add testing ontoserver to test suite
This commit is contained in:
Grahame Grieve
parent
29442c0b1d
commit
0645c79eb6
|
|
@ -0,0 +1,169 @@
|
|||
package org.hl7.fhir.terminology.tests;
|
||||
|
||||
import java.io.File;
|
||||
import java.io.FileNotFoundException;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.util.*;
|
||||
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.hl7.fhir.convertors.factory.VersionConvertorFactory_10_50;
|
||||
import org.hl7.fhir.convertors.factory.VersionConvertorFactory_14_50;
|
||||
import org.hl7.fhir.convertors.factory.VersionConvertorFactory_30_50;
|
||||
import org.hl7.fhir.convertors.factory.VersionConvertorFactory_40_50;
|
||||
import org.hl7.fhir.exceptions.DefinitionException;
|
||||
import org.hl7.fhir.exceptions.FHIRException;
|
||||
import org.hl7.fhir.exceptions.FHIRFormatError;
|
||||
import org.hl7.fhir.r5.formats.JsonParser;
|
||||
import org.hl7.fhir.r5.formats.XmlParser;
|
||||
import org.hl7.fhir.r5.model.Constants;
|
||||
import org.hl7.fhir.r5.model.Resource;
|
||||
import org.hl7.fhir.r5.test.utils.TestingUtilities;
|
||||
import org.hl7.fhir.utilities.Utilities;
|
||||
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
||||
import org.hl7.fhir.utilities.json.model.JsonObject;
|
||||
import org.hl7.fhir.utilities.settings.FhirSettings;
|
||||
import org.hl7.fhir.utilities.tests.TestConfig;
|
||||
import org.hl7.fhir.validation.special.TxTester;
|
||||
import org.hl7.fhir.validation.special.TxTester.ITxTesterLoader;
|
||||
import org.hl7.fhir.validation.tests.utilities.TestUtilities;
|
||||
import org.junit.Test;
|
||||
import org.junit.jupiter.api.Assertions;
|
||||
import org.junit.runner.RunWith;
|
||||
import org.junit.runners.Parameterized;
|
||||
import org.junit.runners.Parameterized.Parameters;
|
||||
|
||||
import com.google.common.base.Charsets;
|
||||
|
||||
@RunWith(Parameterized.class)
|
||||
|
||||
public class OntoserverTests implements ITxTesterLoader {
|
||||
|
||||
public static class JsonObjectPair {
|
||||
public JsonObjectPair(JsonObject suite, JsonObject test) {
|
||||
this.suite = suite;
|
||||
this.test = test;
|
||||
}
|
||||
private JsonObject suite;
|
||||
private JsonObject test;
|
||||
}
|
||||
|
||||
private static final String SERVER = "https://tx.ontoserver.csiro.au/fhir";
|
||||
|
||||
private static boolean localTxRunning() throws IOException {
|
||||
return ManagedFileAccess.file("/Users/grahamegrieve/work/server/server").exists();
|
||||
}
|
||||
|
||||
|
||||
|
||||
@Parameters(name = "{index}: id {0}")
|
||||
public static Iterable<Object[]> data() throws IOException {
|
||||
|
||||
String contents = TestingUtilities.loadTestResource("tx", "test-cases.json");
|
||||
externals = org.hl7.fhir.utilities.json.parser.JsonParser.parseObject(TestingUtilities.loadTestResource("tx", "messages-tx.fhir.org.json"));
|
||||
|
||||
Map<String, JsonObjectPair> examples = new HashMap<String, JsonObjectPair>();
|
||||
manifest = org.hl7.fhir.utilities.json.parser.JsonParser.parseObject(contents);
|
||||
for (org.hl7.fhir.utilities.json.model.JsonObject suite : manifest.getJsonObjects("suites")) {
|
||||
String sn = suite.asString("name");
|
||||
for (org.hl7.fhir.utilities.json.model.JsonObject test : suite.getJsonObjects("tests")) {
|
||||
String tn = test.asString("name");
|
||||
examples.put(sn+"."+tn, new JsonObjectPair(suite, test));
|
||||
}
|
||||
}
|
||||
|
||||
List<String> names = new ArrayList<String>(examples.size());
|
||||
names.addAll(examples.keySet());
|
||||
Collections.sort(names);
|
||||
|
||||
List<Object[]> objects = new ArrayList<Object[]>(examples.size());
|
||||
for (String id : names) {
|
||||
objects.add(new Object[]{id, examples.get(id)});
|
||||
}
|
||||
return objects;
|
||||
}
|
||||
|
||||
private static org.hl7.fhir.utilities.json.model.JsonObject manifest;
|
||||
private static org.hl7.fhir.utilities.json.model.JsonObject externals;
|
||||
private JsonObjectPair setup;
|
||||
private String version = "5.0.0";
|
||||
private static TxTester tester;
|
||||
private List<String> modes = new ArrayList<>();
|
||||
|
||||
public OntoserverTests(String name, JsonObjectPair setup) {
|
||||
this.setup = setup;
|
