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Validate Profile on type in profile - must be for the right type

This commit is contained in:
Grahame Grieve 2020-10-14 13:21:50 +11:00
parent 96e44048ce
commit 1569532a1c
51 changed files with 337 additions and 233 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

7
org.hl7.fhir.utilities/src/main/java/org/hl7/fhir/utilities/i18n/I18nConstants.java
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@ -1,5 +1,7 @@
package org.hl7.fhir.utilities.i18n;
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
public class I18nConstants {
@ -343,6 +345,9 @@ public class I18nConstants {
public static final String SD_MUST_HAVE_DERIVATION = "SD_MUST_HAVE_DERIVATION";
public static final String SD_NESTED_MUST_SUPPORT_DIFF = "SD_NESTED_MUST_SUPPORT_DIFF";
public static final String SD_NESTED_MUST_SUPPORT_SNAPSHOT = "SD_NESTED_MUST_SUPPORT_SNAPSHOT";
public static final String SD_ED_TYPE_PROFILE_UNKNOWN = "SD_ED_TYPE_PROFILE_UNKNOWN";
public static final String SD_ED_TYPE_PROFILE_NOTYPE = "SD_ED_TYPE_PROFILE_NOTYPE";
public static final String SD_ED_TYPE_PROFILE_WRONG = "SD_ED_TYPE_PROFILE_WRONG";
public static final String SEARCHPARAMETER_BASE_WRONG = "SEARCHPARAMETER_BASE_WRONG";
public static final String SEARCHPARAMETER_EXP_WRONG = "SEARCHPARAMETER_EXP_WRONG";
public static final String SEARCHPARAMETER_NOTFOUND = "SEARCHPARAMETER_NOTFOUND";
@ -410,6 +415,8 @@ public class I18nConstants {
public static final String TERMINOLOGY_TX_SYSTEM_VALUESET2 = "Terminology_TX_System_ValueSet2";
public static final String TERMINOLOGY_TX_VALUESET_NOTFOUND = "Terminology_TX_ValueSet_NotFound";
public static final String TERMINOLOGY_TX_VALUESET_NOTFOUND2 = "Terminology_TX_ValueSet_NotFound2";
public static final String TERMINOLOGY_TX_NOSVC_BOUND_REQ = "TERMINOLOGY_TX_NOSVC_BOUND_REQ";
public static final String TERMINOLOGY_TX_NOSVC_BOUND_EXT = "TERMINOLOGY_TX_NOSVC_BOUND_EXT";
public static final String TEXT_SHOULD_NOT_BE_PRESENT = "Text_should_not_be_present";
public static final String THE_BASE_SNAPSHOT_MARKS_A_SLICING_AS_CLOSED_BUT_THE_DIFFERENTIAL_TRIES_TO_EXTEND_IT_IN__AT__ = "The_base_snapshot_marks_a_slicing_as_closed_but_the_differential_tries_to_extend_it_in__at__";
public static final String THIS_BASE_PROPERTY_MUST_BE_AN_ARRAY_NOT_A_ = "This_base_property_must_be_an_Array_not_a_";

7
org.hl7.fhir.utilities/src/main/resources/Messages.properties
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@ -612,4 +612,9 @@ UNSUPPORTED_IDENTIFIER_PATTERN_NO_PROPERTY_NOT_SUPPORTED_FOR_DISCRIMINATOR_FOR_S
SD_NESTED_MUST_SUPPORT_DIFF = The element {0} has types/profiles/targets that are marked as must support, but the element itself is not marked as must-support. The inner must-supports will be ignored unless the element inherits must-support = true
SD_NESTED_MUST_SUPPORT_SNAPSHOT = The element {0} has types/profiles/targets that are marked as must support, but the element itself is not marked as must-support
Unable_to_connect_to_terminology_server = Unable to connect to terminology server. Error = {0}
SD_ED_TYPE_PROFILE_UNKNOWN = Unable to resolve profile {0}
SD_ED_TYPE_PROFILE_NOTYPE = Found profile {0}, but unable to determine the type it applies it
SD_ED_TYPE_PROFILE_WRONG = Profile {0} is for type {1}, but this element has type {2}
TERMINOLOGY_TX_NOSVC_BOUND_REQ = Could not confirm that the codes provided are from the required value set {0} because there is no terminology service
TERMINOLOGY_TX_NOSVC_BOUND_EXT = Could not confirm that the codes provided are from the extensible value set {0} because there is no terminology service

5
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/BaseValidator.java
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@ -2,11 +2,7 @@ package org.hl7.fhir.validation;
import static org.apache.commons.lang3.StringUtils.isBlank;
import java.text.DateFormat;
import java.text.ParseException;
import java.text.SimpleDateFormat;
import java.util.ArrayList;
import java.util.Date;
import java.util.HashMap;
/*
@ -85,7 +81,6 @@ import org.hl7.fhir.utilities.validation.ValidationMessage;
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueSeverity;
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
import org.hl7.fhir.validation.BaseValidator.ValidationControl;
import org.hl7.fhir.validation.instance.utils.IndexedElement;
public class BaseValidator {

6
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/NativeHostServices.java
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@ -34,7 +34,11 @@ package org.hl7.fhir.validation;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import org.hl7.fhir.convertors.*;
import org.hl7.fhir.convertors.VersionConvertorAdvisor50;
import org.hl7.fhir.convertors.VersionConvertor_10_50;
import org.hl7.fhir.convertors.VersionConvertor_14_50;
import org.hl7.fhir.convertors.VersionConvertor_30_50;
import org.hl7.fhir.convertors.VersionConvertor_40_50;
import org.hl7.fhir.exceptions.FHIRException;
/**

