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Merge pull request #325 from ItayGoren/converting-medication-request 

Converting medication request
This commit is contained in:
Grahame Grieve 2020-09-01 08:03:55 +10:00 committed by GitHub
parent b459b6e1ec c2427096ca
commit 2a6e148089
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GPG Key ID: 4AEE18F83AFDEB23
6 changed files with 217 additions and 2 deletions
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3
org.hl7.fhir.convertors/src/main/java/org/hl7/fhir/convertors/VersionConvertor_10_40.java
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@ -37,6 +37,7 @@ import org.hl7.fhir.convertors.conv10_40.ImplementationGuide10_40;
import org.hl7.fhir.convertors.conv10_40.List10_40;
import org.hl7.fhir.convertors.conv10_40.Location10_40;
import org.hl7.fhir.convertors.conv10_40.MedicationDispense10_40;
import org.hl7.fhir.convertors.conv10_40.MedicationRequest10_40;
import org.hl7.fhir.convertors.conv10_40.MedicationStatement10_40;
import org.hl7.fhir.convertors.conv10_40.MessageHeader10_40;
import org.hl7.fhir.convertors.conv10_40.NamingSystem10_40;
@ -3239,6 +3240,8 @@ public class VersionConvertor_10_40 {
return MedicationDispense10_40.convertMedicationDispense((org.hl7.fhir.dstu2.model.MedicationDispense) src);
if (src instanceof org.hl7.fhir.dstu2.model.MedicationStatement)
return MedicationStatement10_40.convertMedicationStatement((org.hl7.fhir.dstu2.model.MedicationStatement) src);
if (src instanceof org.hl7.fhir.dstu2.model.MedicationOrder)
return MedicationRequest10_40.convertMedicationRequest((org.hl7.fhir.dstu2.model.MedicationOrder) src);
if (src instanceof org.hl7.fhir.dstu2.model.MessageHeader)
return MessageHeader10_40.convertMessageHeader((org.hl7.fhir.dstu2.model.MessageHeader) src);
if (src instanceof org.hl7.fhir.dstu2.model.NamingSystem)

98
org.hl7.fhir.convertors/src/main/java/org/hl7/fhir/convertors/conv10_40/MedicationRequest10_40.java Normal file
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@ -0,0 +1,98 @@
package org.hl7.fhir.convertors.conv10_40;
import org.hl7.fhir.convertors.VersionConvertor_10_40;
import org.hl7.fhir.dstu2.model.MedicationOrder;
import org.hl7.fhir.dstu3.model.MedicationRequest;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.r4.model.Dosage;
public class MedicationRequest10_40 {
public static org.hl7.fhir.r4.model.MedicationRequest convertMedicationRequest(org.hl7.fhir.dstu2.model.MedicationOrder src) throws FHIRException {
if (src == null)
return null;
org.hl7.fhir.r4.model.MedicationRequest tgt = new org.hl7.fhir.r4.model.MedicationRequest();
VersionConvertor_10_40.copyDomainResource(src, tgt);
tgt.setIntent(org.hl7.fhir.r4.model.MedicationRequest.MedicationRequestIntent.ORDER);
for (org.hl7.fhir.dstu2.model.Identifier identifier : src.getIdentifier()) tgt.addIdentifier(VersionConvertor_10_40.convertIdentifier(identifier));
if (src.hasDateWritten())
tgt.setAuthoredOn(src.getDateWritten());
if (src.hasStatus())
tgt.setStatus(org.hl7.fhir.r4.model.MedicationRequest.MedicationRequestStatus.fromCode(src.getStatus().toCode()));
if (src.hasPatient())
tgt.setSubject(VersionConvertor_10_40.convertReference(src.getPatient()));
if (src.hasPrescriber())
tgt.setRequester(VersionConvertor_10_40.convertReference(src.getPrescriber()));
if (src.hasReasonCodeableConcept())
