check in new resource manager
This commit is contained in:
Grahame Grieve
parent
5fe2552a08
commit
4b173cbfb3
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@ -23,6 +23,8 @@ package org.hl7.fhir.r5.context;
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import java.io.FileNotFoundException;
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import java.io.IOException;
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import java.util.ArrayList;
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import java.util.Collections;
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import java.util.Comparator;
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import java.util.Date;
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import java.util.HashMap;
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import java.util.HashSet;
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@ -36,6 +38,7 @@ import org.hl7.fhir.exceptions.DefinitionException;
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import org.hl7.fhir.exceptions.FHIRException;
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import org.hl7.fhir.exceptions.TerminologyServiceException;
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import org.hl7.fhir.r5.conformance.ProfileUtilities;
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import org.hl7.fhir.r5.context.BaseWorkerContext.MetadataResourceVersionComparator;
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import org.hl7.fhir.r5.context.IWorkerContext.ILoggingService.LogCategory;
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import org.hl7.fhir.r5.context.TerminologyCache.CacheToken;
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import org.hl7.fhir.r5.model.BooleanType;
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@ -79,6 +82,7 @@ import org.hl7.fhir.utilities.OIDUtils;
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import org.hl7.fhir.utilities.TerminologyServiceOptions;
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import org.hl7.fhir.utilities.TranslationServices;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.VersionUtilities;
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import org.hl7.fhir.utilities.validation.ValidationMessage.IssueSeverity;
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import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
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@ -86,22 +90,52 @@ import com.google.gson.JsonObject;
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public abstract class BaseWorkerContext implements IWorkerContext {
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public class MetadataResourceVersionComparator<T extends MetadataResource> implements Comparator<T> {
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private List<T> list;
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public MetadataResourceVersionComparator(List<T> list) {
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this.list = list;
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}
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@Override
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public int compare(T arg1, T arg2) {
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String v1 = arg1.getVersion();
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String v2 = arg2.getVersion();
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if (v1 == null && v2 == null) {
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return Integer.compare(list.indexOf(arg1), list.indexOf(arg2)); // retain original order
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} else if (v1 == null) {
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return -1;
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} else if (v2 == null) {
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return 1;
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} else {
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String mm1 = VersionUtilities.getMajMin(v1);
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String mm2 = VersionUtilities.getMajMin(v2);
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if (mm1 == null || mm2 == null) {
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return v1.compareTo(v2);
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} else {
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return mm1.compareTo(mm2);
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}
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}
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}
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}
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private Object lock = new Object(); // used as a lock for the data that follows
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private Map<String, Map<String, Resource>> allResourcesById = new HashMap<String, Map<String, Resource>>();
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// all maps are to the full URI
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private Map<String, CodeSystem> codeSystems = new HashMap<String, CodeSystem>();
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private MetadataResourceManager<CodeSystem> codeSystems = new MetadataResourceManager<CodeSystem>();
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private Set<String> supportedCodeSystems = new HashSet<String>();
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private Map<String, ValueSet> valueSets = new HashMap<String, ValueSet>();
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private Map<String, ConceptMap> maps = new HashMap<String, ConceptMap>();
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protected Map<String, StructureMap> transforms = new HashMap<String, StructureMap>();
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private Map<String, StructureDefinition> structures = new HashMap<String, StructureDefinition>();
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private Map<String, ImplementationGuide> guides = new HashMap<String, ImplementationGuide>();
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private Map<String, CapabilityStatement> capstmts = new HashMap<String, CapabilityStatement>();
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private Map<String, SearchParameter> searchParameters = new HashMap<String, SearchParameter>();
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private Map<String, Questionnaire> questionnaires = new HashMap<String, Questionnaire>();
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private Map<String, OperationDefinition> operations = new HashMap<String, OperationDefinition>();
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private Map<String, PlanDefinition> plans = new HashMap<String, PlanDefinition>();
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private MetadataResourceManager<ValueSet> valueSets = new MetadataResourceManager<ValueSet>();
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private MetadataResourceManager<ConceptMap> maps = new MetadataResourceManager<ConceptMap>();
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protected MetadataResourceManager<StructureMap> transforms = new MetadataResourceManager<StructureMap>();
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private MetadataResourceManager<StructureDefinition> structures = new MetadataResourceManager<StructureDefinition>();
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private MetadataResourceManager<ImplementationGuide> guides = new MetadataResourceManager<ImplementationGuide>();
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private MetadataResourceManager<CapabilityStatement> capstmts = new MetadataResourceManager<CapabilityStatement>();
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private MetadataResourceManager<SearchParameter> searchParameters = new MetadataResourceManager<SearchParameter>();
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private MetadataResourceManager<Questionnaire> questionnaires = new MetadataResourceManager<Questionnaire>();
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private MetadataResourceManager<OperationDefinition> operations = new MetadataResourceManager<OperationDefinition>();
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private MetadataResourceManager<PlanDefinition> plans = new MetadataResourceManager<PlanDefinition>();
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private List<NamingSystem> systems = new ArrayList<NamingSystem>();
