Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work
This commit is contained in:
Grahame Grieve
commit
3b925f219d
|
|
@ -4,6 +4,7 @@ import java.util.ArrayList;
|
|||
import java.util.List;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import org.hl7.fhir.convertors.conv30_40.Account30_40;
|
||||
import org.hl7.fhir.convertors.conv30_40.ActivityDefinition30_40;
|
||||
import org.hl7.fhir.convertors.conv30_40.AllergyIntolerance30_40;
|
||||
import org.hl7.fhir.convertors.conv30_40.Appointment30_40;
|
||||
|
|
@ -24,6 +25,7 @@ import org.hl7.fhir.convertors.conv30_40.Composition30_40;
|
|||
import org.hl7.fhir.convertors.conv30_40.ConceptMap30_40;
|
||||
import org.hl7.fhir.convertors.conv30_40.Condition30_40;
|
||||
import org.hl7.fhir.convertors.conv30_40.Consent30_40;
|
||||
import org.hl7.fhir.convertors.conv30_40.Coverage30_40;
|
||||
import org.hl7.fhir.convertors.conv30_40.DataElement30_40;
|
||||
import org.hl7.fhir.convertors.conv30_40.DetectedIssue30_40;
|
||||
import org.hl7.fhir.convertors.conv30_40.DeviceUseStatement30_40;
|
||||
|
|
@ -4931,6 +4933,8 @@ public class VersionConvertor_30_40 {
|
|||
return null;
|
||||
if (src instanceof org.hl7.fhir.dstu3.model.Parameters)
|
||||
return Parameters30_40.convertParameters((org.hl7.fhir.dstu3.model.Parameters) src);
|
||||
if (src instanceof org.hl7.fhir.dstu3.model.Account)
|
||||
return Account30_40.convertAccount((org.hl7.fhir.dstu3.model.Account) src);
|
||||
if (src instanceof org.hl7.fhir.dstu3.model.ActivityDefinition)
|
||||
return ActivityDefinition30_40.convertActivityDefinition((org.hl7.fhir.dstu3.model.ActivityDefinition) src);
|
||||
if (src instanceof org.hl7.fhir.dstu3.model.AllergyIntolerance)
|
||||
|
|
@ -4971,6 +4975,8 @@ public class VersionConvertor_30_40 {
|
|||
return Condition30_40.convertCondition((org.hl7.fhir.dstu3.model.Condition) src);
|
||||
if (src instanceof org.hl7.fhir.dstu3.model.Consent)
|
||||
return Consent30_40.convertConsent((org.hl7.fhir.dstu3.model.Consent) src);
|
||||
if (src instanceof org.hl7.fhir.dstu3.model.Coverage)
|
||||
return Coverage30_40.convertCoverage((org.hl7.fhir.dstu3.model.Coverage) src);
|
||||
if (src instanceof org.hl7.fhir.dstu3.model.DataElement)
|
||||
return DataElement30_40.convertDataElement((org.hl7.fhir.dstu3.model.DataElement) src);
|
||||
if (src instanceof org.hl7.fhir.dstu3.model.DetectedIssue)
|
||||
|
|
@ -5108,6 +5114,8 @@ public class VersionConvertor_30_40 {
|
|||
else
|
||||
return Parameters30_40.convertParameters((org.hl7.fhir.r4.model.Parameters) src);
|
||||
}
|
||||
if (src instanceof org.hl7.fhir.r4.model.Account)
|
||||
return Account30_40.convertAccount((org.hl7.fhir.r4.model.Account) src);
|
||||
if (src instanceof org.hl7.fhir.r4.model.ActivityDefinition)
|
||||
return ActivityDefinition30_40.convertActivityDefinition((org.hl7.fhir.r4.model.ActivityDefinition) src);
|
||||
if (src instanceof org.hl7.fhir.r4.model.AllergyIntolerance)
|
||||
|
|
@ -5148,6 +5156,8 @@ public class VersionConvertor_30_40 {
|
|||
return Condition30_40.convertCondition((org.hl7.fhir.r4.model.Condition) src);
|
||||
if (src instanceof org.hl7.fhir.r4.model.Consent)
|
||||
return Consent30_40.convertConsent((org.hl7.fhir.r4.model.Consent) src);
|
||||
if (src instanceof org.hl7.fhir.r4.model.Coverage)
|
||||
return Coverage30_40.convertCoverage((org.hl7.fhir.r4.model.Coverage) src);
|
||||
if (src instanceof org.hl7.fhir.r4.model.DetectedIssue)
|
||||
return DetectedIssue30_40.convertDetectedIssue((org.hl7.fhir.r4.model.DetectedIssue) src);
|
||||
if (src instanceof org.hl7.fhir.r4.model.DeviceUseStatement)
|
||||
|
|
|
|||
|
|
@ -0,0 +1,191 @@
|
|||
package org.hl7.fhir.convertors.conv30_40;
|
||||
|
||||
|
||||
import org.hl7.fhir.convertors.VersionConvertor_30_40;
|
||||
import org.hl7.fhir.exceptions.FHIRException;
|
||||
|
||||
/*
|
||||
Copyright (c) 2011+, HL7, Inc.
|
||||
All rights reserved.
|
||||
|
||||
Redistribution and use in source and binary forms, with or without modification,
|
||||
are permitted provided that the following conditions are met:
|
||||
|
||||
* Redistributions of source code must retain the above copyright notice, this
|
||||
list of conditions and the following disclaimer.
|
||||
* Redistributions in binary form must reproduce the above copyright notice,
|
||||
this list of conditions and the following disclaimer in the documentation
|
||||
and/or other materials provided with the distribution.
|
||||
* Neither the name of HL7 nor the names of its contributors may be used to
|
||||
endorse or promote products derived from this software without specific
|
||||
prior written permission.
|
||||
|
||||
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
|
||||
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
||||
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
|
||||
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
|
||||
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
|
||||
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
|
||||
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
|
||||
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
|
||||
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
|
||||
POSSIBILITY OF SUCH DAMAGE.
