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Merge pull request #1796 from hapifhir/2024-11-gg-sweep 

2024 11 gg sweep
This commit is contained in:
Grahame Grieve 2024-11-01 15:55:06 +10:30 committed by GitHub
parent 0ebf628bec 90b6583ac5
commit 4d61317196
No known key found for this signature in database
GPG Key ID: B5690EEEBB952194
74 changed files with 17501 additions and 2874 deletions
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2
org.hl7.fhir.convertors/src/main/java/org/hl7/fhir/convertors/txClient/TerminologyClientFactory.java
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@ -45,7 +45,7 @@ public class TerminologyClientFactory implements ITerminologyClientFactory {
return new TerminologyClientR4(id, checkEndsWith("/r4", url), userAgent).setLogger(logger);
}
if (VersionUtilities.isR5Plus(v)) {
return new TerminologyClientR5(id, checkEndsWith("/r4", url), userAgent).setLogger(logger); // r4 for now, since the terminology is currently the same
return new TerminologyClientR5(id, checkEndsWith("/r5", url), userAgent).setLogger(logger); // r4 for now, since the terminology is currently the same
}
throw new Error("The version " + v + " is not currently supported");
}

2
org.hl7.fhir.convertors/src/test/java/org/hl7/fhir/convertors/txClient/TerminologyClientFactoryTest.java
View File

@ -29,7 +29,7 @@ public class TerminologyClientFactoryTest {
objects.addAll(getDefaultServerArgs("tx.fhir.org/r2", "tx.fhir.org", FhirPublication.DSTU2));
objects.addAll(getDefaultServerArgs("tx.fhir.org/r3", "tx.fhir.org", FhirPublication.DSTU2016May));
objects.addAll(getDefaultServerArgs("tx.fhir.org/r4", "tx.fhir.org", FhirPublication.R4B));
objects.addAll(getDefaultServerArgs("tx.fhir.org/r4", "tx.fhir.org", FhirPublication.R5));
objects.addAll(getDefaultServerArgs("tx.fhir.org/r5", "tx.fhir.org", FhirPublication.R5));
objects.addAll(getDefaultServerArgs("tx.fhir.org/r3", "tx.fhir.org", FhirPublication.STU3));
objects.addAll(getHttpAndHttpsArgs("someserver.org", FhirPublication.R4, "someserver.org"));
objects.addAll(getHttpAndHttpsArgs("someserver.org", null, "someserver.org"));

2
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/conformance/ProfileUtilities.java
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@ -282,6 +282,8 @@ public class ProfileUtilities extends TranslatingUtilities {
public String url;
}
public boolean isPrimitiveType(String typeSimple);
public boolean isDatatype(String typeSimple);
public boolean isResource(String typeSimple);

67
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/context/BaseWorkerContext.java
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@ -3,6 +3,7 @@ package org.hl7.fhir.r4.context;
import java.io.FileNotFoundException;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Date;
import java.util.HashMap;
import java.util.HashSet;
@ -57,6 +58,9 @@ import org.hl7.fhir.r4.terminologies.ValueSetExpander.TerminologyServiceErrorCla
import org.hl7.fhir.r4.terminologies.ValueSetExpander.ValueSetExpansionOutcome;
import org.hl7.fhir.r4.terminologies.ValueSetExpanderSimple;
import org.hl7.fhir.r4.utils.ToolingExtensions;
import org.hl7.fhir.r4.model.DomainResource;
import org.hl7.fhir.r4.model.Library;
import org.hl7.fhir.r4.model.Measure;
import org.hl7.fhir.utilities.OIDUtils;
import org.hl7.fhir.utilities.TranslationServices;
import org.hl7.fhir.utilities.Utilities;
@ -894,6 +898,22 @@ public abstract class BaseWorkerContext extends I18nBase implements IWorkerConte
}
}
@Override
public <T extends Resource> T fetchResource(Class<T> class_, String uri, Resource source) {
return fetchResource(class_, uri);
}
@Override
public List<StructureDefinition> fetchTypeDefinitions(String n) {
List<StructureDefinition> types = new ArrayList<>();
for (StructureDefinition sd : fetchResourcesByType(StructureDefinition.class)) {
if (n.equals(sd.getTypeTail())) {
types.add(sd);
}
}
return types;
}
public <T extends Resource> T fetchResource(Class<T> class_, String uri, String version) {
try {
return fetchResourceWithException(class_, uri+"|"+version);
@ -1250,4 +1270,51 @@ public abstract class BaseWorkerContext extends I18nBase implements IWorkerConte
return corePath + "snomed.html";
return null;
}
@SuppressWarnings("unchecked")
public <T extends Resource> List<T> fetchResourcesByType(Class<T> class_) {
List<T> res = new ArrayList<>();
synchronized (lock) {
if (class_ == Resource.class || class_ == DomainResource.class || class_ == null) {
res.addAll((Collection<T>) structures.values());
res.addAll((Collection<T>) guides.values());
res.addAll((Collection<T>) capstmts.values());
res.addAll((Collection<T>) valueSets.values());
res.addAll((Collection<T>) codeSystems.values());
res.addAll((Collection<T>) operations.values());
res.addAll((Collection<T>) searchParameters.values());
res.addAll((Collection<T>) plans.values());
res.addAll((Collection<T>) maps.values());
res.addAll((Collection<T>) transforms.values());
res.addAll((Collection<T>) questionnaires.values());
} else if (class_ == ImplementationGuide.class) {
res.addAll((Collection<T>) guides.values());
} else if (class_ == CapabilityStatement.class) {
res.addAll((Collection<T>) capstmts.values());
} else if (class_ == StructureDefinition.class) {
res.addAll((Collection<T>) structures.values());
} else if (class_ == StructureMap.class) {
res.addAll((Collection<T>) transforms.values());
} else if (class_ == ValueSet.class) {
res.addAll((Collection<T>) valueSets.values());
} else if (class_ == CodeSystem.class) {
res.addAll((Collection<T>) codeSystems.values());
} else if (class_ == ConceptMap.class) {
res.addAll((Collection<T>) maps.values());
} else if (class_ == PlanDefinition.class) {
res.addAll((Collection<T>) plans.values());
} else if (class_ == OperationDefinition.class) {
res.addAll((Collection<T>) operations.values());
} else if (class_ == Questionnaire.class) {
res.addAll((Collection<T>) questionnaires.values());
} else if (class_ == SearchParameter.class) {
res.addAll((Collection<T>) searchParameters.values());
}
}
return res;
}
}