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private UcumService ucumService;
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@ -128,7 +162,8 @@ public abstract class BaseWorkerContext implements IWorkerContext {
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txCache = new TerminologyCache(lock, null);
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}
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public BaseWorkerContext(Map<String, CodeSystem> codeSystems, Map<String, ValueSet> valueSets, Map<String, ConceptMap> maps, Map<String, StructureDefinition> profiles, Map<String, ImplementationGuide> guides) throws FileNotFoundException, IOException, FHIRException {
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public BaseWorkerContext(MetadataResourceManager<CodeSystem> codeSystems, MetadataResourceManager<ValueSet> valueSets, MetadataResourceManager<ConceptMap> maps, MetadataResourceManager<StructureDefinition> profiles,
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MetadataResourceManager<ImplementationGuide> guides) throws FileNotFoundException, IOException, FHIRException {
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super();
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this.codeSystems = codeSystems;
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this.valueSets = valueSets;
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@ -142,19 +177,19 @@ public abstract class BaseWorkerContext implements IWorkerContext {
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synchronized (other.lock) { // tricky, because you need to lock this as well, but it's really not in use yet
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allResourcesById.putAll(other.allResourcesById);
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translator = other.translator;
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codeSystems.putAll(other.codeSystems);
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codeSystems.copy(other.codeSystems);
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txcaps = other.txcaps;
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valueSets.putAll(other.valueSets);
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maps.putAll(other.maps);
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transforms.putAll(other.transforms);
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structures.putAll(other.structures);
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searchParameters.putAll(other.searchParameters);
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plans.putAll(other.plans);
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questionnaires.putAll(other.questionnaires);
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operations.putAll(other.operations);
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valueSets.copy(other.valueSets);
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maps.copy(other.maps);
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transforms.copy(other.transforms);
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structures.copy(other.structures);
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searchParameters.copy(other.searchParameters);
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plans.copy(other.plans);
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questionnaires.copy(other.questionnaires);
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operations.copy(other.operations);
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systems.addAll(other.systems);
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guides.putAll(other.guides);
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capstmts.putAll(other.capstmts);
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guides.copy(other.guides);
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capstmts.copy(other.capstmts);
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allowLoadingDuplicates = other.allowLoadingDuplicates;
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tsServer = other.tsServer;
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@ -187,27 +222,27 @@ public abstract class BaseWorkerContext implements IWorkerContext {
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if (!allowLoadingDuplicates && hasResource(r.getClass(), url))
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throw new DefinitionException("Duplicate Resource " + url);
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if (r instanceof StructureDefinition)
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seeMetadataResource((StructureDefinition) m, structures, false);
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structures.see((StructureDefinition) m);
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else if (r instanceof ValueSet)
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seeMetadataResource((ValueSet) m, valueSets, false);
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valueSets.see((ValueSet) m);
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else if (r instanceof CodeSystem)
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seeMetadataResource((CodeSystem) m, codeSystems, false);
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codeSystems.see((CodeSystem) m);
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else if (r instanceof ImplementationGuide)
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seeMetadataResource((ImplementationGuide) m, guides, false);
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guides.see((ImplementationGuide) m);
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else if (r instanceof CapabilityStatement)
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seeMetadataResource((CapabilityStatement) m, capstmts, false);
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capstmts.see((CapabilityStatement) m);
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else if (r instanceof SearchParameter)
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seeMetadataResource((SearchParameter) m, searchParameters, false);
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searchParameters.see((SearchParameter) m);
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else if (r instanceof PlanDefinition)
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seeMetadataResource((PlanDefinition) m, plans, false);
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plans.see((PlanDefinition) m);
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else if (r instanceof OperationDefinition)
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seeMetadataResource((OperationDefinition) m, operations, false);
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operations.see((OperationDefinition) m);
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else if (r instanceof Questionnaire)
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seeMetadataResource((Questionnaire) m, questionnaires, true);
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questionnaires.see((Questionnaire) m);
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else if (r instanceof ConceptMap)
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seeMetadataResource((ConceptMap) m, maps, false);
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maps.see((ConceptMap) m);
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else if (r instanceof StructureMap)
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seeMetadataResource((StructureMap) m, transforms, false);
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transforms.see((StructureMap) m);
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else if (r instanceof NamingSystem)
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systems.add((NamingSystem) r);
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}
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@ -261,26 +296,38 @@ public abstract class BaseWorkerContext implements IWorkerContext {
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throw new Error("Delimited versions have exact match for delimiter '"+delimiter+"' : "+newParts+" vs "+oldParts);
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}
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protected <T extends MetadataResource> void seeMetadataResource(T r, Map<String, T> map, boolean addId) throws FHIRException {
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if (addId)
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map.put(r.getId(), r); // todo: why?
