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Merge pull request #1167 from hapifhir/gg-202303-misc3 

Gg 202303 misc3
This commit is contained in:
Grahame Grieve 2023-03-13 06:36:00 +11:00 committed by GitHub
parent 209fcc8c0b 7b30dc02f9
commit 07a3962ac2
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GPG Key ID: 4AEE18F83AFDEB23
9 changed files with 64 additions and 23 deletions
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8
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/conformance/profile/ProfileUtilities.java
View File

@ -3906,5 +3906,13 @@ public class ProfileUtilities extends TranslatingUtilities {
this.allowUnknownProfile = allowUnknownProfile;
}
public static boolean isSimpleExtension(StructureDefinition sd) {
if (!isExtensionDefinition(sd)) {
return false;
}
ElementDefinition value = sd.getSnapshot().getElementByPath("Extension.value");
return value != null && !value.isProhibited();
}
}

8
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/elementmodel/FmlParser.java
View File

@ -83,8 +83,14 @@ public class FmlParser extends ParserBase {
if (!result.hasChild("status")) {
result.makeElement("status").setValue("draft");
}
if (!result.hasChild("id") && result.hasChild("name")) {
String id = Utilities.makeId(result.getChildValue("name"));
if (!Utilities.noString(id)) {
result.makeElement("id").setValue(id);
}
}
if (!result.hasChild("description") && result.hasChild("title")) {
result.makeElement("description").setValue(result.getChildValue("title"));
result.makeElement("description").setValue(Utilities.makeId(result.getChildValue("title")));
}
while (lexer.hasToken("conceptmap"))

5
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/model/StructureDefinition.java
View File

@ -1234,8 +1234,11 @@ public class StructureDefinition extends CanonicalResource {
// added from java-adornments.txt:
public ElementDefinition getElementByPath(String path) {
if (path == null) {
return null;
}
for (ElementDefinition ed : getElement()) {
if (path.equals(ed.getPath())) {
if (path.equals(ed.getPath()) || (path+"[x]").equals(ed.getPath())) {
return ed;
}
}

29
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/renderers/StructureMapRenderer.java
View File

@ -10,6 +10,7 @@ import java.util.Map;
import java.util.Set;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.r5.model.CodeSystem;
import org.hl7.fhir.r5.model.CodeType;
import org.hl7.fhir.r5.model.ConceptMap;
import org.hl7.fhir.r5.model.Enumeration;
@ -155,7 +156,12 @@ public class StructureMapRenderer extends TerminologyRenderer {
x.b().tx(" prefix ");
x.tx(""+prefix);
x.color(COLOR_SYNTAX).tx(" = \"");
x.tx(cg.getSource());
CodeSystem cs = context.getContext().fetchResource(CodeSystem.class, cg.getSource());
if (cs != null && cs.hasUserData("path")) {
x.ah(cs.getUserString("path"), cs.present()).tx(cg.getSource());
} else {
x.tx(cg.getSource());
}
x.color(COLOR_SYNTAX).tx("\"\r\n");
prefix++;
}
@ -164,7 +170,12 @@ public class StructureMapRenderer extends TerminologyRenderer {
x.b().tx(" prefix ");
x.tx(""+prefix);
x.color(COLOR_SYNTAX).tx(" = \"");
x.tx(""+cg.getTarget());
CodeSystem cs = context.getContext().fetchResource(CodeSystem.class, cg.getTarget());
if (cs != null && cs.hasUserData("path")) {
x.ah(cs.getUserString("path"), cs.present()).tx(cg.getTarget());
} else {
x.tx(""+cg.getTarget());
}
x.color(COLOR_SYNTAX).tx("\"\r\n");
prefix++;
}
@ -247,7 +258,12 @@ public class StructureMapRenderer extends TerminologyRenderer {
for (StructureMapStructureComponent s : map.getStructure()) {
x.b().tx("uses");
x.color(COLOR_SYNTAX).tx(" \"");
x.tx(s.getUrl());
StructureDefinition sd = context.getContext().fetchResource(StructureDefinition.class, s.getUrl());
if (sd != null && sd.hasUserData("path")) {
x.ah(sd.getUserString("path"), sd.present()).tx(s.getUrl());
} else {
x.tx(s.getUrl());
}
x.color(COLOR_SYNTAX).tx("\" ");
if (s.hasAlias()) {
x.b().tx("alias ");
@ -267,7 +283,12 @@ public class StructureMapRenderer extends TerminologyRenderer {
for (UriType s : map.getImport()) {
x.b().tx("imports");
x.color(COLOR_SYNTAX).tx(" \"");
x.tx(s.getValue());
StructureMap m = context.getContext().fetchResource(StructureMap.class, s.getValue());
if (m != null) {
x.ah(m.getUserString("path"), m.present()).tx(s.getValue());
} else {
x.tx(s.getValue());
}
x.color(COLOR_SYNTAX).tx("\"\r\n");
}
if (map.hasImport())