||||
modes.add("flat");
|
||||
}
|
||||
|
||||
@SuppressWarnings("deprecation")
|
||||
@Test
|
||||
public void test() throws Exception {
|
||||
if (TestUtilities.runningAsSurefire()) {
|
||||
logTestSkip("Running in surefire.");
|
||||
return;
|
||||
}
|
||||
if (!localTxRunning()) {
|
||||
logTestSkip("No local terminology server available.");
|
||||
return;
|
||||
}
|
||||
if (tester == null) {
|
||||
tester = new TxTester(this, SERVER, true, externals);
|
||||
}
|
||||
String err = tester.executeTest(setup.suite, setup.test, modes);
|
||||
Assertions.assertTrue(true); // we don't care what the result is, only that we didn't crash
|
||||
|
||||
}
|
||||
|
||||
private void logTestSkip(String reason) {
|
||||
System.out.println("Skipping test: " + setup.suite.asString("name") + " " + setup.test.asString("name") + " reason: " + reason);
|
||||
}
|
||||
|
||||
public Resource loadResource(String filename) throws IOException, FHIRFormatError, FileNotFoundException, FHIRException, DefinitionException {
|
||||
String contents = TestingUtilities.loadTestResource("tx", filename);
|
||||
Resource res = null;
|
||||
try (InputStream inputStream = IOUtils.toInputStream(contents, Charsets.UTF_8)) {
|
||||
if (filename.contains(".json")) {
|
||||
if (Constants.VERSION.equals(version) || "5.0".equals(version))
|
||||
res = new JsonParser().parse(inputStream);
|
||||
else if (org.hl7.fhir.dstu3.model.Constants.VERSION.equals(version) || "3.0".equals(version))
|
||||
res = VersionConvertorFactory_30_50.convertResource(new org.hl7.fhir.dstu3.formats.JsonParser().parse(inputStream));
|
||||
else if (org.hl7.fhir.dstu2016may.model.Constants.VERSION.equals(version) || "1.4".equals(version))
|
||||
res = VersionConvertorFactory_14_50.convertResource(new org.hl7.fhir.dstu2016may.formats.JsonParser().parse(inputStream));
|
||||
else if (org.hl7.fhir.dstu2.model.Constants.VERSION.equals(version) || "1.0".equals(version))
|
||||
res = VersionConvertorFactory_10_50.convertResource(new org.hl7.fhir.dstu2.formats.JsonParser().parse(inputStream));
|
||||
else if (org.hl7.fhir.r4.model.Constants.VERSION.equals(version) || "4.0".equals(version))
|
||||
res = VersionConvertorFactory_40_50.convertResource(new org.hl7.fhir.r4.formats.JsonParser().parse(inputStream));
|
||||
else
|
||||
throw new FHIRException("unknown version " + version);
|
||||
} else {
|
||||
if (Constants.VERSION.equals(version) || "5.0".equals(version))
|
||||
res = new XmlParser().parse(inputStream);
|
||||
else if (org.hl7.fhir.dstu3.model.Constants.VERSION.equals(version) || "3.0".equals(version))
|
||||
res = VersionConvertorFactory_30_50.convertResource(new org.hl7.fhir.dstu3.formats.XmlParser().parse(inputStream));
|
||||
else if (org.hl7.fhir.dstu2016may.model.Constants.VERSION.equals(version) || "1.4".equals(version))
|
||||
res = VersionConvertorFactory_14_50.convertResource(new org.hl7.fhir.dstu2016may.formats.XmlParser().parse(inputStream));
|
||||
else if (org.hl7.fhir.dstu2.model.Constants.VERSION.equals(version) || "1.0".equals(version))
|
||||
res = VersionConvertorFactory_10_50.convertResource(new org.hl7.fhir.dstu2.formats.XmlParser().parse(inputStream));
|
||||
else if (org.hl7.fhir.r4.model.Constants.VERSION.equals(version) || "4.0".equals(version))
|
||||
res = VersionConvertorFactory_40_50.convertResource(new org.hl7.fhir.r4.formats.XmlParser().parse(inputStream));
|
||||
else
|
||||
throw new FHIRException("unknown version " + version);
|
||||
}
|
||||
}
|
||||
org.hl7.fhir.r4.model.Resource r4 = VersionConvertorFactory_40_50.convertResource(res);
|
||||
String p = Utilities.path(FhirSettings.getFhirTestCasesPath(), "tx", "r4", filename);
|
||||
Utilities.createDirectory(Utilities.getDirectoryForFile(p));
|
||||
new org.hl7.fhir.r4.formats.JsonParser().compose(ManagedFileAccess.outStream(p), r4);
|
||||
return res;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String describe() {
|
||||
return "Test cases";
|
||||
}
|
||||
|
||||
@Override
|
||||
public byte[] loadContent(String filename) throws FileNotFoundException, IOException {
|
||||
return TestingUtilities.loadTestResourceBytes("tx", filename);
|
||||
}
|
||||
}
|
||||
Loading…
Reference in New Issue