Merge pull request #7 from lmckenzi/Snapshot-issue
Revamped to test bad path
This commit is contained in:
Grahame Grieve
GitHub
commit
25506ddd95
File diff suppressed because it is too large
Load Diff
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@ -1,444 +1,464 @@
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package org.hl7.fhir.r4.test;
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import java.io.File;
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import java.io.FileInputStream;
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import java.io.FileOutputStream;
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import java.io.IOException;
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import java.util.ArrayList;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import javax.xml.parsers.ParserConfigurationException;
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import org.apache.commons.lang3.NotImplementedException;
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import org.hl7.fhir.exceptions.DefinitionException;
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import org.hl7.fhir.exceptions.FHIRException;
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import org.hl7.fhir.exceptions.FHIRFormatError;
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import org.hl7.fhir.exceptions.PathEngineException;
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import org.hl7.fhir.r4.conformance.ProfileUtilities;
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import org.hl7.fhir.r4.conformance.ProfileUtilities.ProfileKnowledgeProvider;
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import org.hl7.fhir.r4.context.SimpleWorkerContext;
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import org.hl7.fhir.r4.formats.IParser.OutputStyle;
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import org.hl7.fhir.r4.formats.XmlParser;
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import org.hl7.fhir.r4.model.Base;
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import org.hl7.fhir.r4.model.Coding;
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import org.hl7.fhir.r4.model.ElementDefinition.ElementDefinitionBindingComponent;
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import org.hl7.fhir.r4.model.ExpressionNode.CollectionStatus;
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import org.hl7.fhir.r4.model.MetadataResource;
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import org.hl7.fhir.r4.model.Resource;
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import org.hl7.fhir.r4.model.StructureDefinition;
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import org.hl7.fhir.r4.model.StructureDefinition.StructureDefinitionKind;
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import org.hl7.fhir.r4.model.StructureDefinition.TypeDerivationRule;
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import org.hl7.fhir.r4.model.TestScript;
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import org.hl7.fhir.r4.model.TestScript.AssertionResponseTypes;
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import org.hl7.fhir.r4.model.TestScript.SetupActionAssertComponent;
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import org.hl7.fhir.r4.model.TestScript.SetupActionOperationComponent;
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import org.hl7.fhir.r4.model.TestScript.TestActionComponent;
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import org.hl7.fhir.r4.model.TestScript.TestScriptFixtureComponent;
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import org.hl7.fhir.r4.model.TestScript.TestScriptTestComponent;
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import org.hl7.fhir.r4.test.utils.TestingUtilities;
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import org.hl7.fhir.r4.model.TypeDetails;
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import org.hl7.fhir.r4.utils.CodingUtilities;
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import org.hl7.fhir.r4.utils.FHIRPathEngine;
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import org.hl7.fhir.r4.utils.FHIRPathEngine.IEvaluationContext;
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import org.hl7.fhir.r4.utils.IResourceValidator;
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import org.hl7.fhir.r4.utils.NarrativeGenerator;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.validation.ValidationMessage;
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import org.junit.Test;
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import org.junit.runner.RunWith;
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import org.junit.runners.Parameterized;
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import org.junit.runners.Parameterized.Parameters;
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import junit.framework.Assert;
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@RunWith(Parameterized.class)
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public class SnapShotGenerationTests {
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public class TestPKP implements ProfileKnowledgeProvider {
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@Override
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public boolean isDatatype(String name) {
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StructureDefinition sd = TestingUtilities.context().fetchTypeDefinition(name);
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return (sd != null) && (sd.getDerivation() == TypeDerivationRule.SPECIALIZATION) && (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE || sd.getKind() == StructureDefinitionKind.COMPLEXTYPE);
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}
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@Override
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public boolean isResource(String typeSimple) {
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StructureDefinition sd = TestingUtilities.context().fetchTypeDefinition(name);
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return (sd != null) && (sd.getDerivation() == TypeDerivationRule.SPECIALIZATION) && (sd.getKind() == StructureDefinitionKind.RESOURCE);
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}
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@Override
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public boolean hasLinkFor(String typeSimple) {
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return isDatatype(name);
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}
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@Override
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public String getLinkFor(String corePath, String typeSimple) {
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return Utilities.pathURL(corePath, "datatypes.html#"+typeSimple);
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}
