Merge pull request #141 from hapifhir/validator_cleaning
Validator cleaning
This commit is contained in:
commit
41c4f5f299
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@ -88,7 +88,7 @@
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<archive>
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<archive>
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<manifest>
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<manifest>
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<addClasspath>true</addClasspath>
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<addClasspath>true</addClasspath>
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<mainClass>org.hl7.fhir.r5.validation.Validator</mainClass>
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<mainClass>org.hl7.fhir.validation.Validator</mainClass>
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</manifest>
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</manifest>
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</archive>
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</archive>
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</configuration>
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</configuration>
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@ -1,4 +1,4 @@
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package org.hl7.fhir.r5.validation;
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package org.hl7.fhir.validation;
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/*-
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/*-
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* #%L
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* #%L
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@ -1,4 +1,4 @@
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package org.hl7.fhir.r5.validation;
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package org.hl7.fhir.validation;
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/*-
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/*-
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* #%L
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* #%L
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@ -1,4 +1,4 @@
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package org.hl7.fhir.r5.validation;
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package org.hl7.fhir.validation;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.io.IOUtils;
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import org.hl7.fhir.convertors.*;
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import org.hl7.fhir.convertors.*;
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@ -22,7 +22,7 @@ import org.hl7.fhir.r5.terminologies.ConceptMapEngine;
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import org.hl7.fhir.r5.utils.*;
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import org.hl7.fhir.r5.utils.*;
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import org.hl7.fhir.r5.utils.IResourceValidator.*;
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import org.hl7.fhir.r5.utils.IResourceValidator.*;
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import org.hl7.fhir.r5.utils.StructureMapUtilities.ITransformerServices;
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import org.hl7.fhir.r5.utils.StructureMapUtilities.ITransformerServices;
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import org.hl7.fhir.r5.validation.instancevalidator.InstanceValidator;
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import org.hl7.fhir.validation.instance.InstanceValidator;
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import org.hl7.fhir.utilities.IniFile;
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import org.hl7.fhir.utilities.IniFile;
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import org.hl7.fhir.utilities.TextFile;
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import org.hl7.fhir.utilities.TextFile;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.Utilities;
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@ -1,4 +1,4 @@
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package org.hl7.fhir.r5.validation;
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package org.hl7.fhir.validation;
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/*-
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/*-
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* #%L
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* #%L
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@ -49,13 +49,8 @@ POSSIBILITY OF SUCH DAMAGE.
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*/
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*/
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import java.awt.Desktop;
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import java.awt.Desktop;
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import java.io.ByteArrayOutputStream;
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import java.io.File;
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import java.io.File;
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import java.io.FileOutputStream;
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import java.io.FileOutputStream;
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import java.io.IOException;
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import java.io.OutputStream;
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import java.net.HttpURLConnection;
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import java.net.URL;
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import java.util.ArrayList;
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import java.util.ArrayList;
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import java.util.HashMap;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.HashSet;
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@ -85,14 +80,13 @@ import org.hl7.fhir.r5.model.Resource;
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import org.hl7.fhir.r5.model.StructureDefinition;
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import org.hl7.fhir.r5.model.StructureDefinition;
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import org.hl7.fhir.r5.utils.KeyGenerator;
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import org.hl7.fhir.r5.utils.KeyGenerator;
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import org.hl7.fhir.r5.utils.ToolingExtensions;
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import org.hl7.fhir.r5.utils.ToolingExtensions;
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import org.hl7.fhir.r5.validation.ValidationEngine.ScanOutputItem;
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import org.hl7.fhir.validation.ValidationEngine.ScanOutputItem;
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import org.hl7.fhir.utilities.TextFile;
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import org.hl7.fhir.utilities.TextFile;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.VersionUtilities;
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import org.hl7.fhir.utilities.VersionUtilities;
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import org.hl7.fhir.utilities.cache.PackageCacheManager;
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import org.hl7.fhir.utilities.cache.PackageCacheManager;
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import org.hl7.fhir.utilities.cache.ToolsVersion;
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import org.hl7.fhir.utilities.cache.ToolsVersion;
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import org.hl7.fhir.utilities.validation.ValidationMessage;
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import org.hl7.fhir.utilities.validation.ValidationMessage;
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import org.hl7.fhir.utilities.xhtml.XhtmlComposer;
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/**
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/**
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* A executable class that will validate one or more FHIR resources against
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* A executable class that will validate one or more FHIR resources against
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@ -1,4 +1,4 @@
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package org.hl7.fhir.r5.validation;
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package org.hl7.fhir.validation;
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/*
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/*
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* #%L
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* #%L
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@ -1,4 +1,4 @@
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package org.hl7.fhir.r5.validation;
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package org.hl7.fhir.validation;
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import java.io.IOException;
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import java.io.IOException;
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import java.util.Date;
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import java.util.Date;
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@ -16,7 +16,6 @@ import org.hl7.fhir.r5.model.StructureDefinition.ExtensionContextType;
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import org.hl7.fhir.r5.model.StructureDefinition.StructureDefinitionKind;
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import org.hl7.fhir.r5.model.StructureDefinition.StructureDefinitionKind;
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import org.hl7.fhir.r5.model.StructureDefinition.TypeDerivationRule;
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import org.hl7.fhir.r5.model.StructureDefinition.TypeDerivationRule;
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import org.hl7.fhir.r5.model.UriType;
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import org.hl7.fhir.r5.model.UriType;
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import org.hl7.fhir.r5.validation.XVerExtensionManager.XVerExtensionStatus;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.VersionUtilities;
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import org.hl7.fhir.utilities.VersionUtilities;
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import org.hl7.fhir.utilities.json.JsonTrackingParser;
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import org.hl7.fhir.utilities.json.JsonTrackingParser;
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@ -1,4 +1,4 @@
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package org.hl7.fhir.r5.validation;
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package org.hl7.fhir.validation;
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/*-
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/*-
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* #%L
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* #%L
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@ -1,4 +1,4 @@
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package org.hl7.fhir.r5.validation;
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package org.hl7.fhir.validation.codesystem;
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/*-
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/*-
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* #%L
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* #%L
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@ -30,6 +30,7 @@ import org.hl7.fhir.r5.model.CodeSystem;
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import org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent;