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if (!map.containsKey(r.getUrl()))
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map.put(r.getUrl(), r);
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else {
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// If this resource already exists, see if it's the newest business version. The default resource to return if not qualified is the most recent business version
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MetadataResource existingResource = (MetadataResource)map.get(r.getUrl());
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if (r.hasVersion() && existingResource.hasVersion() && !r.getVersion().equals(existingResource.getVersion())) {
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if (laterVersion(r.getVersion(), existingResource.getVersion())) {
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map.remove(r.getUrl());
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map.put(r.getUrl(), r);
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}
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} else
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map.remove(r.getUrl());
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protected <T extends MetadataResource> void seeMetadataResource(T r, Map<String, T> map, List<T> list, boolean addId) throws FHIRException {
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// if (addId)
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// map.put(r.getId(), r); // todo: why?
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list.add(r);
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if (r.hasUrl()) {
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// first, this is the correct reosurce for this version (if it has a version)
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if (r.hasVersion()) {
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map.put(r.getUrl()+"|"+r.getVersion(), r);
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}
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// if we haven't get anything for this url, it's the correct version
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if (!map.containsKey(r.getUrl()))
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map.put(r.getUrl(), r);
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// throw new FHIRException("Multiple declarations of resource with same canonical URL (" + r.getUrl() + ") and version (" + (r.hasVersion() ? r.getVersion() : "" ) + ")");
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else {
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List<T> rl = new ArrayList<T>();
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for (T t : list) {
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if (t.getUrl().equals(r.getUrl()) && !rl.contains(t)) {
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rl.add(t);
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}
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}
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Collections.sort(rl, new MetadataResourceVersionComparator<T>(list));
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map.put(r.getUrl(), rl.get(rl.size()-1));
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T latest = null;
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for (T t : rl) {
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if (VersionUtilities.versionsCompatible(t.getVersion(), r.getVersion())) {
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latest = t;
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}
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}
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if (latest != null) { // might be null if it's not using semver
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map.put(r.getUrl()+"|"+VersionUtilities.getMajMin(latest.getVersion()), rl.get(rl.size()-1));
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}
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}
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}
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if (r.hasVersion())
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map.put(r.getUrl()+"|"+r.getVersion(), r);
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}
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@Override
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@ -293,7 +340,7 @@ public abstract class BaseWorkerContext implements IWorkerContext {
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@Override
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public boolean supportsSystem(String system) throws TerminologyServiceException {
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synchronized (lock) {
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if (codeSystems.containsKey(system) && codeSystems.get(system).getContent() != CodeSystemContentMode.NOTPRESENT)
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if (codeSystems.has(system) && codeSystems.get(system).getContent() != CodeSystemContentMode.NOTPRESENT)
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return true;
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else if (supportedCodeSystems.contains(system))
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return true;
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@ -635,7 +682,7 @@ public abstract class BaseWorkerContext implements IWorkerContext {
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public List<ConceptMap> findMapsForSource(String url) throws FHIRException {
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synchronized (lock) {
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List<ConceptMap> res = new ArrayList<ConceptMap>();
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for (ConceptMap map : maps.values())
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for (ConceptMap map : maps.getList())
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if (((Reference) map.getSource()).getReference().equals(url))
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res.add(map);
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return res;
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@ -706,27 +753,27 @@ public abstract class BaseWorkerContext implements IWorkerContext {