96
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/ValidationEngine.java
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@ -1,7 +1,46 @@
package org.hl7.fhir.validation;
import java.io.BufferedOutputStream;
import java.io.ByteArrayInputStream;
import java.io.ByteArrayOutputStream;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.FilenameFilter;
import java.io.IOException;
import java.io.InputStream;
import java.io.OutputStream;
import java.io.PrintWriter;
import java.net.HttpURLConnection;
import java.net.URISyntaxException;
import java.net.URL;
import java.net.URLConnection;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collections;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.Map.Entry;
import java.util.Set;
import java.util.UUID;
import java.util.zip.ZipEntry;
import java.util.zip.ZipInputStream;
import org.apache.commons.io.IOUtils;
import org.hl7.fhir.convertors.*;
import org.hl7.fhir.convertors.VersionConvertorAdvisor50;
import org.hl7.fhir.convertors.VersionConvertor_10_30;
import org.hl7.fhir.convertors.VersionConvertor_10_40;
import org.hl7.fhir.convertors.VersionConvertor_10_50;
import org.hl7.fhir.convertors.VersionConvertor_14_30;
import org.hl7.fhir.convertors.VersionConvertor_14_40;
import org.hl7.fhir.convertors.VersionConvertor_14_50;
import org.hl7.fhir.convertors.VersionConvertor_30_40;
import org.hl7.fhir.convertors.VersionConvertor_30_50;
import org.hl7.fhir.convertors.VersionConvertor_40_50;
import org.hl7.fhir.convertors.loaders.BaseLoaderR5.NullLoaderKnowledgeProvider;
import org.hl7.fhir.convertors.loaders.R2016MayToR5Loader;
import org.hl7.fhir.convertors.loaders.R2ToR5Loader;
@ -23,50 +62,57 @@ import org.hl7.fhir.r5.formats.FormatUtilities;
import org.hl7.fhir.r5.formats.IParser.OutputStyle;
import org.hl7.fhir.r5.formats.JsonParser;
import org.hl7.fhir.r5.formats.XmlParser;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.model.Base;
import org.hl7.fhir.r5.model.Bundle;
import org.hl7.fhir.r5.model.Coding;
import org.hl7.fhir.r5.model.Constants;
import org.hl7.fhir.r5.model.DomainResource;
import org.hl7.fhir.r5.model.FhirPublication;
import org.hl7.fhir.r5.model.ImplementationGuide;
import org.hl7.fhir.r5.model.ImplementationGuide.ImplementationGuideGlobalComponent;
import org.hl7.fhir.r5.model.OperationOutcome;
import org.hl7.fhir.r5.model.OperationOutcome.OperationOutcomeIssueComponent;
import org.hl7.fhir.r5.model.Parameters;
import org.hl7.fhir.r5.model.Reference;
import org.hl7.fhir.r5.model.Resource;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.hl7.fhir.r5.model.StructureMap;
import org.hl7.fhir.r5.renderers.RendererFactory;
import org.hl7.fhir.r5.renderers.utils.RenderingContext;
import org.hl7.fhir.r5.renderers.utils.RenderingContext.ResourceRendererMode;
import org.hl7.fhir.r5.terminologies.ConceptMapEngine;
import org.hl7.fhir.r5.utils.*;
import org.hl7.fhir.r5.utils.IResourceValidator.*;
import org.hl7.fhir.r5.utils.EOperationOutcome;
import org.hl7.fhir.r5.utils.FHIRPathEngine;
import org.hl7.fhir.r5.utils.IResourceValidator.BestPracticeWarningLevel;
import org.hl7.fhir.r5.utils.IResourceValidator.BundleValidationRule;
import org.hl7.fhir.r5.utils.IResourceValidator.CheckDisplayOption;
import org.hl7.fhir.r5.utils.IResourceValidator.IValidatorResourceFetcher;
import org.hl7.fhir.r5.utils.IResourceValidator.IdStatus;
import org.hl7.fhir.r5.utils.IResourceValidator.ReferenceValidationPolicy;
import org.hl7.fhir.r5.utils.OperationOutcomeUtilities;
import org.hl7.fhir.r5.utils.StructureMapUtilities;
import org.hl7.fhir.r5.utils.StructureMapUtilities.ITransformerServices;
import org.hl7.fhir.utilities.i18n.I18nConstants;
import org.hl7.fhir.utilities.npm.BasePackageCacheManager;
import org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager;
import org.hl7.fhir.utilities.npm.NpmPackage;
import org.hl7.fhir.utilities.npm.PackageClient;
import org.hl7.fhir.utilities.npm.ToolsVersion;
import org.hl7.fhir.validation.BaseValidator.ValidationControl;
import org.hl7.fhir.validation.Validator.QuestionnaireMode;
import org.hl7.fhir.validation.cli.services.StandAloneValidatorFetcher.IPackageInstaller;
import org.hl7.fhir.validation.instance.InstanceValidator;
import org.hl7.fhir.r5.utils.ToolingExtensions;
import org.hl7.fhir.utilities.IniFile;
import org.hl7.fhir.utilities.TextFile;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.VersionUtilities;
import org.hl7.fhir.utilities.i18n.I18nBase;
import org.hl7.fhir.utilities.i18n.I18nConstants;
import org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager;
import org.hl7.fhir.utilities.npm.NpmPackage;
import org.hl7.fhir.utilities.npm.ToolsVersion;
import org.hl7.fhir.utilities.validation.ValidationMessage;
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueSeverity;
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
import org.hl7.fhir.utilities.xhtml.XhtmlComposer;
import org.hl7.fhir.validation.BaseValidator.ValidationControl;
import org.hl7.fhir.validation.Validator.QuestionnaireMode;
import org.hl7.fhir.validation.cli.services.StandAloneValidatorFetcher.IPackageInstaller;
import org.hl7.fhir.validation.instance.InstanceValidator;
import org.xml.sax.SAXException;
import java.io.*;
import java.net.HttpURLConnection;
import java.net.URISyntaxException;
import java.net.URL;
import java.net.URLConnection;
import java.util.*;
import java.util.Map.Entry;
import java.util.zip.ZipEntry;
import java.util.zip.ZipInputStream;
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.

6
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/Validator.java
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@ -68,10 +68,12 @@ import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.VersionUtilities;
import org.hl7.fhir.validation.ValidationEngine.VersionSourceInformation;
import org.hl7.fhir.validation.cli.ValidatorGui;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ComparisonService;
import org.hl7.fhir.validation.cli.services.ValidationService;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.utils.*;
import org.hl7.fhir.validation.cli.utils.Common;
import org.hl7.fhir.validation.cli.utils.Display;
import org.hl7.fhir.validation.cli.utils.Params;
/**
* A executable class that will validate one or more FHIR resources against

9
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/VersionUtil.java
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@ -1,5 +1,8 @@
package org.hl7.fhir.validation;
import static org.apache.commons.lang3.StringUtils.defaultIfBlank;
import static org.apache.commons.lang3.StringUtils.left;
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.
@ -31,19 +34,13 @@ package org.hl7.fhir.validation;
import java.io.InputStream;
import java.text.SimpleDateFormat;
import java.time.Duration;
import java.time.Instant;
import java.time.OffsetDateTime;
import java.util.Date;
import java.util.Properties;
import org.hl7.fhir.r5.model.InstantType;
import org.hl7.fhir.utilities.Utilities;
import static org.apache.commons.lang3.StringUtils.defaultIfBlank;
import static org.apache.commons.lang3.StringUtils.left;
/**
* Used internally by HAPI to log the version of the HAPI FHIR framework
* once, when the framework is first loaded by the classloader.