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import org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent;
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import org.hl7.fhir.utilities.validation.ValidationMessage;
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import org.hl7.fhir.utilities.validation.ValidationMessage;
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import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
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import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
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import org.hl7.fhir.validation.BaseValidator;
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public class CodeSystemValidator extends BaseValidator {
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public class CodeSystemValidator extends BaseValidator {
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@ -1,4 +1,4 @@
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package org.hl7.fhir.r5.validation;
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package org.hl7.fhir.validation.instance;
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/*-
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/*-
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* #%L
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* #%L
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@ -9,9 +9,9 @@ package org.hl7.fhir.r5.validation;
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* Licensed under the Apache License, Version 2.0 (the "License");
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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* You may obtain a copy of the License at
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*
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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*
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* Unless required by applicable law or agreed to in writing, software
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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@ -28,14 +28,13 @@ import org.hl7.fhir.r5.elementmodel.Element;
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import org.hl7.fhir.r5.model.*;
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import org.hl7.fhir.r5.model.*;
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import org.hl7.fhir.r5.model.Questionnaire.*;
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import org.hl7.fhir.r5.model.Questionnaire.*;
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import org.hl7.fhir.r5.utils.FHIRPathEngine;
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import org.hl7.fhir.r5.utils.FHIRPathEngine;
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import org.hl7.fhir.r5.validation.instancevalidator.utils.ValidatorHostContext;
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import org.hl7.fhir.validation.instance.utils.ValidatorHostContext;
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import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException;
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import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException;
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/**
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/**
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* Evaluates Questionnaire.item.enableWhen against a QuestionnaireResponse.
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* Evaluates Questionnaire.item.enableWhen against a QuestionnaireResponse.
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* Ignores possible modifierExtensions and extensions.
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* Ignores possible modifierExtensions and extensions.
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*
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*/
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*/
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public class EnableWhenEvaluator {
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public class EnableWhenEvaluator {
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public static final String LINKID_ELEMENT = "linkId";
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public static final String LINKID_ELEMENT = "linkId";
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@ -46,26 +45,29 @@ public class EnableWhenEvaluator {
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public static class QuestionnaireAnswerPair {
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public static class QuestionnaireAnswerPair {
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private QuestionnaireItemComponent q;
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private QuestionnaireItemComponent q;
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private Element a;
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private Element a;
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public QuestionnaireAnswerPair(QuestionnaireItemComponent q, Element a) {
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public QuestionnaireAnswerPair(QuestionnaireItemComponent q, Element a) {
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super();
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super();
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this.q = q;
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this.q = q;
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this.a = a;
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this.a = a;
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}
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}
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public QuestionnaireItemComponent getQ() {
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public QuestionnaireItemComponent getQ() {
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return q;
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return q;
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}
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}
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public Element getA() {
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public Element getA() {
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return a;
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return a;
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}
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}
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}
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}
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public static class QStack extends ArrayList<QuestionnaireAnswerPair> {
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public static class QStack extends ArrayList<QuestionnaireAnswerPair> {
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private static final long serialVersionUID = 1L;
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private static final long serialVersionUID = 1L;
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private Questionnaire q;
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private Questionnaire q;
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private Element a;
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private Element a;
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public QStack(Questionnaire q, Element a) {
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public QStack(Questionnaire q, Element a) {
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super();
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super();
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this.q = q;
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this.q = q;
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@ -97,40 +99,30 @@ public class EnableWhenEvaluator {
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/**
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/**
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* Evaluation result of enableWhen condition
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* Evaluation result of enableWhen condition
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*
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*
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* @param enabled
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* @param enabled Evaluation result
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* Evaluation result
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* @param enableWhenCondition Evaluated enableWhen condition
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* @param linkId
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* LinkId of the questionnaire item
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* @param enableWhenCondition
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* Evaluated enableWhen condition
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* @param responseItem
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* item in QuestionnaireResponse
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*/
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*/
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public EnableWhenResult(boolean enabled, QuestionnaireItemEnableWhenComponent enableWhenCondition) {
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public EnableWhenResult(boolean enabled, QuestionnaireItemEnableWhenComponent enableWhenCondition) {
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this.enabled = enabled;
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this.enabled = enabled;
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this.enableWhenCondition = enableWhenCondition;
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this.enableWhenCondition = enableWhenCondition;
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}
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}
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public boolean isEnabled() {
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public boolean isEnabled() {
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return enabled;
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return enabled;
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}
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}
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public QuestionnaireItemEnableWhenComponent getEnableWhenCondition() {
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public QuestionnaireItemEnableWhenComponent getEnableWhenCondition() {
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return enableWhenCondition;
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return enableWhenCondition;
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}
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}
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}
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}
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/**
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/**
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* the stack contains a set of QR items that represent the tree of the QR being validated, each tagged with the definition of the item from the Q for the QR being validated
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* the stack contains a set of QR items that represent the tree of the QR being validated, each tagged with the definition of the item from the Q for the QR being validated
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*
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* <p>
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* the itembeing validated is in the context of the stack. For root items, the stack is empty.