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@Override
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public BindingResolution resolveBinding(StructureDefinition def, ElementDefinitionBindingComponent binding, String path) throws FHIRException {
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BindingResolution br = new BindingResolution();
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br.url = path+"/something.html";
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br.display = "something";
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return br;
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}
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@Override
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public String getLinkForProfile(StructureDefinition profile, String url) {
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StructureDefinition sd = TestingUtilities.context().fetchResource(StructureDefinition.class, url);
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if (sd == null)
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return url+"|"+url;
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else
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return sd.getId()+".html|"+sd.present();
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}
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@Override
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public boolean prependLinks() {
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return false;
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}
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}
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private static class SnapShotGenerationTestsContext implements IEvaluationContext {
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private Map<String, Resource> fixtures;
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private Map<String, StructureDefinition> snapshots = new HashMap<String, StructureDefinition>();
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public TestScript tests;
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public void checkTestsDetails() {
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if (!"http://hl7.org/fhir/tests/snapshotgeneration".equals(tests.getUrl()))
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throw new Error("Wrong URL on test script");
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if (!tests.getSetup().isEmpty())
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throw new Error("Setup is not supported");
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if (!tests.getTeardown().isEmpty())
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throw new Error("Teardown is not supported");
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Set<String> ids = new HashSet<String>();
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Set<String> urls = new HashSet<String>();
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for (Resource r : tests.getContained()) {
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if (ids.contains(r.getId()))
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throw new Error("Unsupported: duplicate contained resource on fixture id "+r.getId());
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ids.add(r.getId());
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if (r instanceof MetadataResource) {
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MetadataResource md = (MetadataResource) r;
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if (urls.contains(md.getUrl()))
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throw new Error("Unsupported: duplicate canonical url "+md.getUrl()+" on fixture id "+r.getId());
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urls.add(md.getUrl());
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}
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}
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for (TestScriptFixtureComponent r : tests.getFixture()) {
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if (ids.contains(r.getId()))
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throw new Error("Unsupported: duplicate contained resource or fixture id "+r.getId());
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ids.add(r.getId());
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}
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Set<String> names = new HashSet<String>();
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for (TestScriptTestComponent test : tests.getTest()) {
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if (names.contains(test.getName()))
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throw new Error("Unsupported: duplicate name "+test.getName());
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names.add(test.getName());
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if (test.getAction().size() < 2)
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throw new Error("Unsupported: multiple actions required");
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if (!test.getActionFirstRep().hasOperation())
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throw new Error("Unsupported: first action must be an operation");
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for (int i = 0; i < test.getAction().size(); i++) {
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// if (!test.getAction().get(i).hasAssert())
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// throw new Error("Unsupported: following actions must be an asserts");
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TestActionComponent action = test.getAction().get(i);
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if (action.hasOperation()) {
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SetupActionOperationComponent op = test.getActionFirstRep().getOperation();
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if (!CodingUtilities.matches(op.getType(), "http://hl7.org/fhir/testscript-operation-codes", "snapshot")
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&& !CodingUtilities.matches(op.getType(), "http://hl7.org/fhir/testscript-operation-codes", "sortDifferential"))
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throw new Error("Unsupported action operation type "+CodingUtilities.present(op.getType()));
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if (!"StructureDefinition".equals(op.getResource()))
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throw new Error("Unsupported action operation resource "+op.getResource());
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if (!op.hasResponseId())
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throw new Error("Unsupported action operation: no response id");
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if (!op.hasSourceId())