5
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/RestEndpoints.java
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@ -1,12 +1,13 @@
package org.hl7.fhir.validation.cli;
import io.javalin.Javalin;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.controller.CliContextController;
import org.hl7.fhir.validation.cli.controller.ValidationController;
import org.hl7.fhir.validation.cli.controller.UIController;
import org.hl7.fhir.validation.cli.controller.ValidationController;
import org.hl7.fhir.validation.cli.model.CliContext;
import io.javalin.Javalin;
public class RestEndpoints {
public UIController myUIController;

9
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/ValidatorGui.java
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@ -1,15 +1,14 @@
package org.hl7.fhir.validation.cli;
import io.javalin.Javalin;
import java.awt.Desktop;
import java.net.URI;
import org.hl7.fhir.utilities.VersionUtilities;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.utils.Common;
import java.awt.*;
import java.io.IOException;
import java.net.URI;
import java.net.URISyntaxException;
import io.javalin.Javalin;
public class ValidatorGui {

8
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/controller/CliContextController.java
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@ -1,12 +1,14 @@
package org.hl7.fhir.validation.cli.controller;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import io.javalin.http.Context;
import org.apache.http.HttpStatus;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.jetbrains.annotations.NotNull;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import io.javalin.http.Context;
public class CliContextController {
private final String JSON_MIME_TYPE = "application/json";

7
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/controller/ValidationController.java
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@ -1,14 +1,15 @@
package org.hl7.fhir.validation.cli.controller;
import com.fasterxml.jackson.databind.ObjectMapper;
import io.javalin.http.Context;
import io.javalin.http.Handler;
import org.apache.http.HttpStatus;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.model.ValidationRequest;
import org.hl7.fhir.validation.cli.model.ValidationResponse;
import org.hl7.fhir.validation.cli.services.ValidationService;
import com.fasterxml.jackson.databind.ObjectMapper;
import io.javalin.http.Context;
public class ValidationController {
private ValidationEngine myValidationEngine;

9
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/model/CliContext.java
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@ -1,11 +1,16 @@
package org.hl7.fhir.validation.cli.model;
import com.fasterxml.jackson.annotation.JsonProperty;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.Objects;
import org.hl7.fhir.r5.utils.IResourceValidator.BundleValidationRule;
import org.hl7.fhir.validation.Validator;
import java.util.*;
import com.fasterxml.jackson.annotation.JsonProperty;
/**
* A POJO for storing the flags/values for the CLI validator.

1
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/model/FileInfo.java
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@ -1,7 +1,6 @@
package org.hl7.fhir.validation.cli.model;
import com.fasterxml.jackson.annotation.JsonProperty;
import org.hl7.fhir.r5.elementmodel.Manager;
public class FileInfo {

7
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/model/ValidationOutcome.java
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@ -1,11 +1,12 @@
package org.hl7.fhir.validation.cli.model;
import com.fasterxml.jackson.annotation.JsonProperty;
import org.hl7.fhir.utilities.validation.ValidationMessage;
import java.util.ArrayList;
import java.util.List;
import org.hl7.fhir.utilities.validation.ValidationMessage;
import com.fasterxml.jackson.annotation.JsonProperty;
public class ValidationOutcome {
@JsonProperty("fileInfo")

4
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/model/ValidationRequest.java
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@ -1,10 +1,10 @@
package org.hl7.fhir.validation.cli.model;
import com.fasterxml.jackson.annotation.JsonProperty;
import java.util.ArrayList;
import java.util.List;
import com.fasterxml.jackson.annotation.JsonProperty;
public class ValidationRequest {
@JsonProperty("cliContext")

4
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/model/ValidationResponse.java
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@ -1,10 +1,10 @@
package org.hl7.fhir.validation.cli.model;
import com.fasterxml.jackson.annotation.JsonProperty;
import java.util.ArrayList;
import java.util.List;
import com.fasterxml.jackson.annotation.JsonProperty;
public class ValidationResponse {
@JsonProperty("outcomes")

16
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/services/ComparisonService.java
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@ -1,27 +1,19 @@
package org.hl7.fhir.validation.cli.services;
import java.awt.Desktop;
import java.io.File;
import java.io.IOException;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.r5.conformance.CapabilityStatementUtilities;
import org.hl7.fhir.r5.formats.IParser;
import org.hl7.fhir.r5.formats.JsonParser;
import org.hl7.fhir.r5.formats.XmlParser;
import org.hl7.fhir.r5.model.CanonicalResource;
import org.hl7.fhir.r5.model.CapabilityStatement;
import org.hl7.fhir.r5.model.Resource;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.hl7.fhir.r5.utils.EOperationOutcome;
import org.hl7.fhir.utilities.TextFile;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.validation.ValidationMessage;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.utils.Params;
import java.awt.*;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.util.UUID;
public class ComparisonService {
public static void doLeftRightComparison(String[] args, String dest, ValidationEngine validator) throws IOException, FHIRException, EOperationOutcome {

1
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/services/StandAloneValidatorFetcher.java
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@ -17,7 +17,6 @@ import org.hl7.fhir.utilities.VersionUtilities.VersionURLInfo;
import org.hl7.fhir.utilities.npm.BasePackageCacheManager;
import org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager;
import org.hl7.fhir.utilities.npm.NpmPackage;
import org.hl7.fhir.validation.cli.services.StandAloneValidatorFetcher.IPackageInstaller;
public class StandAloneValidatorFetcher implements IValidatorResourceFetcher {

28
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/services/ValidationService.java
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@ -1,11 +1,24 @@
package org.hl7.fhir.validation.cli.services;
import java.io.File;
import java.io.FileOutputStream;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import org.hl7.fhir.r5.context.TerminologyCache;
import org.hl7.fhir.r5.elementmodel.Manager;
import org.hl7.fhir.r5.formats.IParser;
import org.hl7.fhir.r5.formats.JsonParser;
import org.hl7.fhir.r5.formats.XmlParser;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.model.Bundle;
import org.hl7.fhir.r5.model.DomainResource;
import org.hl7.fhir.r5.model.FhirPublication;
import org.hl7.fhir.r5.model.ImplementationGuide;
import org.hl7.fhir.r5.model.OperationOutcome;
import org.hl7.fhir.r5.model.Resource;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.hl7.fhir.r5.model.StructureDefinition.StructureDefinitionKind;
import org.hl7.fhir.r5.utils.ToolingExtensions;
import org.hl7.fhir.utilities.TextFile;
@ -14,14 +27,11 @@ import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.validation.ValidationMessage;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.ValidationEngine.VersionSourceInformation;
import org.hl7.fhir.validation.cli.model.*;
import java.io.File;
import java.io.FileOutputStream;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.model.FileInfo;
import org.hl7.fhir.validation.cli.model.ValidationOutcome;
import org.hl7.fhir.validation.cli.model.ValidationRequest;
import org.hl7.fhir.validation.cli.model.ValidationResponse;
public class ValidationService {