|
||||
|
||||
*/
|
||||
// Generated on Sun, Feb 24, 2019 11:37+1100 for FHIR v4.0.0
|
||||
public class Account30_40 extends VersionConvertor_30_40 {
|
||||
|
||||
public static org.hl7.fhir.r4.model.Account convertAccount(org.hl7.fhir.dstu3.model.Account src) throws FHIRException {
|
||||
if (src == null)
|
||||
return null;
|
||||
org.hl7.fhir.r4.model.Account tgt = new org.hl7.fhir.r4.model.Account();
|
||||
copyDomainResource(src, tgt);
|
||||
for (org.hl7.fhir.dstu3.model.Identifier t : src.getIdentifier()) tgt.addIdentifier(convertIdentifier(t));
|
||||
if (src.hasStatus())
|
||||
tgt.setStatusElement(convertAccountStatus(src.getStatusElement()));
|
||||
if (src.hasType())
|
||||
tgt.setType(convertCodeableConcept(src.getType()));
|
||||
if (src.hasName())
|
||||
tgt.setNameElement(convertString(src.getNameElement()));
|
||||
if (src.hasSubject()) {
|
||||
tgt.addSubject(convertReference(src.getSubject()));
|
||||
}
|
||||
if (src.hasPeriod())
|
||||
tgt.setServicePeriod(convertPeriod(src.getPeriod()));
|
||||
for (org.hl7.fhir.dstu3.model.Account.CoverageComponent t : src.getCoverage()) tgt.addCoverage(convertCoverageComponent(t));
|
||||
if (src.hasOwner())
|
||||
tgt.setOwner(convertReference(src.getOwner()));
|
||||
if (src.hasDescription())
|
||||
tgt.setDescriptionElement(convertString(src.getDescriptionElement()));
|
||||
for (org.hl7.fhir.dstu3.model.Account.GuarantorComponent t : src.getGuarantor()) tgt.addGuarantor(convertGuarantorComponent(t));
|
||||
return tgt;
|
||||
}
|
||||
|
||||
public static org.hl7.fhir.dstu3.model.Account convertAccount(org.hl7.fhir.r4.model.Account src) throws FHIRException {
|
||||
if (src == null)
|
||||
return null;
|
||||
org.hl7.fhir.dstu3.model.Account tgt = new org.hl7.fhir.dstu3.model.Account();
|
||||
copyDomainResource(src, tgt);
|
||||
for (org.hl7.fhir.r4.model.Identifier t : src.getIdentifier()) tgt.addIdentifier(convertIdentifier(t));
|
||||
if (src.hasStatus())
|
||||
tgt.setStatusElement(convertAccountStatus(src.getStatusElement()));
|
||||
if (src.hasType())
|
||||
tgt.setType(convertCodeableConcept(src.getType()));
|
||||
if (src.hasName())
|
||||
tgt.setNameElement(convertString(src.getNameElement()));
|
||||
if (src.getSubject().size() > 0) {
|
||||
tgt.setSubject(convertReference(src.getSubjectFirstRep()));
|
||||
}
|
||||
if (src.hasServicePeriod())
|
||||
tgt.setPeriod(convertPeriod(src.getServicePeriod()));
|
||||
for (org.hl7.fhir.r4.model.Account.CoverageComponent t : src.getCoverage()) tgt.addCoverage(convertCoverageComponent(t));
|
||||
if (src.hasOwner())
|
||||
tgt.setOwner(convertReference(src.getOwner()));
|
||||
if (src.hasDescription())
|
||||
tgt.setDescriptionElement(convertString(src.getDescriptionElement()));
|
||||
for (org.hl7.fhir.r4.model.Account.GuarantorComponent t : src.getGuarantor()) tgt.addGuarantor(convertGuarantorComponent(t));
|
||||
return tgt;
|
||||
}
|
||||
|
||||
static public org.hl7.fhir.r4.model.Enumeration<org.hl7.fhir.r4.model.Account.AccountStatus> convertAccountStatus(org.hl7.fhir.dstu3.model.Enumeration<org.hl7.fhir.dstu3.model.Account.AccountStatus> src) throws FHIRException {
|
||||
if (src == null || src.isEmpty())
|
||||
return null;
|
||||
org.hl7.fhir.r4.model.Enumeration<org.hl7.fhir.r4.model.Account.AccountStatus> tgt = new org.hl7.fhir.r4.model.Enumeration<>(new org.hl7.fhir.r4.model.Account.AccountStatusEnumFactory());
|
||||
VersionConvertor_30_40.copyElement(src, tgt);
|
||||
switch(src.getValue()) {
|
||||
case ACTIVE:
|
||||
tgt.setValue(org.hl7.fhir.r4.model.Account.AccountStatus.ACTIVE);
|
||||
break;
|
||||
case INACTIVE:
|
||||
tgt.setValue(org.hl7.fhir.r4.model.Account.AccountStatus.INACTIVE);
|
||||
break;
|
||||
case ENTEREDINERROR:
|
||||
tgt.setValue(org.hl7.fhir.r4.model.Account.AccountStatus.ENTEREDINERROR);
|
||||
break;
|
||||
default:
|
||||
tgt.setValue(org.hl7.fhir.r4.model.Account.AccountStatus.NULL);
|
||||
break;
|
||||
}
|
||||
return tgt;
|
||||
}
|
||||
|
||||
static public org.hl7.fhir.dstu3.model.Enumeration<org.hl7.fhir.dstu3.model.Account.AccountStatus> convertAccountStatus(org.hl7.fhir.r4.model.Enumeration<org.hl7.fhir.r4.model.Account.AccountStatus> src) throws FHIRException {
|
||||
if (src == null || src.isEmpty())
|
||||
return null;
|
||||
org.hl7.fhir.dstu3.model.Enumeration<org.hl7.fhir.dstu3.model.Account.AccountStatus> tgt = new org.hl7.fhir.dstu3.model.Enumeration<>(new org.hl7.fhir.dstu3.model.Account.AccountStatusEnumFactory());
|
||||
VersionConvertor_30_40.copyElement(src, tgt);
|
||||
switch(src.getValue()) {
|
||||
case ACTIVE:
|
||||
tgt.setValue(org.hl7.fhir.dstu3.model.Account.AccountStatus.ACTIVE);
|
||||
break;
|
||||
case INACTIVE:
|
||||
tgt.setValue(org.hl7.fhir.dstu3.model.Account.AccountStatus.INACTIVE);
|
||||
break;
|
||||
case ENTEREDINERROR:
|
||||
tgt.setValue(org.hl7.fhir.dstu3.model.Account.AccountStatus.ENTEREDINERROR);
|
||||
break;
|
||||
case ONHOLD:
|
||||
tgt.setValue(org.hl7.fhir.dstu3.model.Account.AccountStatus.ACTIVE);
|
||||
break;
|
||||
case UNKNOWN:
|
||||
tgt.setValue(org.hl7.fhir.dstu3.model.Account.AccountStatus.ACTIVE);
|
||||
break;
|
||||
default:
|
||||
tgt.setValue(org.hl7.fhir.dstu3.model.Account.AccountStatus.NULL);
|
||||
break;
|
||||
}
|
||||
return tgt;
|
||||
}
|
||||
|
||||
public static org.hl7.fhir.r4.model.Account.CoverageComponent convertCoverageComponent(org.hl7.fhir.dstu3.model.Account.CoverageComponent src) throws FHIRException {
|
||||
if (src == null)
|
||||
return null;
|
||||
org.hl7.fhir.r4.model.Account.CoverageComponent tgt = new org.hl7.fhir.r4.model.Account.CoverageComponent();
|
||||
copyElement(src, tgt);
|
||||
if (src.hasCoverage())
|
||||
tgt.setCoverage(convertReference(src.getCoverage()));
|
||||
if (src.hasPriority())
|
||||
tgt.setPriorityElement(convertPositiveInt(src.getPriorityElement()));
|
||||
return tgt;
|
