add medication conversion from dstu2 to r4 (#430)
* add medication conversion from dstu2 to r4 * fixed test * add description to the release notes
This commit is contained in:
ItayGoren
GitHub
parent
82546c5764
commit
42d148a80e
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@ -0,0 +1 @@
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add medication conversion from dstu2 to r4
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@ -2923,6 +2923,8 @@ public class VersionConvertor_10_40 {
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return TestScript10_40.convertTestScript((org.hl7.fhir.dstu2.model.TestScript) src);
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if (src instanceof org.hl7.fhir.dstu2.model.ValueSet)
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return ValueSet10_40.convertValueSet((org.hl7.fhir.dstu2.model.ValueSet) src, advisor);
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if (src instanceof org.hl7.fhir.dstu2.model.Medication)
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return Medication10_40.convertMedication((org.hl7.fhir.dstu2.model.Medication) src);
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throw new FHIRException("Unknown resource " + src.fhirType());
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}
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@ -3062,4 +3064,4 @@ public class VersionConvertor_10_40 {
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copyElement(src, tgt);
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return tgt;
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}
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}
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}
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package org.hl7.fhir.convertors.conv10_40;
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import org.hl7.fhir.convertors.VersionConvertor_10_40;
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import org.hl7.fhir.exceptions.FHIRException;
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import org.hl7.fhir.r4.model.Extension;
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import org.hl7.fhir.r4.model.Medication;
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import org.hl7.fhir.r4.model.Type;
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import java.util.List;
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public class Medication10_40 {
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public static org.hl7.fhir.r4.model.Medication convertMedication(org.hl7.fhir.dstu2.model.Medication src) throws FHIRException {
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if (src == null || src.isEmpty())
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return null;
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org.hl7.fhir.r4.model.Medication tgt = new org.hl7.fhir.r4.model.Medication();
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VersionConvertor_10_40.copyDomainResource(src, tgt);
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if (src.hasCode())
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tgt.setCode(VersionConvertor_10_40.convertCodeableConcept(src.getCode()));
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if (src.hasIsBrandElement())
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tgt.addExtension(
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"http://hl7.org/fhir/3.0/StructureDefinition/extension-Medication.isBrand",
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VersionConvertor_10_40.convertBoolean(src.getIsBrandElement())
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);
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if (src.hasManufacturer())
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tgt.setManufacturer(VersionConvertor_10_40.convertReference(src.getManufacturer()));
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if (src.hasProduct()) {
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if (src.getProduct().hasForm())
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tgt.setForm(VersionConvertor_10_40.convertCodeableConcept(src.getProduct().getForm()));
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for (org.hl7.fhir.dstu2.model.Medication.MedicationProductIngredientComponent ingridient : src.getProduct().getIngredient())
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tgt.addIngredient(convertMedicationIngridient(ingridient));
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if (src.getProduct().hasBatch())
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tgt.setBatch(batch(src.getProduct().getBatch().get(0)));
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}
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if (src.hasPackage()) {
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org.hl7.fhir.dstu2.model.Medication.MedicationPackageComponent package_ = src.getPackage();
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if (package_.hasContainer())
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tgt.addExtension(
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"http://hl7.org/fhir/3.0/StructureDefinition/extension-Medication.package.container",
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VersionConvertor_10_40.convertCodeableConcept(package_.getContainer())
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);
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for (org.hl7.fhir.dstu2.model.Medication.MedicationPackageContentComponent c : package_.getContent())
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tgt.addExtension(
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"http://hl7.org/fhir/3.0/StructureDefinition/extension-Medication.package.content",
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content(c)
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);
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}
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return tgt;
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}
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private static org.hl7.fhir.r4.model.Medication.MedicationBatchComponent batch(org.hl7.fhir.dstu2.model.Medication.MedicationProductBatchComponent src) {
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if (src == null || src.isEmpty())
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return null;
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org.hl7.fhir.r4.model.Medication.MedicationBatchComponent tgt = new org.hl7.fhir.r4.model.Medication.MedicationBatchComponent();
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VersionConvertor_10_40.copyElement(src, tgt);
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if (src.hasLotNumber())
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tgt.setLotNumber(src.getLotNumber());
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if (src.hasExpirationDate())
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tgt.setExpirationDate(src.getExpirationDate());
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return tgt;
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}
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private static org.hl7.fhir.r4.model.Extension content(org.hl7.fhir.dstu2.model.Medication.MedicationPackageContentComponent src) {
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if (src == null || src.isEmpty())
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return null;
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org.hl7.fhir.r4.model.Extension tgt = new org.hl7.fhir.r4.model.Extension();
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VersionConvertor_10_40.copyElement(src, tgt);
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if (src.hasItem())
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tgt.addExtension(
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"http://hl7.org/fhir/3.0/StructureDefinition/extension-Medication.package.content",
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VersionConvertor_10_40.convertReference(src.getItem())