4
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/utils/Display.java
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@ -1,12 +1,12 @@
package org.hl7.fhir.validation.cli.utils;
import java.io.IOException;
import org.hl7.fhir.r5.model.Constants;
import org.hl7.fhir.utilities.VersionUtilities;
import org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager;
import org.hl7.fhir.utilities.npm.ToolsVersion;
import java.io.IOException;
/**
* Class for displaying output to the cli user.
*

8
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/utils/Params.java
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@ -1,14 +1,14 @@
package org.hl7.fhir.validation.cli.utils;
import java.io.File;
import java.util.Arrays;
import java.util.Locale;
import org.hl7.fhir.r5.utils.IResourceValidator.BundleValidationRule;
import org.hl7.fhir.utilities.VersionUtilities;
import org.hl7.fhir.validation.Validator;
import org.hl7.fhir.validation.cli.model.CliContext;
import java.io.File;
import java.util.Arrays;
import java.util.Locale;
public class Params {
public static final String GUI = "-gui";

25
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/EnableWhenEvaluator.java
View File

@ -27,17 +27,26 @@ package org.hl7.fhir.validation.instance;
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
import java.util.*;
import java.util.stream.*;
*/
import java.util.ArrayList;
import java.util.List;
import java.util.stream.Collectors;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.r5.elementmodel.Element;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.model.MeasureReport.MeasureReportGroupComponent;
import org.hl7.fhir.r5.model.Questionnaire.*;
import org.hl7.fhir.r5.model.BooleanType;
import org.hl7.fhir.r5.model.Coding;
import org.hl7.fhir.r5.model.DataType;
import org.hl7.fhir.r5.model.Expression;
import org.hl7.fhir.r5.model.ExpressionNode;
import org.hl7.fhir.r5.model.Factory;
import org.hl7.fhir.r5.model.PrimitiveType;
import org.hl7.fhir.r5.model.Quantity;
import org.hl7.fhir.r5.model.Questionnaire;
import org.hl7.fhir.r5.model.Questionnaire.EnableWhenBehavior;
import org.hl7.fhir.r5.model.Questionnaire.QuestionnaireItemComponent;
import org.hl7.fhir.r5.model.Questionnaire.QuestionnaireItemEnableWhenComponent;
import org.hl7.fhir.r5.model.Questionnaire.QuestionnaireItemOperator;
import org.hl7.fhir.r5.utils.FHIRPathEngine;
import org.hl7.fhir.validation.instance.utils.ValidatorHostContext;

3
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/SpecialExtensions.java
View File

@ -1,12 +1,9 @@
package org.hl7.fhir.validation.instance;
import java.io.IOException;
import java.io.InputStream;
import org.hl7.fhir.convertors.VersionConvertorConstants;
import org.hl7.fhir.exceptions.FHIRFormatError;
import org.hl7.fhir.r5.formats.JsonParser;
import org.hl7.fhir.r5.formats.XmlParser;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.hl7.fhir.utilities.Utilities;

5
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/type/MeasureContext.java
View File

@ -1,19 +1,14 @@
package org.hl7.fhir.validation.instance.type;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import javax.xml.parsers.ParserConfigurationException;
import org.hl7.fhir.r5.elementmodel.Element;
import org.hl7.fhir.r5.model.Attachment;
import org.hl7.fhir.r5.model.Coding;
import org.hl7.fhir.r5.model.Library;
import org.hl7.fhir.r5.model.Measure;
import org.hl7.fhir.r5.model.Measure.MeasureGroupComponent;
import org.hl7.fhir.utilities.xml.XMLUtil;
import org.xml.sax.SAXException;
public class MeasureContext {

11
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/type/MeasureValidator.java
View File

@ -5,7 +5,6 @@ import static org.apache.commons.lang3.StringUtils.isNotBlank;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.math.BigDecimal;
import java.math.BigInteger;
import java.util.ArrayList;
import java.util.List;
@ -22,27 +21,23 @@ import org.hl7.fhir.r5.model.Coding;
import org.hl7.fhir.r5.model.FhirPublication;
import org.hl7.fhir.r5.model.Library;
import org.hl7.fhir.r5.model.Measure;
import org.hl7.fhir.r5.model.Resource;
import org.hl7.fhir.r5.renderers.DataRenderer;
import org.hl7.fhir.r5.renderers.utils.RenderingContext;
import org.hl7.fhir.r5.renderers.utils.RenderingContext.ResourceRendererMode;
import org.hl7.fhir.r5.model.Measure.MeasureGroupComponent;
import org.hl7.fhir.r5.model.Measure.MeasureGroupPopulationComponent;
import org.hl7.fhir.r5.model.Measure.MeasureGroupStratifierComponent;
import org.hl7.fhir.r5.model.Resource;
import org.hl7.fhir.r5.renderers.DataRenderer;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.i18n.I18nConstants;
import org.hl7.fhir.utilities.validation.ValidationMessage;
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
import org.hl7.fhir.utilities.xml.XMLUtil;
import org.hl7.fhir.validation.instance.utils.NodeStack;
import org.hl7.fhir.validation.BaseValidator;
import org.hl7.fhir.validation.TimeTracker;
import org.hl7.fhir.validation.instance.utils.NodeStack;
import org.hl7.fhir.validation.instance.utils.ValidatorHostContext;
import org.w3c.dom.Document;
import net.sf.saxon.tree.tiny.LargeStringBuffer;
public class MeasureValidator extends BaseValidator {
public MeasureValidator(IWorkerContext context, TimeTracker timeTracker) {

11
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/type/QuestionnaireValidator.java
View File

