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Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core

This commit is contained in:
Grahame Grieve 2021-08-25 07:10:48 +10:00
parent 4ba9193a5e 5ac31d11ac
commit 2308d33b0a
7 changed files with 393 additions and 237 deletions
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9
RELEASE_NOTES.md
View File

@ -1 +1,8 @@
Exposed showMessagesFromReferences on the command line interface to support reporting validation errors on referenced types (particularly useful when validating messages & documents)
* Differential element fields minValue/maxValue are now correctly treated in the snapshot generation process
* Conversion context added to conversions process
* Users can now define custom behavior for CodeSystems, Extensions, BundleEntries, and Types by extending BaseAdvisor.
* Resource Conversions are now thread-safe, each using their own instance of the conversion context that is unique
* ConversionFactory classes are statically accessed, to minimize changes downstream
* I need to add more tests, there were very few to begin with, and it's my next task
* All conversion libraries and no play makes Mark a dull boy
* Exposed showMessagesFromReferences on the command line interface to support reporting validation errors on referenced types (particularly useful when validating messages & documents)

76
org.hl7.fhir.dstu2/src/main/java/org/hl7/fhir/dstu2/utils/ProfileUtilities.java
View File

@ -1,33 +1,33 @@
package org.hl7.fhir.dstu2.utils;
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
import java.io.IOException;
@ -1009,6 +1009,24 @@ public class ProfileUtilities {
else
derived.getMaxLengthElement().setUserData(DERIVATION_EQUALS, true);
}
if (derived.hasMaxValue()) {
if (!Base.compareDeep(derived.getMaxValue(), base.getMaxValue(), false))
base.setMaxValue(derived.getMaxValue().copy());
else if (trimDifferential)
derived.setMaxValue(null);
else
derived.getMaxValue().setUserData(DERIVATION_EQUALS, true);
}
if (derived.hasMinValue()) {
if (!Base.compareDeep(derived.getMinValue(), base.getMinValue(), false))
base.setMinValue(derived.getMinValue().copy());
else if (trimDifferential)
derived.setMinValue(null);
else
derived.getMinValue().setUserData(DERIVATION_EQUALS, true);
}
// todo: what to do about conditions?
// condition : id 0..*
@ -2157,4 +2175,4 @@ public class ProfileUtilities {
//}
}
}

76
org.hl7.fhir.dstu2016may/src/main/java/org/hl7/fhir/dstu2016may/utils/ProfileUtilities.java
View File

@ -1,33 +1,33 @@
package org.hl7.fhir.dstu2016may.utils;
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
import java.io.IOException;
@ -1010,6 +1010,24 @@ public class ProfileUtilities {
else
derived.getMaxLengthElement().setUserData(DERIVATION_EQUALS, true);
}
if (derived.hasMaxValue()) {
if (!Base.compareDeep(derived.getMaxValue(), base.getMaxValue(), false))
base.setMaxValue(derived.getMaxValue().copy());
else if (trimDifferential)
derived.setMaxValue(null);
else
derived.getMaxValue().setUserData(DERIVATION_EQUALS, true);
}
if (derived.hasMinValue()) {
if (!Base.compareDeep(derived.getMinValue(), base.getMinValue(), false))
base.setMinValue(derived.getMinValue().copy());
else if (trimDifferential)
derived.setMinValue(null);
else
derived.getMinValue().setUserData(DERIVATION_EQUALS, true);
}
// todo: what to do about conditions?
// condition : id 0..*
@ -2178,4 +2196,4 @@ public class ProfileUtilities {
//}
}
}

76
org.hl7.fhir.dstu3/src/main/java/org/hl7/fhir/dstu3/conformance/ProfileUtilities.java
View File

@ -1,33 +1,33 @@
package org.hl7.fhir.dstu3.conformance;
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
import java.io.IOException;
@ -1336,6 +1336,24 @@ public class ProfileUtilities extends TranslatingUtilities {
else
derived.getMaxLengthElement().setUserData(DERIVATION_EQUALS, true);
}
if (derived.hasMaxValue()) {
if (!Base.compareDeep(derived.getMaxValue(), base.getMaxValue(), false))
base.setMaxValue(derived.getMaxValue().copy());
else if (trimDifferential)
derived.setMaxValue(null);
else
derived.getMaxValue().setUserData(DERIVATION_EQUALS, true);
}
if (derived.hasMinValue()) {
if (!Base.compareDeep(derived.getMinValue(), base.getMinValue(), false))
base.setMinValue(derived.getMinValue().copy());
else if (trimDifferential)
derived.setMinValue(null);
else
derived.getMinValue().setUserData(DERIVATION_EQUALS, true);
}
// todo: what to do about conditions?
// condition : id 0..*
@ -3681,4 +3699,4 @@ public class ProfileUtilities extends TranslatingUtilities {
}
}

