.setId(row.getSequence());
|
||||
element.setDisplay(row.getName()+" : "+row.getDataType()+" ["+row.getCardinality()+"]");
|
||||
if (row.getCondition() != null)
|
||||
element.getTargetFirstRep().addDependsOn().setProperty("http://hl7.org/fhirpath").setValue(processCondition(row.getCondition()));
|
||||
element.getTargetFirstRep().setCode(row.getAttribute());
|
||||
element.getTargetFirstRep().setDisplay(row.getType()+" : ["+row.getMinMax()+"]");
|
||||
if (row.getDerived() != null)
|
||||
element.getTargetFirstRep().getProductFirstRep().setProperty(row.getDerived()).setValue(row.getDerivedMapping());
|
||||
if (row.getComments() != null)
|
||||
element.getTargetFirstRep().setComment(row.getComments());
|
||||
if (row.getDtMapping() != null)
|
||||
element.getTargetFirstRep().addExtension("htp://hl7.org/fhir/StructureDefinition/ConceptMap-type-mapping", new UrlType("todo#"+row.getDtMapping()));
|
||||
if (row.getVocabMapping() != null)
|
||||
element.getTargetFirstRep().addExtension("htp://hl7.org/fhir/StructureDefinition/ConceptMap-vocab-mapping", new UrlType("todo#"+row.getVocabMapping()));
|
||||
element.addExtension(ToolingExtensions.EXT_MAPPING_NAME, new StringType(row.getName()));
|
||||
element.addExtension(ToolingExtensions.EXT_MAPPING_TYPE, new StringType(row.getDataType()));
|
||||
element.addExtension(ToolingExtensions.EXT_MAPPING_CARD, new StringType(row.getCardinality()));
|
||||
if ("N/A".equals(row.getAttribute()))
|
||||
element.getTargetFirstRep().setEquivalence(ConceptMapEquivalence.UNMATCHED);
|
||||
else {
|
||||
element.getTargetFirstRep().setEquivalence(ConceptMapEquivalence.RELATEDTO);
|
||||
if (row.getCondition() != null)
|
||||
element.getTargetFirstRep().addDependsOn().setProperty("http://hl7.org/fhirpath").setValue(processCondition(row.getCondition()));
|
||||
element.getTargetFirstRep().setCode(row.getAttribute());
|
||||
element.getTargetFirstRep().setDisplay(row.getType()+" : ["+row.getMinMax()+"]");
|
||||
element.getTargetFirstRep().addExtension(ToolingExtensions.EXT_MAPPING_TGTTYPE, new StringType(row.getType()));
|
||||
element.getTargetFirstRep().addExtension(ToolingExtensions.EXT_MAPPING_TGTCARD, new StringType(row.getMinMax()));
|
||||
if (row.getDerived() != null)
|
||||
element.getTargetFirstRep().getProductFirstRep().setProperty(row.getDerived()).setValue(row.getDerivedMapping());
|
||||
if (row.getComments() != null)
|
||||
element.getTargetFirstRep().setComment(row.getComments());
|
||||
if (row.getDtMapping() != null)
|
||||
element.getTargetFirstRep().addExtension("http://hl7.org/fhir/StructureDefinition/ConceptMap-type-mapping", new UrlType("todo#"+row.getDtMapping()));
|
||||
if (row.getVocabMapping() != null)
|
||||
element.getTargetFirstRep().addExtension("http://hl7.org/fhir/StructureDefinition/ConceptMap-vocab-mapping", new UrlType("todo#"+row.getVocabMapping()));
|
||||
}
|
||||
}
|
||||
return map;
|
||||
}
|
||||
|
||||
private String processCondition(String condition) {
|
||||
if (condition.startsWith("IF ") && condition.endsWith(" IS VALUED"))
|
||||
return "`"+condition.substring(4, condition.length()-10)+".exists()";
|
||||
return "`"+condition.substring(4, condition.length()-10)+"`.exists()";
|
||||
if (condition.startsWith("IF ") && condition.endsWith(" DOES NOT EXIST"))