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* the itembeing validated is in the context of the stack. For root items, the stack is empty.
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*
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* <p>
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* The context Questionnaire and QuestionnaireResponse are always available
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* The context Questionnaire and QuestionnaireResponse are always available
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*
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* @param questionnaireItem
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* @param questionnaireResponse
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* @param qstack
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* @return
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*/
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*/
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public boolean isQuestionEnabled(ValidatorHostContext hostContext, QuestionnaireItemComponent qitem, QStack qstack, FHIRPathEngine engine) {
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public boolean isQuestionEnabled(ValidatorHostContext hostContext, QuestionnaireItemComponent qitem, QStack qstack, FHIRPathEngine engine) {
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if (hasExpressionExtension(qitem)) {
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if (hasExpressionExtension(qitem)) {
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@ -138,22 +130,22 @@ public class EnableWhenEvaluator {
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ExpressionNode node = engine.parse(expr);
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ExpressionNode node = engine.parse(expr);
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return engine.evaluateToBoolean(hostContext, qstack.a, qstack.a, qstack.a, node);
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return engine.evaluateToBoolean(hostContext, qstack.a, qstack.a, qstack.a, node);
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}
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}
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if (!qitem.hasEnableWhen()) {
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if (!qitem.hasEnableWhen()) {
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return true;
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return true;
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}
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}
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|
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List<EnableWhenResult> evaluationResults = qitem.getEnableWhen()
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List<EnableWhenResult> evaluationResults = qitem.getEnableWhen()
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.stream()
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.stream()
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.map(enableCondition -> evaluateCondition(enableCondition, qitem, qstack))
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.map(enableCondition -> evaluateCondition(enableCondition, qitem, qstack))
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.collect(Collectors.toList());
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.collect(Collectors.toList());
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return checkConditionResults(evaluationResults, qitem);
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return checkConditionResults(evaluationResults, qitem);
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}
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}
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|
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private boolean hasExpressionExtension(QuestionnaireItemComponent qitem) {
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private boolean hasExpressionExtension(QuestionnaireItemComponent qitem) {
|
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return qitem.hasExtension("http://phr.kanta.fi/StructureDefinition/fiphr-ext-questionnaire-enablewhen") || // finnish extension
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return qitem.hasExtension("http://phr.kanta.fi/StructureDefinition/fiphr-ext-questionnaire-enablewhen") || // finnish extension
|
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qitem.hasExtension("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-enableWhenExpression"); // sdc extension
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qitem.hasExtension("http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-enableWhenExpression"); // sdc extension
|
||||||
}
|
}
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|
|
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private String getExpression(QuestionnaireItemComponent qitem) {
|
private String getExpression(QuestionnaireItemComponent qitem) {
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|
@ -164,17 +156,18 @@ public class EnableWhenEvaluator {
|
||||||
if ("text/fhirpath".equals(expr.getLanguage())) {
|