76
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/conformance/ProfileUtilities.java
View File

@ -1,33 +1,33 @@
package org.hl7.fhir.r4.conformance;
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
import java.io.IOException;
@ -1840,6 +1840,24 @@ public class ProfileUtilities extends TranslatingUtilities {
else
derived.getMaxLengthElement().setUserData(DERIVATION_EQUALS, true);
}
if (derived.hasMaxValue()) {
if (!Base.compareDeep(derived.getMaxValue(), base.getMaxValue(), false))
base.setMaxValue(derived.getMaxValue().copy());
else if (trimDifferential)
derived.setMaxValue(null);
else
derived.getMaxValue().setUserData(DERIVATION_EQUALS, true);
}
if (derived.hasMinValue()) {
if (!Base.compareDeep(derived.getMinValue(), base.getMinValue(), false))
base.setMinValue(derived.getMinValue().copy());
else if (trimDifferential)
derived.setMinValue(null);
else
derived.getMinValue().setUserData(DERIVATION_EQUALS, true);
}
// todo: what to do about conditions?
// condition : id 0..*
@ -4753,4 +4771,4 @@ public class ProfileUtilities extends TranslatingUtilities {
}
}

76
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/conformance/ProfileUtilities.java
View File

@ -4,34 +4,34 @@ import java.io.BufferedReader;
import java.io.FileNotFoundException;
import java.io.FileReader;
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of HL7 nor the names of its contributors may be used to
endorse or promote products derived from this software without specific
prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
*/
import java.io.IOException;
@ -2826,6 +2826,24 @@ public class ProfileUtilities extends TranslatingUtilities {
else
derived.getMaxLengthElement().setUserData(DERIVATION_EQUALS, true);
}
if (derived.hasMaxValue()) {
if (!Base.compareDeep(derived.getMaxValue(), base.getMaxValue(), false))
base.setMaxValue(derived.getMaxValue().copy());
else if (trimDifferential)
derived.setMaxValue(null);
else
derived.getMaxValue().setUserData(DERIVATION_EQUALS, true);
}
if (derived.hasMinValue()) {
if (!Base.compareDeep(derived.getMinValue(), base.getMinValue(), false))
base.setMinValue(derived.getMinValue().copy());
else if (trimDifferential)
derived.setMinValue(null);
else
derived.getMinValue().setUserData(DERIVATION_EQUALS, true);
}
// todo: what to do about conditions?
// condition : id 0..*
@ -6595,4 +6613,4 @@ public class ProfileUtilities extends TranslatingUtilities {
return getElementById(structure, structure.getSnapshot().getElement(), element.getContentReference());
}
}
}

241
org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/ProfileUtilitiesTests.java
View File