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);
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if (src.hasAmount())
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tgt.addExtension(
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"http://hl7.org/fhir/3.0/StructureDefinition/extension-Medication.package.content.amount",
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VersionConvertor_10_40.convertSimpleQuantity(src.getAmount())
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);
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return tgt;
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}
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private static org.hl7.fhir.r4.model.Medication.MedicationIngredientComponent convertMedicationIngridient(org.hl7.fhir.dstu2.model.Medication.MedicationProductIngredientComponent src) {
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if (src == null || src.isEmpty())
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return null;
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org.hl7.fhir.r4.model.Medication.MedicationIngredientComponent tgt = new org.hl7.fhir.r4.model.Medication.MedicationIngredientComponent();
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VersionConvertor_10_40.copyElement(src, tgt);
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if (src.hasItem())
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tgt.setItem(VersionConvertor_10_40.convertReference(src.getItem()));
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if (src.hasAmount())
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tgt.setStrength(VersionConvertor_10_40.convertRatio(src.getAmount()));
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return tgt;
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}
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}
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@ -0,0 +1,31 @@
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package org.hl7.fhir.convertors.conv10_40;
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import org.hl7.fhir.convertors.VersionConvertorAdvisor40;
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import org.hl7.fhir.convertors.VersionConvertor_10_40;
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import org.hl7.fhir.convertors.misc.IGR2ConvertorAdvisor;
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import org.junit.jupiter.api.Assertions;
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import org.junit.jupiter.api.DisplayName;
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import org.junit.jupiter.api.Test;
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import java.io.IOException;
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import java.io.InputStream;
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public class Medication10_40Test {
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@Test
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@DisplayName("Test 10_40 Medication conversion")
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public void testMedicationConversion() throws IOException {
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InputStream dstu2_input = this.getClass().getResourceAsStream("/0_medication_10.json");
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InputStream r4_exepected_input = this.getClass().getResourceAsStream("/0_medication_40.json");
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org.hl7.fhir.dstu2.model.Medication dstu2 = (org.hl7.fhir.dstu2.model.Medication) new org.hl7.fhir.dstu2.formats.JsonParser().parse(dstu2_input);
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VersionConvertorAdvisor40 advisor = new IGR2ConvertorAdvisor();
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org.hl7.fhir.r4.model.Resource r4_actual = VersionConvertor_10_40.convertResource(dstu2, advisor);
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org.hl7.fhir.r4.formats.JsonParser r4_parser = new org.hl7.fhir.r4.formats.JsonParser();
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org.hl7.fhir.r4.model.Resource r4_expected = r4_parser.parse(r4_exepected_input);
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Assertions.assertTrue(r4_expected.equalsDeep(r4_actual),
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"Failed comparing\n" + r4_parser.composeString(r4_actual) + "\nand\n" + r4_parser.composeString(r4_expected));
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}
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}
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{
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"resourceType": "Medication",
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"id": "FOBAfoba",
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"code": {
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"coding": [
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{
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"system": "http://www.nlm.nih.gov/research/umls/rxnorm",
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"code": "309309",
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"display": "CIPROFLOXACIN 500 MG TABLET"
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}
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],
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"text": "CIPROFLOXACIN 500 MG TABLET"
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},
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"form": {
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"coding": [
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{
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"system": "urn:oid:1.2.840.114350.1.13.331.2.7.4.698288.310",
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"code": "81",
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"display": "Tablet"
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}
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],
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"text": "Tablet"
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}
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}
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{
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"resourceType": "Medication",
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"id": "FOBAfoba",
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"code": {
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"coding": [
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{
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"system": "http://www.nlm.nih.gov/research/umls/rxnorm",
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"code": "309309",
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"display": "CIPROFLOXACIN 500 MG TABLET"
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}
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],
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"text": "CIPROFLOXACIN 500 MG TABLET"
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},
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"product": {
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"form": {
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"coding": [
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{
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"system": "urn:oid:1.2.840.114350.1.13.331.2.7.4.698288.310",
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"code": "81",
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"display": "Tablet"
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}
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],
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"text": "Tablet"
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}
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}
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}
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