if ("text/fhirpath".equals(expr.getLanguage())) {
|
||||||
return expr.getExpression();
|
return expr.getExpression();
|
||||||
} else {
|
} else {
|
||||||
throw new FHIRException("Unsupported language '"+expr.getLanguage()+"' for enableWhen extension http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-enableWhenExpression");
|
throw new FHIRException("Unsupported language '" + expr.getLanguage() + "' for enableWhen extension http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-enableWhenExpression");
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
throw new Error("How did you get here?");
|
throw new Error("How did you get here?");
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
public boolean checkConditionResults(List<EnableWhenResult> evaluationResults, QuestionnaireItemComponent questionnaireItem) {
|
public boolean checkConditionResults(List<EnableWhenResult> evaluationResults, QuestionnaireItemComponent questionnaireItem) {
|
||||||
if ((questionnaireItem.hasEnableBehavior() && questionnaireItem.getEnableBehavior() == EnableWhenBehavior.ANY) || evaluationResults.size() == 1){
|
if ((questionnaireItem.hasEnableBehavior() && questionnaireItem.getEnableBehavior() == EnableWhenBehavior.ANY) || evaluationResults.size() == 1) {
|
||||||
return evaluationResults.stream().anyMatch(EnableWhenResult::isEnabled);
|
return evaluationResults.stream().anyMatch(EnableWhenResult::isEnabled);
|
||||||
} if (questionnaireItem.hasEnableBehavior() && questionnaireItem.getEnableBehavior() == EnableWhenBehavior.ALL){
|
}
|
||||||
|
if (questionnaireItem.hasEnableBehavior() && questionnaireItem.getEnableBehavior() == EnableWhenBehavior.ALL) {
|
||||||
return evaluationResults.stream().allMatch(EnableWhenResult::isEnabled);
|
return evaluationResults.stream().allMatch(EnableWhenResult::isEnabled);
|
||||||
}
|
}
|
||||||
//TODO: Throw exception? enableBehavior is mandatory when there are multiple conditions
|
//TODO: Throw exception? enableBehavior is mandatory when there are multiple conditions
|
||||||
|
@ -183,18 +176,18 @@ public class EnableWhenEvaluator {
|
||||||
|
|
||||||
|
|
||||||
protected EnableWhenResult evaluateCondition(QuestionnaireItemEnableWhenComponent enableCondition, QuestionnaireItemComponent qitem, QStack qstack) {
|
protected EnableWhenResult evaluateCondition(QuestionnaireItemEnableWhenComponent enableCondition, QuestionnaireItemComponent qitem, QStack qstack) {
|
||||||
List<Element> answerItems = findQuestionAnswers(qstack, qitem, enableCondition);
|
List<Element> answerItems = findQuestionAnswers(qstack, qitem, enableCondition);
|
||||||
QuestionnaireItemOperator operator = enableCondition.getOperator();
|
QuestionnaireItemOperator operator = enableCondition.getOperator();
|
||||||
if (operator == QuestionnaireItemOperator.EXISTS){
|
if (operator == QuestionnaireItemOperator.EXISTS) {
|
||||||
DataType answer = enableCondition.getAnswer();
|
DataType answer = enableCondition.getAnswer();
|
||||||
if (!(answer instanceof BooleanType)){
|
if (!(answer instanceof BooleanType)) {
|
||||||
throw new UnprocessableEntityException("Exists-operator requires answerBoolean");
|
throw new UnprocessableEntityException("Exists-operator requires answerBoolean");
|
||||||
}
|
}
|
||||||
return new EnableWhenResult(((BooleanType)answer).booleanValue() != answerItems.isEmpty(), enableCondition);
|
return new EnableWhenResult(((BooleanType) answer).booleanValue() != answerItems.isEmpty(), enableCondition);
|
||||||
}
|
}
|
||||||
boolean result = answerItems
|
boolean result = answerItems
|
||||||
.stream()
|
.stream()
|
||||||
.anyMatch(answer -> evaluateAnswer(answer, enableCondition.getAnswer(), enableCondition.getOperator()));
|
.anyMatch(answer -> evaluateAnswer(answer, enableCondition.getAnswer(), enableCondition.getOperator()));
|
||||||
return new EnableWhenResult(result, enableCondition);
|
return new EnableWhenResult(result, enableCondition);
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@ -235,71 +228,71 @@ public class EnableWhenEvaluator {
|
||||||
}
|
}
|
||||||
if (!actualAnswer.getClass().equals(expectedAnswer.getClass())) {
|
if (!actualAnswer.getClass().equals(expectedAnswer.getClass())) {
|
||||||
throw new UnprocessableEntityException("Expected answer and actual answer have incompatible types");
|
throw new UnprocessableEntityException("Expected answer and actual answer have incompatible types");
|
||||||
}
|
}
|
||||||
if (expectedAnswer instanceof Coding) {
|
if (expectedAnswer instanceof Coding) {
|
||||||
return compareCodingAnswer((Coding)expectedAnswer, (Coding)actualAnswer, questionnaireItemOperator);
|
return compareCodingAnswer((Coding) expectedAnswer, (Coding) actualAnswer, questionnaireItemOperator);
|
||||||
} else if ((expectedAnswer instanceof PrimitiveType)) {
|
} else if ((expectedAnswer instanceof PrimitiveType)) {
|
||||||
return comparePrimitiveAnswer((PrimitiveType<?>)actualAnswer, (PrimitiveType<?>)expectedAnswer, questionnaireItemOperator);
|
return comparePrimitiveAnswer((PrimitiveType<?>) actualAnswer, (PrimitiveType<?>) expectedAnswer, questionnaireItemOperator);
|
||||||
} else if (expectedAnswer instanceof Quantity) {
|
} else if (expectedAnswer instanceof Quantity) {
|
||||||