@ -23,26 +23,25 @@ import org.hl7.fhir.r5.elementmodel.ObjectConverter;
import org.hl7.fhir.r5.formats.IParser.OutputStyle;
import org.hl7.fhir.r5.model.Coding;
import org.hl7.fhir.r5.model.DateType;
import org.hl7.fhir.r5.model.Enumerations.FHIRVersion;
import org.hl7.fhir.r5.model.FhirPublication;
import org.hl7.fhir.r5.model.IntegerType;
import org.hl7.fhir.r5.model.Questionnaire;
import org.hl7.fhir.r5.model.Questionnaire.QuestionnaireItemAnswerOptionComponent;
import org.hl7.fhir.r5.model.Questionnaire.QuestionnaireItemComponent;
import org.hl7.fhir.r5.model.Questionnaire.QuestionnaireItemType;
import org.hl7.fhir.r5.model.Resource;
import org.hl7.fhir.r5.model.StringType;
import org.hl7.fhir.r5.model.TimeType;
import org.hl7.fhir.r5.model.ValueSet;
import org.hl7.fhir.r5.model.ElementDefinition.TypeRefComponent;
import org.hl7.fhir.r5.model.Enumerations.FHIRVersion;
import org.hl7.fhir.r5.model.Questionnaire.QuestionnaireItemAnswerOptionComponent;
import org.hl7.fhir.r5.model.Questionnaire.QuestionnaireItemComponent;
import org.hl7.fhir.r5.model.Questionnaire.QuestionnaireItemType;
import org.hl7.fhir.r5.utils.FHIRPathEngine;
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.i18n.I18nConstants;
import org.hl7.fhir.utilities.validation.ValidationMessage;
import org.hl7.fhir.utilities.validation.ValidationOptions;
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
import org.hl7.fhir.utilities.validation.ValidationOptions;
import org.hl7.fhir.validation.BaseValidator;
import org.hl7.fhir.validation.TimeTracker;
import org.hl7.fhir.validation.Validator.QuestionnaireMode;

3
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/type/SearchParameterValidator.java
View File

@ -5,14 +5,12 @@ import java.util.Collections;
import java.util.Comparator;
import java.util.List;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.elementmodel.Element;
import org.hl7.fhir.r5.model.ExpressionNode;
import org.hl7.fhir.r5.model.ExpressionNode.Kind;
import org.hl7.fhir.r5.model.ExpressionNode.Operation;
import org.hl7.fhir.r5.model.SearchParameter;
import org.hl7.fhir.r5.model.ValueSet;
import org.hl7.fhir.r5.utils.FHIRPathEngine;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.i18n.I18nConstants;
@ -21,7 +19,6 @@ import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
import org.hl7.fhir.validation.BaseValidator;
import org.hl7.fhir.validation.TimeTracker;
import org.hl7.fhir.validation.instance.type.SearchParameterValidator.FhirPathSorter;
import org.hl7.fhir.validation.instance.utils.NodeStack;
public class SearchParameterValidator extends BaseValidator {

79
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/type/StructureDefinitionValidator.java
View File

@ -3,18 +3,15 @@ package org.hl7.fhir.validation.instance.type;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Collections;
import java.util.Comparator;
import java.util.List;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.hl7.fhir.convertors.VersionConvertor_10_50;
import org.hl7.fhir.convertors.VersionConvertor_14_50;
import org.hl7.fhir.convertors.VersionConvertor_30_50;
import org.hl7.fhir.convertors.VersionConvertor_40_50;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.r5.conformance.ProfileUtilities;
import org.hl7.fhir.r5.conformance.ProfileUtilities.ProfileKnowledgeProvider;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.elementmodel.Element;
import org.hl7.fhir.r5.elementmodel.Manager;
@ -22,14 +19,10 @@ import org.hl7.fhir.r5.elementmodel.Manager.FhirFormat;
import org.hl7.fhir.r5.formats.IParser.OutputStyle;
import org.hl7.fhir.r5.model.ElementDefinition;
import org.hl7.fhir.r5.model.ExpressionNode;
import org.hl7.fhir.r5.model.ExpressionNode.Kind;
import org.hl7.fhir.r5.model.ExpressionNode.Operation;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.hl7.fhir.r5.model.StructureDefinition.TypeDerivationRule;
import org.hl7.fhir.r5.model.SearchParameter;
import org.hl7.fhir.r5.model.ValueSet;
import org.hl7.fhir.r5.utils.FHIRPathEngine;
import org.hl7.fhir.r5.utils.ToolingExtensions;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.VersionUtilities;
import org.hl7.fhir.utilities.i18n.I18nConstants;
import org.hl7.fhir.utilities.validation.ValidationMessage;
@ -37,7 +30,6 @@ import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
import org.hl7.fhir.validation.BaseValidator;
import org.hl7.fhir.validation.TimeTracker;
import org.hl7.fhir.validation.instance.type.StructureDefinitionValidator.FhirPathSorter;
import org.hl7.fhir.validation.instance.utils.NodeStack;
public class StructureDefinitionValidator extends BaseValidator {
@ -52,16 +44,18 @@ public class StructureDefinitionValidator extends BaseValidator {
}
private FHIRPathEngine fpe;
private boolean wantCheckSnapshotUnchanged;
public StructureDefinitionValidator(IWorkerContext context, TimeTracker timeTracker, FHIRPathEngine fpe) {
public StructureDefinitionValidator(IWorkerContext context, TimeTracker timeTracker, FHIRPathEngine fpe, boolean wantCheckSnapshotUnchanged) {
super(context);
source = Source.InstanceValidator;
this.fpe = fpe;
this.timeTracker = timeTracker;
this.wantCheckSnapshotUnchanged = wantCheckSnapshotUnchanged;
}
public void validateStructureDefinition(List<ValidationMessage> errors, Element src, NodeStack stack) {
StructureDefinition sd;
StructureDefinition sd = null;
try {
sd = loadAsSD(src);
List<ElementDefinition> snapshot = sd.getSnapshot().getElement();
@ -85,7 +79,7 @@ public class StructureDefinitionValidator extends BaseValidator {
errors.add(msg);
}
}
if (!snapshot.isEmpty()) {
if (!snapshot.isEmpty() && wantCheckSnapshotUnchanged) {
int was = snapshot.size();
int is = sd.getSnapshot().getElement().size();
rule(errors, IssueType.NOTFOUND, stack.getLiteralPath(), was == is, I18nConstants.SNAPSHOT_EXISTING_PROBLEM, was, is);
@ -99,29 +93,33 @@ public class StructureDefinitionValidator extends BaseValidator {
List<Element> differentials = src.getChildrenByName("differential");
List<Element> snapshots = src.getChildrenByName("snapshot");
for (Element differential : differentials) {
validateElementList(errors, differential, stack.push(differential, -1, null, null), false, snapshots.size() > 0);
validateElementList(errors, differential, stack.push(differential, -1, null, null), false, snapshots.size() > 0, sd);
}
for (Element snapshot : snapshots) {
validateElementList(errors, snapshot, stack.push(snapshot, -1, null, null), true, true);
validateElementList(errors, snapshot, stack.push(snapshot, -1, null, null), true, true, sd);
}
}
private void validateElementList(List<ValidationMessage> errors, Element elementList, NodeStack stack, boolean snapshot, boolean hasSnapshot) {
private void validateElementList(List<ValidationMessage> errors, Element elementList, NodeStack stack, boolean snapshot, boolean hasSnapshot, StructureDefinition sd) {
List<Element> elements = elementList.getChildrenByName("element");
int cc = 0;
for (Element element : elements) {
validateElementDefinition(errors, element, stack.push(element, cc, null, null), snapshot, hasSnapshot);
validateElementDefinition(errors, element, stack.push(element, cc, null, null), snapshot, hasSnapshot, sd);
cc++;
}
}
private void validateElementDefinition(List<ValidationMessage> errors, Element element, NodeStack stack, boolean snapshot, boolean hasSnapshot) {
private void validateElementDefinition(List<ValidationMessage> errors, Element element, NodeStack stack, boolean snapshot, boolean hasSnapshot, StructureDefinition sd) {
boolean typeMustSupport = false;
List<Element> types = element.getChildrenByName("type");
for (Element type : types) {
if (hasMustSupportExtension(type)) {
typeMustSupport = true;
}
// check the stated profile - must be a constraint on the type
if (snapshot || sd != null) {
validateElementType(errors, type, stack.push(type, -1, null, null), sd, element.getChildValue("path"));
}
}
if (typeMustSupport) {
if (snapshot) {
@ -132,6 +130,53 @@ public class StructureDefinitionValidator extends BaseValidator {
}
}
private void validateElementType(List<ValidationMessage> errors, Element type, NodeStack stack, StructureDefinition sd, String path) {
String code = type.getNamedChildValue("code");
if (code == null && path != null) {
code = getTypeCodeFromSD(sd, path);
}
if (code != null) {
List<Element> profiles = type.getChildrenByName("profile");
for (Element profile : profiles) {
validateTypeProfile(errors, profile, code, stack.push(type, -1, null, null));
}
}
}
private String getTypeCodeFromSD(StructureDefinition sd, String path) {
ElementDefinition ed = null;
for (ElementDefinition t : sd.getSnapshot().getElement()) {
if (t.hasPath() && t.getPath().equals(path)) {
if (ed == null) {
ed = t;
} else {
return null; // more than one match, we don't know which is which
}
}
}
return ed != null && ed.getType().size() == 1 ? ed.getTypeFirstRep().getCode() : null;
}
private void validateTypeProfile(List<ValidationMessage> errors, Element profile, String code, NodeStack stack) {
String p = profile.primitiveValue();
StructureDefinition sd = context.fetchResource(StructureDefinition.class, p);
if (warning(errors, IssueType.EXCEPTION, stack.getLiteralPath(), sd != null, I18nConstants.SD_ED_TYPE_PROFILE_UNKNOWN, p)) {
String t = determineBaseType(sd);
if (t == null) {
rule(errors, IssueType.EXCEPTION, stack.getLiteralPath(), code.equals(t), I18nConstants.SD_ED_TYPE_PROFILE_NOTYPE, p);
} else {
rule(errors, IssueType.EXCEPTION, stack.getLiteralPath(), code.equals(t), I18nConstants.SD_ED_TYPE_PROFILE_WRONG, p, t, code);
}
}
}
private String determineBaseType(StructureDefinition sd) {
while (sd != null && !sd.hasType() && sd.getDerivation() == TypeDerivationRule.CONSTRAINT) {
sd = context.fetchResource(StructureDefinition.class, sd.getBaseDefinition());
}
return sd == null ? null : sd.getType();
}
private boolean hasMustSupportExtension(Element type) {
if ("true".equals(getExtensionValue(type, ToolingExtensions.EXT_MUST_SUPPORT))) {
return true;