|
||||
return "`"+condition.substring(4, condition.length()-15)+".exists()";
|
||||
throw new Error("not processed yet: "+condition);
|
||||
return "`"+condition.substring(4, condition.length()-15)+"`.exists()";
|
||||
throw new Error("not processed yet: "+condition);
|
||||
}
|
||||
|
||||
private void loadMetadata(MetadataResource mr) throws FHIRException {
|
||||
|
|
@ -205,9 +243,190 @@ public class MappingSheetParser {
|
|||
mr.setDescription(metadata.get("description"));
|
||||
}
|
||||
|
||||
public static void main(String[] args) throws FileNotFoundException, IOException, FHIRException {
|
||||
MappingSheetParser parser = new MappingSheetParser(new FileInputStream("c:\\temp\\v2-pid.csv"), "v2-pid.csv");
|
||||
ConceptMap cm = parser.getConceptMap();
|
||||
|
||||
public StructureMap getStructureMap() throws FHIRException {
|
||||
StructureMap map = new StructureMap();
|
||||
loadMetadata(map);
|
||||
if (metadata.containsKey("copyright"))
|
||||
map.setCopyright(metadata.get("copyright"));
|
||||
StructureMapGroupComponent grp = map.addGroup();
|
||||
grp.setTypeMode(StructureMapGroupTypeMode.NONE);
|
||||
for (MappingRow row : rows) {
|
||||
StructureMapGroupRuleComponent rule = grp.addRule();
|
||||
rule.setName(row.getSequence());
|
||||
StructureMapGroupRuleSourceComponent src = rule.getSourceFirstRep();
|
||||
src.setContext("src");
|
||||
src.setElement(row.getIdentifier());
|
||||
src.setMin(row.getCardinalityMin());
|
||||
src.setMax(row.getCardinalityMax());
|
||||
src.setType(row.getDataType());
|
||||
src.addExtension(ToolingExtensions.EXT_MAPPING_NAME, new StringType(row.getName()));
|
||||
if (row.getCondition() != null) {
|
||||
src.setCheck(processCondition(row.getCondition()));
|
||||
}
|
||||
StructureMapGroupRuleTargetComponent tgt = rule.getTargetFirstRep();
|
||||
tgt.setContext("tgt");
|
||||
tgt.setContextType(StructureMapContextType.VARIABLE);
|
||||
tgt.setElement(row.getAttribute());
|
||||
tgt.addExtension(ToolingExtensions.EXT_MAPPING_TGTTYPE, new StringType(row.getType()));
|
||||
tgt.addExtension(ToolingExtensions.EXT_MAPPING_TGTCARD, new StringType(row.getMinMax()));
|
||||
if (row.getDtMapping() != null) {
|
||||
src.setVariable("s");
|
||||
tgt.setVariable("t");
|
||||
tgt.setTransform(StructureMapTransform.CREATE);
|
||||
StructureMapGroupRuleDependentComponent dep = rule.addDependent();
|
||||
dep.setName(row.getDtMapping());
|
||||
dep.addVariable("s");
|
||||
dep.addVariable("t");
|
||||
} else if (row.getVocabMapping() != null) {
|
||||
tgt.setTransform(StructureMapTransform.TRANSLATE);
|
||||
tgt.addParameter().setValue(new StringType(row.getVocabMapping()));
|
||||
tgt.addParameter().setValue(new IdType("src"));
|
||||
} else {
|
||||
tgt.setTransform(StructureMapTransform.COPY);
|
||||
}
|
||||
rule.setDocumentation(row.getComments());
|
||||
if (row.getDerived() != null) {
|
||||
tgt = rule.addTarget();
|
||||
tgt.setContext("tgt");
|
||||
tgt.setContextType(StructureMapContextType.VARIABLE);
|
||||
tgt.setElement(row.getDerived());
|
||||
tgt.setTransform(StructureMapTransform.COPY);
|
||||
tgt.addParameter().setValue(new StringType(row.getDerivedMapping()));
|
||||
}
|
||||
}
|
||||
return map;
|
||||
}
|
||||
|
||||
public boolean isSheet(ConceptMap cm) {