return compareQuantityAnswer((Quantity)actualAnswer, (Quantity)expectedAnswer, questionnaireItemOperator);
|
return compareQuantityAnswer((Quantity) actualAnswer, (Quantity) expectedAnswer, questionnaireItemOperator);
|
||||||
}
|
}
|
||||||
// TODO: Attachment, reference?
|
// TODO: Attachment, reference?
|
||||||
throw new UnprocessableEntityException("Unimplemented answer type: " + expectedAnswer.getClass());
|
throw new UnprocessableEntityException("Unimplemented answer type: " + expectedAnswer.getClass());
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
private boolean compareQuantityAnswer(Quantity actualAnswer, Quantity expectedAnswer, QuestionnaireItemOperator questionnaireItemOperator) {
|
private boolean compareQuantityAnswer(Quantity actualAnswer, Quantity expectedAnswer, QuestionnaireItemOperator questionnaireItemOperator) {
|
||||||
return compareComparable(actualAnswer.getValue(), expectedAnswer.getValue(), questionnaireItemOperator);
|
return compareComparable(actualAnswer.getValue(), expectedAnswer.getValue(), questionnaireItemOperator);
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
private boolean comparePrimitiveAnswer(PrimitiveType<?> actualAnswer, PrimitiveType<?> expectedAnswer, QuestionnaireItemOperator questionnaireItemOperator) {
|
private boolean comparePrimitiveAnswer(PrimitiveType<?> actualAnswer, PrimitiveType<?> expectedAnswer, QuestionnaireItemOperator questionnaireItemOperator) {
|
||||||
if (actualAnswer.getValue() instanceof Comparable){
|
if (actualAnswer.getValue() instanceof Comparable) {
|
||||||
return compareComparable((Comparable<?>)actualAnswer.getValue(), (Comparable<?>) expectedAnswer.getValue(), questionnaireItemOperator);
|
return compareComparable((Comparable<?>) actualAnswer.getValue(), (Comparable<?>) expectedAnswer.getValue(), questionnaireItemOperator);
|
||||||
} else if (questionnaireItemOperator == QuestionnaireItemOperator.EQUAL){
|
} else if (questionnaireItemOperator == QuestionnaireItemOperator.EQUAL) {
|
||||||
return actualAnswer.equalsShallow(expectedAnswer);
|
return actualAnswer.equalsShallow(expectedAnswer);
|
||||||
} else if (questionnaireItemOperator == QuestionnaireItemOperator.NOT_EQUAL){
|
} else if (questionnaireItemOperator == QuestionnaireItemOperator.NOT_EQUAL) {
|
||||||
return !actualAnswer.equalsShallow(expectedAnswer);
|
return !actualAnswer.equalsShallow(expectedAnswer);
|
||||||
}
|
}
|
||||||
throw new UnprocessableEntityException("Bad operator for PrimitiveType comparison");
|
throw new UnprocessableEntityException("Bad operator for PrimitiveType comparison");
|
||||||
}
|
}
|
||||||
|
|
||||||
@SuppressWarnings({ "rawtypes", "unchecked" })
|
@SuppressWarnings({"rawtypes", "unchecked"})
|
||||||
private boolean compareComparable(Comparable actual, Comparable expected,
|
private boolean compareComparable(Comparable actual, Comparable expected,
|
||||||
QuestionnaireItemOperator questionnaireItemOperator) {
|
QuestionnaireItemOperator questionnaireItemOperator) {
|
||||||
int result = actual.compareTo(expected);
|
int result = actual.compareTo(expected);
|
||||||
|
|
||||||
if (questionnaireItemOperator == QuestionnaireItemOperator.EQUAL){
|
if (questionnaireItemOperator == QuestionnaireItemOperator.EQUAL) {
|
||||||
return result == 0;
|
return result == 0;
|
||||||
} else if (questionnaireItemOperator == QuestionnaireItemOperator.NOT_EQUAL){
|
} else if (questionnaireItemOperator == QuestionnaireItemOperator.NOT_EQUAL) {
|
||||||
return result != 0;
|
return result != 0;
|
||||||
} else if (questionnaireItemOperator == QuestionnaireItemOperator.GREATER_OR_EQUAL){
|
} else if (questionnaireItemOperator == QuestionnaireItemOperator.GREATER_OR_EQUAL) {
|
||||||
return result >= 0;
|
return result >= 0;
|
||||||
} else if (questionnaireItemOperator == QuestionnaireItemOperator.LESS_OR_EQUAL){
|
} else if (questionnaireItemOperator == QuestionnaireItemOperator.LESS_OR_EQUAL) {
|
||||||
return result <= 0;
|
return result <= 0;
|
||||||
} else if (questionnaireItemOperator == QuestionnaireItemOperator.LESS_THAN){
|
} else if (questionnaireItemOperator == QuestionnaireItemOperator.LESS_THAN) {
|
||||||
return result < 0;
|
return result < 0;
|
||||||
} else if (questionnaireItemOperator == QuestionnaireItemOperator.GREATER_THAN){
|
} else if (questionnaireItemOperator == QuestionnaireItemOperator.GREATER_THAN) {
|
||||||
return result > 0;
|
return result > 0;
|
||||||
}
|
}
|
||||||
|
|
||||||
throw new UnprocessableEntityException("Bad operator for PrimitiveType comparison: "+questionnaireItemOperator.toCode());
|
throw new UnprocessableEntityException("Bad operator for PrimitiveType comparison: " + questionnaireItemOperator.toCode());
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
||||||
/**
|
/**
|
||||||
* Recursively look for answers to questions with the given link id, working upwards given the context
|
* Recursively look for answers to questions with the given link id, working upwards given the context
|
||||||
*
|
* <p>
|
||||||
* For discussion about this, see https://chat.fhir.org/#narrow/stream/179255-questionnaire/topic/enable-when
|
* For discussion about this, see https://chat.fhir.org/#narrow/stream/179255-questionnaire/topic/enable-when
|
||||||
*