||||
}
|
||||
|
||||
public static org.hl7.fhir.dstu3.model.Account.CoverageComponent convertCoverageComponent(org.hl7.fhir.r4.model.Account.CoverageComponent src) throws FHIRException {
|
||||
if (src == null)
|
||||
return null;
|
||||
org.hl7.fhir.dstu3.model.Account.CoverageComponent tgt = new org.hl7.fhir.dstu3.model.Account.CoverageComponent();
|
||||
copyElement(src, tgt);
|
||||
if (src.hasCoverage())
|
||||
tgt.setCoverage(convertReference(src.getCoverage()));
|
||||
if (src.hasPriority())
|
||||
tgt.setPriorityElement(convertPositiveInt(src.getPriorityElement()));
|
||||
return tgt;
|
||||
}
|
||||
|
||||
public static org.hl7.fhir.r4.model.Account.GuarantorComponent convertGuarantorComponent(org.hl7.fhir.dstu3.model.Account.GuarantorComponent src) throws FHIRException {
|
||||
if (src == null)
|
||||
return null;
|
||||
org.hl7.fhir.r4.model.Account.GuarantorComponent tgt = new org.hl7.fhir.r4.model.Account.GuarantorComponent();
|
||||
copyElement(src, tgt);
|
||||
if (src.hasParty())
|
||||
tgt.setParty(convertReference(src.getParty()));
|
||||
if (src.hasOnHold())
|
||||
tgt.setOnHoldElement(convertBoolean(src.getOnHoldElement()));
|
||||
if (src.hasPeriod())
|
||||
tgt.setPeriod(convertPeriod(src.getPeriod()));
|
||||
return tgt;
|
||||
}
|
||||
|
||||
public static org.hl7.fhir.dstu3.model.Account.GuarantorComponent convertGuarantorComponent(org.hl7.fhir.r4.model.Account.GuarantorComponent src) throws FHIRException {
|
||||
if (src == null)
|
||||
return null;
|
||||
org.hl7.fhir.dstu3.model.Account.GuarantorComponent tgt = new org.hl7.fhir.dstu3.model.Account.GuarantorComponent();
|
||||
copyElement(src, tgt);
|
||||
if (src.hasParty())
|
||||
tgt.setParty(convertReference(src.getParty()));
|
||||
if (src.hasOnHold())
|
||||
tgt.setOnHoldElement(convertBoolean(src.getOnHoldElement()));
|
||||
if (src.hasPeriod())
|
||||
tgt.setPeriod(convertPeriod(src.getPeriod()));
|
||||
return tgt;
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,154 @@
|
|||
package org.hl7.fhir.convertors.conv30_40;
|
||||
|
||||
|
||||
import org.hl7.fhir.convertors.VersionConvertor_30_40;
|
||||
import org.hl7.fhir.exceptions.FHIRException;
|
||||
|
||||
/*
|
||||
Copyright (c) 2011+, HL7, Inc.
|
||||
All rights reserved.
|
||||
|
||||
Redistribution and use in source and binary forms, with or without modification,
|
||||
are permitted provided that the following conditions are met:
|
||||
|
||||
* Redistributions of source code must retain the above copyright notice, this
|
||||
list of conditions and the following disclaimer.
|
||||
* Redistributions in binary form must reproduce the above copyright notice,
|
||||
this list of conditions and the following disclaimer in the documentation
|
||||
and/or other materials provided with the distribution.
|
||||
* Neither the name of HL7 nor the names of its contributors may be used to
|
||||
endorse or promote products derived from this software without specific
|
||||
prior written permission.
|
||||
|
||||
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
|
||||
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
||||
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
|
||||
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
|
||||
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
|
||||
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
|
||||
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
|
||||
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
|
||||
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
|
||||
POSSIBILITY OF SUCH DAMAGE.
|
||||
|
||||
*/
|
||||
// Generated on Sun, Feb 24, 2019 11:37+1100 for FHIR v4.0.0
|
||||
public class Coverage30_40 extends VersionConvertor_30_40 {
|
||||
|
||||
public static org.hl7.fhir.dstu3.model.Coverage convertCoverage(org.hl7.fhir.r4.model.Coverage src) throws FHIRException {
|
||||
if (src == null)
|
||||
return null;
|
||||
org.hl7.fhir.dstu3.model.Coverage tgt = new org.hl7.fhir.dstu3.model.Coverage();
|
||||
copyDomainResource(src, tgt);
|
||||
for (org.hl7.fhir.r4.model.Identifier t : src.getIdentifier()) tgt.addIdentifier(convertIdentifier(t));
|
||||
if (src.hasStatus())
|
||||
tgt.setStatusElement(convertCoverageStatus(src.getStatusElement()));
|
||||
if (src.hasType())
|
||||
tgt.setType(convertCodeableConcept(src.getType()));
|
||||
if (src.hasPolicyHolder())
|
||||
tgt.setPolicyHolder(convertReference(src.getPolicyHolder()));
|
||||
if (src.hasSubscriber())
|
||||
tgt.setSubscriber(convertReference(src.getSubscriber()));
|
||||
if (src.hasSubscriberId())
|
||||
tgt.setSubscriberIdElement(convertString(src.getSubscriberIdElement()));
|
||||
if (src.hasBeneficiary())
|
||||
tgt.setBeneficiary(convertReference(src.getBeneficiary()));
|
||||
if (src.hasDependent())
|
||||
tgt.setDependentElement(convertString(src.getDependentElement()));
|
||||
if (src.hasRelationship())
|
||||
tgt.setRelationship(convertCodeableConcept(src.getRelationship()));
|
||||
if (src.hasPeriod())
|
||||
tgt.setPeriod(convertPeriod(src.getPeriod()));
|
||||
for (org.hl7.fhir.r4.model.Reference t : src.getPayor()) tgt.addPayor(convertReference(t));
|
||||
if (src.hasOrder())
|
||||
tgt.setOrderElement(convertPositiveInt(src.getOrderElement()));
|
||||
if (src.hasNetwork())
|
||||
tgt.setNetworkElement(convertString(src.getNetworkElement()));
|
||||
for (org.hl7.fhir.r4.model.Reference t : src.getContract()) tgt.addContract(convertReference(t));
|
||||
return tgt;
|
||||
}
|
||||
|
||||
public static org.hl7.fhir.r4.model.Coverage convertCoverage(org.hl7.fhir.dstu3.model.Coverage src) throws FHIRException {
|
||||
if (src == null)
|
||||
return null;
|
||||
org.hl7.fhir.r4.model.Coverage tgt = new org.hl7.fhir.r4.model.Coverage();
|
||||
copyDomainResource(src, tgt);
|
||||
for (org.hl7.fhir.dstu3.model.Identifier t : src.getIdentifier()) tgt.addIdentifier(convertIdentifier(t));