tgt.addReasonCode(VersionConvertor_10_40.convertCodeableConcept(src.getReasonCodeableConcept()));
if (src.hasReasonReference())
tgt.addReasonReference(VersionConvertor_10_40.convertReference((src.getReasonReference())));
if (src.hasNote())
tgt.addNote(new org.hl7.fhir.r4.model.Annotation(new org.hl7.fhir.r4.model.MarkdownType((src.getNote()))));
if (src.hasMedicationCodeableConcept())
tgt.setMedication(VersionConvertor_10_40.convertCodeableConcept(src.getMedicationCodeableConcept()));
if (src.hasMedicationReference())
tgt.setMedication(VersionConvertor_10_40.convertReference(src.getMedicationReference()));
for (MedicationOrder.MedicationOrderDosageInstructionComponent dosage : src.getDosageInstruction())
tgt.addDosageInstruction(medDosageInstruction(dosage));
if (src.hasDispenseRequest())
tgt.setDispenseRequest(medDispenseRequest(src.getDispenseRequest()));
if (src.hasSubstitution())
tgt.setSubstitution(medSubstitution(src.getSubstitution()));
if (src.hasPriorPrescription())
tgt.setPriorPrescription(VersionConvertor_10_40.convertReference(src.getPriorPrescription()));
return tgt;
}
private static org.hl7.fhir.r4.model.Dosage medDosageInstruction(org.hl7.fhir.dstu2.model.MedicationOrder.MedicationOrderDosageInstructionComponent src) {
if (src == null || src.isEmpty())
return null;
org.hl7.fhir.r4.model.Dosage tgt = new org.hl7.fhir.r4.model.Dosage();
if (src.hasText())
tgt.setText(src.getText());
if (src.hasAdditionalInstructions())
tgt.addAdditionalInstruction(VersionConvertor_10_40.convertCodeableConcept(src.getAdditionalInstructions()));
if (src.hasTiming())
tgt.setTiming(VersionConvertor_10_40.convertTiming(src.getTiming()));
if (src.hasAsNeeded())
tgt.setAsNeeded(VersionConvertor_10_40.convertType(src.getAsNeeded()));
if (src.hasSiteCodeableConcept())
tgt.setSite(VersionConvertor_10_40.convertCodeableConcept(src.getSiteCodeableConcept()));
if (src.hasRoute())
tgt.setRoute(VersionConvertor_10_40.convertCodeableConcept(src.getRoute()));
if (src.hasMethod())
tgt.setMethod(VersionConvertor_10_40.convertCodeableConcept(src.getMethod()));
Dosage.DosageDoseAndRateComponent dose_and_rate = new Dosage.DosageDoseAndRateComponent();
if (src.hasDose())
dose_and_rate.setDose(VersionConvertor_10_40.convertType(src.getDose()));
if (src.hasRate())
dose_and_rate.setDose(VersionConvertor_10_40.convertType(src.getRate()));
tgt.addDoseAndRate(dose_and_rate);
if (src.hasMaxDosePerPeriod())
tgt.setMaxDosePerPeriod(VersionConvertor_10_40.convertRatio(src.getMaxDosePerPeriod()));
return tgt;
}
private static org.hl7.fhir.r4.model.MedicationRequest.MedicationRequestDispenseRequestComponent medDispenseRequest(org.hl7.fhir.dstu2.model.MedicationOrder.MedicationOrderDispenseRequestComponent src) {
if (src == null || src.isEmpty())
return null;
org.hl7.fhir.r4.model.MedicationRequest.MedicationRequestDispenseRequestComponent tgt = new org.hl7.fhir.r4.model.MedicationRequest.MedicationRequestDispenseRequestComponent();
if (src.hasValidityPeriod())
tgt.setValidityPeriod(VersionConvertor_10_40.convertPeriod(src.getValidityPeriod()));
if (src.hasNumberOfRepeatsAllowed())
tgt.setNumberOfRepeatsAllowed(src.getNumberOfRepeatsAllowed());
if (src.hasQuantity())
tgt.setQuantity(VersionConvertor_10_40.convertSimpleQuantity(src.getQuantity()));
if (src.hasExpectedSupplyDuration())
tgt.setExpectedSupplyDuration(VersionConvertor_10_40.convertDuration(src.getExpectedSupplyDuration()));