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throw new Error("Unsupported action operation: no source id");
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if (!hasSource(op.getSourceId()))
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throw new Error("Unsupported action operation: source id could not be resolved");
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} else if (action.hasAssert()) {
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SetupActionAssertComponent a = action.getAssert();
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if (!a.hasLabel())
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throw new Error("Unsupported: actions must have a label");
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if (!a.hasDescription())
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throw new Error("Unsupported: actions must have a description");
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if (!a.hasExpression() && !a.hasResponse())
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throw new Error("Unsupported: actions must have an expression or a response");
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} else {
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throw new Error("Unsupported: Unrecognized action type");
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}
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}
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}
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}
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private boolean hasSource(String sourceId) {
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for (TestScriptFixtureComponent ds : tests.getFixture()) {
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if (sourceId.equals(ds.getId()))
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return true;
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}
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for (Resource r : tests.getContained()) {
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if (sourceId.equals(r.getId()))
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return true;
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}
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return false;
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}
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public Resource fetchFixture(String id) {
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if (fixtures.containsKey(id))
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return fixtures.get(id);
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for (TestScriptFixtureComponent ds : tests.getFixture()) {
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if (id.equals(ds.getId()))
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throw new Error("not done yet");
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}
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for (Resource r : tests.getContained()) {
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if (id.equals(r.getId()))
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return r;
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}
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return null;
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}
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// FHIRPath methods
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@Override
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public Base resolveConstant(Object appContext, String name, boolean beforeContext) throws PathEngineException {
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return null;
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}
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@Override
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public TypeDetails resolveConstantType(Object appContext, String name) throws PathEngineException {
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return null;
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}
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@Override
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public boolean log(String argument, List<Base> focus) {
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System.out.println(argument+": "+fp.convertToString(focus));
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return true;
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}
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@Override
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public FunctionDetails resolveFunction(String functionName) {
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if ("fixture".equals(functionName))
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return new FunctionDetails("Access a fixture defined in the testing context", 0, 1);
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return null;
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}
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@Override
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public TypeDetails checkFunction(Object appContext, String functionName, List<TypeDetails> parameters) throws PathEngineException {
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if ("fixture".equals(functionName))
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return new TypeDetails(CollectionStatus.SINGLETON, TestingUtilities.context().getResourceNamesAsSet());
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return null;
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}
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@Override
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public List<Base> executeFunction(Object appContext, String functionName, List<List<Base>> parameters) {
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if ("fixture".equals(functionName)) {
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String id = fp.convertToString(parameters.get(0));
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Resource res = fetchFixture(id);
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if (res != null) {
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List<Base> list = new ArrayList<Base>();
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list.add(res);
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return list;
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}
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}
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return null;
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}
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@Override
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public Base resolveReference(Object appContext, String url) {
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// TODO Auto-generated method stub
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return null;
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}
