fix NPE in validator & rendering fixes: concept map display + name rendering issue for Med Resources + fix locale date issue
This commit is contained in:
Grahame Grieve
parent
8706b3c4a4
commit
0bb4628f6b
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@ -132,11 +132,25 @@ public class ConceptMapRenderer extends TerminologyRenderer {
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tr.td().b().tx("Destination Code");
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if (comment)
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tr.td().b().tx("Comment");
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tr = tbl.tr();
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XhtmlNode td = tr.td().colspan(comment ? "4" : "3");
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td.tx("Mapping from ");
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if (grp.hasSource()) {
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renderCanonical(cm, td, grp.getSource());
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} else {
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td.code("unspecified code system");
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}
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td.tx(" to ");
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if (grp.hasTarget()) {
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renderCanonical(cm, td, grp.getTarget());
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} else {
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td.code("unspecified code system");
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}
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for (SourceElementComponent ccl : grp.getElement()) {
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tr = tbl.tr();
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XhtmlNode td = tr.td();
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td = tr.td();
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td.addText(ccl.getCode());
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display = getDisplayForConcept(systemFromCanonical(grp.getSource()), versionFromCanonical(grp.getSource()), ccl.getCode());
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display = ccl.hasDisplay() ? ccl.getDisplay() : getDisplayForConcept(systemFromCanonical(grp.getSource()), versionFromCanonical(grp.getSource()), ccl.getCode());
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if (display != null && !isSameCodeAndDisplay(ccl.getCode(), display))
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td.tx(" ("+display+")");
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TargetElementComponent ccm = ccl.getTarget().get(0);
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@ -152,7 +166,7 @@ public class ConceptMapRenderer extends TerminologyRenderer {
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}
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td = tr.td();
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td.addText(ccm.getCode());
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display = getDisplayForConcept(systemFromCanonical(grp.getTarget()), versionFromCanonical(grp.getTarget()), ccm.getCode());
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display = ccm.hasDisplay() ? ccm.getDisplay() : getDisplayForConcept(systemFromCanonical(grp.getTarget()), versionFromCanonical(grp.getTarget()), ccm.getCode());
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if (display != null && !isSameCodeAndDisplay(ccm.getCode(), display))
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td.tx(" ("+display+")");
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if (comment)
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@ -158,9 +158,8 @@ public abstract class ResourceRenderer extends DataRenderer {
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if (target.hasUserData("path")) {
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x.ah(target.getUserString("path")).tx(cr.present());
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} else {
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url = url.substring(0, url.indexOf("|"));
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x.code().tx(url);
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x.tx(": "+cr.present());
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x.tx(" ("+cr.present()+")");
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}
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}
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}
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@ -173,7 +173,8 @@ public class ElementWrappers {
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s = s + " " + family.getValues().get(0).primitiveValue().toUpperCase();
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return s;
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} else {
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throw new Error("Now what? ("+b.fhirType()+")");
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// well, we couldn't get a name from that
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return null;
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}
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}
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return null;
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@ -31,10 +31,13 @@ package org.hl7.fhir.r5.utils;
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import java.util.List;
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import java.util.Locale;
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import java.util.Map;
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import org.hl7.fhir.r5.model.Bundle;
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import org.hl7.fhir.r5.model.Bundle.BundleEntryComponent;
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import org.hl7.fhir.r5.model.Bundle.BundleLinkComponent;
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import org.hl7.fhir.r5.model.CanonicalResource;
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import org.hl7.fhir.r5.model.CodeableConcept;
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import org.hl7.fhir.r5.model.Coding;
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import org.hl7.fhir.r5.model.ContactPoint;
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@ -61,6 +64,7 @@ import org.hl7.fhir.utilities.xhtml.XhtmlComposer;
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public class ResourceUtilities {
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public final static String FHIR_LANGUAGE = "urn:ietf:bcp:47";
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private static JurisdictionLocales jl = new JurisdictionLocales();
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public static boolean isAnError(OperationOutcome error) {
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for (OperationOutcomeIssueComponent t : error.getIssue())
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@ -120,275 +124,37 @@ public class ResourceUtilities {
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resource.setMeta(new Meta());
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return resource.getMeta();
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}
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// public static String representDataElementCollection(IWorkerContext context, Bundle bundle, boolean profileLink, String linkBase) {
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// StringBuilder b = new StringBuilder();
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// DataElement common = showDECHeader(b, bundle);
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// b.append("<table class=\"grid\">\r\n");
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// List<String> cols = chooseColumns(bundle, common, b, profileLink);
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// for (BundleEntryComponent e : bundle.getEntry()) {
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// DataElement de = (DataElement) e.getResource();
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// renderDE(de, cols, b, profileLink, linkBase);
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// }
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// b.append("</table>\r\n");
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// return b.toString();
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// }
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//
