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org.hl7.fhir.core
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Merge remote-tracking branch 'origin/master'

This commit is contained in:
Grahame Grieve 2023-02-24 06:52:56 +11:00
parent cf2ddda8d7 e9607783da
commit 17eaff9995
15 changed files with 134 additions and 58 deletions
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4
org.hl7.fhir.convertors/pom.xml
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@ -5,7 +5,7 @@
<parent> <parent>
<groupId>ca.uhn.hapi.fhir</groupId> <groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId> <artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.99-SNAPSHOT</version> <version>5.6.100-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath> <relativePath>../pom.xml</relativePath>
</parent> </parent>
@ -87,7 +87,7 @@
<dependency> <dependency>
<groupId>com.squareup.okhttp3</groupId> <groupId>com.squareup.okhttp3</groupId>
<artifactId>okhttp</artifactId> <artifactId>okhttp</artifactId>
<version>4.9.0</version> <version>${okhttp.version}</version>
<optional>true</optional> <optional>true</optional>
</dependency> </dependency>

2
org.hl7.fhir.convertors/src/main/java/org/hl7/fhir/convertors/txClient/TerminologyClientFactory.java
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@ -60,7 +60,7 @@ public class TerminologyClientFactory {
private static String checkEndsWith(String term, String url) { private static String checkEndsWith(String term, String url) {
if (url.endsWith(term)) if (url.endsWith(term))
return url; return url;
if (url.startsWith("http://tx.fhir.org")) if (url.startsWith("http://tx.fhir.org") || url.startsWith("https://tx.fhir.org"))
return Utilities.pathURL(url, term); return Utilities.pathURL(url, term);
if (url.equals("http://local.fhir.org:8080")) if (url.equals("http://local.fhir.org:8080"))
return Utilities.pathURL(url, term); return Utilities.pathURL(url, term);

74
org.hl7.fhir.convertors/src/test/java/org/hl7/fhir/convertors/txClient/TerminologyClientFactoryTest.java Normal file
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@ -0,0 +1,74 @@
package org.hl7.fhir.convertors.txClient;
import org.hl7.fhir.r5.terminologies.TerminologyClient;
import org.hl7.fhir.utilities.FhirPublication;
import org.junit.jupiter.api.Test;
import org.junit.jupiter.params.ParameterizedTest;
import org.junit.jupiter.params.provider.Arguments;
import org.junit.jupiter.params.provider.MethodSource;
import org.xml.sax.SAXException;
import javax.xml.parsers.ParserConfigurationException;
import java.io.IOException;
import java.net.URISyntaxException;
import java.util.ArrayList;
import java.util.List;
import java.util.stream.Stream;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertThrows;
public class TerminologyClientFactoryTest {
public static Stream<Arguments> data() throws ParserConfigurationException, SAXException, IOException {
List<Arguments> objects = new ArrayList<>();
objects.addAll(getDefaultServerArgs("tx.fhir.org/r4", "tx.fhir.org", FhirPublication.R4));
objects.addAll(getHttpAndHttpsArgs("tx.fhir.org", null, "tx.fhir.org/r4"));
objects.addAll(getHttpAndHttpsArgs("tx.fhir.org/r4", null, "tx.fhir.org/r4"));
objects.addAll(getDefaultServerArgs("tx.fhir.org/r2", "tx.fhir.org", FhirPublication.DSTU2));
objects.addAll(getDefaultServerArgs("tx.fhir.org/r3", "tx.fhir.org", FhirPublication.DSTU2016May));
objects.addAll(getDefaultServerArgs("tx.fhir.org/r4", "tx.fhir.org", FhirPublication.R4B));
objects.addAll(getDefaultServerArgs("tx.fhir.org/r4", "tx.fhir.org", FhirPublication.R5));
objects.addAll(getDefaultServerArgs("tx.fhir.org/r3", "tx.fhir.org", FhirPublication.STU3));
objects.addAll(getHttpAndHttpsArgs("someserver.org", FhirPublication.R4, "someserver.org"));
objects.addAll(getHttpAndHttpsArgs("someserver.org", null, "someserver.org"));
return objects.stream();
}
private static List<Arguments> getDefaultServerArgs(String explicitUrl, String baseUrl, FhirPublication fhirPublication) {
List<Arguments> objects = new ArrayList<>();
objects.addAll(getHttpAndHttpsArgs(baseUrl, fhirPublication, explicitUrl));
objects.addAll(getHttpAndHttpsArgs(explicitUrl, fhirPublication, explicitUrl));
return objects;
}
private static List<Arguments> getHttpAndHttpsArgs(String baseUrl, FhirPublication fhirPublication, String baseExpectedAddress) {
return List.of(
Arguments.of("https://" + baseUrl, fhirPublication, "https://" + baseExpectedAddress),
Arguments.of("http://" + baseUrl, fhirPublication, "http://" + baseExpectedAddress)
);
}
@ParameterizedTest
@MethodSource("data")
public void testMakeClient(String url, FhirPublication fhirPublication, String expectedAddress) throws URISyntaxException {
TerminologyClient terminologyClient = TerminologyClientFactory.makeClient(url, "dummyUserAgent", fhirPublication);
assertEquals(expectedAddress, terminologyClient.getAddress());
}
@Test
public void testMakeClientDstu1Fails() throws URISyntaxException {
assertThrows(Error.class, () -> {
TerminologyClient terminologyClient = TerminologyClientFactory.makeClient("urldoesnotmatter", "dummyUserAgent", FhirPublication.DSTU1);
}
);
}
@Test
public void testMakeClientNullFails() throws URISyntaxException {
assertThrows(Error.class, () -> {
TerminologyClient terminologyClient = TerminologyClientFactory.makeClient("urldoesnotmatter", "dummyUserAgent", FhirPublication.NULL);
}
);
}
}