|
||||
if (src.hasStatus())
|
||||
tgt.setStatusElement(convertCoverageStatus(src.getStatusElement()));
|
||||
if (src.hasType())
|
||||
tgt.setType(convertCodeableConcept(src.getType()));
|
||||
if (src.hasPolicyHolder())
|
||||
tgt.setPolicyHolder(convertReference(src.getPolicyHolder()));
|
||||
if (src.hasSubscriber())
|
||||
tgt.setSubscriber(convertReference(src.getSubscriber()));
|
||||
if (src.hasSubscriberId())
|
||||
tgt.setSubscriberIdElement(convertString(src.getSubscriberIdElement()));
|
||||
if (src.hasBeneficiary())
|
||||
tgt.setBeneficiary(convertReference(src.getBeneficiary()));
|
||||
if (src.hasDependent())
|
||||
tgt.setDependentElement(convertString(src.getDependentElement()));
|
||||
if (src.hasRelationship())
|
||||
tgt.setRelationship(convertCodeableConcept(src.getRelationship()));
|
||||
if (src.hasPeriod())
|
||||
tgt.setPeriod(convertPeriod(src.getPeriod()));
|
||||
for (org.hl7.fhir.dstu3.model.Reference t : src.getPayor()) tgt.addPayor(convertReference(t));
|
||||
if (src.hasOrder())
|
||||
tgt.setOrderElement(convertPositiveInt(src.getOrderElement()));
|
||||
if (src.hasNetwork())
|
||||
tgt.setNetworkElement(convertString(src.getNetworkElement()));
|
||||
for (org.hl7.fhir.dstu3.model.Reference t : src.getContract()) tgt.addContract(convertReference(t));
|
||||
return tgt;
|
||||
}
|
||||
|
||||
static public org.hl7.fhir.dstu3.model.Enumeration<org.hl7.fhir.dstu3.model.Coverage.CoverageStatus> convertCoverageStatus(org.hl7.fhir.r4.model.Enumeration<org.hl7.fhir.r4.model.Coverage.CoverageStatus> src) throws FHIRException {
|
||||
if (src == null || src.isEmpty())
|
||||
return null;
|
||||
org.hl7.fhir.dstu3.model.Enumeration<org.hl7.fhir.dstu3.model.Coverage.CoverageStatus> tgt = new org.hl7.fhir.dstu3.model.Enumeration<>(new org.hl7.fhir.dstu3.model.Coverage.CoverageStatusEnumFactory());
|
||||
VersionConvertor_30_40.copyElement(src, tgt);
|
||||
switch(src.getValue()) {
|
||||
case ACTIVE:
|
||||
tgt.setValue(org.hl7.fhir.dstu3.model.Coverage.CoverageStatus.ACTIVE);
|
||||
break;
|
||||
case CANCELLED:
|
||||
tgt.setValue(org.hl7.fhir.dstu3.model.Coverage.CoverageStatus.CANCELLED);
|
||||
break;
|
||||
case DRAFT:
|
||||
tgt.setValue(org.hl7.fhir.dstu3.model.Coverage.CoverageStatus.DRAFT);
|
||||
break;
|
||||
case ENTEREDINERROR:
|
||||
tgt.setValue(org.hl7.fhir.dstu3.model.Coverage.CoverageStatus.ENTEREDINERROR);
|
||||
break;
|
||||
default:
|
||||
tgt.setValue(org.hl7.fhir.dstu3.model.Coverage.CoverageStatus.NULL);
|
||||
break;
|
||||
}
|
||||
return tgt;
|
||||
}
|
||||
|
||||
static public org.hl7.fhir.r4.model.Enumeration<org.hl7.fhir.r4.model.Coverage.CoverageStatus> convertCoverageStatus(org.hl7.fhir.dstu3.model.Enumeration<org.hl7.fhir.dstu3.model.Coverage.CoverageStatus> src) throws FHIRException {
|
||||
if (src == null || src.isEmpty())
|
||||
return null;
|
||||
org.hl7.fhir.r4.model.Enumeration<org.hl7.fhir.r4.model.Coverage.CoverageStatus> tgt = new org.hl7.fhir.r4.model.Enumeration<>(new org.hl7.fhir.r4.model.Coverage.CoverageStatusEnumFactory());
|
||||
VersionConvertor_30_40.copyElement(src, tgt);
|
||||
switch(src.getValue()) {
|
||||
case ACTIVE:
|
||||
tgt.setValue(org.hl7.fhir.r4.model.Coverage.CoverageStatus.ACTIVE);
|
||||
break;
|
||||
case CANCELLED:
|
||||
tgt.setValue(org.hl7.fhir.r4.model.Coverage.CoverageStatus.CANCELLED);
|
||||
break;
|
||||
case DRAFT:
|
||||
tgt.setValue(org.hl7.fhir.r4.model.Coverage.CoverageStatus.DRAFT);
|
||||
break;
|
||||
case ENTEREDINERROR:
|
||||
tgt.setValue(org.hl7.fhir.r4.model.Coverage.CoverageStatus.ENTEREDINERROR);
|
||||
break;
|
||||
default:
|
||||
tgt.setValue(org.hl7.fhir.r4.model.Coverage.CoverageStatus.NULL);
|
||||
break;
|
||||
}
|
||||
return tgt;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -43,6 +43,9 @@ public class MedicationRequest30_40 {
|
|||
tgt.setPriorPrescription(VersionConvertor_30_40.convertReference(src.getPriorPrescription()));
|
||||
for (org.hl7.fhir.dstu3.model.Reference t : src.getDetectedIssue()) tgt.addDetectedIssue(VersionConvertor_30_40.convertReference(t));
|
||||
for (org.hl7.fhir.dstu3.model.Reference t : src.getEventHistory()) tgt.addEventHistory(VersionConvertor_30_40.convertReference(t));
|
||||
if (src.hasRequester() && src.getRequester().hasAgent()) {
|
||||
tgt.setRequester(VersionConvertor_30_40.convertReference(src.getRequester().getAgent()));
|
||||
}
|
||||
return tgt;
|
||||
}
|
||||
|
||||
|
|
@ -84,6 +87,9 @@ public class MedicationRequest30_40 {
|
|||
tgt.setPriorPrescription(VersionConvertor_30_40.convertReference(src.getPriorPrescription()));
|
||||
for (org.hl7.fhir.r4.model.Reference t : src.getDetectedIssue()) tgt.addDetectedIssue(VersionConvertor_30_40.convertReference(t));
|
||||
for (org.hl7.fhir.r4.model.Reference t : src.getEventHistory()) tgt.addEventHistory(VersionConvertor_30_40.convertReference(t));
|
||||
if (src.hasRequester()) {
|
||||
tgt.getRequester().setAgent(VersionConvertor_30_40.convertReference(src.getRequester()));
|
||||
}
|
||||
return tgt;
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -40,7 +40,7 @@ public class RelatedPerson30_40 {
|
|||
tgt.setGenderElement(VersionConvertor_30_40.convertAdministrativeGender(src.getGenderElement()));
|
||||
}
|
||||
if (src.hasBirthDate()) {
|
||||
tgt.setBirthDate(tgt.getBirthDate());
|
||||
tgt.setBirthDate(src.getBirthDate());
|
||||
}
|
||||
for (org.hl7.fhir.r4.model.Address t : src.getAddress()) {
|
||||
tgt.addAddress(VersionConvertor_30_40.convertAddress(t));
|
||||
|
|
@ -84,7 +84,7 @@ public class RelatedPerson30_40 {
|
|||
tgt.setGenderElement(VersionConvertor_30_40.convertAdministrativeGender(src.getGenderElement()));
|
||||
}
|
||||
if (src.hasBirthDate()) {
|
||||
tgt.setBirthDate(tgt.getBirthDate());
|
||||
tgt.setBirthDate(src.getBirthDate());
|
||||
}
|
||||