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if (uri.contains("#"))
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uri = uri.substring(0, uri.indexOf("#"));
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if (class_ == Resource.class || class_ == null) {
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if (structures.containsKey(uri))
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if (structures.has(uri))
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return (T) structures.get(uri);
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if (guides.containsKey(uri))
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if (guides.has(uri))
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return (T) guides.get(uri);
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if (capstmts.containsKey(uri))
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if (capstmts.has(uri))
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return (T) capstmts.get(uri);
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if (valueSets.containsKey(uri))
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if (valueSets.has(uri))
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return (T) valueSets.get(uri);
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if (codeSystems.containsKey(uri))
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if (codeSystems.has(uri))
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return (T) codeSystems.get(uri);
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if (operations.containsKey(uri))
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if (operations.has(uri))
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return (T) operations.get(uri);
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if (searchParameters.containsKey(uri))
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if (searchParameters.has(uri))
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return (T) searchParameters.get(uri);
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if (plans.containsKey(uri))
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if (plans.has(uri))
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return (T) plans.get(uri);
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if (maps.containsKey(uri))
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if (maps.has(uri))
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return (T) maps.get(uri);
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if (transforms.containsKey(uri))
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if (transforms.has(uri))
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return (T) transforms.get(uri);
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if (questionnaires.containsKey(uri))
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if (questionnaires.has(uri))
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return (T) questionnaires.get(uri);
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for (Map<String, Resource> rt : allResourcesById.values()) {
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for (Resource r : rt.values()) {
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@ -747,13 +794,13 @@ public abstract class BaseWorkerContext implements IWorkerContext {
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} else if (class_ == StructureMap.class) {
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return (T) transforms.get(uri);
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} else if (class_ == ValueSet.class) {
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if (valueSets.containsKey(uri+"|"+version))
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return (T) valueSets.get(uri+"|"+version);
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if (valueSets.has(uri, version))
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return (T) valueSets.get(uri, version);
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else
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return (T) valueSets.get(uri);
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} else if (class_ == CodeSystem.class) {
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if (codeSystems.containsKey(uri+"|"+version))
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return (T) codeSystems.get(uri+"|"+version);
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if (codeSystems.has(uri, version))
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return (T) codeSystems.get(uri, version);
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else
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return (T) codeSystems.get(uri);
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} else if (class_ == ConceptMap.class) {
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@ -765,17 +812,10 @@ public abstract class BaseWorkerContext implements IWorkerContext {
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return (T) od;
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} else if (class_ == SearchParameter.class) {
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SearchParameter res = searchParameters.get(uri);
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if (res == null) {
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StringBuilder b = new StringBuilder();
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for (String s : searchParameters.keySet()) {
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b.append(s);
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b.append("\r\n");
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}
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}
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return (T) res;
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}
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}
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if (class_ == CodeSystem.class && codeSystems.containsKey(uri))
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if (class_ == CodeSystem.class && codeSystems.has(uri))
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return (T) codeSystems.get(uri);
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if (class_ == Questionnaire.class)
