Merge pull request #1167 from hapifhir/gg-202303-misc3

Gg 202303 misc3
This commit is contained in:
Grahame Grieve 2023-03-13 06:36:00 +11:00 committed by GitHub
commit 07a3962ac2
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9 changed files with 64 additions and 23 deletions

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@ -3906,5 +3906,13 @@ public class ProfileUtilities extends TranslatingUtilities {
this.allowUnknownProfile = allowUnknownProfile; this.allowUnknownProfile = allowUnknownProfile;
} }
public static boolean isSimpleExtension(StructureDefinition sd) {
if (!isExtensionDefinition(sd)) {
return false;
}
ElementDefinition value = sd.getSnapshot().getElementByPath("Extension.value");
return value != null && !value.isProhibited();
}
} }

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@ -83,8 +83,14 @@ public class FmlParser extends ParserBase {
if (!result.hasChild("status")) { if (!result.hasChild("status")) {
result.makeElement("status").setValue("draft"); result.makeElement("status").setValue("draft");
} }
if (!result.hasChild("id") && result.hasChild("name")) {
String id = Utilities.makeId(result.getChildValue("name"));
if (!Utilities.noString(id)) {
result.makeElement("id").setValue(id);
}
}
if (!result.hasChild("description") && result.hasChild("title")) { if (!result.hasChild("description") && result.hasChild("title")) {
result.makeElement("description").setValue(result.getChildValue("title")); result.makeElement("description").setValue(Utilities.makeId(result.getChildValue("title")));
} }
while (lexer.hasToken("conceptmap")) while (lexer.hasToken("conceptmap"))

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@ -1234,8 +1234,11 @@ public class StructureDefinition extends CanonicalResource {
// added from java-adornments.txt: // added from java-adornments.txt:
public ElementDefinition getElementByPath(String path) { public ElementDefinition getElementByPath(String path) {
if (path == null) {
return null;
}
for (ElementDefinition ed : getElement()) { for (ElementDefinition ed : getElement()) {
if (path.equals(ed.getPath())) { if (path.equals(ed.getPath()) || (path+"[x]").equals(ed.getPath())) {
return ed; return ed;
} }
} }