for (org.hl7.fhir.dstu3.model.Address t : src.getAddress()) {
|
||||
tgt.addAddress(VersionConvertor_30_40.convertAddress(t));
|
||||
|
|
|
|||
|
|
@ -183,7 +183,7 @@ public class JsonParser extends ParserBase {
|
|||
}
|
||||
|
||||
public void parseChildItem(String path, JsonObject object, Element context, Set<String> processed, Property property) {
|
||||
if (property.isChoice()) {
|
||||
if (property.isChoice() || property.getDefinition().getPath().endsWith("data[x]")) {
|
||||
for (TypeRefComponent type : property.getDefinition().getType()) {
|
||||
String eName = property.getName().substring(0, property.getName().length()-3) + Utilities.capitalize(type.getWorkingCode());
|
||||
if (!isPrimitive(type.getWorkingCode()) && object.has(eName)) {
|
||||
|
|
|
|||
|
|
@ -184,7 +184,7 @@ public class JsonParser extends ParserBase {
|
|||
}
|
||||
|
||||
public void parseChildItem(String path, JsonObject object, Element context, Set<String> processed, Property property) {
|
||||
if (property.isChoice()) {
|
||||
if (property.isChoice() || property.getDefinition().getPath().endsWith("data[x]")) {
|
||||
for (TypeRefComponent type : property.getDefinition().getType()) {
|
||||
String eName = property.getName().substring(0, property.getName().length()-3) + Utilities.capitalize(type.getWorkingCode());
|
||||
if (!isPrimitive(type.getWorkingCode()) && object.has(eName)) {
|
||||
|
|
|
|||
|
|
@ -206,7 +206,7 @@ public class Property {
|
|||
if (definition.getType().size() > 0)
|
||||
return definition.getType().size() == 1 && ("Resource".equals(definition.getType().get(0).getCode()) || "DomainResource".equals(definition.getType().get(0).getCode()));
|
||||
else
|
||||
return !definition.getPath().contains(".") && (structure.getKind() == StructureDefinitionKind.RESOURCE || structure.getKind() == StructureDefinitionKind.LOGICAL);
|
||||
return !definition.getPath().contains(".") && (structure.getKind() == StructureDefinitionKind.RESOURCE);
|
||||
}
|
||||
|
||||
public boolean isList() {
|
||||
|
|
|
|||
|
|
@ -210,6 +210,10 @@ public class XmlParser extends ParserBase {
|
|||
return "h:";
|
||||
if (ns.equals("urn:hl7-org:v3"))
|
||||
return "v3:";
|
||||
if (ns.equals("urn:hl7-org:sdtc"))
|
||||
return "sdtc:";
|
||||
if (ns.equals("urn:ihe:pharm"))
|
||||
return "pharm:";
|
||||
return "?:";
|
||||
}
|
||||
|
||||
|
|
@ -538,9 +542,29 @@ public class XmlParser extends ParserBase {
|
|||
xml.setDefaultNamespace(e.getProperty().getXmlNamespace());
|
||||
if (hasTypeAttr(e))
|
||||
xml.namespace("http://www.w3.org/2001/XMLSchema-instance", "xsi");
|
||||
addNamespaces(xml, e);
|
||||
composeElement(xml, e, e.getType(), true);
|
||||
xml.end();
|
||||
}
|
||||
|
||||
private void addNamespaces(IXMLWriter xml, Element e) throws IOException {
|
||||
String ns = e.getProperty().getXmlNamespace();
|
||||
if (ns!=null && !xml.getDefaultNamespace().equals(ns)){
|
||||
if (!xml.namespaceDefined(ns)) {
|
||||
String prefix = pathPrefix(ns);
|
||||
if (prefix.endsWith(":")) {
|
||||
prefix = prefix.substring(0, prefix.length()-1);
|
||||
}
|
||||
if ("?".equals(prefix)) {
|
||||
xml.namespace(ns);
|
||||
} else {
|
||||
xml.namespace(ns, prefix);
|
||||
}
|
||||
}
|
||||
}
|
||||
for (Element c : e.getChildren()) {
|
||||
addNamespaces(xml, c);
|
||||
}
|
||||
}
|
||||
|
||||
private boolean hasTypeAttr(Element e) {
|
||||
|
|
@ -584,9 +608,9 @@ public class XmlParser extends ParserBase {
|
|||
if (isText(element.getProperty())) {
|
||||
if (linkResolver != null)
|
||||
xml.link(linkResolver.resolveProperty(element.getProperty()));
|
||||
xml.enter(elementName);
|
||||
xml.enter(element.getProperty().getXmlNamespace(),elementName);
|
||||
xml.text(element.getValue());
|
||||
xml.exit(elementName);
|
||||
xml.exit(element.getProperty().getXmlNamespace(),elementName);
|
||||
} else if (!element.hasChildren() && !element.hasValue()) {
|
||||
if (element.getExplicitType() != null)
|
||||
xml.attribute("xsi:type", element.getExplicitType());
|
||||
|
|
@ -595,7 +619,7 @@ public class XmlParser extends ParserBase {
|
|||
if (element.getType().equals("xhtml")) {
|
||||
String rawXhtml = element.getValue();
|
||||
if (isCdaText(element.getProperty())) {
|
||||
new CDANarrativeFormat().convert(xml, element.getXhtml());
|
||||
new CDANarrativeFormat().convert(xml, new XhtmlParser().parseFragment(rawXhtml));
|
||||
} else {
|
||||
xml.escapedText(rawXhtml);
|
||||
xml.anchor("end-xhtml");
|
||||
|
|
@ -614,10 +638,10 @@ public class XmlParser extends ParserBase {
|
|||
if (linkResolver != null)
|
||||
xml.link(linkResolver.resolveProperty(element.getProperty()));
|
||||
if (element.hasChildren()) {
|
||||
xml.enter(elementName);
|
||||
for (Element child : element.getChildren())
|
||||
xml.enter(element.getProperty().getXmlNamespace(), elementName);
|
||||
for (Element child : element.getChildren())
|
||||
composeElement(xml, child, child.getName(), false);
|
||||
xml.exit(elementName);
|
||||
xml.exit(element.getProperty().getXmlNamespace(),elementName);
|
||||
} else
|
||||
xml.element(elementName);
|
||||
}
|
||||
|
|
@ -630,16 +654,16 @@ public class XmlParser extends ParserBase {
|
|||
String av = child.getValue();
|
||||
if (ToolingExtensions.hasExtension(child.getProperty().getDefinition(), "http://www.healthintersections.com.au/fhir/StructureDefinition/elementdefinition-dateformat"))
|
||||
av = convertForDateFormatToExternal(ToolingExtensions.readStringExtension(child.getProperty().getDefinition(), "http://www.healthintersections.com.au/fhir/StructureDefinition/elementdefinition-dateformat"), av);
|
||||
xml.attribute(child.getName(), av);
|
||||
}
|
||||
xml.attribute(child.getProperty().getXmlNamespace(),child.getProperty().getXmlName(), av);
|
||||
}
|
||||
}
|
||||
if (linkResolver != null)
|
||||
xml.link(linkResolver.resolveProperty(element.getProperty()));
|
||||
xml.enter(elementName);