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//
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// private static void renderDE(DataElement de, List<String> cols, StringBuilder b, boolean profileLink, String linkBase) {
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// b.append("<tr>");
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// for (String col : cols) {
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// String v;
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// ElementDefinition dee = de.getElement().get(0);
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// if (col.equals("DataElement.name")) {
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// v = de.hasName() ? Utilities.escapeXml(de.getName()) : "";
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// } else if (col.equals("DataElement.status")) {
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// v = de.hasStatusElement() ? de.getStatusElement().asStringValue() : "";
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// } else if (col.equals("DataElement.code")) {
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// v = renderCoding(dee.getCode());
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// } else if (col.equals("DataElement.type")) {
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// v = dee.hasType() ? Utilities.escapeXml(dee.getType().get(0).getCode()) : "";
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// } else if (col.equals("DataElement.units")) {
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// v = renderDEUnits(ToolingExtensions.getAllowedUnits(dee));
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// } else if (col.equals("DataElement.binding")) {
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// v = renderBinding(dee.getBinding());
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// } else if (col.equals("DataElement.minValue")) {
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// v = ToolingExtensions.hasExtension(de, "http://hl7.org/fhir/StructureDefinition/minValue") ? Utilities.escapeXml(ToolingExtensions.readPrimitiveExtension(de, "http://hl7.org/fhir/StructureDefinition/minValue").asStringValue()) : "";
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// } else if (col.equals("DataElement.maxValue")) {
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// v = ToolingExtensions.hasExtension(de, "http://hl7.org/fhir/StructureDefinition/maxValue") ? Utilities.escapeXml(ToolingExtensions.readPrimitiveExtension(de, "http://hl7.org/fhir/StructureDefinition/maxValue").asStringValue()) : "";
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// } else if (col.equals("DataElement.maxLength")) {
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// v = ToolingExtensions.hasExtension(de, "http://hl7.org/fhir/StructureDefinition/maxLength") ? Utilities.escapeXml(ToolingExtensions.readPrimitiveExtension(de, "http://hl7.org/fhir/StructureDefinition/maxLength").asStringValue()) : "";
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// } else if (col.equals("DataElement.mask")) {
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// v = ToolingExtensions.hasExtension(de, "http://hl7.org/fhir/StructureDefinition/mask") ? Utilities.escapeXml(ToolingExtensions.readPrimitiveExtension(de, "http://hl7.org/fhir/StructureDefinition/mask").asStringValue()) : "";
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// } else
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// throw new Error("Unknown column name: "+col);
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//
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// b.append("<td>"+v+"</td>");
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// }
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// if (profileLink) {
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// b.append("<td><a href=\""+linkBase+"-"+de.getId()+".html\">Profile</a>, <a href=\"http://www.opencem.org/#/20140917/Intermountain/"+de.getId()+"\">CEM</a>");
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// if (ToolingExtensions.hasExtension(de, ToolingExtensions.EXT_CIMI_REFERENCE))
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// b.append(", <a href=\""+ToolingExtensions.readStringExtension(de, ToolingExtensions.EXT_CIMI_REFERENCE)+"\">CIMI</a>");
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// b.append("</td>");
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// }
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// b.append("</tr>\r\n");
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// }
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private static String renderBinding(ElementDefinitionBindingComponent binding) {
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// TODO Auto-generated method stub
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public static Locale getLocale(CanonicalResource cr) {
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return getLocale(cr.getLanguage(), cr.getJurisdiction());
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}
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public static Locale getLocale(String lang, List<CodeableConcept> jurisdictions) {
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if (lang != null && lang.contains("-")) {
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return new Locale(lang);
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}
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for (CodeableConcept cc : jurisdictions) {
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Locale locale = getLocale(lang, cc);
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if (locale != null) {
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return locale;
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}
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}
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return null;
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}
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private static String renderDEUnits(DataType units) {
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if (units == null || units.isEmpty())
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return "";
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if (units instanceof CodeableConcept)
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return renderCodeable((CodeableConcept) units);
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else
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return "<a href=\""+Utilities.escapeXml(((Reference) units).getReference())+"\">"+Utilities.escapeXml(((Reference) units).getReference())+"</a>";
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}
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private static String renderCodeable(CodeableConcept units) {
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if (units == null || units.isEmpty())
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return "";
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String v = renderCoding(units.getCoding());
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if (units.hasText())
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v = v + " " +Utilities.escapeXml(units.getText());
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return v;
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}
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private static String renderCoding(List<Coding> codes) {
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CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
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for (Coding c : codes)
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b.append(renderCoding(c));
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return b.toString();
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}
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private static String renderCoding(Coding code) {
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if (code == null || code.isEmpty())
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return "";
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else
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return "<span title=\""+Utilities.escapeXml(code.getSystem())+"\">"+Utilities.escapeXml(code.getCode())+"</span>";
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}
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// private static List<String> chooseColumns(Bundle bundle, DataElement common, StringBuilder b, boolean profileLink) {