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@Override
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public boolean conformsToProfile(Object appContext, Base item, String url) throws FHIRException {
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IResourceValidator val = TestingUtilities.context().newValidator();
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List<ValidationMessage> valerrors = new ArrayList<ValidationMessage>();
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if (item instanceof Resource) {
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val.validate(appContext, valerrors, (Resource) item, url);
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boolean ok = true;
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for (ValidationMessage v : valerrors)
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ok = ok && v.getLevel().isError();
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return ok;
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}
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throw new NotImplementedException("Not done yet (IGPublisherHostServices.SnapShotGenerationTestsContext), when item is element");
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}
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}
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private static FHIRPathEngine fp;
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@Parameters(name = "{index}: file {0}")
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public static Iterable<Object[]> data() throws ParserConfigurationException, IOException, FHIRFormatError {
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SnapShotGenerationTestsContext context = new SnapShotGenerationTestsContext();
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context.tests = (TestScript) new XmlParser().parse(new FileInputStream(TestingUtilities.resourceNameToFile("snapshot-generation-tests.xml")));
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context.checkTestsDetails();
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List<Object[]> objects = new ArrayList<Object[]>(context.tests.getTest().size());
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for (TestScriptTestComponent e : context.tests.getTest()) {
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objects.add(new Object[] { e.getName(), e, context });
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}
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return objects;
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}
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private final TestScriptTestComponent test;
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private final String name;
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private SnapShotGenerationTestsContext context;
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public SnapShotGenerationTests(String name, TestScriptTestComponent e, SnapShotGenerationTestsContext context) {
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this.name = name;
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this.test = e;
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this.context = context;
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}
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@SuppressWarnings("deprecation")
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@Test
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public void test() throws FHIRException {
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try {
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for (Resource cr : context.tests.getContained()) {
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if (cr instanceof StructureDefinition) {
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StructureDefinition sd = (StructureDefinition) cr;
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if (sd.getType().equals("Extension")) {
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if (TestingUtilities.context().fetchResource(StructureDefinition.class, sd.getUrl()) == null) {
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sd.setUserData("path", "test-"+sd.getId()+".html");
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StructureDefinition extd = TestingUtilities.context().fetchResource(StructureDefinition.class, sd.getBaseDefinition());
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new ProfileUtilities(TestingUtilities.context(), null, null).generateSnapshot(extd, sd, sd.getUrl(), sd.getName());
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TestingUtilities.context().cacheResource(sd);
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debugSaveResource(sd);
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}
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}
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}
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}
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if (fp == null)
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fp = new FHIRPathEngine(TestingUtilities.context());
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fp.setHostServices(context);
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resolveFixtures();
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TestScript.AssertionResponseTypes lastOpOutcome = null;
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for (int i = 0; i < test.getAction().size(); i++) {
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TestActionComponent action = test.getAction().get(i);
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if (action.hasOperation()) {
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lastOpOutcome = AssertionResponseTypes.OKAY;
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try {
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SetupActionOperationComponent op = action.getOperation();
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Coding opType = op.getType();
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if (opType.getSystem().equals("http://hl7.org/fhir/testscript-operation-codes") && opType.getCode().equals("snapshot")) {
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StructureDefinition source = (StructureDefinition) context.fetchFixture(op.getSourceId());
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StructureDefinition base = getSD(source.getBaseDefinition());
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StructureDefinition output = source.copy();
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ProfileUtilities pu = new ProfileUtilities(TestingUtilities.context(), null, new TestPKP());
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pu.setIds(source, false);
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if ("sort=true".equals(op.getParams())) {
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List<String> errors = new ArrayList<String>();