|
||||
xml.enter(element.getProperty().getXmlNamespace(),elementName);
|
||||
if (!root && element.getSpecial() != null) {
|
||||
if (linkResolver != null)
|
||||
xml.link(linkResolver.resolveProperty(element.getProperty()));
|
||||
xml.enter(element.getType());
|
||||
xml.enter(element.getProperty().getXmlNamespace(),element.getType());
|
||||
}
|
||||
for (Element child : element.getChildren()) {
|
||||
if (isText(child.getProperty())) {
|
||||
|
|
@ -650,8 +674,8 @@ public class XmlParser extends ParserBase {
|
|||
composeElement(xml, child, child.getName(), false);
|
||||
}
|
||||
if (!root && element.getSpecial() != null)
|
||||
xml.exit(element.getType());
|
||||
xml.exit(elementName);
|
||||
xml.exit(element.getProperty().getXmlNamespace(),element.getType());
|
||||
xml.exit(element.getProperty().getXmlNamespace(),elementName);
|
||||
}
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -1,11 +1,14 @@
|
|||
package org.hl7.fhir.r5.test;
|
||||
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.ByteArrayOutputStream;
|
||||
import java.io.IOException;
|
||||
|
||||
import org.hl7.fhir.r5.context.SimpleWorkerContext;
|
||||
import org.hl7.fhir.r5.elementmodel.Element;
|
||||
import org.hl7.fhir.r5.elementmodel.Manager;
|
||||
import org.hl7.fhir.r5.elementmodel.Manager.FhirFormat;
|
||||
import org.hl7.fhir.r5.formats.IParser.OutputStyle;
|
||||
import org.hl7.fhir.r5.model.StructureDefinition;
|
||||
import org.hl7.fhir.r5.test.utils.TestingUtilities;
|
||||
import org.hl7.fhir.r5.utils.FHIRPathEngine;
|
||||
|
|
@ -13,22 +16,33 @@ import org.hl7.fhir.utilities.cache.FilesystemPackageCacheManager;
|
|||
import org.hl7.fhir.utilities.cache.ToolsVersion;
|
||||
import org.junit.jupiter.api.Assertions;
|
||||
import org.junit.jupiter.api.BeforeAll;
|
||||
import org.junit.jupiter.api.Disabled;
|
||||
import org.junit.jupiter.api.Test;
|
||||
|
||||
public class CDARoundTripTests {
|
||||
|
||||
// private SimpleWorkerContext context;
|
||||
// old-test private FHIRPathEngine fp;
|
||||
private static SimpleWorkerContext context;
|
||||
private static FHIRPathEngine fp;
|
||||
|
||||
@BeforeAll
|
||||
public static void setUp() throws Exception {
|
||||
// old-test context = new SimpleWorkerContext();
|
||||
// old-test PackageCacheManager pcm = new PackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
|
||||
// old-test context.loadFromPackage(pcm.loadPackage("hl7.fhir.core", "dev"), null, "StructureDefinition");
|
||||
// old-test context.loadFromPackage(pcm.loadPackage("hl7.fhir.cda", "dev"), null, "StructureDefinition");
|
||||
// old-test fp = new FHIRPathEngine(context);
|
||||
}
|
||||
@BeforeAll
|
||||
public static void setUp() throws Exception {
|
||||
FilesystemPackageCacheManager pcm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
|
||||
context = SimpleWorkerContext.fromPackage(pcm.loadPackage("hl7.fhir.r4.core", "4.0.1"));
|
||||
fp = new FHIRPathEngine(context);
|
||||
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "any.xml"), "any.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "ii.xml"), "ii.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "cd.xml"), "cd.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "ce.xml"), "ce.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "ed.xml"), "ed.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "st.xml"), "st.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "cda.xml"), "cda.xml", null);
|
||||
for (StructureDefinition sd : context.getStructures()) {
|
||||
if (!sd.hasSnapshot()) {
|
||||
System.out.println("generate snapshot for " + sd.getUrl());
|
||||
context.generateSnapshot(sd, true);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// old-test
|
||||
// @Test
|
||||
|
|
@ -172,29 +186,57 @@ public class CDARoundTripTests {
|
|||
// FhirFormat.TURTLE, OutputStyle.PRETTY, null);
|
||||
// }
|
||||
|
||||
|
||||
@Test
|
||||
public void testSimple() throws IOException {
|
||||
FilesystemPackageCacheManager pcm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
|
||||
SimpleWorkerContext context = SimpleWorkerContext.fromPackage(pcm.loadPackage("hl7.fhir.r4.core", "4.0.1"));
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "any.xml"), "any.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "ii.xml"), "ii.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "cd.xml"), "cd.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "ce.xml"), "ce.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "ed.xml"), "ed.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "st.xml"), "st.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "cda.xml"), "cda.xml", null);
|
||||
for (StructureDefinition sd : context.getStructures()) {
|
||||
if (!sd.hasSnapshot()) {
|
||||
System.out.println("generate snapshot for " + sd.getUrl());
|
||||
context.generateSnapshot(sd, true);
|
||||
}
|
||||
}
|
||||
Element cda = Manager.parse(context, TestingUtilities.loadTestResourceStream("validator", "cda", "example.xml"), FhirFormat.XML);
|
||||
FHIRPathEngine fp = new FHIRPathEngine(context);
|
||||
Assertions.assertEquals("2.16.840.1.113883.3.27.1776", fp.evaluateToString(null, cda, cda, cda, fp.parse("ClinicalDocument.templateId.root")));
|
||||
Assertions.assertEquals("SoEN", fp.evaluateToString(null, cda, cda, cda, fp.parse("ClinicalDocument.code.displayName")));
|
||||
Assertions.assertEquals("SoEN2", fp.evaluateToString(null, cda, cda, cda, fp.parse("ClinicalDocument.code.sdtcDisplayName")));
|
||||
public void assertsExample(Element cdaExample) {
|
||||
Assertions.assertEquals("2.16.840.1.113883.3.27.1776", fp.evaluateToString(null, cdaExample, cdaExample, cdaExample, fp.parse("ClinicalDocument.templateId.root")));
|
||||
Assertions.assertEquals("SoEN", fp.evaluateToString(null, cdaExample, cdaExample, cdaExample, fp.parse("ClinicalDocument.code.displayName")));