|
||||
if (cm.getGroup().size() != 1)
|
||||
return false;
|
||||
ConceptMapGroupComponent grp = cm.getGroupFirstRep();
|
||||
for (SourceElementComponent e : grp.getElement()) {
|
||||
if (!e.hasExtension(ToolingExtensions.EXT_MAPPING_TYPE))
|
||||
return false;
|
||||
}
|
||||
return true;
|
||||
}
|
||||
|
||||
public String genSheet(ConceptMap cm) throws FHIRException {
|
||||
StringBuilder b = new StringBuilder();
|
||||
readConceptMap(cm);
|
||||
b.append("<table class=\"grid\">\r\n");
|
||||
addHeaderRow1(b);
|
||||
addHeaderRow2(b);
|
||||
for (MappingRow row : rows)
|
||||
addRow(b, row);
|
||||
b.append("</table>\r\n");
|
||||
return b.toString();
|
||||
}
|
||||
|
||||
private void addRow(StringBuilder b, MappingRow row) {
|
||||
b.append(" <tr>");
|
||||
b.append("<td>"+Utilities.escapeXml(nn(row.sequence))+"</td>");
|
||||
b.append("<td>"+Utilities.escapeXml(nn(row.identifier))+"</td>");
|
||||
b.append("<td>"+Utilities.escapeXml(nn(row.name))+"</td>");
|
||||
b.append("<td>"+Utilities.escapeXml(nn(row.dataType))+"</td>");
|
||||
b.append("<td>"+Utilities.escapeXml(nn(row.cardinality))+"</td>");
|
||||
b.append("<td>"+Utilities.escapeXml(nn(row.condition))+"</td>");
|
||||
b.append("<td>"+Utilities.escapeXml(nn(row.attribute))+"</td>");
|
||||
b.append("<td>"+Utilities.escapeXml(nn(row.type))+"</td>");
|
||||
b.append("<td>"+Utilities.escapeXml(nn(row.minMax))+"</td>");
|
||||
b.append("<td>"+Utilities.escapeXml(nn(row.dtMapping))+"</td>");
|
||||
b.append("<td>"+Utilities.escapeXml(nn(row.vocabMapping))+"</td>");
|
||||
if (row.derived != null)
|
||||
b.append("<td>"+Utilities.escapeXml(nn(row.derived+"="+row.derivedMapping))+"</td>");
|
||||
else
|
||||
b.append("<td></td>");
|
||||
b.append("<td>"+Utilities.escapeXml(nn(row.comments))+"</td>");
|
||||
b.append("</tr>\r\n");
|
||||
|
||||
}
|
||||
|
||||
private String nn(String s) {
|
||||
return s == null ? "" : s;
|
||||
}
|
||||
|
||||
private void addHeaderRow1(StringBuilder b) {
|
||||
b.append(" <tr>");
|
||||
b.append("<td colspan=\"5\" style=\"background-color: lightgreen\"><b>v2</b></td>");
|
||||
b.append("<td colspan=\"1\"><b>Condition</b></td>");
|
||||
b.append("<td colspan=\"6\" style=\"background-color: orange\"><b>FHIR</b></td>");
|
||||
b.append("<td colspan=\"1\"><b>Comments</b></td>");
|
||||
b.append("</tr>\r\n");
|
||||
}
|
||||
|
||||
private void addHeaderRow2(StringBuilder b) {
|
||||
b.append(" <tr>");
|
||||
b.append("<td style=\"background-color: lightgreen\"><b>Display Sequence</b></td>");
|
||||
b.append("<td style=\"background-color: lightgreen\"><b>Identifier</b></td>");
|
||||
b.append("<td style=\"background-color: lightgreen\"><b>Name</b></td>");
|
||||
b.append("<td style=\"background-color: lightgreen\"><b>Data Type</b></td>");
|
||||
b.append("<td style=\"background-color: lightgreen\"><b>Cardinality</b></td>");
|
||||
b.append("<td><b></b></td>");
|
||||
b.append("<td style=\"background-color: orange\"><b>FHIR Attribute</b></td>");
|
||||
b.append("<td style=\"background-color: orange\"><b>Data Type</b></td>");
|
||||
b.append("<td style=\"background-color: orange\"><b>Cardinality</b></td>");
|
||||
b.append("<td style=\"background-color: orange\"><b>Data Type Mapping</b></td>");
|
||||