4
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/type/ValueSetValidator.java
View File

@ -3,14 +3,13 @@ package org.hl7.fhir.validation.instance.type;
import java.util.ArrayList;
import java.util.List;
import org.hl7.fhir.r5.model.ValueSet;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.context.IWorkerContext.CodingValidationRequest;
import org.hl7.fhir.r5.context.IWorkerContext.ValidationResult;
import org.hl7.fhir.r5.elementmodel.Element;
import org.hl7.fhir.r5.model.CodeSystem;
import org.hl7.fhir.r5.model.Coding;
import org.hl7.fhir.r5.model.Resource;
import org.hl7.fhir.r5.model.ValueSet;
import org.hl7.fhir.r5.terminologies.ValueSetExpander.TerminologyServiceErrorClass;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.VersionUtilities;
@ -22,7 +21,6 @@ import org.hl7.fhir.utilities.validation.ValidationOptions;
import org.hl7.fhir.validation.BaseValidator;
import org.hl7.fhir.validation.TimeTracker;
import org.hl7.fhir.validation.instance.InstanceValidator;
import org.hl7.fhir.validation.instance.type.ValueSetValidator.VSCodingValidationRequest;
import org.hl7.fhir.validation.instance.utils.NodeStack;
public class ValueSetValidator extends BaseValidator {

2
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/utils/ChildIterator.java
View File

@ -1,8 +1,8 @@
package org.hl7.fhir.validation.instance.utils;
import org.hl7.fhir.r5.elementmodel.Element;
import org.hl7.fhir.validation.instance.InstanceValidator;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.validation.instance.InstanceValidator;
public class ChildIterator {
private final InstanceValidator instanceValidator;

4
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/utils/ElementInfo.java
View File

@ -1,11 +1,11 @@
package org.hl7.fhir.validation.instance.utils;
import java.util.List;
import org.hl7.fhir.r5.elementmodel.Element;
import org.hl7.fhir.r5.model.ElementDefinition;
import org.hl7.fhir.utilities.validation.ValidationMessage;
import java.util.List;
public class ElementInfo {
public List<ValidationMessage> sliceInfo;

4
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/utils/EntrySummary.java
View File

@ -1,10 +1,10 @@
package org.hl7.fhir.validation.instance.utils;
import org.hl7.fhir.r5.elementmodel.Element;
import java.util.ArrayList;
import java.util.List;
import org.hl7.fhir.r5.elementmodel.Element;
public class EntrySummary {
Element entry;

2
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/utils/NodeStack.java
View File

@ -2,10 +2,8 @@ package org.hl7.fhir.validation.instance.utils;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.elementmodel.Element;

1
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/utils/ResolvedReference.java
View File

@ -2,7 +2,6 @@ package org.hl7.fhir.validation.instance.utils;
import org.hl7.fhir.r5.elementmodel.Element;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.hl7.fhir.validation.instance.InstanceValidator;
public class ResolvedReference {

6
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/utils/ResourceValidationTracker.java
View File

@ -1,13 +1,13 @@
package org.hl7.fhir.validation.instance.utils;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.hl7.fhir.utilities.validation.ValidationMessage;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.hl7.fhir.utilities.validation.ValidationMessage;
/**
* The validator keeps one of these classes for each resource it validates (e.g. when chasing references)
* <p>