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pu.sortDifferential(base, output, source.getName(), errors);
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if (errors.size() > 0)
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throw new FHIRException("Sort failed: "+errors.toString());
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}
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pu.generateSnapshot(base, output, source.getUrl(), source.getName());
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debugSaveResource(output);
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context.fixtures.put(op.getResponseId(), output);
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context.snapshots.put(output.getUrl(), output);
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new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(System.getProperty("java.io.tmpdir"), op.getResponseId()+".xml")), output);
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if (output.getDifferential().hasElement())
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new NarrativeGenerator("", "http://hl7.org/fhir", TestingUtilities.context()).setPkp(new TestPKP()).generate(output, null);
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new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(System.getProperty("java.io.tmpdir"), op.getResponseId()+"-d.xml")), output);
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} else if (opType.getSystem().equals("http://hl7.org/fhir/testscript-operation-codes") && opType.getCode().equals("sortDifferential")) {
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StructureDefinition source = (StructureDefinition) context.fetchFixture(op.getSourceId());
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StructureDefinition base = getSD(source.getBaseDefinition());
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StructureDefinition output = source.copy();
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ProfileUtilities pu = new ProfileUtilities(TestingUtilities.context(), null, null);
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pu.setIds(source, false);
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List<String> errors = new ArrayList<String>();
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pu.sortDifferential(base, output, output.getUrl(), errors);
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if (!errors.isEmpty())
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throw new FHIRException(errors.get(0));
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context.fixtures.put(op.getResponseId(), output);
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context.snapshots.put(output.getUrl(), output);
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new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(System.getProperty("java.io.tmpdir"), op.getResponseId()+".xml")), output);
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} else {
|
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throw new Error("Unsupported operation: " + opType.getSystem() + " : " + opType.getCode());
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||||
}
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} catch (Exception e) {
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lastOpOutcome = AssertionResponseTypes.BAD;
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}
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||||
|
||||
} else if (action.hasAssert()) {
|
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SetupActionAssertComponent a = action.getAssert();
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if (a.getResponse() != null) {
|
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Assert.assertTrue(a.getLabel()+" (response): "+a.getDescription(), a.getResponse() == lastOpOutcome);
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}
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if (a.hasExpression()) {
|
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boolean ok = fp.evaluateToBoolean(new StructureDefinition(), new StructureDefinition(), a.getExpression());
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Assert.assertTrue(a.getLabel()+": "+a.getDescription(), ok);
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}
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||||
}
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||||
}
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||||
} catch (Exception e) {
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||||
e.printStackTrace();
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||||
throw new FHIRException(e);
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||||
}
|
||||
}
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||||
|
||||
|
||||
private void debugSaveResource(Resource r) throws IOException {
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String dir = System.getProperty("java.io.tmpdir");
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if (new File("c:\\temp").exists())
|
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dir = "c:\\temp";
|
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String fn = Utilities.path(dir, r.fhirType()+"-"+r.getId()+".xml");
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new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(fn), r);
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}
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||||
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private StructureDefinition getSD(String url) throws DefinitionException, FHIRException, IOException {
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StructureDefinition sd = context.snapshots.get(url);
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if (sd == null)
|
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sd = findContainedProfile(url);
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if (sd == null)
|
||||
sd = TestingUtilities.context().fetchResource(StructureDefinition.class, url);
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||||
return sd;
|
||||
}
|
||||
|
||||
private StructureDefinition findContainedProfile(String url) throws DefinitionException, FHIRException, IOException {
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||||
for (Resource r : context.tests.getContained()) {
|
||||
if (r instanceof StructureDefinition) {
|
||||
StructureDefinition sd = (StructureDefinition) r;
|
||||
if (sd.getUrl().equals(url)) {
|
||||
StructureDefinition p = sd.copy();
|
||||
ProfileUtilities pu = new ProfileUtilities(TestingUtilities.context(), null, null);
|
||||
pu.setIds(p, false);
|
||||
List<String> errors = new ArrayList<String>();
|
||||
pu.sortDifferential(getSD(p.getBaseDefinition()), p, url, errors);
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||||
if (!errors.isEmpty())
|
||||
throw new FHIRException(errors.get(0));
|
||||