|
||||
Assertions.assertEquals("SoEN2", fp.evaluateToString(null, cdaExample, cdaExample, cdaExample, fp.parse("ClinicalDocument.code.sdtcDisplayName")));
|
||||
Assertions.assertEquals("c266", fp.evaluateToString(null, cdaExample, cdaExample, cdaExample, fp.parse("ClinicalDocument.id.extension")));
|
||||
Assertions.assertEquals("2.16.840.1.113883.19.4", fp.evaluateToString(null, cdaExample, cdaExample, cdaExample, fp.parse("ClinicalDocument.id.root")));
|
||||
Assertions.assertEquals("X-34133-9", fp.evaluateToString(null, cdaExample, cdaExample, cdaExample, fp.parse("ClinicalDocument.code.code")));
|
||||
Assertions.assertEquals("2.16.840.1.113883.6.1", fp.evaluateToString(null, cdaExample, cdaExample, cdaExample, fp.parse("ClinicalDocument.code.codeSystem")));
|
||||
Assertions.assertEquals("LOINC", fp.evaluateToString(null, cdaExample, cdaExample, cdaExample, fp.parse("ClinicalDocument.code.codeSystemName")));
|
||||
Assertions.assertEquals("Episode Note", fp.evaluateToString(null, cdaExample, cdaExample, cdaExample, fp.parse("ClinicalDocument.title.dataString")));
|
||||
}
|
||||
|
||||
@Test
|
||||
/**
|
||||
* Deserializes a simplified CDA example into the logical model and checks that
|
||||
* xml deserialization/serialization
|
||||
*
|
||||
* @throws IOException
|
||||
*/
|
||||
public void testClinicalDocumentXmlParser() throws IOException {
|
||||
Element cda = Manager.parse(context, TestingUtilities.loadTestResourceStream("validator", "cda", "example.xml"),
|
||||
FhirFormat.XML);
|
||||
|
||||
assertsExample(cda);
|
||||
|
||||
ByteArrayOutputStream baosXml = new ByteArrayOutputStream();
|
||||
Manager.compose(context, cda, baosXml, FhirFormat.XML, OutputStyle.PRETTY, null);
|
||||
Element cdaXmlRoundtrip = Manager.parse(context, new ByteArrayInputStream(baosXml.toString().getBytes()), FhirFormat.XML);
|
||||
assertsExample(cdaXmlRoundtrip);
|
||||
}
|
||||
|
||||
@Test
|
||||
/**
|
||||
* Deserializes a simplified CDA example into the logical model and checks that
|
||||
* json deserialization/serialization works
|
||||
*
|
||||
* @throws IOException
|
||||
*/
|
||||
public void testClinicalDocumentJsonParser() throws IOException {
|
||||
Element cda = Manager.parse(context, TestingUtilities.loadTestResourceStream("validator", "cda", "example.xml"),
|
||||
FhirFormat.XML);
|
||||
|
||||
assertsExample(cda);
|
||||
|
||||
ByteArrayOutputStream baosJson = new ByteArrayOutputStream();
|
||||
Manager.compose(context, cda, baosJson, FhirFormat.JSON, OutputStyle.PRETTY, null);
|
||||
Element cdaJsonRoundtrip = Manager.parse(context, new ByteArrayInputStream(baosJson.toString().getBytes()),
|
||||
FhirFormat.JSON);
|
||||
|
||||
assertsExample(cdaJsonRoundtrip);
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -1,41 +1,28 @@
|
|||
package org.hl7.fhir.r5.test;
|
||||
|
||||
import static org.junit.Assert.assertEquals;
|
||||
import static org.junit.Assert.assertTrue;
|
||||
|
||||
import java.io.ByteArrayInputStream;
|
||||
import java.io.ByteArrayOutputStream;
|
||||
import java.io.FileInputStream;
|
||||
import java.io.FileNotFoundException;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
import java.util.stream.Stream;
|
||||
|
||||
import javax.xml.parsers.ParserConfigurationException;
|
||||
|
||||
import org.hl7.fhir.exceptions.FHIRException;
|
||||
import org.hl7.fhir.r5.context.SimpleWorkerContext;
|
||||
import org.hl7.fhir.r5.elementmodel.Manager;
|
||||
import org.hl7.fhir.r5.elementmodel.Manager.FhirFormat;
|
||||
import org.hl7.fhir.r5.formats.IParser.OutputStyle;
|
||||
import org.hl7.fhir.r5.formats.JsonParser;
|
||||
import org.hl7.fhir.r5.model.Base;
|
||||
import org.hl7.fhir.r5.model.Coding;
|
||||
import org.hl7.fhir.r5.formats.IParser;
|
||||
import org.hl7.fhir.r5.model.Resource;
|
||||
import org.hl7.fhir.r5.model.ResourceFactory;
|
||||
import org.hl7.fhir.r5.model.StructureDefinition;
|
||||
import org.hl7.fhir.r5.model.StructureDefinition.StructureDefinitionKind;
|
||||
import org.hl7.fhir.r5.model.StructureMap;
|
||||
import org.hl7.fhir.r5.terminologies.ConceptMapEngine;
|
||||
import org.hl7.fhir.r5.test.utils.TestingUtilities;
|
||||
import org.hl7.fhir.r5.utils.StructureMapUtilities;
|
||||
import org.hl7.fhir.r5.utils.StructureMapUtilities.ITransformerServices;
|
||||
import org.hl7.fhir.utilities.TextFile;
|
||||
import org.hl7.fhir.utilities.Utilities;
|
||||
import org.hl7.fhir.utilities.cache.FilesystemPackageCacheManager;
|
||||
import org.hl7.fhir.utilities.cache.ToolsVersion;
|
||||
import org.hl7.fhir.utilities.xml.XMLUtil;
|
||||
import org.hl7.fhir.validation.ValidationEngine;
|
||||
import org.hl7.fhir.validation.instance.InstanceValidatorFactory;
|
||||
import org.junit.jupiter.api.BeforeAll;
|
||||
import org.junit.jupiter.params.ParameterizedTest;
|
||||
|
|
@ -45,12 +32,13 @@ import org.w3c.dom.Document;
|
|||
import org.w3c.dom.Element;
|
||||
import org.xml.sax.SAXException;
|
||||
|
||||
public class FHIRMappingLanguageTests implements ITransformerServices {
|
||||
public class FHIRMappingLanguageTests {
|
||||
|
||||
private List<Resource> outputs = new ArrayList<Resource>();
|
||||
|
||||
static private ValidationEngine validationEngine;
|
||||
|
||||
static private SimpleWorkerContext context;
|
||||
static private JsonParser jsonParser;
|
||||
|
||||
public static Stream<Arguments> data()
|
||||
throws FileNotFoundException, IOException, ParserConfigurationException, SAXException {
|
||||
|
|
@ -67,91 +55,63 @@ public class FHIRMappingLanguageTests implements ITransformerServices {
|
|||
|
||||
@BeforeAll
|
||||
public static void setUp() throws Exception {
|
||||
FilesystemPackageCacheManager pcm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
|
||||
context = SimpleWorkerContext.fromPackage(pcm.loadPackage("hl7.fhir.r5.core", "current"));
|
||||