b.append("<td style=\"background-color: orange\"><b>Vocabulary Mapping</b></td>");
|
||||
b.append("<td style=\"background-color: orange\"><b>Derived Mapping</b></td>");
|
||||
b.append("<td><b></b></td>");
|
||||
b.append("</tr>\r\n");
|
||||
}
|
||||
|
||||
private void readConceptMap(ConceptMap cm) throws FHIRException {
|
||||
for (ConceptMapGroupComponent g : cm.getGroup()) {
|
||||
for (SourceElementComponent e : g.getElement()) {
|
||||
if (e.hasId() && e.getTarget().size() == 1 && e.hasExtension(ToolingExtensions.EXT_MAPPING_TYPE)) {
|
||||
TargetElementComponent t = e.getTargetFirstRep();
|
||||
MappingRow row = new MappingRow();
|
||||
row.sequence = e.getId();
|
||||
row.identifier = e.getCode();
|
||||
row.name = e.getExtensionString(ToolingExtensions.EXT_MAPPING_NAME);
|
||||
row.dataType = e.getExtensionString(ToolingExtensions.EXT_MAPPING_TYPE);
|
||||
row.cardinality = e.getExtensionString(ToolingExtensions.EXT_MAPPING_CARD);
|
||||
if (t.getEquivalence() == ConceptMapEquivalence.UNMATCHED) {
|
||||
row.attribute = "N/A";
|
||||
} else {
|
||||
OtherElementComponent dep = getDependency(t, "http://hl7.org/fhirpath");
|
||||
if (dep != null)
|
||||
row.condition = dep.getValue();
|
||||
row.attribute = t.getCode();
|
||||
row.type = t.getExtensionString(ToolingExtensions.EXT_MAPPING_TGTTYPE);
|
||||
row.minMax = t.getExtensionString(ToolingExtensions.EXT_MAPPING_TGTCARD);
|
||||
row.dtMapping = t.getExtensionString("http://hl7.org/fhir/StructureDefinition/ConceptMap-type-mapping");
|
||||
row.vocabMapping = t.getExtensionString("http://hl7.org/fhir/StructureDefinition/ConceptMap-vocab-mapping");
|
||||
if (t.getProduct().size() > 0) {
|
||||
row.derived = t.getProductFirstRep().getProperty();
|
||||
row.derivedMapping = t.getProductFirstRep().getValue();
|
||||
}
|
||||
}
|
||||
row.comments = t.getComment();
|
||||
rows.add(row);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private OtherElementComponent getDependency(TargetElementComponent t, String prop) {
|
||||
for (OtherElementComponent dep : t.getDependsOn()) {
|
||||
if (prop.equals(dep.getProperty()))
|
||||
return dep;
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
private static final String PFX = "<html><link rel=\"stylesheet\" href=\"file:c:\\work\\org.hl7.fhir\\build\\publish\\fhir.css\"/></head><body>\r\n";
|
||||
private static final String SFX = "<body></html>";
|
||||
public static void main(String[] args) throws FileNotFoundException, IOException, FHIRException {
|
||||
MappingSheetParser parser = new MappingSheetParser();
|
||||
parser.parse(new FileInputStream("c:\\temp\\v2-pid.csv"), "v2-pid.csv");
|
||||
ConceptMap cm = parser.getConceptMap();
|
||||
StructureMap sm = parser.getStructureMap();
|
||||
new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream("c:\\temp\\sm.json"), sm);
|
||||
new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream("c:\\temp\\cm.json"), cm);
|
||||
TextFile.stringToFile(StructureMapUtilities.render(sm), "c:\\temp\\sm.txt");
|
||||
TextFile.stringToFile(PFX+parser.genSheet(cm)+SFX, "c:\\temp\\map.html");
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -2833,7 +2833,7 @@ public class NarrativeGenerator implements INarrativeGenerator {
|
|||
}
|
||||
|
||||
private boolean isSource(ValueSet vs, Type source) {