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// b.append("<tr>");
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// List<String> results = new ArrayList<String>();
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// results.add("DataElement.name");
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// b.append("<td width=\"250\"><b>Name</b></td>");
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// if (!common.hasStatus()) {
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// results.add("DataElement.status");
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// b.append("<td><b>Status</b></td>");
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// }
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// if (hasCode(bundle)) {
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// results.add("DataElement.code");
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// b.append("<td><b>Code</b></td>");
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// }
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// if (!common.getElement().get(0).hasType() && hasType(bundle)) {
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// results.add("DataElement.type");
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// b.append("<td><b>Type</b></td>");
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// }
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// if (hasUnits(bundle)) {
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// results.add("DataElement.units");
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// b.append("<td><b>Units</b></td>");
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// }
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// if (hasBinding(bundle)) {
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// results.add("DataElement.binding");
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// b.append("<td><b>Binding</b></td>");
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// }
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// if (hasExtension(bundle, "http://hl7.org/fhir/StructureDefinition/minValue")) {
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// results.add("DataElement.minValue");
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// b.append("<td><b>Min Value</b></td>");
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// }
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// if (hasExtension(bundle, "http://hl7.org/fhir/StructureDefinition/maxValue")) {
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// results.add("DataElement.maxValue");
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// b.append("<td><b>Max Value</b></td>");
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// }
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// if (hasExtension(bundle, "http://hl7.org/fhir/StructureDefinition/maxLength")) {
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// results.add("DataElement.maxLength");
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// b.append("<td><b>Max Length</b></td>");
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// }
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// if (hasExtension(bundle, "http://hl7.org/fhir/StructureDefinition/mask")) {
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// results.add("DataElement.mask");
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// b.append("<td><b>Mask</b></td>");
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// }
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// if (profileLink)
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// b.append("<td><b>Links</b></td>");
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// b.append("</tr>\r\n");
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// return results;
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// }
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//
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// private static boolean hasExtension(Bundle bundle, String url) {
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// for (BundleEntryComponent e : bundle.getEntry()) {
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// DataElement de = (DataElement) e.getResource();
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// if (ToolingExtensions.hasExtension(de, url))
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// return true;
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// }
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// return false;
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// }
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//
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// private static boolean hasBinding(Bundle bundle) {
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// for (BundleEntryComponent e : bundle.getEntry()) {
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// DataElement de = (DataElement) e.getResource();
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// if (de.getElement().get(0).hasBinding())
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// return true;
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// }
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// return false;
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// }
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//
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// private static boolean hasCode(Bundle bundle) {
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// for (BundleEntryComponent e : bundle.getEntry()) {
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// DataElement de = (DataElement) e.getResource();
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// if (de.getElement().get(0).hasCode())
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// return true;
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// }
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// return false;
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// }
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//
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// private static boolean hasType(Bundle bundle) {
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// for (BundleEntryComponent e : bundle.getEntry()) {
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// DataElement de = (DataElement) e.getResource();
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// if (de.getElement().get(0).hasType())
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// return true;
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// }
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// return false;
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// }
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//
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// private static boolean hasUnits(Bundle bundle) {
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// for (BundleEntryComponent e : bundle.getEntry()) {
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// DataElement de = (DataElement) e.getResource();
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// if (ToolingExtensions.getAllowedUnits(de.getElement().get(0)) != null)
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// return true;
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// }
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// return false;
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// }
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//
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// private static DataElement showDECHeader(StringBuilder b, Bundle bundle) {
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// DataElement meta = new DataElement();
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// DataElement prototype = (DataElement) bundle.getEntry().get(0).getResource();
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// meta.setPublisher(prototype.getPublisher());
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// meta.getContact().addAll(prototype.getContact());
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// meta.setStatus(prototype.getStatus());
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// meta.setDate(prototype.getDate());
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// meta.addElement().getType().addAll(prototype.getElement().get(0).getType());
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//
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// for (BundleEntryComponent e : bundle.getEntry()) {
