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extend validator to handle contained profiles

This commit is contained in:
Grahame Grieve 2019-05-25 07:23:20 +10:00
parent b6d5aa63c0
commit 2cc62df915
3 changed files with 73 additions and 50 deletions
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86
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/model/DomainResource.java
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@ -447,47 +447,59 @@ Modifier extensions SHALL NOT change the meaning of any elements on Resource or
// added from java-adornments.txt:
public void checkNoModifiers(String noun, String verb) throws FHIRException {
public void checkNoModifiers(String noun, String verb) throws FHIRException {
if (hasModifierExtension()) {
throw new FHIRException("Found unknown Modifier Exceptions on "+noun+" doing "+verb);
}
}
public void addExtension(String url, Type value) {
Extension ex = new Extension();
ex.setUrl(url);
ex.setValue(value);
getExtension().add(ex);
}
public boolean hasExtension(String url) {
for (Extension e : getExtension())
if (url.equals(e.getUrl()))
return true;
return false;
}
public Extension getExtensionByUrl(String theUrl) {
org.apache.commons.lang3.Validate.notBlank(theUrl, "theUrl must not be blank or null");
ArrayList<Extension> retVal = new ArrayList<Extension>();
for (Extension next : getExtension()) {
if (theUrl.equals(next.getUrl())) {
retVal.add(next);
}
}
if (retVal.size() == 0)
return null;
else {
org.apache.commons.lang3.Validate.isTrue(retVal.size() == 1, "Url "+theUrl+" must have only one match");
return retVal.get(0);
}
}
public Resource getContained(String ref) {
if (ref == null)
return null;
}
public void addExtension(String url, Type value) {
Extension ex = new Extension();
ex.setUrl(url);
ex.setValue(value);
getExtension().add(ex);
}
public boolean hasExtension(String url) {
for (Extension e : getExtension())
if (url.equals(e.getUrl()))
return true;
return false;
}
public Extension getExtensionByUrl(String theUrl) {
org.apache.commons.lang3.Validate.notBlank(theUrl, "theUrl must not be blank or null");
ArrayList<Extension> retVal = new ArrayList<Extension>();
for (Extension next : getExtension()) {
if (theUrl.equals(next.getUrl())) {
retVal.add(next);
}
}
if (retVal.size() == 0)
return null;
else {
org.apache.commons.lang3.Validate.isTrue(retVal.size() == 1, "Url "+theUrl+" must have only one match");
return retVal.get(0);
}
}
if (ref.startsWith("#"))
ref = ref.substring(1);
for (Resource r : getContained()) {
if (r.getId().equals(ref))
return r;
}
return null;
}
// end addition

1
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/model/StructureDefinition.java
View File

@ -3885,6 +3885,5 @@ public class StructureDefinition extends MetadataResource {
*/
public static final ca.uhn.fhir.model.api.Include INCLUDE_BASE = new ca.uhn.fhir.model.api.Include("StructureDefinition:base").toLocked();
}

36
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/r5/validation/InstanceValidator.java
View File

@ -392,11 +392,11 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
if (!ok)
errors.add(new ValidationMessage(Source.InstanceValidator, IssueType.UNKNOWN, path, "Profile mismatch on type for "+profile.getProfile()+": the profile constrains "+sd.getType()+" but the element is "+element.fhirType(), IssueSeverity.ERROR));
} else
addProfile(errors, profile.getProfile(), profile.isError(), path, element);
addProfile(errors, profile.getProfile(), profile.isError(), path, element, sd);
}
}
public boolean addProfile(List<ValidationMessage> errors, String profile, boolean error, String path, Element element) {
public boolean addProfile(List<ValidationMessage> errors, String profile, boolean error, String path, Element element, StructureDefinition containingProfile) {
String effectiveProfile = profile;
String version = null;
if (profile.contains("|")) {
@ -404,10 +404,22 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
version = profile.substring(profile.indexOf('|')+1);
}
StructureDefinition sd = null;
if (providedProfiles != null)
sd = providedProfiles.fetch(effectiveProfile);
if (sd == null)
sd = context.fetchResource(StructureDefinition.class, effectiveProfile);
if (profile.startsWith("#")) {
if (!rule(errors, IssueType.INVALID, element.line(), element.col(), path, sd != null, "StructureDefinition reference \"{0}\" is local, but there is not local context", profile)) {
return false;
}
if (containingProfile.hasUserData("container"))
containingProfile = (StructureDefinition) containingProfile.getUserData("container");
sd = (StructureDefinition) containingProfile.getContained(profile);
if (sd != null)
sd.setUserData("container", containingProfile);
} else {
if (providedProfiles != null)
sd = providedProfiles.fetch(effectiveProfile);
if (sd == null)
sd = context.fetchResource(StructureDefinition.class, effectiveProfile);
}
if (warningOrError(error, errors, IssueType.INVALID, element.line(), element.col(), path, sd != null, "StructureDefinition reference \"{0}\" could not be resolved", profile)) {
if (rule(errors, IssueType.STRUCTURE, element.line(), element.col(), path, version==null || (sd.getVersion()!=null && sd.getVersion().equals(version)),
@ -1180,7 +1192,7 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
String p = stack.addToLiteralPath("meta", "profile", ":" + Integer.toString(i));
if (rule(errors, IssueType.INVALID, element.line(), element.col(), p, !Utilities.noString(ref), "StructureDefinition reference invalid")) {
long t = System.nanoTime();
resourceProfiles.addProfile(errors, ref, errorForUnknownProfiles, p, element);
resourceProfiles.addProfile(errors, ref, errorForUnknownProfiles, p, element, null);
i++;
}
}
@ -1859,7 +1871,7 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
b.append(bt);
ok = bt.equals(ft);
if (ok && we!=null && pol.checkValid()) {
doResourceProfile(hostContext, we, pr, errors, stack.push(we, -1, null, null), path, element);
doResourceProfile(hostContext, we, pr, errors, stack.push(we, -1, null, null), path, element, profile);
}
} else
ok = true; // suppress following check
@ -1909,8 +1921,8 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
}
}
private void doResourceProfile(ValidatorHostContext hostContext, Element resource, String profile, List<ValidationMessage> errors, NodeStack stack, String path, Element element) throws FHIRException, IOException {
ResourceProfiles resourceProfiles = addResourceProfile(errors, resource, profile, path, element, stack);
private void doResourceProfile(ValidatorHostContext hostContext, Element resource, String profile, List<ValidationMessage> errors, NodeStack stack, String path, Element element, StructureDefinition containingProfile) throws FHIRException, IOException {
ResourceProfiles resourceProfiles = addResourceProfile(errors, resource, profile, path, element, stack, containingProfile);
if (resourceProfiles.isProcessed()) {
start(hostContext, errors, resource, resource, null, stack);
}
@ -1925,9 +1937,9 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
return resourceProfiles;
}
private ResourceProfiles addResourceProfile(List<ValidationMessage> errors, Element resource, String profile, String path, Element element, NodeStack stack) {
private ResourceProfiles addResourceProfile(List<ValidationMessage> errors, Element resource, String profile, String path, Element element, NodeStack stack, StructureDefinition containingProfile) {
ResourceProfiles resourceProfiles = getResourceProfiles(resource, stack);
resourceProfiles.addProfile(errors, profile, errorForUnknownProfiles, path, element);
resourceProfiles.addProfile(errors, profile, errorForUnknownProfiles, path, element, containingProfile);
return resourceProfiles;
}