|
||||
return vs.hasUrl() && vs.getUrl().equals(source.primitiveValue());
|
||||
return vs.hasUrl() && source != null && vs.getUrl().equals(source.primitiveValue());
|
||||
}
|
||||
|
||||
private Integer countMembership(ValueSet vs) {
|
||||
|
|
@ -4076,7 +4076,8 @@ public class NarrativeGenerator implements INarrativeGenerator {
|
|||
inject(ig, x, NarrativeStatus.GENERATED);
|
||||
return true;
|
||||
}
|
||||
public boolean generate(ResourceContext rcontext, OperationDefinition opd) throws EOperationOutcome, FHIRException, IOException {
|
||||
|
||||
public boolean generate(ResourceContext rcontext, OperationDefinition opd) throws EOperationOutcome, FHIRException, IOException {
|
||||
XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
|
||||
x.h2().addText(opd.getName());
|
||||
x.para().addText(Utilities.capitalize(opd.getKind().toString())+": "+opd.getName());
|
||||
|
|
|
|||
|
|
@ -416,14 +416,16 @@ public class StructureMapUtilities {
|
|||
b.append(g.getExtends());
|
||||
}
|
||||
|
||||
switch (g.getTypeMode()) {
|
||||
case TYPES:
|
||||
b.append(" <<types>>");
|
||||
break;
|
||||
case TYPEANDTYPES:
|
||||
b.append(" <<type+>>");
|
||||
break;
|
||||
default: // NONE, NULL
|
||||
if (g.hasTypeMode()) {
|
||||
switch (g.getTypeMode()) {
|
||||
case TYPES:
|
||||
b.append(" <<types>>");
|
||||
break;
|
||||
case TYPEANDTYPES:
|
||||
b.append(" <<type+>>");
|
||||
break;
|
||||
default: // NONE, NULL
|
||||
}
|
||||
}
|
||||
b.append(" {\r\n");
|
||||
for (StructureMapGroupRuleComponent r : g.getRule()) {
|
||||
|
|
|
|||
|
|
@ -148,14 +148,20 @@ public class ToolingExtensions {
|
|||
public static final String EXT_IGP_RESOURCES = "http://hl7.org/fhir/StructureDefinition/igpublisher-folder-resource";
|
||||
public static final String EXT_IGP_PAGES = "http://hl7.org/fhir/StructureDefinition/igpublisher-folder-pages";
|
||||
public static final String EXT_IGP_SPREADSHEET = "http://hl7.org/fhir/StructureDefinition/igpublisher-spreadsheet";
|
||||
public static final String EXT_IGP_MAPPING_CSV = "http://hl7.org/fhir/StructureDefinition/igpublisher-mapping-csv";
|
||||
public static final String EXT_IGP_BUNDLE = "http://hl7.org/fhir/StructureDefinition/igpublisher-bundle";
|
||||
public static final String EXT_IGP_RESOURCE_INFO = "http://tools.fhir.org/StructureDefinition/resource-information";
|
||||
public static final String EXT_IGP_RESOURCE_INFO = "http://hl7.org/fhir/tools/StructureDefinition/resource-information";
|
||||
public static final String EXT_IGP_LOADVERSION = "http://hl7.org/fhir/StructureDefinition/igpublisher-loadversion";
|
||||
public static final String EXT_MAX_VALUESET = "http://hl7.org/fhir/StructureDefinition/elementdefinition-maxValueSet";
|
||||
public static final String EXT_MIN_VALUESET = "http://hl7.org/fhir/StructureDefinition/elementdefinition-minValueSet";
|
||||
public static final String EXT_PROFILE_ELEMENT = "http://hl7.org/fhir/StructureDefinition/elementdefinition-profile-element";
|
||||
public static final String EXT_LIST_PACKAGE = "http://hl7.org/fhir/StructureDefinition/list-packageId";
|
||||
|
||||
public static final String EXT_MAPPING_NAME = "http://hl7.org/fhir/tools/StructureDefinition/conceptmap-source-name";
|
||||