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// DataElement de = (DataElement) e.getResource();
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// if (!Base.compareDeep(de.getPublisherElement(), meta.getPublisherElement(), false))
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// meta.setPublisherElement(null);
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// if (!Base.compareDeep(de.getContact(), meta.getContact(), false))
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// meta.getContact().clear();
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// if (!Base.compareDeep(de.getStatusElement(), meta.getStatusElement(), false))
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// meta.setStatusElement(null);
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// if (!Base.compareDeep(de.getDateElement(), meta.getDateElement(), false))
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// meta.setDateElement(null);
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// if (!Base.compareDeep(de.getElement().get(0).getType(), meta.getElement().get(0).getType(), false))
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// meta.getElement().get(0).getType().clear();
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// }
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// if (meta.hasPublisher() || meta.hasContact() || meta.hasStatus() || meta.hasDate() /* || meta.hasType() */) {
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// b.append("<table class=\"grid\">\r\n");
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// if (meta.hasPublisher())
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// b.append("<tr><td>Publisher:</td><td>"+meta.getPublisher()+"</td></tr>\r\n");
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// if (meta.hasContact()) {
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// b.append("<tr><td>Contacts:</td><td>");
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// boolean firsti = true;
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// for (ContactDetail c : meta.getContact()) {
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// if (firsti)
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// firsti = false;
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// else
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// b.append("<br/>");
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// if (c.hasName())
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// b.append(Utilities.escapeXml(c.getName())+": ");
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// boolean first = true;
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// for (ContactPoint cp : c.getTelecom()) {
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// if (first)
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// first = false;
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// else
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// b.append(", ");
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// renderContactPoint(b, cp);
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// }
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// }
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// b.append("</td></tr>\r\n");
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// }
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// if (meta.hasStatus())
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// b.append("<tr><td>Status:</td><td>"+meta.getStatus().toString()+"</td></tr>\r\n");
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// if (meta.hasDate())
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// b.append("<tr><td>Date:</td><td>"+meta.getDateElement().asStringValue()+"</td></tr>\r\n");
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// if (meta.getElement().get(0).hasType())
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// b.append("<tr><td>Type:</td><td>"+renderType(meta.getElement().get(0).getType())+"</td></tr>\r\n");
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// b.append("</table>\r\n");
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// }
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// return meta;
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// }
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private static String renderType(List<TypeRefComponent> type) {
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if (type == null || type.isEmpty())
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return "";
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CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
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for (TypeRefComponent c : type)
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b.append(renderType(c));
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return b.toString();
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}
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private static String renderType(TypeRefComponent type) {
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if (type == null || type.isEmpty())
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return "";
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return type.getWorkingCode();
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}
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public static void renderContactPoint(StringBuilder b, ContactPoint cp) {
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if (cp != null && !cp.isEmpty()) {
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if (cp.getSystem() == ContactPointSystem.EMAIL)
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b.append("<a href=\"mailto:"+cp.getValue()+"\">"+cp.getValue()+"</a>");
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else if (cp.getSystem() == ContactPointSystem.FAX)
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b.append("Fax: "+cp.getValue());
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else if (cp.getSystem() == ContactPointSystem.OTHER)
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b.append("<a href=\""+cp.getValue()+"\">"+cp.getValue()+"</a>");
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else
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b.append(cp.getValue());
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private static Locale getLocale(String lang, CodeableConcept cc) {
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if (cc.hasCoding("http://unstats.un.org/unsd/methods/m49/m49.htm", "001")) {
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return new Locale("en-US");
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}
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}
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String c = cc.getCode("urn:iso:std:iso:3166:-2");
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String l = jl.get(c);
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if (l == null) {
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return null;
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} else if (lang != null) {
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return new Locale(lang+"-"+l.substring(l.indexOf("-")+1));
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} else {
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return new Locale(l);
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}
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}
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}
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@ -4656,7 +4656,7 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
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timeTracker.sd(t);
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trackUsage(profile, hostContext, element);
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if (rule(errors, IssueType.INVALID, element.line(), element.col(), stack.getLiteralPath(),
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profile != null, I18nConstants.BUNDLE_BUNDLE_ENTRY_NOPROFILE_TYPE, special.toHuman(), resourceName)) {
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profile != null, I18nConstants.BUNDLE_BUNDLE_ENTRY_NOPROFILE_TYPE, special == null ? "??" : special.toHuman(), resourceName)) {
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validateResource(hc, errors, resource, element, profile, idstatus, stack);
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}
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} else {
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