2
org.hl7.fhir.dstu2/pom.xml
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@ -5,7 +5,7 @@
<parent> <parent>
<groupId>ca.uhn.hapi.fhir</groupId> <groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId> <artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.99-SNAPSHOT</version> <version>5.6.100-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath> <relativePath>../pom.xml</relativePath>
</parent> </parent>

2
org.hl7.fhir.dstu2016may/pom.xml
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@ -5,7 +5,7 @@
<parent> <parent>
<groupId>ca.uhn.hapi.fhir</groupId> <groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId> <artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.99-SNAPSHOT</version> <version>5.6.100-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath> <relativePath>../pom.xml</relativePath>
</parent> </parent>

4
org.hl7.fhir.dstu3/pom.xml
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@ -5,7 +5,7 @@
<parent> <parent>
<groupId>ca.uhn.hapi.fhir</groupId> <groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId> <artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.99-SNAPSHOT</version> <version>5.6.100-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath> <relativePath>../pom.xml</relativePath>
</parent> </parent>
@ -55,7 +55,7 @@
<dependency> <dependency>
<groupId>com.squareup.okhttp3</groupId> <groupId>com.squareup.okhttp3</groupId>
<artifactId>okhttp</artifactId> <artifactId>okhttp</artifactId>
<version>4.9.0</version> <version>${okhttp.version}</version>
<optional>true</optional> <optional>true</optional>
</dependency> </dependency>

4
org.hl7.fhir.r4/pom.xml
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@ -5,7 +5,7 @@
<parent> <parent>
<groupId>ca.uhn.hapi.fhir</groupId> <groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId> <artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.99-SNAPSHOT</version> <version>5.6.100-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath> <relativePath>../pom.xml</relativePath>
</parent> </parent>
@ -67,7 +67,7 @@
<dependency> <dependency>
<groupId>com.squareup.okhttp3</groupId> <groupId>com.squareup.okhttp3</groupId>
<artifactId>okhttp</artifactId> <artifactId>okhttp</artifactId>
<version>4.9.0</version> <version>${okhttp.version}</version>
<optional>true</optional> <optional>true</optional>
</dependency> </dependency>
<dependency> <dependency>

8
org.hl7.fhir.r4b/pom.xml
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@ -5,7 +5,7 @@
<parent> <parent>
<groupId>ca.uhn.hapi.fhir</groupId> <groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId> <artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.99-SNAPSHOT</version> <version>5.6.100-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath> <relativePath>../pom.xml</relativePath>
</parent> </parent>
@ -61,19 +61,19 @@
<dependency> <dependency>
<groupId>com.squareup.okhttp3</groupId> <groupId>com.squareup.okhttp3</groupId>
<artifactId>okhttp</artifactId> <artifactId>okhttp</artifactId>
<version>4.9.0</version> <version>${okhttp.version}</version>
<optional>true</optional> <optional>true</optional>
</dependency> </dependency>
<dependency> <dependency>
<groupId>com.squareup.okhttp3</groupId> <groupId>com.squareup.okhttp3</groupId>
<artifactId>logging-interceptor</artifactId> <artifactId>logging-interceptor</artifactId>
<version>4.9.0</version> <version>${okhttp.version}</version>
<optional>true</optional> <optional>true</optional>
</dependency> </dependency>
<dependency> <dependency>
<groupId>com.squareup.okhttp3</groupId> <groupId>com.squareup.okhttp3</groupId>
<artifactId>mockwebserver</artifactId> <artifactId>mockwebserver</artifactId>
<version>4.9.0</version> <version>${okhttp.version}</version>
<optional>true</optional> <optional>true</optional>
<scope>test</scope> <scope>test</scope>
</dependency> </dependency>