public static final String EXT_MAPPING_TYPE = "http://hl7.org/fhir/tools/StructureDefinition/conceptmap-source-type";
|
||||
public static final String EXT_MAPPING_CARD = "http://hl7.org/fhir/tools/StructureDefinition/conceptmap-source-cardinality";
|
||||
public static final String EXT_MAPPING_TGTTYPE = "http://hl7.org/fhir/tools/StructureDefinition/conceptmap-target-type";
|
||||
public static final String EXT_MAPPING_TGTCARD = "http://hl7.org/fhir/tools/StructureDefinition/conceptmap-target-cardinality";
|
||||
public static final String EXT_PRIVATE_BASE = "http://hl7.org/fhir/tools/";
|
||||
|
||||
// specific extension helpers
|
||||
|
||||
|
|
|
|||
|
|
@ -0,0 +1,33 @@
|
|||
package org.hl7.fhir.r5.utils;
|
||||
|
||||
import java.io.FileInputStream;
|
||||
import java.io.FileNotFoundException;
|
||||
import java.io.FileOutputStream;
|
||||
import java.io.IOException;
|
||||
|
||||
import org.hl7.fhir.exceptions.FHIRFormatError;
|
||||
import org.hl7.fhir.r5.formats.JsonParser;
|
||||
import org.hl7.fhir.r5.model.Bundle;
|
||||
import org.hl7.fhir.r5.model.Bundle.BundleEntryComponent;
|
||||
import org.hl7.fhir.r5.model.Resource;
|
||||
import org.hl7.fhir.utilities.Utilities;
|
||||
|
||||
public class Unbundler {
|
||||
|
||||
public static void main(String[] args) throws Exception {
|
||||
unbundle(args[0]);
|
||||
}
|
||||
|
||||
private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
|
||||
String folder = Utilities.getDirectoryForFile(src);
|
||||
Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
|
||||
for (BundleEntryComponent be : bnd.getEntry()) {
|
||||
Resource r = be.getResource();
|
||||
if (r != null) {
|
||||
String tgt = Utilities.path(folder, r.fhirType()+"-"+r.getId()+".json");
|
||||
new JsonParser().compose(new FileOutputStream(tgt), r);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -47,8 +47,8 @@
|
|||
42. Choice Types: constrain list of choices to 1
|
||||
43. Choice Types: constrain list of choices to 1 and constrain the type (slicing)
|
||||
44. Choice Types: constrain list of choices to 1 and constrain the type (shortcut)
|
||||
43. Choice Types: constrain list of choices to 2 and constrain the types (slicing)
|
||||
44. Choice Types: constrain list of choices to 2 and constrain the types (shortcut)
|
||||
45. Choice Types: constrain list of choices to 2 and constrain the types (slicing)
|
||||
46. Choice Types: constrain list of choices to 2 and constrain the types (shortcut)
|
||||
-->
|
||||
<contained>
|
||||
<StructureDefinition>
|
||||
|
|
@ -1948,7 +1948,7 @@
|
|||
<contained>
|
||||
<StructureDefinition>
|
||||
<id value="t39"/>
|
||||
<url value="urn:uuid:"/>
|
||||
<url value="urn:uuid:9756f0c4-6818-4549-ad46-dfad96c371b1"/>
|
||||
<name value="t39"/>
|
||||
<status value="draft"/>
|
||||
<description value="fixture for #39: Choice types: no constraint"/>
|
||||
|
|
@ -1973,7 +1973,7 @@
|
|||
<contained>
|
||||
<StructureDefinition>
|
||||
<id value="t40"/>
|
||||
<url value="urn:uuid:"/>
|
||||
<url value="urn:uuid:9"/>
|
||||
<name value="t40"/>
|
||||
<status value="draft"/>
|
||||
<description value="fixture for #40: Choice Types: constrain minimum cardinality"/>
|
||||
|
|
@ -1999,7 +1999,7 @@
|
|||
<contained>
|
||||
<StructureDefinition>
|
||||
<id value="t41"/>
|