|
* <p>
|
||||||
- given sourceQ - question that contains the enableWhen reference and targetQ - question that the enableWhen references in the Q and also sourceA - answer for sourceQ and targetA - answer for targetQ in the QR
|
* - given sourceQ - question that contains the enableWhen reference and targetQ - question that the enableWhen references in the Q and also sourceA - answer for sourceQ and targetA - answer for targetQ in the QR
|
||||||
- work up from sourceQ until you find the Q group that also contains targetQ - this is groupQ
|
* - work up from sourceQ until you find the Q group that also contains targetQ - this is groupQ
|
||||||
- work up from sourceA until you find the QR group that matches groupQ - this is groupA
|
* - work up from sourceA until you find the QR group that matches groupQ - this is groupA
|
||||||
- any targetA in groupA are input for the enableWhen decision
|
* - any targetA in groupA are input for the enableWhen decision
|
||||||
*/
|
*/
|
||||||
private List<Element> findQuestionAnswers(QStack qstack, QuestionnaireItemComponent sourceQ, QuestionnaireItemEnableWhenComponent ew) {
|
private List<Element> findQuestionAnswers(QStack qstack, QuestionnaireItemComponent sourceQ, QuestionnaireItemEnableWhenComponent ew) {
|
||||||
QuestionnaireItemComponent targetQ = qstack.getQ().getQuestion(ew.getQuestion());
|
QuestionnaireItemComponent targetQ = qstack.getQ().getQuestion(ew.getQuestion());
|
||||||
if (targetQ != null) {
|
if (targetQ != null) {
|
||||||
QuestionnaireItemComponent groupQ = qstack.getQ().getCommonGroup(sourceQ, targetQ);
|
QuestionnaireItemComponent groupQ = qstack.getQ().getCommonGroup(sourceQ, targetQ);
|
||||||
if (groupQ == null) { // root is Q itself
|
if (groupQ == null) { // root is Q itself
|
||||||
return findOnItem(qstack.getA(), ew.getQuestion());
|
return findOnItem(qstack.getA(), ew.getQuestion());
|
||||||
|
@ -341,16 +334,16 @@ public class EnableWhenEvaluator {
|
||||||
|
|
||||||
private List<Element> extractAnswer(Element item) {
|
private List<Element> extractAnswer(Element item) {
|
||||||
return item.getChildrenByName(ANSWER_ELEMENT)
|
return item.getChildrenByName(ANSWER_ELEMENT)
|
||||||
.stream()
|
.stream()
|
||||||
.flatMap(c -> c.getChildren().stream())
|
.flatMap(c -> c.getChildren().stream())
|
||||||
.collect(Collectors.toList());
|
.collect(Collectors.toList());
|
||||||
}
|
}
|
||||||
|
|
||||||
private boolean compareCodingAnswer(Coding expectedAnswer, Coding actualAnswer, QuestionnaireItemOperator questionnaireItemOperator) {
|
private boolean compareCodingAnswer(Coding expectedAnswer, Coding actualAnswer, QuestionnaireItemOperator questionnaireItemOperator) {
|
||||||
boolean result = compareSystems(expectedAnswer, actualAnswer) && compareCodes(expectedAnswer, actualAnswer);
|
boolean result = compareSystems(expectedAnswer, actualAnswer) && compareCodes(expectedAnswer, actualAnswer);
|
||||||
if (questionnaireItemOperator == QuestionnaireItemOperator.EQUAL){
|
if (questionnaireItemOperator == QuestionnaireItemOperator.EQUAL) {
|
||||||
return result == true;
|
return result == true;
|
||||||
} else if (questionnaireItemOperator == QuestionnaireItemOperator.NOT_EQUAL){
|
} else if (questionnaireItemOperator == QuestionnaireItemOperator.NOT_EQUAL) {
|
||||||
return result == false;
|
return result == false;
|
||||||
}
|
}
|
||||||
throw new UnprocessableEntityException("Bad operator for Coding comparison");
|
throw new UnprocessableEntityException("Bad operator for Coding comparison");
|
||||||
|
@ -378,7 +371,7 @@ public class EnableWhenEvaluator {
|
||||||
|
|
||||||
private boolean hasLinkId(Element item, String linkId) {
|
private boolean hasLinkId(Element item, String linkId) {
|
||||||
Element linkIdChild = item.getNamedChild(LINKID_ELEMENT);
|
Element linkIdChild = item.getNamedChild(LINKID_ELEMENT);
|
||||||
if (linkIdChild != null && linkIdChild.getValue().equals(linkId)){
|
if (linkIdChild != null && linkIdChild.getValue().equals(linkId)) {
|
||||||
return true;
|
return true;
|
||||||
}
|
}
|
||||||
return false;
|
return false;
|
|
@ -1,4 +1,4 @@
|
||||||
package org.hl7.fhir.r5.validation.instancevalidator;
|
package org.hl7.fhir.validation.instance;
|
||||||
|
|
||||||
/*-
|
/*-
|
||||||
* #%L
|
* #%L
|
||||||
|
@ -126,11 +126,9 @@ import org.hl7.fhir.r5.utils.FHIRPathEngine;
|
||||||
import org.hl7.fhir.r5.utils.FHIRPathEngine.IEvaluationContext;
|
import org.hl7.fhir.r5.utils.FHIRPathEngine.IEvaluationContext;
|
||||||
import org.hl7.fhir.r5.utils.IResourceValidator;
|
import org.hl7.fhir.r5.utils.IResourceValidator;
|
||||||
import org.hl7.fhir.r5.utils.ToolingExtensions;
|
import org.hl7.fhir.r5.utils.ToolingExtensions;
|
||||||
import org.hl7.fhir.r5.validation.BaseValidator;
|
import org.hl7.fhir.validation.BaseValidator;
|
||||||
import org.hl7.fhir.r5.validation.EnableWhenEvaluator;
|
import org.hl7.fhir.validation.instance.EnableWhenEvaluator.QStack;
|
||||||
import org.hl7.fhir.r5.validation.EnableWhenEvaluator.QStack;
|
import org.hl7.fhir.validation.XVerExtensionManager;
|
||||||
import org.hl7.fhir.r5.validation.XVerExtensionManager;
|
|
||||||
import org.hl7.fhir.r5.validation.instancevalidator.utils.*;
|
|
||||||
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