pu.generateSnapshot(getSD(p.getBaseDefinition()), p, p.getUrl(), p.getName());
|
||||
debugSaveResource(p);
|
||||
return p;
|
||||
}
|
||||
}
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
private void resolveFixtures() {
|
||||
if (context.fixtures == null) {
|
||||
context.fixtures = new HashMap<String, Resource>();
|
||||
for (TestScriptFixtureComponent fd : context.tests.getFixture()) {
|
||||
Resource r = TestingUtilities.context().fetchResource(Resource.class, fd.getResource().getReference());
|
||||
context.fixtures.put(fd.getId(), r);
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
}
|
||||
package org.hl7.fhir.r4.test;
|
||||
|
||||
import java.io.File;
|
||||
import java.io.FileInputStream;
|
||||
import java.io.FileOutputStream;
|
||||
import java.io.IOException;
|
||||
import java.util.ArrayList;
|
||||
import java.util.HashMap;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
|
||||
import javax.xml.parsers.ParserConfigurationException;
|
||||
|
||||
import org.apache.commons.lang3.NotImplementedException;
|
||||
import org.hl7.fhir.exceptions.DefinitionException;
|
||||
import org.hl7.fhir.exceptions.FHIRException;
|
||||
import org.hl7.fhir.exceptions.FHIRFormatError;
|
||||
import org.hl7.fhir.exceptions.PathEngineException;
|
||||
import org.hl7.fhir.r4.conformance.ProfileUtilities;
|
||||
import org.hl7.fhir.r4.conformance.ProfileUtilities.ProfileKnowledgeProvider;
|
||||
import org.hl7.fhir.r4.context.SimpleWorkerContext;
|
||||
import org.hl7.fhir.r4.formats.IParser.OutputStyle;
|
||||
import org.hl7.fhir.r4.formats.XmlParser;
|
||||
import org.hl7.fhir.r4.model.Base;
|
||||
import org.hl7.fhir.r4.model.Coding;
|
||||
import org.hl7.fhir.r4.model.ElementDefinition.ElementDefinitionBindingComponent;
|
||||
import org.hl7.fhir.r4.model.ExpressionNode.CollectionStatus;
|
||||
import org.hl7.fhir.r4.model.MetadataResource;
|
||||
import org.hl7.fhir.r4.model.Resource;
|
||||
import org.hl7.fhir.r4.model.StructureDefinition;
|
||||
import org.hl7.fhir.r4.model.StructureDefinition.StructureDefinitionKind;
|
||||
import org.hl7.fhir.r4.model.StructureDefinition.TypeDerivationRule;
|
||||
import org.hl7.fhir.r4.model.TestScript;
|
||||
import org.hl7.fhir.r4.model.TestScript.AssertionResponseTypes;
|
||||
import org.hl7.fhir.r4.model.TestScript.SetupActionAssertComponent;
|
||||
import org.hl7.fhir.r4.model.TestScript.SetupActionOperationComponent;
|
||||
import org.hl7.fhir.r4.model.TestScript.TestActionComponent;
|
||||
import org.hl7.fhir.r4.model.TestScript.TestScriptFixtureComponent;
|
||||
import org.hl7.fhir.r4.model.TestScript.TestScriptTestComponent;
|
||||
import org.hl7.fhir.r4.test.utils.TestingUtilities;
|
||||
import org.hl7.fhir.r4.model.TypeDetails;
|
||||
import org.hl7.fhir.r4.utils.CodingUtilities;
|
||||
import org.hl7.fhir.r4.utils.FHIRPathEngine;
|
||||
import org.hl7.fhir.r4.utils.FHIRPathEngine.IEvaluationContext;
|
||||
import org.hl7.fhir.r4.utils.IResourceValidator;
|
||||
import org.hl7.fhir.r4.utils.NarrativeGenerator;
|
||||
import org.hl7.fhir.utilities.Utilities;
|
||||
import org.hl7.fhir.utilities.validation.ValidationMessage;
|
||||
import org.junit.Test;
|
||||
import org.junit.runner.RunWith;
|
||||
import org.junit.runners.Parameterized;
|
||||
import org.junit.runners.Parameterized.Parameters;
|
||||
|
||||
import junit.framework.Assert;
|
||||
|
||||
@RunWith(Parameterized.class)
|
||||
public class SnapShotGenerationTests {
|
||||
|
||||
public class TestPKP implements ProfileKnowledgeProvider {
|
||||
|
||||
@Override
|
||||
public boolean isDatatype(String name) {
|
||||
StructureDefinition sd = TestingUtilities.context().fetchTypeDefinition(name);
|
||||
return (sd != null) && (sd.getDerivation() == TypeDerivationRule.SPECIALIZATION) && (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE || sd.getKind() == StructureDefinitionKind.COMPLEXTYPE);
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean isResource(String typeSimple) {
|
||||
StructureDefinition sd = TestingUtilities.context().fetchTypeDefinition(name);
|
||||
return (sd != null) && (sd.getDerivation() == TypeDerivationRule.SPECIALIZATION) && (sd.getKind() == StructureDefinitionKind.RESOURCE);
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean hasLinkFor(String typeSimple) {
|
||||
return isDatatype(name);
|
||||
}
|
||||
|
||||
@Override
|
||||
public String getLinkFor(String corePath, String typeSimple) {
|
||||
return Utilities.pathURL(corePath, "datatypes.html#"+typeSimple);
|
||||
}
|
||||
|
||||
@Override
|
||||
public BindingResolution resolveBinding(StructureDefinition def, ElementDefinitionBindingComponent binding, String path) throws FHIRException {
|
||||
BindingResolution br = new BindingResolution();
|
||||
br.url = path+"/something.html";
|
||||
br.display = "something";
|
||||
return br;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String getLinkForProfile(StructureDefinition profile, String url) {
|
||||
StructureDefinition sd = TestingUtilities.context().fetchResource(StructureDefinition.class, url);
|
||||
if (sd == null)
|
||||
return url+"|"+url;
|
||||
else
|
||||
return sd.getId()+".html|"+sd.present();
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean prependLinks() {
|
||||
return false;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
private static class SnapShotGenerationTestsContext implements IEvaluationContext {
|
||||
private Map<String, Resource> fixtures;
|
||||
private Map<String, StructureDefinition> snapshots = new HashMap<String, StructureDefinition>();
|
||||
public TestScript tests;
|
||||
|
||||
public void checkTestsDetails() {
|
||||
if (!"http://hl7.org/fhir/tests/snapshotgeneration".equals(tests.getUrl()))
|
||||
throw new Error("Wrong URL on test script");
|
||||
if (!tests.getSetup().isEmpty())
|
||||
throw new Error("Setup is not supported");
|
||||
if (!tests.getTeardown().isEmpty())
|
||||
throw new Error("Teardown is not supported");
|
||||
Set<String> ids = new HashSet<String>();
|
||||
Set<String> urls = new HashSet<String>();
|
||||
for (Resource r : tests.getContained()) {
|
||||
if (ids.contains(r.getId()))
|
||||
throw new Error("Unsupported: duplicate contained resource on fixture id "+r.getId());
|
||||
ids.add(r.getId());
|
||||
if (r instanceof MetadataResource) {
|
||||
MetadataResource md = (MetadataResource) r;
|
||||
if (urls.contains(md.getUrl()))
|
||||
throw new Error("Unsupported: duplicate canonical url "+md.getUrl()+" on fixture id "+r.getId());
|
||||
urls.add(md.getUrl());
|
||||
}
|
||||
}
|
||||
for (TestScriptFixtureComponent r : tests.getFixture()) {
|
||||
if (ids.contains(r.getId()))
|
||||
throw new Error("Unsupported: duplicate contained resource or fixture id "+r.getId());
|
||||
ids.add(r.getId());
|
||||
}
|
||||
Set<String> names = new HashSet<String>();
|
||||
for (TestScriptTestComponent test : tests.getTest()) {
|
||||
if (names.contains(test.getName()))
|
||||
throw new Error("Unsupported: duplicate name "+test.getName());
|
||||
names.add(test.getName());
|
||||