return tgt;
}
private static org.hl7.fhir.r4.model.MedicationRequest.MedicationRequestSubstitutionComponent medSubstitution(org.hl7.fhir.dstu2.model.MedicationOrder.MedicationOrderSubstitutionComponent src) {
if (src == null || src.isEmpty())
return null;
org.hl7.fhir.r4.model.MedicationRequest.MedicationRequestSubstitutionComponent tgt = new org.hl7.fhir.r4.model.MedicationRequest.MedicationRequestSubstitutionComponent();
if (src.hasReason())
tgt.setReason(VersionConvertor_10_40.convertCodeableConcept(src.getReason()));
return tgt;
}
}

10
org.hl7.fhir.convertors/src/main/java/org/hl7/fhir/convertors/conv30_40/MedicationRequest30_40.java
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@ -43,8 +43,14 @@ public class MedicationRequest30_40 {
tgt.setPriorPrescription(VersionConvertor_30_40.convertReference(src.getPriorPrescription()));
for (org.hl7.fhir.dstu3.model.Reference t : src.getDetectedIssue()) tgt.addDetectedIssue(VersionConvertor_30_40.convertReference(t));
for (org.hl7.fhir.dstu3.model.Reference t : src.getEventHistory()) tgt.addEventHistory(VersionConvertor_30_40.convertReference(t));
if (src.hasRequester() && src.getRequester().hasAgent()) {
tgt.setRequester(VersionConvertor_30_40.convertReference(src.getRequester().getAgent()));
if (src.hasRequester()) {
if (src.getRequester().hasAgent()) {
tgt.setRequester(VersionConvertor_30_40.convertReference(src.getRequester().getAgent()));
}
if (src.getRequester().hasOnBehalfOf()) {
tgt.addExtension("http://hl7.org/fhir/3.0/StructureDefinition/extension-MedicationRequest.requester.onBehalfOf",
VersionConvertor_30_40.convertReference(src.getRequester().getOnBehalfOf()));
}
}
return tgt;
}

31
org.hl7.fhir.convertors/src/test/java/org/hl7/fhir/convertors/conv10_40/MedicationRequest10_40Test.java Normal file
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@ -0,0 +1,31 @@
package org.hl7.fhir.convertors.conv10_40;
import org.hl7.fhir.convertors.VersionConvertorAdvisor40;
import org.hl7.fhir.convertors.VersionConvertor_10_40;
import org.hl7.fhir.convertors.misc.IGR2ConvertorAdvisor;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.DisplayName;
import org.junit.jupiter.api.Test;
import java.io.IOException;
import java.io.InputStream;
public class MedicationRequest10_40Test {
@Test
@DisplayName("Test 10_40 MedicationRequest conversion")
public void testMedicationRequestConversion() throws IOException {
InputStream dstu2_input = this.getClass().getResourceAsStream("/0_medication_request_10.json");
InputStream r4_exepected_input = this.getClass().getResourceAsStream("/0_medication_request_40.json");
org.hl7.fhir.dstu2.model.MedicationOrder dstu2 = (org.hl7.fhir.dstu2.model.MedicationOrder) new org.hl7.fhir.dstu2.formats.JsonParser().parse(dstu2_input);
VersionConvertorAdvisor40 advisor = new IGR2ConvertorAdvisor();
org.hl7.fhir.r4.model.Resource r4_actual = VersionConvertor_10_40.convertResource(dstu2, advisor);
org.hl7.fhir.r4.formats.JsonParser r4_parser = new org.hl7.fhir.r4.formats.JsonParser();
org.hl7.fhir.r4.model.Resource r4_expected = r4_parser.parse(r4_exepected_input);
Assertions.assertTrue(r4_expected.equalsDeep(r4_actual),
"Failed comparing\n" + r4_parser.composeString(r4_actual) + "\nand\n" + r4_parser.composeString(r4_expected));
}
}

37
org.hl7.fhir.convertors/src/test/resources/0_medication_request_10.json Normal file