|
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
import org.hl7.fhir.utilities.Utilities.DecimalStatus;
|
import org.hl7.fhir.utilities.Utilities.DecimalStatus;
|
||||||
|
@ -142,6 +140,7 @@ import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
|
||||||
import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
|
import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
|
||||||
import org.hl7.fhir.utilities.xhtml.NodeType;
|
import org.hl7.fhir.utilities.xhtml.NodeType;
|
||||||
import org.hl7.fhir.utilities.xhtml.XhtmlNode;
|
import org.hl7.fhir.utilities.xhtml.XhtmlNode;
|
||||||
|
import org.hl7.fhir.validation.instance.utils.*;
|
||||||
import org.w3c.dom.Document;
|
import org.w3c.dom.Document;
|
||||||
|
|
||||||
import com.google.gson.Gson;
|
import com.google.gson.Gson;
|
|
@ -1,4 +1,4 @@
|
||||||
package org.hl7.fhir.r5.validation.instancevalidator;
|
package org.hl7.fhir.validation.instance;
|
||||||
|
|
||||||
import org.hl7.fhir.exceptions.FHIRException;
|
import org.hl7.fhir.exceptions.FHIRException;
|
||||||
|
|
|
@ -1,7 +1,7 @@
|
||||||
package org.hl7.fhir.r5.validation.instancevalidator.utils;
|
package org.hl7.fhir.validation.instance.utils;
|
||||||
|
|
||||||
import org.hl7.fhir.r5.elementmodel.Element;
|
import org.hl7.fhir.r5.elementmodel.Element;
|
||||||
import org.hl7.fhir.r5.validation.instancevalidator.InstanceValidator;
|
import org.hl7.fhir.validation.instance.InstanceValidator;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
|
|
||||||
public class ChildIterator {
|
public class ChildIterator {
|
|
@ -1,4 +1,4 @@
|
||||||
package org.hl7.fhir.r5.validation.instancevalidator.utils;
|
package org.hl7.fhir.validation.instance.utils;
|
||||||
|
|
||||||
import org.hl7.fhir.r5.elementmodel.Element;
|
import org.hl7.fhir.r5.elementmodel.Element;
|
||||||
import org.hl7.fhir.r5.model.ElementDefinition;
|
import org.hl7.fhir.r5.model.ElementDefinition;
|
|
@ -1,7 +1,6 @@
|
||||||
package org.hl7.fhir.r5.validation.instancevalidator.utils;
|
package org.hl7.fhir.validation.instance.utils;
|
||||||
|
|
||||||
import org.hl7.fhir.r5.elementmodel.Element;
|
import org.hl7.fhir.r5.elementmodel.Element;
|
||||||
import org.hl7.fhir.r5.validation.instancevalidator.InstanceValidator;
|
|
||||||
|
|
||||||
import java.util.ArrayList;
|
import java.util.ArrayList;
|
||||||
import java.util.List;
|
import java.util.List;
|
|
@ -1,4 +1,4 @@
|
||||||
package org.hl7.fhir.r5.validation.instancevalidator.utils;
|
package org.hl7.fhir.validation.instance.utils;
|
||||||
|
|
||||||
import org.hl7.fhir.r5.elementmodel.Element;
|
import org.hl7.fhir.r5.elementmodel.Element;
|
||||||
|
|
|
@ -1,8 +1,8 @@
|
||||||
package org.hl7.fhir.r5.validation.instancevalidator.utils;
|
package org.hl7.fhir.validation.instance.utils;
|
||||||
|
|
||||||
import org.hl7.fhir.r5.elementmodel.Element;
|
import org.hl7.fhir.r5.elementmodel.Element;
|
||||||
import org.hl7.fhir.r5.model.StructureDefinition;
|
import org.hl7.fhir.r5.model.StructureDefinition;
|
||||||
import org.hl7.fhir.r5.validation.instancevalidator.InstanceValidator;
|
import org.hl7.fhir.validation.instance.InstanceValidator;
|
||||||
|
|
||||||
public class ResolvedReference {
|
public class ResolvedReference {
|
||||||
|
|
|
@ -1,4 +1,4 @@
|
||||||
package org.hl7.fhir.r5.validation.instancevalidator.utils;
|
package org.hl7.fhir.validation.instance.utils;
|
||||||
|
|
||||||
import org.hl7.fhir.r5.model.StructureDefinition;
|
import org.hl7.fhir.r5.model.StructureDefinition;
|
||||||
import org.hl7.fhir.utilities.validation.ValidationMessage;
|
import org.hl7.fhir.utilities.validation.ValidationMessage;
|
|
@ -1,4 +1,4 @@
|
||||||
package org.hl7.fhir.r5.validation.instancevalidator.utils;
|
package org.hl7.fhir.validation.instance.utils;
|
||||||
|
|
||||||
import org.hl7.fhir.r5.elementmodel.Element;
|
import org.hl7.fhir.r5.elementmodel.Element;
|
||||||
import org.hl7.fhir.r5.model.StructureDefinition;
|
import org.hl7.fhir.r5.model.StructureDefinition;
|
|
@ -1,4 +1,4 @@
|
||||||
package org.hl7.fhir.r5.validation;
|
package org.hl7.fhir.validation.profile;
|
||||||
|
|
||||||
/*-
|
/*-
|
||||||
* #%L
|
* #%L
|
||||||
|
@ -20,7 +20,6 @@ package org.hl7.fhir.r5.validation;
|
||||||
* #L%
|
* #L%
|
||||||
*/
|
*/
|
||||||
|
|
||||||
|
|
||||||
import java.util.ArrayList;
|
import java.util.ArrayList;
|
||||||
import java.util.Hashtable;
|
import java.util.Hashtable;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
@ -34,6 +33,7 @@ import org.hl7.fhir.r5.utils.FHIRPathEngine;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
import org.hl7.fhir.utilities.validation.ValidationMessage;
|
import org.hl7.fhir.utilities.validation.ValidationMessage;
|
||||||
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
|
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
|
||||||
|
import org.hl7.fhir.validation.BaseValidator;
|
||||||
|
|
||||||
public class ProfileValidator extends BaseValidator {
|
public class ProfileValidator extends BaseValidator {
|
||||||
|
|
|
@ -2,8 +2,7 @@ package org.hl7.fhir.validation.tests;
|
||||||
|
|
||||||
import org.hl7.fhir.r4.context.SimpleWorkerContext;
|
import org.hl7.fhir.r4.context.SimpleWorkerContext;
|
||||||