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@ -10,6 +10,7 @@ import java.util.Map;
import java.util.Set; import java.util.Set;
import org.hl7.fhir.exceptions.FHIRException; import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.r5.model.CodeSystem;
import org.hl7.fhir.r5.model.CodeType; import org.hl7.fhir.r5.model.CodeType;
import org.hl7.fhir.r5.model.ConceptMap; import org.hl7.fhir.r5.model.ConceptMap;
import org.hl7.fhir.r5.model.Enumeration; import org.hl7.fhir.r5.model.Enumeration;
@ -155,7 +156,12 @@ public class StructureMapRenderer extends TerminologyRenderer {
x.b().tx(" prefix "); x.b().tx(" prefix ");
x.tx(""+prefix); x.tx(""+prefix);
x.color(COLOR_SYNTAX).tx(" = \""); x.color(COLOR_SYNTAX).tx(" = \"");
x.tx(cg.getSource()); CodeSystem cs = context.getContext().fetchResource(CodeSystem.class, cg.getSource());
if (cs != null && cs.hasUserData("path")) {
x.ah(cs.getUserString("path"), cs.present()).tx(cg.getSource());
} else {
x.tx(cg.getSource());
}
x.color(COLOR_SYNTAX).tx("\"\r\n"); x.color(COLOR_SYNTAX).tx("\"\r\n");
prefix++; prefix++;
} }
@ -164,7 +170,12 @@ public class StructureMapRenderer extends TerminologyRenderer {
x.b().tx(" prefix "); x.b().tx(" prefix ");
x.tx(""+prefix); x.tx(""+prefix);
x.color(COLOR_SYNTAX).tx(" = \""); x.color(COLOR_SYNTAX).tx(" = \"");
x.tx(""+cg.getTarget()); CodeSystem cs = context.getContext().fetchResource(CodeSystem.class, cg.getTarget());
if (cs != null && cs.hasUserData("path")) {
x.ah(cs.getUserString("path"), cs.present()).tx(cg.getTarget());
} else {
x.tx(""+cg.getTarget());
}
x.color(COLOR_SYNTAX).tx("\"\r\n"); x.color(COLOR_SYNTAX).tx("\"\r\n");
prefix++; prefix++;
} }
@ -247,7 +258,12 @@ public class StructureMapRenderer extends TerminologyRenderer {
for (StructureMapStructureComponent s : map.getStructure()) { for (StructureMapStructureComponent s : map.getStructure()) {
x.b().tx("uses"); x.b().tx("uses");
x.color(COLOR_SYNTAX).tx(" \""); x.color(COLOR_SYNTAX).tx(" \"");
x.tx(s.getUrl()); StructureDefinition sd = context.getContext().fetchResource(StructureDefinition.class, s.getUrl());
if (sd != null && sd.hasUserData("path")) {
x.ah(sd.getUserString("path"), sd.present()).tx(s.getUrl());
} else {
x.tx(s.getUrl());
}
x.color(COLOR_SYNTAX).tx("\" "); x.color(COLOR_SYNTAX).tx("\" ");
if (s.hasAlias()) { if (s.hasAlias()) {
x.b().tx("alias "); x.b().tx("alias ");
@ -267,7 +283,12 @@ public class StructureMapRenderer extends TerminologyRenderer {
for (UriType s : map.getImport()) { for (UriType s : map.getImport()) {
x.b().tx("imports"); x.b().tx("imports");
x.color(COLOR_SYNTAX).tx(" \""); x.color(COLOR_SYNTAX).tx(" \"");
x.tx(s.getValue()); StructureMap m = context.getContext().fetchResource(StructureMap.class, s.getValue());
if (m != null) {
x.ah(m.getUserString("path"), m.present()).tx(s.getValue());
} else {
x.tx(s.getValue());
}
x.color(COLOR_SYNTAX).tx("\"\r\n"); x.color(COLOR_SYNTAX).tx("\"\r\n");
} }
if (map.hasImport()) if (map.hasImport())

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@ -5027,10 +5027,11 @@ public class FHIRPathEngine {
if (s != null) { if (s != null) {
Base res = null; Base res = null;
if (s.startsWith("#")) { if (s.startsWith("#")) {
String t = s.substring(1);
Property p = context.rootResource.getChildByName("contained"); Property p = context.rootResource.getChildByName("contained");
if (p != null) { if (p != null) {
for (Base c : p.getValues()) { for (Base c : p.getValues()) {
if (chompHash(s).equals(chompHash(c.getIdBase()))) { if (t.equals(c.getIdBase())) {
res = c; res = c;
break; break;
} }
@ -5052,17 +5053,6 @@ public class FHIRPathEngine {
return result; return result;
} }
/**
* Strips a leading hashmark (#) if present at the start of a string
*/
private String chompHash(String theId) {
String retVal = theId;
while (retVal.startsWith("#")) {
retVal = retVal.substring(1);
}
return retVal;
}
private List<Base> funcExtension(ExecutionContext context, List<Base> focus, ExpressionNode exp) throws FHIRException { private List<Base> funcExtension(ExecutionContext context, List<Base> focus, ExpressionNode exp) throws FHIRException {
List<Base> result = new ArrayList<Base>(); List<Base> result = new ArrayList<Base>();
List<Base> nl = execute(context, focus, exp.getParameters().get(0), true); List<Base> nl = execute(context, focus, exp.getParameters().get(0), true);

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@ -664,6 +664,19 @@ public class StructureMapUtilities {
} }
} }
} }
if (!result.hasId() && result.hasName()) {
String id = Utilities.makeId(result.getName());
if (Utilities.noString(id)) {
result.setId(id);
}
}
if (!result.hasStatus()) {
result.setStatus(PublicationStatus.DRAFT);
}
if (!result.hasDescription() && result.hasTitle()) {
result.setDescription(result.getTitle());
}
while (lexer.hasToken("conceptmap")) while (lexer.hasToken("conceptmap"))
parseConceptMap(result, lexer); parseConceptMap(result, lexer);