if (test.getAction().size() < 2)
|
||||
throw new Error("Unsupported: multiple actions required");
|
||||
if (!test.getActionFirstRep().hasOperation())
|
||||
throw new Error("Unsupported: first action must be an operation");
|
||||
for (int i = 0; i < test.getAction().size(); i++) {
|
||||
// if (!test.getAction().get(i).hasAssert())
|
||||
// throw new Error("Unsupported: following actions must be an asserts");
|
||||
TestActionComponent action = test.getAction().get(i);
|
||||
if (action.hasOperation()) {
|
||||
SetupActionOperationComponent op = test.getActionFirstRep().getOperation();
|
||||
if (!CodingUtilities.matches(op.getType(), "http://hl7.org/fhir/testscript-operation-codes", "snapshot")
|
||||
&& !CodingUtilities.matches(op.getType(), "http://hl7.org/fhir/testscript-operation-codes", "sortDifferential"))
|
||||
throw new Error("Unsupported action operation type "+CodingUtilities.present(op.getType()));
|
||||
if (!"StructureDefinition".equals(op.getResource()))
|
||||
throw new Error("Unsupported action operation resource "+op.getResource());
|
||||
if (!op.hasResponseId())
|
||||
throw new Error("Unsupported action operation: no response id");
|
||||
if (!op.hasSourceId())
|
||||
throw new Error("Unsupported action operation: no source id");
|
||||
if (!hasSource(op.getSourceId()))
|
||||
throw new Error("Unsupported action operation: source id could not be resolved");
|
||||
} else if (action.hasAssert()) {
|
||||
SetupActionAssertComponent a = action.getAssert();
|
||||
if (!a.hasLabel())
|
||||
throw new Error("Unsupported: actions must have a label");
|
||||
if (!a.hasDescription())
|
||||
throw new Error("Unsupported: actions must have a description");
|
||||
if (!a.hasExpression() && !a.hasResponse())
|
||||
throw new Error("Unsupported: actions must have an expression or a response");
|
||||
} else {
|
||||
throw new Error("Unsupported: Unrecognized action type");
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
private boolean hasSource(String sourceId) {
|
||||
for (TestScriptFixtureComponent ds : tests.getFixture()) {
|
||||
if (sourceId.equals(ds.getId()))
|
||||
return true;
|
||||
}
|
||||
for (Resource r : tests.getContained()) {
|
||||
if (sourceId.equals(r.getId()))
|
||||
return true;
|
||||
}
|
||||
return false;
|
||||
}
|
||||
|
||||
public Resource fetchFixture(String id) {
|
||||
if (fixtures.containsKey(id))
|
||||
return fixtures.get(id);
|
||||
|
||||
for (TestScriptFixtureComponent ds : tests.getFixture()) {
|
||||
if (id.equals(ds.getId()))
|
||||
throw new Error("not done yet");
|
||||
}
|
||||
for (Resource r : tests.getContained()) {
|
||||
if (id.equals(r.getId()))
|
||||
return r;
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
// FHIRPath methods
|
||||
@Override
|
||||
public Base resolveConstant(Object appContext, String name, boolean beforeContext) throws PathEngineException {
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public TypeDetails resolveConstantType(Object appContext, String name) throws PathEngineException {
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean log(String argument, List<Base> focus) {
|
||||
System.out.println(argument+": "+fp.convertToString(focus));
|
||||
return true;
|
||||
}
|
||||
|
||||
@Override
|
||||
public FunctionDetails resolveFunction(String functionName) {
|
||||
if ("fixture".equals(functionName))
|
||||
return new FunctionDetails("Access a fixture defined in the testing context", 0, 1);
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public TypeDetails checkFunction(Object appContext, String functionName, List<TypeDetails> parameters) throws PathEngineException {
|
||||
if ("fixture".equals(functionName))
|
||||
return new TypeDetails(CollectionStatus.SINGLETON, TestingUtilities.context().getResourceNamesAsSet());
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public List<Base> executeFunction(Object appContext, String functionName, List<List<Base>> parameters) {
|
||||
if ("fixture".equals(functionName)) {
|
||||
String id = fp.convertToString(parameters.get(0));
|
||||
Resource res = fetchFixture(id);
|
||||
if (res != null) {
|
||||
List<Base> list = new ArrayList<Base>();
|
||||
list.add(res);
|
||||
return list;
|
||||
}
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Base resolveReference(Object appContext, String url) {
|
||||
// TODO Auto-generated method stub
|
||||
return null;
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean conformsToProfile(Object appContext, Base item, String url) throws FHIRException {
|
||||
IResourceValidator val = TestingUtilities.context().newValidator();
|
||||
List<ValidationMessage> valerrors = new ArrayList<ValidationMessage>();
|
||||
if (item instanceof Resource) {
|
||||
val.validate(appContext, valerrors, (Resource) item, url);
|
||||
boolean ok = true;
|
||||
for (ValidationMessage v : valerrors)
|
||||
ok = ok && v.getLevel().isError();
|
||||
return ok;
|
||||
}
|
||||
throw new NotImplementedException("Not done yet (IGPublisherHostServices.SnapShotGenerationTestsContext), when item is element");
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
private static FHIRPathEngine fp;
|
||||
|
||||
@Parameters(name = "{index}: file {0}")
|
||||
public static Iterable<Object[]> data() throws ParserConfigurationException, IOException, FHIRFormatError {
|
||||
SnapShotGenerationTestsContext context = new SnapShotGenerationTestsContext();
|
||||
context.tests = (TestScript) new XmlParser().parse(new FileInputStream(TestingUtilities.resourceNameToFile("snapshot-generation-tests.xml")));
|
||||
|
||||
context.checkTestsDetails();
|
||||
|
||||
List<Object[]> objects = new ArrayList<Object[]>(context.tests.getTest().size());
|
||||
|
||||
for (TestScriptTestComponent e : context.tests.getTest()) {
|
||||
objects.add(new Object[] { e.getName(), e, context });
|
||||
}
|
||||
return objects;
|
||||
}
|
||||
|
||||
|
||||
private final TestScriptTestComponent test;
|
||||
private final String name;
|
||||
private SnapShotGenerationTestsContext context;
|
||||
|
||||
public SnapShotGenerationTests(String name, TestScriptTestComponent e, SnapShotGenerationTestsContext context) {
|
||||
this.name = name;
|
||||
this.test = e;
|
||||
this.context = context;
|
||||
}
|
||||
|
||||
@SuppressWarnings("deprecation")
|
||||
@Test
|
||||
public void test() throws FHIRException {
|
||||
try {
|
||||
for (Resource cr : context.tests.getContained()) {
|
||||
if (cr instanceof StructureDefinition) {
|
||||
StructureDefinition sd = (StructureDefinition) cr;
|
||||
if (sd.getType().equals("Extension")) {
|
||||
if (TestingUtilities.context().fetchResource(StructureDefinition.class, sd.getUrl()) == null) {
|
||||
sd.setUserData("path", "test-"+sd.getId()+".html");
|
||||
StructureDefinition extd = TestingUtilities.context().fetchResource(StructureDefinition.class, sd.getBaseDefinition());
|
||||
new ProfileUtilities(TestingUtilities.context(), null, null).generateSnapshot(extd, sd, sd.getUrl(), sd.getName());
|
||||
TestingUtilities.context().cacheResource(sd);