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@ -943,23 +983,23 @@ public abstract class BaseWorkerContext implements IWorkerContext {
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map.remove(id);
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if (fhirType.equals("StructureDefinition"))
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dropMetadataResource(structures, id);
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structures.drop(id);
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else if (fhirType.equals("ImplementationGuide"))
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dropMetadataResource(guides, id);
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guides.drop(id);
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else if (fhirType.equals("CapabilityStatement"))
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dropMetadataResource(capstmts, id);
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capstmts.drop(id);
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else if (fhirType.equals("ValueSet"))
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dropMetadataResource(valueSets, id);
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valueSets.drop(id);
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else if (fhirType.equals("CodeSystem"))
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dropMetadataResource(codeSystems, id);
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codeSystems.drop(id);
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else if (fhirType.equals("OperationDefinition"))
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dropMetadataResource(operations, id);
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operations.drop(id);
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else if (fhirType.equals("Questionnaire"))
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dropMetadataResource(questionnaires, id);
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questionnaires.drop(id);
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else if (fhirType.equals("ConceptMap"))
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dropMetadataResource(maps, id);
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maps.drop(id);
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else if (fhirType.equals("StructureMap"))
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dropMetadataResource(transforms, id);
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transforms.drop(id);
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else if (fhirType.equals("NamingSystem"))
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for (int i = systems.size()-1; i >= 0; i--) {
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if (systems.get(i).getId().equals(id))
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@ -984,15 +1024,15 @@ public abstract class BaseWorkerContext implements IWorkerContext {
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public List<MetadataResource> allConformanceResources() {
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synchronized (lock) {
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List<MetadataResource> result = new ArrayList<MetadataResource>();
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result.addAll(structures.values());
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result.addAll(guides.values());
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result.addAll(capstmts.values());
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result.addAll(codeSystems.values());
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result.addAll(valueSets.values());
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result.addAll(maps.values());
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result.addAll(transforms.values());
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result.addAll(plans.values());
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result.addAll(questionnaires.values());
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structures.listAllM(result);
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guides.listAllM(result);
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capstmts.listAllM(result);
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codeSystems.listAllM(result);
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valueSets.listAllM(result);
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maps.listAllM(result);
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transforms.listAllM(result);
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plans.listAllM(result);
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questionnaires.listAllM(result);
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return result;
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}
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}
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@ -1016,7 +1056,7 @@ public abstract class BaseWorkerContext implements IWorkerContext {
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public List<ConceptMap> listMaps() {
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List<ConceptMap> m = new ArrayList<ConceptMap>();
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synchronized (lock) {
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m.addAll(maps.values());
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maps.listAll(m);
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}
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return m;
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}
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@ -1024,7 +1064,7 @@ public abstract class BaseWorkerContext implements IWorkerContext {
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public List<StructureMap> listTransforms() {
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List<StructureMap> m = new ArrayList<StructureMap>();
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synchronized (lock) {
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||||
m.addAll(transforms.values());
|
||||
transforms.listAll(m);
|
||||
}
|
||||
return m;
|
||||
}
|
||||
|
|
@ -1038,7 +1078,7 @@ public abstract class BaseWorkerContext implements IWorkerContext {
|