58
org.hl7.fhir.r4b/src/main/java/org/hl7/fhir/r4b/model/BaseResource.java
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@ -1,33 +1,33 @@
package org.hl7.fhir.r4b.model; package org.hl7.fhir.r4b.model;
/* /*
Copyright (c) 2011+, HL7, Inc. Copyright (c) 2011+, HL7, Inc.
All rights reserved. All rights reserved.
Redistribution and use in source and binary forms, with or without modification, Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met: are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this * Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer. list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice, * Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution. and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to * Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific endorse or promote products derived from this software without specific
prior written permission. prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE. POSSIBILITY OF SUCH DAMAGE.
*/ */
import org.hl7.fhir.instance.model.api.IAnyResource; import org.hl7.fhir.instance.model.api.IAnyResource;
@ -58,7 +58,7 @@ public abstract class BaseResource extends Base implements IAnyResource, IElemen
@Override @Override
public FhirVersionEnum getStructureFhirVersionEnum() { public FhirVersionEnum getStructureFhirVersionEnum() {
return FhirVersionEnum.R5; // to: change to R5 return FhirVersionEnum.R4B;
} }
@Override @Override

8
org.hl7.fhir.r5/pom.xml
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@ -5,7 +5,7 @@
<parent> <parent>
<groupId>ca.uhn.hapi.fhir</groupId> <groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId> <artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.99-SNAPSHOT</version> <version>5.6.100-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath> <relativePath>../pom.xml</relativePath>
</parent> </parent>
@ -104,13 +104,13 @@
<dependency> <dependency>
<groupId>com.squareup.okhttp3</groupId> <groupId>com.squareup.okhttp3</groupId>
<artifactId>okhttp</artifactId> <artifactId>okhttp</artifactId>
<version>4.9.0</version> <version>${okhttp.version}</version>
<optional>true</optional> <optional>true</optional>
</dependency> </dependency>
<dependency> <dependency>
<groupId>com.squareup.okhttp3</groupId> <groupId>com.squareup.okhttp3</groupId>
<artifactId>logging-interceptor</artifactId> <artifactId>logging-interceptor</artifactId>
<version>4.9.0</version> <version>${okhttp.version}</version>
<optional>true</optional> <optional>true</optional>
</dependency> </dependency>
@ -141,7 +141,7 @@
<dependency> <dependency>
<groupId>com.squareup.okhttp3</groupId> <groupId>com.squareup.okhttp3</groupId>
<artifactId>mockwebserver</artifactId> <artifactId>mockwebserver</artifactId>
<version>4.9.0</version> <version>${okhttp.version}</version>
<optional>true</optional> <optional>true</optional>
<scope>test</scope> <scope>test</scope>
</dependency> </dependency>

2
org.hl7.fhir.report/pom.xml
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@ -5,7 +5,7 @@
<parent> <parent>
<groupId>ca.uhn.hapi.fhir</groupId> <groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId> <artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.99-SNAPSHOT</version> <version>5.6.100-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath> <relativePath>../pom.xml</relativePath>
</parent> </parent>

6
org.hl7.fhir.utilities/pom.xml
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@ -5,7 +5,7 @@
<parent> <parent>
<groupId>ca.uhn.hapi.fhir</groupId> <groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId> <artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.99-SNAPSHOT</version> <version>5.6.100-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath> <relativePath>../pom.xml</relativePath>
</parent> </parent>
@ -45,7 +45,7 @@
<dependency> <dependency>
<groupId>com.squareup.okhttp3</groupId> <groupId>com.squareup.okhttp3</groupId>
<artifactId>okhttp</artifactId> <artifactId>okhttp</artifactId>
<version>4.9.0</version> <version>${okhttp.version}</version>
<optional>true</optional> <optional>true</optional>
</dependency> </dependency>
@ -159,7 +159,7 @@
<dependency> <dependency>
<groupId>com.squareup.okhttp3</groupId> <groupId>com.squareup.okhttp3</groupId>
<artifactId>logging-interceptor</artifactId> <artifactId>logging-interceptor</artifactId>
<version>4.9.0</version> <version>${okhttp.version}</version>
<scope>compile</scope> <scope>compile</scope>
</dependency> </dependency>
--> -->