|
||||
debugSaveResource(sd);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
if (fp == null)
|
||||
fp = new FHIRPathEngine(TestingUtilities.context());
|
||||
fp.setHostServices(context);
|
||||
|
||||
resolveFixtures();
|
||||
|
||||
TestScript.AssertionResponseTypes lastOpOutcome = null;
|
||||
for (int i = 0; i < test.getAction().size(); i++) {
|
||||
TestActionComponent action = test.getAction().get(i);
|
||||
if (action.hasOperation()) {
|
||||
lastOpOutcome = AssertionResponseTypes.OKAY;
|
||||
try {
|
||||
SetupActionOperationComponent op = action.getOperation();
|
||||
Coding opType = op.getType();
|
||||
if (opType.getSystem().equals("http://hl7.org/fhir/testscript-operation-codes") && opType.getCode().equals("snapshot")) {
|
||||
StructureDefinition source = (StructureDefinition) context.fetchFixture(op.getSourceId());
|
||||
StructureDefinition base = getSD(source.getBaseDefinition());
|
||||
StructureDefinition output = source.copy();
|
||||
ProfileUtilities pu = new ProfileUtilities(TestingUtilities.context(), null, new TestPKP());
|
||||
pu.setIds(source, false);
|
||||
if ("sort=true".equals(op.getParams())) {
|
||||
List<String> errors = new ArrayList<String>();
|
||||
pu.sortDifferential(base, output, source.getName(), errors);
|
||||
if (errors.size() > 0)
|
||||
throw new FHIRException("Sort failed: "+errors.toString());
|
||||
}
|
||||
pu.generateSnapshot(base, output, source.getUrl(), source.getName());
|
||||
debugSaveResource(output);
|
||||
context.fixtures.put(op.getResponseId(), output);
|
||||
context.snapshots.put(output.getUrl(), output);
|
||||
|
||||
new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(System.getProperty("java.io.tmpdir"), op.getResponseId()+".xml")), output);
|
||||
if (output.getDifferential().hasElement())
|
||||
new NarrativeGenerator("", "http://hl7.org/fhir", TestingUtilities.context()).setPkp(new TestPKP()).generate(output, null);
|
||||
new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(System.getProperty("java.io.tmpdir"), op.getResponseId()+"-d.xml")), output);
|
||||
} else if (opType.getSystem().equals("http://hl7.org/fhir/testscript-operation-codes") && opType.getCode().equals("sortDifferential")) {
|
||||
StructureDefinition source = (StructureDefinition) context.fetchFixture(op.getSourceId());
|
||||
StructureDefinition base = getSD(source.getBaseDefinition());
|
||||
StructureDefinition output = source.copy();
|
||||
ProfileUtilities pu = new ProfileUtilities(TestingUtilities.context(), null, null);
|
||||
pu.setIds(source, false);
|
||||
List<String> errors = new ArrayList<String>();
|
||||
pu.sortDifferential(base, output, output.getUrl(), errors);
|
||||
if (!errors.isEmpty())
|
||||
throw new FHIRException(errors.get(0));
|
||||
context.fixtures.put(op.getResponseId(), output);
|
||||
context.snapshots.put(output.getUrl(), output);
|
||||
|
||||
new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(System.getProperty("java.io.tmpdir"), op.getResponseId()+".xml")), output);
|
||||
|
||||
new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(System.getProperty("java.io.tmpdir"), op.getResponseId()+".xml")), output);
|
||||
|
||||
} else {
|
||||
throw new Error("Unsupported operation: " + opType.getSystem() + " : " + opType.getCode());
|
||||
}
|
||||
} else if (action.hasAssert()) {
|
||||
SetupActionAssertComponent a = action.getAssert();
|
||||
if (a.hasResponse() && a.getResponse().equals(TestScript.AssertionResponseTypes.BAD))
|
||||
Assert.fail(action.getAssert().getLabel()+": "+action.getAssert().getDescription());
|
||||
else {
|
||||
boolean ok = fp.evaluateToBoolean(new StructureDefinition(), new StructureDefinition(), a.getExpression());
|
||||
Assert.assertTrue(a.getLabel()+": "+a.getDescription(), ok);
|
||||
}
|
||||
}
|
||||
} catch (Exception e) {
|
||||
boolean ok = false;
|
||||
for (int j = i+1;i < test.getAction().size(); i++) {
|
||||
TestActionComponent followAction = test.getAction().get(j);
|
||||
if (followAction.hasAssert() && followAction.getAssert().hasResponse() && followAction.getAssert().getResponse().equals(TestScript.AssertionResponseTypes.BAD)) {
|
||||
ok = true;
|
||||
break;
|
||||
}
|
||||
}
|
||||
} catch (Exception e) {
|
||||
lastOpOutcome = AssertionResponseTypes.BAD;
|
||||
}
|
||||
|
||||
} else if (action.hasAssert()) {
|
||||
SetupActionAssertComponent a = action.getAssert();
|
||||
if (a.getResponse() != null) {
|
||||
Assert.assertTrue(a.getLabel()+" (response): "+a.getDescription(), a.getResponse() == lastOpOutcome);
|
||||
}
|
||||
if (a.hasExpression()) {
|
||||
boolean ok = fp.evaluateToBoolean(new StructureDefinition(), new StructureDefinition(), a.getExpression());
|
||||
Assert.assertTrue(a.getLabel()+": "+a.getDescription(), ok);
|
||||
}
|
||||
}
|
||||
}
|
||||
} catch (Exception e) {
|
||||
e.printStackTrace();
|
||||
throw new FHIRException(e);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private void debugSaveResource(Resource r) throws IOException {
|
||||
String dir = System.getProperty("java.io.tmpdir");
|
||||
if (new File("c:\\temp").exists())
|
||||
dir = "c:\\temp";
|
||||
String fn = Utilities.path(dir, r.fhirType()+"-"+r.getId()+".xml");
|
||||
new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(fn), r);
|
||||
}
|
||||
|
||||
private StructureDefinition getSD(String url) throws DefinitionException, FHIRException, IOException {
|
||||
StructureDefinition sd = context.snapshots.get(url);
|
||||
if (sd == null)
|
||||
sd = findContainedProfile(url);
|
||||
if (sd == null)
|
||||
sd = TestingUtilities.context().fetchResource(StructureDefinition.class, url);
|
||||
return sd;
|
||||
}
|
||||
|
||||
private StructureDefinition findContainedProfile(String url) throws DefinitionException, FHIRException, IOException {
|
||||
for (Resource r : context.tests.getContained()) {
|
||||
if (r instanceof StructureDefinition) {
|
||||
StructureDefinition sd = (StructureDefinition) r;
|
||||
if (sd.getUrl().equals(url)) {
|
||||
StructureDefinition p = sd.copy();
|
||||
ProfileUtilities pu = new ProfileUtilities(TestingUtilities.context(), null, null);
|
||||
pu.setIds(p, false);
|
||||
List<String> errors = new ArrayList<String>();
|
||||
pu.sortDifferential(getSD(p.getBaseDefinition()), p, url, errors);
|
||||
if (!errors.isEmpty())
|
||||
throw new FHIRException(errors.get(0));
|
||||
pu.generateSnapshot(getSD(p.getBaseDefinition()), p, p.getUrl(), p.getName());
|
||||
debugSaveResource(p);
|
||||
return p;
|
||||
}
|
||||
}
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
private void resolveFixtures() {
|
||||
if (context.fixtures == null) {
|
||||
context.fixtures = new HashMap<String, Resource>();
|
||||
for (TestScriptFixtureComponent fd : context.tests.getFixture()) {
|
||||
Resource r = TestingUtilities.context().fetchResource(Resource.class, fd.getResource().getReference());
|
||||
context.fixtures.put(fd.getId(), r);
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
}
|
||||
|
|
|
|||
Loading…
Reference in New Issue