|||
public List<StructureDefinition> listStructures() {
|
||||
List<StructureDefinition> m = new ArrayList<StructureDefinition>();
|
||||
synchronized (lock) {
|
||||
m.addAll(structures.values());
|
||||
structures.listAll(m);
|
||||
}
|
||||
return m;
|
||||
}
|
||||
|
|
@ -1138,55 +1178,44 @@ public abstract class BaseWorkerContext implements IWorkerContext {
|
|||
public List<StructureDefinition> getStructures() {
|
||||
List<StructureDefinition> res = new ArrayList<>();
|
||||
synchronized (lock) { // tricky, because you need to lock this as well, but it's really not in use yet
|
||||
res.addAll(structures.values());
|
||||
structures.listAll(res);
|
||||
}
|
||||
return res;
|
||||
}
|
||||
|
||||
public String getLinkForUrl(String corePath, String url) {
|
||||
for (CodeSystem r : codeSystems.values())
|
||||
if (url.equals(r.getUrl()))
|
||||
return r.getUserString("path");
|
||||
if (codeSystems.has(url))
|
||||
return codeSystems.get(url).getUserString("path");
|
||||
|
||||
for (ValueSet r : valueSets.values())
|
||||
if (url.equals(r.getUrl()))
|
||||
return r.getUserString("path");
|
||||
if (valueSets.has(url))
|
||||
return valueSets.get(url).getUserString("path");
|
||||
|
||||
if (maps.has(url))
|
||||
return maps.get(url).getUserString("path");
|
||||
|
||||
for (ConceptMap r : maps.values())
|
||||
if (url.equals(r.getUrl()))
|
||||
return r.getUserString("path");
|
||||
if (transforms.has(url))
|
||||
return transforms.get(url).getUserString("path");
|
||||
|
||||
for (StructureMap r : transforms.values())
|
||||
if (url.equals(r.getUrl()))
|
||||
return r.getUserString("path");
|
||||
if (structures.has(url))
|
||||
return structures.get(url).getUserString("path");
|
||||
|
||||
for (StructureDefinition r : structures.values())
|
||||
if (url.equals(r.getUrl()))
|
||||
return r.getUserString("path");
|
||||
if (guides.has(url))
|
||||
return guides.get(url).getUserString("path");
|
||||
|
||||
for (ImplementationGuide r : guides.values())
|
||||
if (url.equals(r.getUrl()))
|
||||
return r.getUserString("path");
|
||||
if (capstmts.has(url))
|
||||
return capstmts.get(url).getUserString("path");
|
||||
|
||||
if (searchParameters.has(url))
|
||||
return searchParameters.get(url).getUserString("path");
|
||||
|
||||
if (questionnaires.has(url))
|
||||
return questionnaires.get(url).getUserString("path");
|
||||
|
||||
if (operations.has(url))
|
||||
return operations.get(url).getUserString("path");
|
||||
|
||||
for (CapabilityStatement r : capstmts.values())
|
||||
if (url.equals(r.getUrl()))
|
||||
return r.getUserString("path");
|
||||
|
||||
for (SearchParameter r : searchParameters.values())
|
||||
if (url.equals(r.getUrl()))
|
||||
return r.getUserString("path");
|
||||
|
||||
for (Questionnaire r : questionnaires.values())
|
||||
if (url.equals(r.getUrl()))
|
||||
return r.getUserString("path");
|
||||
|
||||
for (OperationDefinition r : operations.values())
|
||||
if (url.equals(r.getUrl()))
|
||||
return r.getUserString("path");
|
||||
|
||||
for (PlanDefinition r : plans.values())
|
||||
if (url.equals(r.getUrl()))
|
||||
return r.getUserString("path");
|
||||
if (plans.has(url))
|
||||
return plans.get(url).getUserString("path");
|
||||
|
||||
if (url.equals("http://loinc.org"))
|
||||
return corePath+"loinc.html";
|
||||
|
|
@ -1201,7 +1230,7 @@ public abstract class BaseWorkerContext implements IWorkerContext {
|
|||
|
||||
public List<ImplementationGuide> allImplementationGuides() {
|
||||
List<ImplementationGuide> res = new ArrayList<>();
|
||||
res.addAll(guides.values());
|
||||
guides.listAll(res);
|
||||
return res;
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -0,0 +1,180 @@
|
|||
package org.hl7.fhir.r5.context;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.Collections;
|
||||
import java.util.Comparator;
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.UUID;
|
||||
|
||||
import org.hl7.fhir.r5.context.BaseWorkerContext.MetadataResourceVersionComparator;
|
||||
import org.hl7.fhir.r5.model.CodeSystem;
|
||||
import org.hl7.fhir.r5.model.MetadataResource;
|
||||
import org.hl7.fhir.utilities.VersionUtilities;
|
||||
|
||||
/**
|
||||
* This manages a cached list of resources, and provides high speed access by URL / URL+version, and assumes that patch version doesn't matter for access
|
||||
* note, though, that not all resources have semver versions
|
||||
*
|
||||
* @author graha
|
||||
*
|
||||
*/
|
||||
|
||||
public class MetadataResourceManager<T extends MetadataResource> {
|
||||
|
||||
public class MetadataResourceVersionComparator<T extends MetadataResource> implements Comparator<T> {
|
||||
@Override
|
||||
public int compare(T arg1, T arg2) {
|
||||
String v1 = arg1.getVersion();
|
||||
String v2 = arg2.getVersion();
|
||||
if (v1 == null && v2 == null) {
|
||||
return Integer.compare(list.indexOf(arg1), list.indexOf(arg2)); // retain original order
|
||||
} else if (v1 == null) {
|
||||
return -1;
|
||||
} else if (v2 == null) {
|
||||
return 1;
|
||||
} else {
|
||||
String mm1 = VersionUtilities.getMajMin(v1);
|
||||
String mm2 = VersionUtilities.getMajMin(v2);
|
||||
if (mm1 == null || mm2 == null) {
|
||||
return v1.compareTo(v2);
|
||||
} else {
|
||||
return mm1.compareTo(mm2);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private List<T> list = new ArrayList<>();
|
||||
private Map<String, T> map = new HashMap<>();
|
||||
|
||||
public void copy(MetadataResourceManager<T> source) {
|
||||
list.clear();
|
||||
map.clear();
|
||||
list.addAll(source.list);
|
||||
map.putAll(source.map);
|
||||
}
|
||||
|
||||
public void see(T r) {
|
||||
if (!r.hasId()) {
|
||||
r.setId(UUID.randomUUID().toString());
|
||||
}
|
||||
if (map.containsKey(r.getId())) {
|
||||
drop(r.getId());
|
||||
}
|
||||
list.add(r);
|
||||
map.put(r.getId(), r); // we do this so we can drop by id
|
||||
|
||||
if (r.hasUrl()) {
|
||||
// first, this is the correct reosurce for this version (if it has a version)
|
||||
if (r.hasVersion()) {
|
||||
map.put(r.getUrl()+"|"+r.getVersion(), r);
|
||||
}
|
||||
updateList(r.getUrl(), r.getVersion());
|
||||
}
|
||||
}
|
||||
|
||||
private void updateList(String url, String version) {
|
||||
List<T> rl = new ArrayList<T>();
|
||||
for (T t : list) {
|
||||
if (url.equals(t.getUrl()) && !rl.contains(t)) {
|
||||
rl.add(t);
|
||||
}
|
||||
}
|
||||
if (rl.size() > 0) {
|