10
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/utils/ValidatorHostContext.java
View File

@ -1,15 +1,13 @@
package org.hl7.fhir.validation.instance.utils;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import org.hl7.fhir.r5.elementmodel.Element;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.hl7.fhir.utilities.validation.ValidationMessage;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Stack;
public class ValidatorHostContext {
private Object appContext;

2
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/packages/PackageValidator.java
View File

@ -10,8 +10,8 @@ import org.hl7.fhir.utilities.VersionUtilities;
import org.hl7.fhir.utilities.npm.CachingPackageClient;
import org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager;
import org.hl7.fhir.utilities.npm.NpmPackage;
import org.hl7.fhir.utilities.npm.ToolsVersion;
import org.hl7.fhir.utilities.npm.PackageClient.PackageInfo;
import org.hl7.fhir.utilities.npm.ToolsVersion;
public class PackageValidator {

33
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/comparison/tests/ComparisonTests.java
View File

@ -1,15 +1,25 @@
package org.hl7.fhir.comparison.tests;
import com.google.common.base.Charsets;
import com.google.gson.JsonElement;
import com.google.gson.JsonObject;
import java.io.File;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.InputStream;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Map.Entry;
import java.util.stream.Stream;
import org.apache.commons.io.IOUtils;
import org.hl7.fhir.convertors.VersionConvertor_10_50;
import org.hl7.fhir.convertors.VersionConvertor_14_50;
import org.hl7.fhir.convertors.VersionConvertor_30_50;
import org.hl7.fhir.convertors.VersionConvertor_40_50;
import org.hl7.fhir.convertors.loaders.R4ToR5Loader;
import org.hl7.fhir.convertors.loaders.BaseLoaderR5.NullLoaderKnowledgeProvider;
import org.hl7.fhir.convertors.loaders.R4ToR5Loader;
import org.hl7.fhir.exceptions.DefinitionException;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.exceptions.FHIRFormatError;
@ -49,18 +59,9 @@ import org.junit.jupiter.params.ParameterizedTest;
import org.junit.jupiter.params.provider.Arguments;
import org.junit.jupiter.params.provider.MethodSource;
import java.io.File;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.InputStream;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Map.Entry;
import java.util.stream.Stream;
import com.google.common.base.Charsets;
import com.google.gson.JsonElement;
import com.google.gson.JsonObject;
public class ComparisonTests {

38
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/conversion/tests/R3R4ConversionTests.java
View File

@ -1,6 +1,21 @@
package org.hl7.fhir.conversion.tests;
import com.google.gson.*;
import java.io.ByteArrayInputStream;
import java.io.ByteArrayOutputStream;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileNotFoundException;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.stream.Stream;
import java.util.zip.ZipEntry;
import java.util.zip.ZipInputStream;
import javax.xml.parsers.ParserConfigurationException;
import org.hl7.fhir.convertors.loaders.R3ToR4Loader;
import org.hl7.fhir.exceptions.DefinitionException;
@ -11,8 +26,16 @@ import org.hl7.fhir.r4.context.SimpleWorkerContext;
import org.hl7.fhir.r4.elementmodel.Element;
import org.hl7.fhir.r4.elementmodel.Manager;
import org.hl7.fhir.r4.formats.IParser.OutputStyle;
import org.hl7.fhir.r4.model.*;
import org.hl7.fhir.r4.model.Base;
import org.hl7.fhir.r4.model.Coding;
import org.hl7.fhir.r4.model.MetadataResource;
import org.hl7.fhir.r4.model.PractitionerRole;
import org.hl7.fhir.r4.model.Resource;
import org.hl7.fhir.r4.model.ResourceFactory;
import org.hl7.fhir.r4.model.StructureDefinition;
import org.hl7.fhir.r4.model.StructureDefinition.StructureDefinitionKind;
import org.hl7.fhir.r4.model.StructureMap;
import org.hl7.fhir.r4.model.UriType;
import org.hl7.fhir.r4.test.utils.TestingUtilities;
import org.hl7.fhir.r4.utils.IResourceValidator;
import org.hl7.fhir.r4.utils.IResourceValidator.IValidatorResourceFetcher;
@ -32,12 +55,11 @@ import org.junit.jupiter.params.provider.Arguments;
import org.junit.jupiter.params.provider.MethodSource;
import org.xml.sax.SAXException;
import javax.xml.parsers.ParserConfigurationException;
import java.io.*;
import java.util.*;
import java.util.stream.Stream;
import java.util.zip.ZipEntry;
import java.util.zip.ZipInputStream;
import com.google.gson.Gson;
import com.google.gson.GsonBuilder;
import com.google.gson.JsonArray;
import com.google.gson.JsonObject;
import com.google.gson.JsonPrimitive;
@Disabled
public class R3R4ConversionTests implements ITransformerServices, IValidatorResourceFetcher {

21
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/conversion/tests/SnapShotGenerationXTests.java
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@ -1,5 +1,14 @@
package org.hl7.fhir.conversion.tests;
import java.io.File;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import javax.xml.parsers.ParserConfigurationException;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.NotImplementedException;
import org.hl7.fhir.exceptions.DefinitionException;
@ -18,12 +27,12 @@ import org.hl7.fhir.r5.model.Resource;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.hl7.fhir.r5.model.StructureDefinition.StructureDefinitionKind;
import org.hl7.fhir.r5.model.StructureDefinition.TypeDerivationRule;
import org.hl7.fhir.r5.model.TypeDetails;
import org.hl7.fhir.r5.model.ValueSet;
import org.hl7.fhir.r5.renderers.RendererFactory;
import org.hl7.fhir.r5.renderers.utils.RenderingContext;
import org.hl7.fhir.r5.renderers.utils.RenderingContext.ResourceRendererMode;
import org.hl7.fhir.r5.test.utils.TestingUtilities;
import org.hl7.fhir.r5.model.TypeDetails;
import org.hl7.fhir.r5.model.ValueSet;
import org.hl7.fhir.r5.utils.FHIRPathEngine;
import org.hl7.fhir.r5.utils.FHIRPathEngine.IEvaluationContext;
import org.hl7.fhir.r5.utils.IResourceValidator;
@ -38,14 +47,6 @@ import org.w3c.dom.Document;
import org.w3c.dom.Element;
import org.xml.sax.SAXException;
import javax.xml.parsers.ParserConfigurationException;
import java.io.File;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
public class SnapShotGenerationXTests {
public enum TestFetchMode {