@ -1,27 +1,21 @@
package org.hl7.fhir.r5.test;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import org.fhir.ucum.UcumException;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.r5.conformance.ProfileUtilities;
import org.hl7.fhir.r5.formats.IParser.OutputStyle;
import org.hl7.fhir.r5.formats.XmlParser;
import org.hl7.fhir.r5.model.Base;
import org.hl7.fhir.r5.model.ElementDefinition;
import org.hl7.fhir.r5.model.IntegerType;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.hl7.fhir.r5.model.StructureDefinition.TypeDerivationRule;
import org.hl7.fhir.r5.test.utils.TestingUtilities;
import org.hl7.fhir.r5.utils.EOperationOutcome;
import org.hl7.fhir.utilities.CSFile;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.validation.ValidationMessage;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.Test;
import java.util.ArrayList;
import java.util.List;
public class ProfileUtilitiesTests {
// /**
@ -32,7 +26,7 @@ public class ProfileUtilitiesTests {
// * @throws EOperationOutcome
// */
@Test
public void testSimple() throws FHIRException, FileNotFoundException, IOException, UcumException {
public void testSimple() throws FHIRException {
StructureDefinition focus = new StructureDefinition();
StructureDefinition base = TestingUtilities.context().fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
@ -40,7 +34,7 @@ public class ProfileUtilitiesTests {
focus.setBaseDefinition(base.getUrl());
focus.setType("Patient");
focus.setDerivation(TypeDerivationRule.CONSTRAINT);
List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
List<ValidationMessage> messages = new ArrayList<>();
new ProfileUtilities(TestingUtilities.context(), messages, null).generateSnapshot(base, focus, focus.getUrl(), "http://test.org/test", "Simple Test");
boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
@ -62,11 +56,7 @@ public class ProfileUtilitiesTests {
}
}
if (!ok) {
compareXml(base, focus);
throw new FHIRException("Snap shot generation simple test failed");
} else
System.out.println("Snap shot generation simple test passed");
Assertions.assertTrue(ok);
}
@ -79,13 +69,13 @@ public class ProfileUtilitiesTests {
// * @throws EOperationOutcome
// */
@Test
public void testSimple2() throws EOperationOutcome, Exception {
public void testSimple2() {
StructureDefinition base = TestingUtilities.context().fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/ValueSet").copy();
StructureDefinition focus = base.copy();
focus.setUrl(Utilities.makeUuidUrn());
focus.setSnapshot(null);
focus.setDifferential(null);
List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
List<ValidationMessage> messages = new ArrayList<>();
new ProfileUtilities(TestingUtilities.context(), messages, null).generateSnapshot(base, focus, focus.getUrl(), "http://test.org", "Simple Test");
boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
@ -111,59 +101,147 @@ public class ProfileUtilitiesTests {
}
}
if (!ok) {
compareXml(base, focus);
System.out.println("Snap shot generation simple test failed");
throw new FHIRException("Snap shot generation simple test failed");
} else
System.out.println("Snap shot generation simple test passed");
Assertions.assertTrue(ok);
}
/**
* Change one cardinality.
*/
@Test
void testCardinalityChange() {
StructureDefinition focus = new StructureDefinition();
StructureDefinition base = TestingUtilities.context().fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
focus.setUrl(Utilities.makeUuidUrn());
focus.setBaseDefinition(base.getUrl());
focus.setType(base.getType());
focus.setDerivation(TypeDerivationRule.CONSTRAINT);
ElementDefinition id = focus.getDifferential().addElement();
id.setPath("Patient.identifier");
id.setMin(1);
List<ValidationMessage> messages = new ArrayList<>();
new ProfileUtilities(TestingUtilities.context(), messages, null).generateSnapshot(base, focus, focus.getUrl(), "http://test.org", "Simple Test");
boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
if (ok) {
ElementDefinition b = base.getSnapshot().getElement().get(i);
ElementDefinition f = focus.getSnapshot().getElement().get(i);
b.setRequirements(null);
f.setRequirements(null);
if (!f.hasBase() || !b.getPath().equals(f.getPath())) {
ok = false;
}
else {
if (f.getPath().equals("Patient.identifier")) {
ok = f.getMin() == 1;
if (ok) {
f.setMin(0);
}
}
if (!Base.compareDeep(b, f, true)) {
ok = Base.compareDeep(b, f, true);
}
}
}
}
Assertions.assertTrue(ok);
}
/**
* Change min value
*/
@Test
void testMinValueChange() {
// Given
StructureDefinition focus = new StructureDefinition();
StructureDefinition base = TestingUtilities.context().fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Appointment").copy();
focus.setUrl(Utilities.makeUuidUrn());
focus.setBaseDefinition(base.getUrl());
focus.setType(base.getType());
focus.setDerivation(TypeDerivationRule.CONSTRAINT);
ElementDefinition id = focus.getDifferential().addElement();