8
org.hl7.fhir.validation.cli/pom.xml
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@ -5,7 +5,7 @@
<parent> <parent>
<groupId>ca.uhn.hapi.fhir</groupId> <groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId> <artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.99-SNAPSHOT</version> <version>5.6.100-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath> <relativePath>../pom.xml</relativePath>
</parent> </parent>
@ -225,7 +225,7 @@
<dependency> <dependency>
<groupId>com.squareup.okhttp3</groupId> <groupId>com.squareup.okhttp3</groupId>
<artifactId>mockwebserver</artifactId> <artifactId>mockwebserver</artifactId>
<version>4.9.0</version> <version>${okhttp.version}</version>
<optional>false</optional> <optional>false</optional>
<scope>compile</scope> <scope>compile</scope>
</dependency> </dependency>
@ -273,7 +273,7 @@
<dependency> <dependency>
<groupId>com.squareup.okhttp3</groupId> <groupId>com.squareup.okhttp3</groupId>
<artifactId>okhttp</artifactId> <artifactId>okhttp</artifactId>
<version>4.9.0</version> <version>${okhttp.version}</version>
</dependency> </dependency>
<dependency> <dependency>
<groupId>com.atlassian.commonmark</groupId> <groupId>com.atlassian.commonmark</groupId>
@ -310,7 +310,7 @@
<plugin> <plugin>
<groupId>org.apache.maven.plugins</groupId> <groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId> <artifactId>maven-jar-plugin</artifactId>
<version>3.1.2</version> <version>${maven-jar-plugin.version}</version>
<configuration> <configuration>
<archive> <archive>
<manifest> <manifest>

4
org.hl7.fhir.validation/pom.xml
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@ -5,7 +5,7 @@
<parent> <parent>
<groupId>ca.uhn.hapi.fhir</groupId> <groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId> <artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.99-SNAPSHOT</version> <version>5.6.100-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath> <relativePath>../pom.xml</relativePath>
</parent> </parent>
@ -154,7 +154,7 @@
<dependency> <dependency>
<groupId>com.squareup.okhttp3</groupId> <groupId>com.squareup.okhttp3</groupId>
<artifactId>okhttp</artifactId> <artifactId>okhttp</artifactId>
<version>4.9.0</version> <version>${okhttp.version}</version>
<optional>true</optional> <optional>true</optional>
</dependency> </dependency>

6
pom.xml
View File

@ -14,7 +14,7 @@
HAPI FHIR HAPI FHIR
--> -->
<artifactId>org.hl7.fhir.core</artifactId> <artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.99-SNAPSHOT</version> <version>5.6.100-SNAPSHOT</version>
<packaging>pom</packaging> <packaging>pom</packaging>
<properties> <properties>
@ -24,6 +24,7 @@
<junit_platform_launcher_version>1.8.2</junit_platform_launcher_version> <junit_platform_launcher_version>1.8.2</junit_platform_launcher_version>
<maven_surefire_version>3.0.0-M5</maven_surefire_version> <maven_surefire_version>3.0.0-M5</maven_surefire_version>
<maven_clean_version>3.1.0</maven_clean_version> <maven_clean_version>3.1.0</maven_clean_version>
<okhttp.version>4.9.3</okhttp.version>
<jacoco_version>0.8.8</jacoco_version> <jacoco_version>0.8.8</jacoco_version>
<info_cqframework_version>1.5.1</info_cqframework_version> <info_cqframework_version>1.5.1</info_cqframework_version>
<lombok_version>1.18.22</lombok_version> <lombok_version>1.18.22</lombok_version>
@ -36,6 +37,7 @@
<maven.compiler.testRelease>11</maven.compiler.testRelease> <maven.compiler.testRelease>11</maven.compiler.testRelease>
<maven.compiler.testSource>11</maven.compiler.testSource> <maven.compiler.testSource>11</maven.compiler.testSource>
<maven.compiler.testTarget>11</maven.compiler.testTarget> <maven.compiler.testTarget>11</maven.compiler.testTarget>
<maven-jar-plugin.version>3.2.2</maven-jar-plugin.version>
</properties> </properties>
<name>HL7 Core Artifacts</name> <name>HL7 Core Artifacts</name>
@ -228,7 +230,7 @@
<plugin> <plugin>
<groupId>org.apache.maven.plugins</groupId> <groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId> <artifactId>maven-jar-plugin</artifactId>
<version>3.2.0</version> <version>${maven-jar-plugin.version}</version>
<executions> <executions>
<execution> <execution>
<goals> <goals>