import org.hl7.fhir.r5.test.utils.TestingUtilities;
|
import org.hl7.fhir.r5.test.utils.TestingUtilities;
|
||||||
import org.hl7.fhir.r5.validation.Validator;
|
import org.hl7.fhir.validation.Validator;
|
||||||
import org.hl7.fhir.validation.tests.utilities.TestUtilities;
|
|
||||||
import org.junit.Test;
|
import org.junit.Test;
|
||||||
|
|
||||||
public class CDAValidationTestCase {
|
public class CDAValidationTestCase {
|
||||||
|
|
|
@ -2,9 +2,7 @@ package org.hl7.fhir.validation.tests;
|
||||||
|
|
||||||
import org.hl7.fhir.r5.elementmodel.Manager.FhirFormat;
|
import org.hl7.fhir.r5.elementmodel.Manager.FhirFormat;
|
||||||
import org.hl7.fhir.r5.test.utils.TestingUtilities;
|
import org.hl7.fhir.r5.test.utils.TestingUtilities;
|
||||||
import org.hl7.fhir.r5.validation.NativeHostServices;
|
import org.hl7.fhir.validation.NativeHostServices;
|
||||||
import org.hl7.fhir.utilities.TextFile;
|
|
||||||
import org.hl7.fhir.validation.tests.utilities.TestUtilities;
|
|
||||||
import org.junit.Test;
|
import org.junit.Test;
|
||||||
|
|
||||||
public class NativeHostServiceTester {
|
public class NativeHostServiceTester {
|
||||||
|
|
|
@ -1,19 +1,15 @@
|
||||||
package org.hl7.fhir.validation.tests;
|
package org.hl7.fhir.validation.tests;
|
||||||
|
|
||||||
import java.awt.Desktop;
|
|
||||||
import java.io.File;
|
import java.io.File;
|
||||||
import java.util.UUID;
|
import java.util.UUID;
|
||||||
|
|
||||||
import org.hl7.fhir.r5.conformance.ProfileComparer;
|
import org.hl7.fhir.r5.conformance.ProfileComparer;
|
||||||
import org.hl7.fhir.r5.model.FhirPublication;
|
import org.hl7.fhir.r5.model.FhirPublication;
|
||||||
import org.hl7.fhir.r5.model.OperationOutcome;
|
|
||||||
import org.hl7.fhir.r5.model.StructureDefinition;
|
import org.hl7.fhir.r5.model.StructureDefinition;
|
||||||
import org.hl7.fhir.r5.utils.KeyGenerator;
|
import org.hl7.fhir.r5.utils.KeyGenerator;
|
||||||
import org.hl7.fhir.r5.model.OperationOutcome.OperationOutcomeIssueComponent;
|
|
||||||
import org.hl7.fhir.r5.test.utils.TestingUtilities;
|
import org.hl7.fhir.r5.test.utils.TestingUtilities;
|
||||||
import org.hl7.fhir.r5.validation.ValidationEngine;
|
import org.hl7.fhir.validation.ValidationEngine;
|
||||||
import org.hl7.fhir.validation.tests.utilities.TestUtilities;
|
import org.hl7.fhir.validation.tests.utilities.TestUtilities;
|
||||||
import org.junit.Assert;
|
|
||||||
import org.junit.Test;
|
import org.junit.Test;
|
||||||
|
|
||||||
public class ProfileComparisonTests {
|
public class ProfileComparisonTests {
|
||||||
|
|
|
@ -3,7 +3,7 @@ package org.hl7.fhir.validation.tests;
|
||||||
import java.io.File;
|
import java.io.File;
|
||||||
|
|
||||||
import org.hl7.fhir.r4.test.utils.TestingUtilities;
|
import org.hl7.fhir.r4.test.utils.TestingUtilities;
|
||||||
import org.hl7.fhir.r5.validation.Validator;
|
import org.hl7.fhir.validation.Validator;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
import org.junit.Test;
|
import org.junit.Test;
|
||||||
|
|
||||||
|
|
|
@ -1,6 +1,5 @@
|
||||||
package org.hl7.fhir.validation.tests;
|
package org.hl7.fhir.validation.tests;
|
||||||
|
|
||||||
import java.io.IOException;
|
|
||||||
import java.util.ArrayList;
|
import java.util.ArrayList;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
|
||||||
|
@ -10,8 +9,7 @@ import org.hl7.fhir.r5.model.OperationOutcome;
|
||||||
import org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity;
|
import org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity;
|
||||||
import org.hl7.fhir.r5.model.OperationOutcome.OperationOutcomeIssueComponent;
|
import org.hl7.fhir.r5.model.OperationOutcome.OperationOutcomeIssueComponent;
|
||||||
import org.hl7.fhir.r5.test.utils.TestingUtilities;
|
import org.hl7.fhir.r5.test.utils.TestingUtilities;
|
||||||
import org.hl7.fhir.r5.validation.ValidationEngine;
|
import org.hl7.fhir.validation.ValidationEngine;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
|
||||||
import org.hl7.fhir.validation.tests.utilities.TestUtilities;
|
import org.hl7.fhir.validation.tests.utilities.TestUtilities;
|
||||||
import org.junit.Assert;
|
import org.junit.Assert;
|
||||||
import org.junit.Test;
|
import org.junit.Test;
|
||||||
|
|
|
@ -26,8 +26,8 @@ import org.hl7.fhir.r5.utils.FHIRPathEngine.IEvaluationContext;
|
||||||
import org.hl7.fhir.r5.utils.IResourceValidator;
|
import org.hl7.fhir.r5.utils.IResourceValidator;
|
||||||
import org.hl7.fhir.r5.utils.IResourceValidator.IValidatorResourceFetcher;
|
import org.hl7.fhir.r5.utils.IResourceValidator.IValidatorResourceFetcher;
|
||||||
import org.hl7.fhir.r5.utils.IResourceValidator.ReferenceValidationPolicy;
|
import org.hl7.fhir.r5.utils.IResourceValidator.ReferenceValidationPolicy;
|
||||||
import org.hl7.fhir.r5.validation.instancevalidator.InstanceValidator;
|
import org.hl7.fhir.validation.instance.InstanceValidator;
|
||||||
import org.hl7.fhir.r5.validation.ValidationEngine;
|
import org.hl7.fhir.validation.ValidationEngine;
|
||||||
import org.hl7.fhir.utilities.TextFile;
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
import org.hl7.fhir.utilities.VersionUtilities;
|
import org.hl7.fhir.utilities.VersionUtilities;
|
||||||
|
|
Loading…
Reference in New Issue