id.setPath("Appointment.minutesDuration");
id.setMinValue(new IntegerType(1));
List<ValidationMessage> messages = new ArrayList<>();
// When
new ProfileUtilities(TestingUtilities.context(), messages, null).generateSnapshot(base, focus, focus.getUrl(), "http://test.org", "Simple Test");
// Then
boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
if (ok) {
ElementDefinition b = base.getSnapshot().getElement().get(i);
ElementDefinition f = focus.getSnapshot().getElement().get(i);
b.setRequirements(null);
f.setRequirements(null);
if (!f.hasBase() || !b.getPath().equals(f.getPath())) {
ok = false;
}
else {
if (f.getPath().equals("Appointment.minutesDuration")) {
ok = f.getMinValue() instanceof IntegerType && ((IntegerType) f.getMinValue()).getValue() == 1;
if (ok) {
// Can't set minValue to null so change base minValue to IntegerType(1)
b.setMinValue(new IntegerType(1));
}
}
if (!Base.compareDeep(b, f, true)) {
ok = false;
}
}
}
}
Assertions.assertTrue(ok);
}
/**
* Change max value
*/
@Test
void testMaxValueChange() {
// Given
StructureDefinition focus = new StructureDefinition();
StructureDefinition base = TestingUtilities.context().fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Appointment").copy();
focus.setUrl(Utilities.makeUuidUrn());
focus.setBaseDefinition(base.getUrl());
focus.setType(base.getType());
focus.setDerivation(TypeDerivationRule.CONSTRAINT);
ElementDefinition id = focus.getDifferential().addElement();
id.setPath("Appointment.minutesDuration");
id.setMaxValue(new IntegerType(1));
List<ValidationMessage> messages = new ArrayList<>();
// When
new ProfileUtilities(TestingUtilities.context(), messages, null).generateSnapshot(base, focus, focus.getUrl(), "http://test.org", "Simple Test");
// Then
boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
if (ok) {
ElementDefinition b = base.getSnapshot().getElement().get(i);
ElementDefinition f = focus.getSnapshot().getElement().get(i);
b.setRequirements(null);
f.setRequirements(null);
if (!f.hasBase() || !b.getPath().equals(f.getPath())) {
ok = false;
}
else {
if (f.getPath().equals("Appointment.minutesDuration")) {
ok = f.getMaxValue() instanceof IntegerType && ((IntegerType) f.getMaxValue()).getValue() == 1;
if (ok) {
// Can't set maxValue to null so change base maxValue to IntegerType(1)
b.setMaxValue(new IntegerType(1));
}
}
if (!Base.compareDeep(b, f, true)) {
ok = false;
}
}
}
}
Assertions.assertTrue(ok);
}
// /**
// * Change one cardinality.
// *
// * @param context2
// * @
// * @throws EOperationOutcome
// */
// private void testCardinalityChange() throws EOperationOutcome, Exception {
// StructureDefinition focus = new StructureDefinition();
// StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
// focus.setUrl(Utilities.makeUuidUrn());
// focus.setBaseDefinition(base.getUrl());
// focus.setType(base.getType());
// focus.setDerivation(TypeDerivationRule.CONSTRAINT);
// ElementDefinition id = focus.getDifferential().addElement();
// id.setPath("Patient.identifier");
// id.setMin(1);
// List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
// new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test" );
//
// boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
// for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
// if (ok) {
// ElementDefinition b = base.getSnapshot().getElement().get(i);
// ElementDefinition f = focus.getSnapshot().getElement().get(i);
// if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
// ok = false;
// else {
// f.setBase(null);
// if (f.getPath().equals("Patient.identifier")) {
// ok = f.getMin() == 1;
// if (ok)
// f.setMin(0);
// }
// ok = ok && Base.compareDeep(b, f, true);
// }
// }
// }
//
// if (!ok) {
// compareXml(base, focus);
// throw new FHIRException("Snap shot generation chenge cardinality test failed");
// } else
// System.out.println("Snap shot generation chenge cardinality test passed");
// }
//
// /**
// * check that documentation appending is working
@ -794,23 +872,4 @@ public class ProfileUtilitiesTests {
// }
//
private void compareXml(StructureDefinition base, StructureDefinition focus) throws FileNotFoundException, IOException {
base.setText(null);
focus.setText(null);
base.setDifferential(null);
// focus.setDifferential(null);
String f1 = Utilities.path("c:", "temp", "base.xml");
String f2 = Utilities.path("c:", "temp", "derived.xml");
new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(f1), base);
;
new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(f2), focus);
;
String diff = Utilities.path(System.getenv("ProgramFiles(X86)"), "WinMerge", "WinMergeU.exe");
List<String> command = new ArrayList<String>();
command.add("\"" + diff + "\" \"" + f1 + "\" \"" + f2 + "\"");
ProcessBuilder builder = new ProcessBuilder(command);
builder.directory(new CSFile("c:\\temp"));
builder.start();
}
}
}