||||
// sort by version as much as we are able
|
||||
Collections.sort(rl, new MetadataResourceVersionComparator<T>());
|
||||
// the current is the latest
|
||||
map.put(url, rl.get(rl.size()-1));
|
||||
// now, also, the latest for major/minor
|
||||
if (version != null) {
|
||||
T latest = null;
|
||||
for (T t : rl) {
|
||||
if (VersionUtilities.versionsCompatible(t.getVersion(), version)) {
|
||||
latest = t;
|
||||
}
|
||||
}
|
||||
if (latest != null) { // might be null if it's not using semver
|
||||
map.put(url+"|"+VersionUtilities.getMajMin(latest.getVersion()), rl.get(rl.size()-1));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
public T get(String url) {
|
||||
return map.get(url);
|
||||
}
|
||||
|
||||
public boolean has(String url) {
|
||||
return map.containsKey(url);
|
||||
}
|
||||
|
||||
public T get(String system, String version) {
|
||||
if (map.containsKey(system+"|"+version))
|
||||
return map.get(system+"|"+version);
|
||||
String mm = VersionUtilities.getMajMin(version);
|
||||
if (mm != null)
|
||||
return map.get(system+"|"+mm);
|
||||
else
|
||||
return null;
|
||||
}
|
||||
|
||||
public boolean has(String system, String version) {
|
||||
if (map.containsKey(system+"|"+version))
|
||||
return true;
|
||||
String mm = VersionUtilities.getMajMin(version);
|
||||
if (mm != null)
|
||||
return map.containsKey(system+"|"+mm);
|
||||
else
|
||||
return false;
|
||||
}
|
||||
|
||||
public int size() {
|
||||
return list.size();
|
||||
}
|
||||
|
||||
public void drop(String id) {
|
||||
T res = map.get(id);
|
||||
if (res != null) {
|
||||
list.remove(res);
|
||||
map.remove(id);
|
||||
map.remove(res.getUrl());
|
||||
if (res.hasVersion()) {
|
||||
map.remove(res.getUrl()+"|"+res.getVersion());
|
||||
String mm = VersionUtilities.getMajMin(res.getVersion());
|
||||
if (mm != null) {
|
||||
map.remove(res.getUrl()+"|"+mm);
|
||||
}
|
||||
}
|
||||
updateList(res.getUrl(), res.getVersion());
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
public void listAll(List<T> result) {
|
||||
result.addAll(list);
|
||||
}
|
||||
|
||||
public void listAllM(List<MetadataResource> result) {
|
||||
result.addAll(list);
|
||||
}
|
||||
|
||||
public void clear() {
|
||||
list.clear();
|
||||
map.clear();
|
||||
|
||||
}
|
||||
|
||||
public List<T> getList() {
|
||||
return list;
|
||||
}
|
||||
|
||||
public Set<String> keys() {
|
||||
return map.keySet();
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -608,7 +608,7 @@ public class SimpleWorkerContext extends BaseWorkerContext implements IWorkerCon
|
|||
}
|
||||
|
||||
public String listMapUrls() {
|
||||
return Utilities.listCanonicalUrls(transforms.keySet());
|
||||
return Utilities.listCanonicalUrls(transforms.keys());
|
||||
}
|
||||
|
||||
|
||||
|
|
|
|||
|
|
@ -19,6 +19,7 @@ import org.junit.runners.Suite.SuiteClasses;
|
|||
ShexGeneratorTests.class,
|
||||
BaseDateTimeTypeTest.class,
|
||||
OpenApiGeneratorTest.class,
|
||||
MetadataResourceManagerTester.class,
|
||||
SnapShotGenerationTests.class})
|
||||
|
||||
public class AllR5Tests {
|
||||
|
|
|
|||
|
|
@ -0,0 +1,226 @@
|
|||
package org.hl7.fhir.r5.test;
|
||||
|
||||
import static org.junit.Assert.*;
|
||||
|
||||
import org.hl7.fhir.r5.context.MetadataResourceManager;
|
||||
import org.hl7.fhir.r5.model.CodeSystem;
|
||||
import org.hl7.fhir.r5.model.ValueSet;
|
||||
import org.junit.Assert;
|
||||
import org.junit.Test;
|
||||
|
||||
public class MetadataResourceManagerTester {
|
||||
|
||||
private MetadataResourceManager<ValueSet> mrm = new MetadataResourceManager<>();
|
||||
|
||||
@Test
|
||||
public void testSingleNoVersion() {
|
||||
ValueSet vs = new ValueSet();
|
||||
vs.setId("2345");
|
||||
vs.setUrl("http://url/ValueSet/234");
|
||||
// no version
|
||||
|
||||
mrm.clear();
|
||||
mrm.see(vs);
|
||||
|
||||
Assert.assertEquals(mrm.size(), 1);
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234"));
|
||||
Assert.assertNotNull(mrm.get("2345"));
|
||||
Assert.assertNull(mrm.get("http://url/ValueSet/234", "4.0.0"));
|
||||
mrm.see(vs);
|
||||
Assert.assertEquals(mrm.size(), 1);
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234"));
|
||||
Assert.assertNotNull(mrm.get("2345"));
|
||||
Assert.assertNull(mrm.get("http://url/ValueSet/234", "4.0.0"));
|
||||
|
||||
mrm.drop("2344");
|
||||
Assert.assertEquals(mrm.size(), 1);
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234"));
|
||||
Assert.assertNotNull(mrm.get("2345"));
|
||||
Assert.assertNull(mrm.get("http://url/ValueSet/234", "4.0.0"));
|
||||
|
||||
mrm.drop("2345");
|
||||
Assert.assertEquals(mrm.size(), 0);
|
||||
Assert.assertNull(mrm.get("http://url/ValueSet/234"));
|
||||
Assert.assertNull(mrm.get("2345"));
|
||||
Assert.assertNull(mrm.get("http://url/ValueSet/234", "4.0.0"));
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSingleWithVersion() {
|
||||
ValueSet vs = new ValueSet();
|
||||
vs.setId("2345");
|
||||
vs.setUrl("http://url/ValueSet/234");
|
||||
vs.setVersion("4.0.1");
|
||||
|
||||
mrm.clear();
|
||||
mrm.see(vs);
|
||||
|
||||
Assert.assertNotNull(mrm.get("2345"));
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234"));
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.0"));
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.1"));
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.2"));
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0"));
|
||||
Assert.assertNull(mrm.get("http://url/ValueSet/234", "4.1"));
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSingleWithVersionNotSemVer() {
|
||||
ValueSet vs = new ValueSet();
|
||||
vs.setId("2345");
|
||||
vs.setUrl("http://url/ValueSet/234");
|
||||
vs.setVersion("20140403");
|
||||
|
||||
mrm.clear();
|
||||
mrm.see(vs);
|
||||
|
||||
Assert.assertNotNull(mrm.get("2345"));
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234"));
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "20140403"));
|
||||
Assert.assertNull(mrm.get("http://url/ValueSet/234", "20140402"));
|
||||
Assert.assertNull(mrm.get("http://url/ValueSet/234", "2014"));
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSingleWithVersions1() {
|
||||
ValueSet vs1 = new ValueSet();
|
||||
vs1.setId("2345");
|
||||
vs1.setUrl("http://url/ValueSet/234");
|
||||
vs1.setVersion("4.0.1");
|
||||
vs1.setName("1");
|
||||
|
||||
ValueSet vs2 = new ValueSet();
|
||||
vs2.setId("2346");