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@ -130,8 +130,8 @@ Reference_REF_NotFound_Bundle = Bundled or contained reference not found within
Reference_REF_ResourceType = Matching reference for reference {0} has resourceType {1} Reference_REF_ResourceType = Matching reference for reference {0} has resourceType {1}
Reference_REF_WrongTarget = The type ''{0}'' is not a valid Target for this element (must be one of {1}) Reference_REF_WrongTarget = The type ''{0}'' is not a valid Target for this element (must be one of {1})
REFERENCE_REF_WRONGTARGET_LOAD = The type ''{2}'' is not a valid Target for the element {0} (must be {1}) REFERENCE_REF_WRONGTARGET_LOAD = The type ''{2}'' is not a valid Target for the element {0} (must be {1})
Resource_RES_ID_Malformed_Length = Invalid Resource id: Too long Resource_RES_ID_Malformed_Length = Invalid Resource id: Too long ({0} chars)
Resource_RES_ID_Malformed_Chars = Invalid Resource id: Invalid Characters Resource_RES_ID_Malformed_Chars = Invalid Resource id: Invalid Characters (''{0}'')
Resource_RES_ID_Missing = Resource requires an id, but none is present Resource_RES_ID_Missing = Resource requires an id, but none is present
Resource_RES_ID_Prohibited = Resource has an id, but none is allowed Resource_RES_ID_Prohibited = Resource has an id, but none is allowed
Terminology_PassThrough_TX_Message = {0} for ''{1}#{2}'' Terminology_PassThrough_TX_Message = {0} for ''{1}#{2}''

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@ -6222,9 +6222,9 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
if (eid.getProperty() != null && eid.getProperty().getDefinition() != null && eid.getProperty().getDefinition().getBase().getPath().equals("Resource.id")) { if (eid.getProperty() != null && eid.getProperty().getDefinition() != null && eid.getProperty().getDefinition().getBase().getPath().equals("Resource.id")) {
NodeStack ns = stack.push(eid, -1, eid.getProperty().getDefinition(), null); NodeStack ns = stack.push(eid, -1, eid.getProperty().getDefinition(), null);
if (eid.primitiveValue() != null && eid.primitiveValue().length() > 64) { if (eid.primitiveValue() != null && eid.primitiveValue().length() > 64) {
ok = rule(errors, NO_RULE_DATE, IssueType.INVALID, eid.line(), eid.col(), ns.getLiteralPath(), false, I18nConstants.RESOURCE_RES_ID_MALFORMED_LENGTH) && ok; ok = rule(errors, NO_RULE_DATE, IssueType.INVALID, eid.line(), eid.col(), ns.getLiteralPath(), false, I18nConstants.RESOURCE_RES_ID_MALFORMED_LENGTH, eid.primitiveValue().length()) && ok;
} else { } else {
ok = rule(errors, NO_RULE_DATE, IssueType.INVALID, eid.line(), eid.col(), ns.getLiteralPath(), FormatUtilities.isValidId(eid.primitiveValue()), I18nConstants.RESOURCE_RES_ID_MALFORMED_CHARS) && ok; ok = rule(errors, NO_RULE_DATE, IssueType.INVALID, eid.line(), eid.col(), ns.getLiteralPath(), FormatUtilities.isValidId(eid.primitiveValue()), I18nConstants.RESOURCE_RES_ID_MALFORMED_CHARS, eid.primitiveValue()) && ok;
} }
} }
} }

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@ -19,7 +19,7 @@
<properties> <properties>
<hapi_fhir_version>6.2.1</hapi_fhir_version> <hapi_fhir_version>6.2.1</hapi_fhir_version>
<validator_test_case_version>1.2.19</validator_test_case_version> <validator_test_case_version>1.2.20-SNAPSHOT</validator_test_case_version>
<junit_jupiter_version>5.7.1</junit_jupiter_version> <junit_jupiter_version>5.7.1</junit_jupiter_version>
<junit_platform_launcher_version>1.8.2</junit_platform_launcher_version> <junit_platform_launcher_version>1.8.2</junit_platform_launcher_version>
<maven_surefire_version>3.0.0-M5</maven_surefire_version> <maven_surefire_version>3.0.0-M5</maven_surefire_version>