validationEngine = new ValidationEngine("hl7.fhir.r4.core#4.0.1");
|
||||
context = validationEngine.getContext();
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "any.xml"), "any.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "ii.xml"), "ii.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "cd.xml"), "cd.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "ce.xml"), "ce.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "ed.xml"), "ed.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "st.xml"), "st.xml", null);
|
||||
context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "cda.xml"), "cda.xml", null);
|
||||
for (StructureDefinition sd : context.getStructures()) {
|
||||
if (!sd.hasSnapshot()) {
|
||||
System.out.println("generate snapshot for " + sd.getUrl());
|
||||
context.generateSnapshot(sd, true);
|
||||
}
|
||||
}
|
||||
if (context.getValidatorFactory() == null) {
|
||||
context.setValidatorFactory(new InstanceValidatorFactory());
|
||||
}
|
||||
jsonParser = new JsonParser();
|
||||
jsonParser.setOutputStyle(OutputStyle.PRETTY);
|
||||
}
|
||||
|
||||
@ParameterizedTest(name = "{index}: {0}")
|
||||
@MethodSource("data")
|
||||
public void test(String name, String source, String map, String output) throws Exception {
|
||||
|
||||
InputStream fileSource = TestingUtilities.loadTestResourceStream("r5", "fml", source);
|
||||
InputStream fileMap = TestingUtilities.loadTestResourceStream("r5", "fml", map);
|
||||
byte[] byteSource = TestingUtilities.loadTestResourceBytes("r5", "fml", source);
|
||||
String stringMap = TestingUtilities.loadTestResource("r5", "fml", map);
|
||||
String outputJson = TestingUtilities.loadTestResource("r5", "fml", output);
|
||||
String fileOutputRes = TestingUtilities.tempFile("fml", output) + ".out";
|
||||
|
||||
String fileOutputResOrig = TestingUtilities.tempFile("fml", output) + ".orig.out";
|
||||
ByteArrayOutputStream s = null;
|
||||
outputs.clear();
|
||||
|
||||
boolean ok = false;
|
||||
String msg = null;
|
||||
Resource resource = null;
|
||||
try {
|
||||
StructureMapUtilities scu = new StructureMapUtilities(context, this);
|
||||
org.hl7.fhir.r5.elementmodel.Element src = Manager.parse(context,
|
||||
new ByteArrayInputStream(TextFile.streamToBytes(fileSource)), FhirFormat.JSON);
|
||||
StructureMap structureMap = scu.parse(TextFile.streamToString(fileMap), name);
|
||||
String typeName = scu.getTargetType(structureMap).getType();
|
||||
resource = ResourceFactory.createResource(typeName);
|
||||
scu.transform(null, src, structureMap, resource);
|
||||
ok = true;
|
||||
StructureMap r = new org.hl7.fhir.r5.utils.StructureMapUtilities(context).parse(stringMap, map);
|
||||
context.cacheResource(r);
|
||||
org.hl7.fhir.r5.elementmodel.Element element = validationEngine.transform(byteSource, FhirFormat.JSON, r.getUrl());
|
||||
s = new ByteArrayOutputStream();
|
||||
if (output.endsWith(".json"))
|
||||
new org.hl7.fhir.r5.elementmodel.JsonParser(context).compose(element, s, IParser.OutputStyle.PRETTY, null);
|
||||
else
|
||||
new org.hl7.fhir.r5.elementmodel.XmlParser(context).compose(element, s, IParser.OutputStyle.PRETTY, null);
|
||||
context.dropResource(r);
|
||||
} catch (Exception e) {
|
||||
ok = false;
|
||||
msg = e.getMessage();
|
||||
assertTrue(e.getMessage(), false);
|
||||
}
|
||||
if (ok) {
|
||||
ByteArrayOutputStream boas = new ByteArrayOutputStream();
|
||||
jsonParser.compose(boas, resource);
|
||||
String result = boas.toString();
|
||||
log(result);
|
||||
TextFile.bytesToFile(boas.toByteArray(), fileOutputRes);
|
||||
msg = TestingUtilities.checkJsonSrcIsSame(result, outputJson);
|
||||
assertTrue(msg, Utilities.noString(msg));
|
||||
} else
|
||||
assertEquals("Error, but proper output was expected (" + msg + ")", "$error", output);
|
||||
}
|
||||
|
||||
@Override
|
||||
public void log(String message) {
|
||||
System.out.println(message);
|
||||
}
|
||||
|
||||
@Override
|
||||
public Base createType(Object appInfo, String name) throws FHIRException {
|
||||
StructureDefinition sd = context.fetchResource(StructureDefinition.class, name);
|
||||
if (sd != null && sd.getKind() == StructureDefinitionKind.LOGICAL) {
|
||||
return Manager.build(context, sd);
|
||||
if (output.endsWith("json")) {
|
||||
msg = TestingUtilities.checkJsonSrcIsSame(s.toString(), outputJson);
|
||||
} else {
|
||||
if (name.startsWith("http://hl7.org/fhir/StructureDefinition/"))
|
||||
name = name.substring("http://hl7.org/fhir/StructureDefinition/".length());
|
||||
return ResourceFactory.createResourceOrType(name);
|
||||
TextFile.bytesToFile(s.toByteArray(), fileOutputRes);
|
||||
TextFile.bytesToFile(outputJson.getBytes(), fileOutputResOrig);
|
||||
msg = TestingUtilities.checkXMLIsSame(new FileInputStream(fileOutputRes), new FileInputStream(fileOutputResOrig));
|
||||
}
|
||||
if (!Utilities.noString(msg)) {
|
||||
System.out.print(s.toString());
|
||||
}
|
||||
assertTrue(msg, Utilities.noString(msg));
|
||||
}
|
||||
|
||||
@Override
|
||||
public Base createResource(Object appInfo, Base res, boolean atRootofTransform) {
|
||||
if (atRootofTransform)
|
||||
outputs.add((Resource) res);
|
||||
return res;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Coding translate(Object appInfo, Coding source, String conceptMapUrl) throws FHIRException {
|
||||
ConceptMapEngine cme = new ConceptMapEngine(context);
|
||||
return cme.translate(source, conceptMapUrl);
|
||||
}
|
||||
|
||||
@Override
|
||||
public Base resolveReference(Object appContext, String url) throws FHIRException {
|
||||
throw new FHIRException("resolveReference is not supported yet");
|
||||
}
|
||||
|
||||
@Override
|
||||
public List<Base> performSearch(Object appContext, String url) throws FHIRException {
|
||||
throw new FHIRException("performSearch is not supported yet");
|
||||
}
|
||||
}
|
||||
Loading…
Reference in New Issue