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@ -0,0 +1,37 @@
{"resourceType": "MedicationOrder",
"dateWritten": "2016-11-13",
"status": "active",
"id": "T5YI1tCzs--JEvCICFbx8zgB",
"identifier": [{"use": "usual",
"system": "urn:oid:1.2.840.114350.1.13.0.1.7.2.798268",
"value": "988736"},
{"use": "usual",
"system": "urn:oid:1.2.840.114350.1.13.0.1.7.3.798268.801",
"value": "988736:2150291843"}],
"patient": {"display": "Jason Argonaut",
"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Patient/Tbt3KuCY0B5PSrJvCu2j-PlK.aiHsu2xUjUM8bWpetXoB"},
"prescriber": {"display": "Historical Provider, MD",
"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Practitioner/T-kmjPGEVPAmnBfmx56HsKgB"},
"medicationReference": {"display": "amitriptyline 10 MG tablet",
"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Medication/T0eKLT7EB2ApMM8HCEURdMAB"},
"dosageInstruction": [{"text": "Take 10 mg by mouth nightly.",
"asNeededBoolean": "False",
"route": {"text": "Oral",
"coding": [{"system": "urn:oid:1.2.840.114350.1.13.0.1.7.4.698288.330",
"code": "15",
"display": "Oral"}]},
"method": {"text": "Take",
"coding": [{"system": "urn:oid:1.2.840.114350.1.13.0.1.7.4.798268.8600",
"code": "11",
"display": "Take"}]},
"timing": {"repeat": {"frequency": 1,
"period": 1.0,
"periodUnits": "d",
"boundsPeriod": {"start": "2016-11-15T00:00:00Z",
"end": "2016-11-23T00:00:00Z"}}},
"doseQuantity": {"value": 10.0,
"unit": "mg",
"code": "mg",
"system": "http://unitsofmeasure.org"}}],
"dispenseRequest": {"validityPeriod": {"start": "2016-11-15T00:00:00Z",
"end": "2016-11-23T00:00:00Z"}}}

40
org.hl7.fhir.convertors/src/test/resources/0_medication_request_40.json Normal file
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@ -0,0 +1,40 @@
{"resourceType": "MedicationRequest",
"id": "T5YI1tCzs--JEvCICFbx8zgB",
"identifier": [{"use": "usual",
"system": "urn:oid:1.2.840.114350.1.13.0.1.7.2.798268",
"value": "988736"},
{"use": "usual",
"system": "urn:oid:1.2.840.114350.1.13.0.1.7.3.798268.801",
"value": "988736:2150291843"}],
"status": "active",
"intent": "order",
"medicationReference": {"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Medication/T0eKLT7EB2ApMM8HCEURdMAB",
"display": "amitriptyline 10 MG tablet"},
"subject": {"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Patient/Tbt3KuCY0B5PSrJvCu2j-PlK.aiHsu2xUjUM8bWpetXoB",
"display": "Jason Argonaut"},
"authoredOn": "2016-11-13T00:00:00",
"requester": {"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Practitioner/T-kmjPGEVPAmnBfmx56HsKgB",
"display": "Historical Provider, MD"},
"dosageInstruction": [{"text": "Take 10 mg by mouth nightly.",
"timing": {"repeat": {"boundsPeriod": {"start": "2016-11-15T00:00:00Z",
"end": "2016-11-23T00:00:00Z"},
"count": 0,
"frequency": 1,
"frequencyMax": 0,
"period": 1.0,
"periodUnit": "d"}},
"asNeededBoolean": "False",
"route": {"coding": [{"system": "urn:oid:1.2.840.114350.1.13.0.1.7.4.698288.330",
"code": "15",
"display": "Oral"}],
"text": "Oral"},
"method": {"coding": [{"system": "urn:oid:1.2.840.114350.1.13.0.1.7.4.798268.8600",
"code": "11",
"display": "Take"}],
"text": "Take"},
"doseAndRate": [{"doseQuantity": {"value": 10.0,
"unit": "mg",
"system": "http://unitsofmeasure.org",
"code": "mg"}}]}],
"dispenseRequest": {"validityPeriod": {"start": "2016-11-15T00:00:00Z",
"end": "2016-11-23T00:00:00Z"}}}