14
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/utils/FHIRPathEngine.java
View File

@ -5027,10 +5027,11 @@ public class FHIRPathEngine {
if (s != null) {
Base res = null;
if (s.startsWith("#")) {
String t = s.substring(1);
Property p = context.rootResource.getChildByName("contained");
if (p != null) {
for (Base c : p.getValues()) {
if (chompHash(s).equals(chompHash(c.getIdBase()))) {
if (t.equals(c.getIdBase())) {
res = c;
break;
}
@ -5052,17 +5053,6 @@ public class FHIRPathEngine {
return result;
}
/**
* Strips a leading hashmark (#) if present at the start of a string
*/
private String chompHash(String theId) {
String retVal = theId;
while (retVal.startsWith("#")) {
retVal = retVal.substring(1);
}
return retVal;
}
private List<Base> funcExtension(ExecutionContext context, List<Base> focus, ExpressionNode exp) throws FHIRException {
List<Base> result = new ArrayList<Base>();
List<Base> nl = execute(context, focus, exp.getParameters().get(0), true);

13
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/utils/structuremap/StructureMapUtilities.java
View File

@ -664,6 +664,19 @@ public class StructureMapUtilities {
}
}
}
if (!result.hasId() && result.hasName()) {
String id = Utilities.makeId(result.getName());
if (Utilities.noString(id)) {
result.setId(id);
}
}
if (!result.hasStatus()) {
result.setStatus(PublicationStatus.DRAFT);
}
if (!result.hasDescription() && result.hasTitle()) {
result.setDescription(result.getTitle());
}
while (lexer.hasToken("conceptmap"))
parseConceptMap(result, lexer);

4
org.hl7.fhir.utilities/src/main/resources/Messages.properties
View File

@ -130,8 +130,8 @@ Reference_REF_NotFound_Bundle = Bundled or contained reference not found within
Reference_REF_ResourceType = Matching reference for reference {0} has resourceType {1}
Reference_REF_WrongTarget = The type ''{0}'' is not a valid Target for this element (must be one of {1})
REFERENCE_REF_WRONGTARGET_LOAD = The type ''{2}'' is not a valid Target for the element {0} (must be {1})
Resource_RES_ID_Malformed_Length = Invalid Resource id: Too long
Resource_RES_ID_Malformed_Chars = Invalid Resource id: Invalid Characters
Resource_RES_ID_Malformed_Length = Invalid Resource id: Too long ({0} chars)
Resource_RES_ID_Malformed_Chars = Invalid Resource id: Invalid Characters (''{0}'')
Resource_RES_ID_Missing = Resource requires an id, but none is present
Resource_RES_ID_Prohibited = Resource has an id, but none is allowed
Terminology_PassThrough_TX_Message = {0} for ''{1}#{2}''

4
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/InstanceValidator.java
View File

@ -6222,9 +6222,9 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
if (eid.getProperty() != null && eid.getProperty().getDefinition() != null && eid.getProperty().getDefinition().getBase().getPath().equals("Resource.id")) {
NodeStack ns = stack.push(eid, -1, eid.getProperty().getDefinition(), null);
if (eid.primitiveValue() != null && eid.primitiveValue().length() > 64) {
ok = rule(errors, NO_RULE_DATE, IssueType.INVALID, eid.line(), eid.col(), ns.getLiteralPath(), false, I18nConstants.RESOURCE_RES_ID_MALFORMED_LENGTH) && ok;
ok = rule(errors, NO_RULE_DATE, IssueType.INVALID, eid.line(), eid.col(), ns.getLiteralPath(), false, I18nConstants.RESOURCE_RES_ID_MALFORMED_LENGTH, eid.primitiveValue().length()) && ok;
} else {
ok = rule(errors, NO_RULE_DATE, IssueType.INVALID, eid.line(), eid.col(), ns.getLiteralPath(), FormatUtilities.isValidId(eid.primitiveValue()), I18nConstants.RESOURCE_RES_ID_MALFORMED_CHARS) && ok;
ok = rule(errors, NO_RULE_DATE, IssueType.INVALID, eid.line(), eid.col(), ns.getLiteralPath(), FormatUtilities.isValidId(eid.primitiveValue()), I18nConstants.RESOURCE_RES_ID_MALFORMED_CHARS, eid.primitiveValue()) && ok;
}
}
}

2
pom.xml
View File

@ -19,7 +19,7 @@
<properties>
<hapi_fhir_version>6.2.1</hapi_fhir_version>
<validator_test_case_version>1.2.19</validator_test_case_version>
<validator_test_case_version>1.2.20-SNAPSHOT</validator_test_case_version>
<junit_jupiter_version>5.7.1</junit_jupiter_version>
<junit_platform_launcher_version>1.8.2</junit_platform_launcher_version>
<maven_surefire_version>3.0.0-M5</maven_surefire_version>