4
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/conversion/tests/UtilitiesXTests.java
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@ -46,14 +46,14 @@ import javax.xml.parsers.DocumentBuilderFactory;
import org.apache.commons.codec.binary.Base64;
import org.apache.commons.io.IOUtils;
import org.fhir.ucum.UcumEssenceService;
import org.hl7.fhir.convertors.loaders.BaseLoaderR5.NullLoaderKnowledgeProvider;
import org.hl7.fhir.convertors.loaders.R2016MayToR5Loader;
import org.hl7.fhir.convertors.loaders.R2ToR5Loader;
import org.hl7.fhir.convertors.loaders.R3ToR5Loader;
import org.hl7.fhir.convertors.loaders.R4ToR5Loader;
import org.hl7.fhir.convertors.loaders.BaseLoaderR5.NullLoaderKnowledgeProvider;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.context.SimpleWorkerContext;
import org.hl7.fhir.r5.context.IWorkerContext.IContextResourceLoader;
import org.hl7.fhir.r5.context.SimpleWorkerContext;
import org.hl7.fhir.r5.model.Parameters;
import org.hl7.fhir.utilities.CSFile;
import org.hl7.fhir.utilities.TextFile;

2
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/r5/test/FHIRMappingLanguageTests.java
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@ -6,7 +6,6 @@ import java.io.ByteArrayOutputStream;
import java.io.FileInputStream;
import java.io.FileNotFoundException;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import java.util.stream.Stream;
@ -24,7 +23,6 @@ import org.hl7.fhir.utilities.TextFile;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.xml.XMLUtil;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.instance.InstanceValidatorFactory;
import org.junit.jupiter.api.BeforeAll;
import org.junit.jupiter.params.ParameterizedTest;

7
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/validation/cli/BaseRestTest.java
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@ -1,14 +1,15 @@
package org.hl7.fhir.validation.cli;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper;
import java.io.IOException;
import org.apache.http.HttpResponse;
import org.apache.http.util.EntityUtils;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.junit.jupiter.api.AfterAll;
import org.junit.jupiter.api.BeforeAll;
import java.io.IOException;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper;
public abstract class BaseRestTest {

18
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/validation/cli/ValidatorGuiTest.java
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@ -1,17 +1,8 @@
package org.hl7.fhir.validation.cli;
import io.github.bonigarcia.wdm.WebDriverManager;
import org.hl7.fhir.r5.elementmodel.Manager;
import org.hl7.fhir.r5.model.FhirPublication;
import org.hl7.fhir.r5.model.OperationOutcome;
import org.hl7.fhir.r5.test.utils.TestingUtilities;
import org.hl7.fhir.r5.utils.EOperationOutcome;
import org.hl7.fhir.validation.ValidationEngine;
import java.io.IOException;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.model.FileInfo;
import org.hl7.fhir.validation.cli.model.ValidationRequest;
import org.hl7.fhir.validation.cli.model.ValidationResponse;
import org.hl7.fhir.validation.cli.services.ValidationService;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.DisplayName;
import org.junit.jupiter.api.Test;
@ -19,10 +10,7 @@ import org.openqa.selenium.WebDriver;
import org.openqa.selenium.chrome.ChromeDriver;
import org.openqa.selenium.chrome.ChromeOptions;
import java.io.IOException;
import java.io.InputStream;
import java.net.URISyntaxException;
import java.util.Arrays;
import io.github.bonigarcia.wdm.WebDriverManager;
class ValidatorGuiTest {

4
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/validation/cli/controller/HttpGetContextTest.java
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@ -1,5 +1,7 @@
package org.hl7.fhir.validation.cli.controller;
import java.io.IOException;
import org.apache.http.HttpResponse;
import org.apache.http.HttpStatus;
import org.apache.http.client.methods.HttpGet;
@ -13,8 +15,6 @@ import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.DisplayName;
import org.junit.jupiter.api.Test;
import java.io.IOException;
class HttpGetContextTest extends BaseRestTest {
private final String GET_CONTEXT_URL = "http://localhost:" + ValidatorGui.getPort() + "/context";

6
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/validation/cli/controller/HttpPutContextTest.java
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@ -1,12 +1,12 @@
package org.hl7.fhir.validation.cli.controller;
import io.javalin.http.Context;
import static org.mockito.Mockito.mock;
import static org.mockito.Mockito.verify;
import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import static org.mockito.Mockito.mock;
import static org.mockito.Mockito.verify;
import io.javalin.http.Context;
class HttpPutContextTest {

6
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/validation/tests/JsonSchemaTests.java
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@ -1,5 +1,8 @@
package org.hl7.fhir.validation.tests;
import java.io.FileNotFoundException;
import java.io.IOException;
import org.everit.json.schema.Schema;
import org.everit.json.schema.ValidationException;
import org.everit.json.schema.loader.SchemaLoader;
@ -9,9 +12,6 @@ import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import java.io.FileNotFoundException;
import java.io.IOException;
public class JsonSchemaTests {

2
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/validation/tests/LoadIgTests.java
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@ -8,8 +8,6 @@ import org.hl7.fhir.utilities.VersionUtilities;
import org.hl7.fhir.validation.ValidationEngine;
import org.junit.Test;
import net.sf.saxon.expr.instruct.Message;
public class LoadIgTests {
@Test

2
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/validation/tests/TransformationTests.java
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@ -3,8 +3,8 @@ package org.hl7.fhir.validation.tests;
import java.io.File;
import org.hl7.fhir.r4.test.utils.TestingUtilities;
import org.hl7.fhir.validation.Validator;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.validation.Validator;
import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;

6
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/validation/tests/ValidationEngineTests.java
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@ -1,5 +1,8 @@
package org.hl7.fhir.validation.tests;
import java.util.ArrayList;
import java.util.List;
import org.hl7.fhir.r5.elementmodel.Manager.FhirFormat;
import org.hl7.fhir.r5.model.FhirPublication;
import org.hl7.fhir.r5.model.OperationOutcome;
@ -11,9 +14,6 @@ import org.hl7.fhir.validation.tests.utilities.TestUtilities;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.Test;
import java.util.ArrayList;
import java.util.List;
public class ValidationEngineTests {
private static final String DEF_TX = "http://tx.fhir.org";

2
pom.xml
View File

@ -19,7 +19,7 @@
<properties>
<hapi_fhir_version>5.1.0</hapi_fhir_version>
<validator_test_case_version>1.1.45</validator_test_case_version>
<validator_test_case_version>1.1.46-SNAPSHOT</validator_test_case_version>
<junit_jupiter_version>5.6.2</junit_jupiter_version>
<maven_surefire_version>3.0.0-M4</maven_surefire_version>
<jacoco_version>0.8.5</jacoco_version>