|
||||
vs2.setUrl("http://url/ValueSet/234");
|
||||
vs2.setVersion("4.0.2");
|
||||
vs2.setName("2");
|
||||
|
||||
mrm.clear();
|
||||
mrm.see(vs1);
|
||||
|
||||
Assert.assertEquals(mrm.size(), 1);
|
||||
Assert.assertNotNull(mrm.get("2345"));
|
||||
Assert.assertEquals(mrm.get("2345").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.0"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.0").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.1"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.1").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.2"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.2").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0").getName(), "1");
|
||||
Assert.assertNull(mrm.get("http://url/ValueSet/234", "4.1"));
|
||||
|
||||
mrm.see(vs2);
|
||||
|
||||
Assert.assertEquals(mrm.size(), 2);
|
||||
Assert.assertNotNull(mrm.get("2345"));
|
||||
Assert.assertEquals(mrm.get("2345").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("2346"));
|
||||
Assert.assertEquals(mrm.get("2346").getName(), "2");
|
||||
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234").getName(), "2");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.0"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.0").getName(), "2");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.1"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.1").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.2"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.2").getName(), "2");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0").getName(), "2");
|
||||
Assert.assertNull(mrm.get("http://url/ValueSet/234", "4.1"));
|
||||
|
||||
mrm.drop("2346"); // vs2;
|
||||
Assert.assertEquals(mrm.size(), 1);
|
||||
Assert.assertNotNull(mrm.get("2345"));
|
||||
Assert.assertNull(mrm.get("2346"));
|
||||
Assert.assertEquals(mrm.get("2345").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.0"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.0").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.1"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.1").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.2"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.2").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0").getName(), "1");
|
||||
Assert.assertNull(mrm.get("http://url/ValueSet/234", "4.1"));
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSingleWithVersions2() {
|
||||
ValueSet vs1 = new ValueSet();
|
||||
vs1.setId("2345");
|
||||
vs1.setUrl("http://url/ValueSet/234");
|
||||
vs1.setVersion("4.0.1");
|
||||
vs1.setName("1");
|
||||
|
||||
ValueSet vs2 = new ValueSet();
|
||||
vs2.setId("2346");
|
||||
vs2.setUrl("http://url/ValueSet/234");
|
||||
vs2.setVersion("4.0.2");
|
||||
vs2.setName("2");
|
||||
|
||||
mrm.clear();
|
||||
mrm.see(vs1);
|
||||
|
||||
Assert.assertEquals(mrm.size(), 1);
|
||||
Assert.assertNotNull(mrm.get("2345"));
|
||||
Assert.assertEquals(mrm.get("2345").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.0"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.0").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.1"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.1").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.2"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.2").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0").getName(), "1");
|
||||
Assert.assertNull(mrm.get("http://url/ValueSet/234", "4.1"));
|
||||
|
||||
mrm.see(vs2);
|
||||
|
||||
Assert.assertEquals(mrm.size(), 2);
|
||||
Assert.assertNotNull(mrm.get("2345"));
|
||||
Assert.assertEquals(mrm.get("2345").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("2346"));
|
||||
Assert.assertEquals(mrm.get("2346").getName(), "2");
|
||||
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234").getName(), "2");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.0"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.0").getName(), "2");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.1"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.1").getName(), "1");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.2"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.2").getName(), "2");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0").getName(), "2");
|
||||
Assert.assertNull(mrm.get("http://url/ValueSet/234", "4.1"));
|
||||
|
||||
mrm.drop("2345"); // vs1;
|
||||
Assert.assertEquals(mrm.size(), 1);
|
||||
Assert.assertNull(mrm.get("2345"));
|
||||
Assert.assertNotNull(mrm.get("2346"));
|
||||
Assert.assertEquals(mrm.get("2346").getName(), "2");
|
||||
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234").getName(), "2");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.0"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.0").getName(), "2");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.1"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.1").getName(), "2");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0.2"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0.2").getName(), "2");
|
||||
Assert.assertNotNull(mrm.get("http://url/ValueSet/234", "4.0"));
|
||||
Assert.assertEquals(mrm.get("http://url/ValueSet/234", "4.0").getName(), "2");
|
||||
Assert.assertNull(mrm.get("http://url/ValueSet/234", "4.1"));
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -115,7 +115,13 @@ public class VersionUtilities {
|
|||
}
|
||||
|
||||
public static boolean versionsCompatible(String v1, String v2) {
|
||||
return v1.substring(0, 3).equals(v2.substring(0, 3));
|
||||
String mm1 = getMajMin(v1);
|
||||
String mm2 = getMajMin(v2);
|
||||
if (mm1 == null || mm2 == null) {
|
||||
return false;
|
||||
} else {
|
||||
return mm1.equals(mm2);
|
||||
}
|
||||
}
|
||||
|
||||
public static boolean isCorePackage(String s) {
|
||||
|
|
@ -125,4 +131,16 @@ public class VersionUtilities {
|
|||
return Utilities.existsInList(s, "hl7.fhir.core","hl7.fhir.r2.core", "hl7.fhir.r2b.core", "hl7.fhir.r3.core", "hl7.fhir.r4.core");
|
||||
}
|
||||
|
||||
public static String getMajMin(String version) {
|
||||
if (version == null)
|
||||
return null;
|
||||
|
||||
if (Utilities.charCount(version, '.') == 2) {
|
||||
String[] p = version.split("\\.");
|
||||
return p[0]+"."+p[1];
|
||||
} else {
|
||||
return null;
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
Loading…
Reference in New Issue