||||
<url value="urn:uuid:"/>
|
||||
<url value="urn:uuid:4485cada-4667-4460-937d-f2dbe6e73f1d"/>
|
||||
<name value="t41"/>
|
||||
<status value="draft"/>
|
||||
<description value="fixture for #41: Choice Types: constrain list of choices to 2"/>
|
||||
|
|
@ -2030,7 +2030,7 @@
|
|||
<contained>
|
||||
<StructureDefinition>
|
||||
<id value="t42"/>
|
||||
<url value="urn:uuid:"/>
|
||||
<url value="urn:uuid:5eb149bd-b2f3-4d63-80d2-4d7fccbd76db"/>
|
||||
<name value="t42"/>
|
||||
<status value="draft"/>
|
||||
<description value="fixture for #42: Choice Types: constrain list of choices to 1"/>
|
||||
|
|
@ -2058,7 +2058,7 @@
|
|||
<contained>
|
||||
<StructureDefinition>
|
||||
<id value="t43"/>
|
||||
<url value="urn:uuid:"/>
|
||||
<url value="urn:uuid:4caab1de-9278-4783-810c-472c3071f7fd"/>
|
||||
<name value="t43"/>
|
||||
<status value="draft"/>
|
||||
<description value="fixture for #43: Choice Types: constrain list of choices to 1 and constrain the type (slicing)"/>
|
||||
|
|
@ -2104,7 +2104,7 @@
|
|||
<contained>
|
||||
<StructureDefinition>
|
||||
<id value="t44"/>
|
||||
<url value="urn:uuid:"/>
|
||||
<url value="urn:uuid:ecb6f563-2957-4da8-832e-cb6d94329a93"/>
|
||||
<name value="t44"/>
|
||||
<status value="draft"/>
|
||||
<description value="fixture for #44: Choice Types: constrain list of choices to 1 and constrain the type (shortcut)"/>
|
||||
|
|
@ -2136,14 +2136,14 @@
|
|||
</StructureDefinition>
|
||||
</contained>
|
||||
|
||||
<!-- 43. Choice Types: constrain list of choices to 2 and constrain the types (slicing) -->
|
||||
<!-- 45. Choice Types: constrain list of choices to 2 and constrain the types (slicing) -->
|
||||
<contained>
|
||||
<StructureDefinition>
|
||||
<id value="t43"/>
|
||||
<url value="urn:uuid:"/>
|
||||
<name value="t43"/>
|
||||
<id value="t45"/>
|
||||
<url value="urn:uuid:48b311a6-060c-44f8-8c62-d0abdf39ccb5"/>
|
||||
<name value="t45"/>
|
||||
<status value="draft"/>
|
||||
<description value="fixture for #43: Choice Types: constrain list of choices to 2 and constrain the types (slicing)"/>
|
||||
<description value="fixture for #45: Choice Types: constrain list of choices to 2 and constrain the types (slicing)"/>
|
||||
<kind value="resource"/>
|
||||
<abstract value="false"/>
|
||||
<type value="Observation"/>
|
||||
|
|
@ -2194,14 +2194,14 @@
|
|||
</StructureDefinition>
|
||||
</contained>
|
||||
|
||||
<!-- 44. Choice Types: constrain list of choices to 2 and constrain the types (shortcut) -->
|
||||
<!-- 46. Choice Types: constrain list of choices to 2 and constrain the types (shortcut) -->
|
||||
<contained>
|
||||
<StructureDefinition>
|
||||
<id value="t44"/>
|
||||
<url value="urn:uuid:"/>
|
||||
<name value="t44"/>
|
||||
<id value="t46"/>
|
||||
<url value="urn:uuid:1fd72ec3-baa8-4cc9-b8d4-13f4f5fdb2af"/>
|
||||
<name value="t46"/>
|
||||
<status value="draft"/>
|
||||
<description value="fixture for #44: Choice Types: constrain list of choices to 2 and constrain the types (shortcut)"/>
|
||||
<description value="fixture for #46: Choice Types: constrain list of choices to 2 and constrain the types (shortcut)"/>
|
||||
<kind value="resource"/>
|
||||
<abstract value="false"/>
|
||||
<type value="Observation"/>
|
||||
|
|
|
|||
Loading…
Reference in New Issue