461
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/context/ContextUtilities.java Normal file
View File

@ -0,0 +1,461 @@
package org.hl7.fhir.r4.context;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Collections;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import org.hl7.fhir.exceptions.DefinitionException;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.r4.conformance.ProfileUtilities;
import org.hl7.fhir.r4.conformance.ProfileUtilities.ProfileKnowledgeProvider;
import org.hl7.fhir.r4.model.CodeSystem;
import org.hl7.fhir.r4.model.ElementDefinition;
import org.hl7.fhir.r4.model.CodeSystem.ConceptDefinitionComponent;
import org.hl7.fhir.r4.model.CodeSystem.ConceptPropertyComponent;
import org.hl7.fhir.r4.model.ElementDefinition.ElementDefinitionBindingComponent;
import org.hl7.fhir.r4.model.NamingSystem.NamingSystemIdentifierType;
import org.hl7.fhir.r4.model.NamingSystem.NamingSystemUniqueIdComponent;
import org.hl7.fhir.r4.model.Resource;
import org.hl7.fhir.r4.model.StructureDefinition.StructureDefinitionKind;
import org.hl7.fhir.r4.model.StructureDefinition.TypeDerivationRule;
import org.hl7.fhir.r4.model.StructureMap;
import org.hl7.fhir.r4.utils.ToolingExtensions;
import org.hl7.fhir.r4.model.Identifier;
import org.hl7.fhir.r4.model.NamingSystem;
import org.hl7.fhir.r4.model.StructureDefinition;
import org.hl7.fhir.utilities.OIDUtils;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.VersionUtilities;
import org.hl7.fhir.utilities.i18n.I18nConstants;
import org.hl7.fhir.utilities.validation.ValidationMessage;
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
public class ContextUtilities implements ProfileKnowledgeProvider {
private IWorkerContext context;
private boolean suppressDebugMessages;
private Map<String, String> oidCache = new HashMap<>();
private List<StructureDefinition> allStructuresList = new ArrayList<StructureDefinition>();
private List<String> canonicalResourceNames;
private List<String> concreteResourceNames;
private Set<String> concreteResourceNameSet;
public ContextUtilities(IWorkerContext context) {
super();
this.context = context;
}
public boolean isSuppressDebugMessages() {
return suppressDebugMessages;
}
public void setSuppressDebugMessages(boolean suppressDebugMessages) {
this.suppressDebugMessages = suppressDebugMessages;
}
public String oid2Uri(String oid) {
if (oid != null && oid.startsWith("urn:oid:")) {
oid = oid.substring(8);
}
if (oidCache.containsKey(oid)) {
return oidCache.get(oid);
}
String uri = OIDUtils.getUriForOid(oid);
if (uri != null) {
oidCache.put(oid, uri);
return uri;
}
CodeSystem cs = context.fetchCodeSystem("http://terminology.hl7.org/CodeSystem/v2-tables");
if (cs != null) {
for (ConceptDefinitionComponent cc : cs.getConcept()) {
for (ConceptPropertyComponent cp : cc.getProperty()) {
if (Utilities.existsInList(cp.getCode(), "v2-table-oid", "v2-cs-oid") && oid.equals(cp.getValue().primitiveValue())) {
for (ConceptPropertyComponent cp2 : cc.getProperty()) {
if ("v2-cs-uri".equals(cp2.getCode())) {
oidCache.put(oid, cp2.getValue().primitiveValue());
return cp2.getValue().primitiveValue();
}
}
}
}
}
}
for (CodeSystem css : context.fetchResourcesByType(CodeSystem.class)) {
if (("urn:oid:"+oid).equals(css.getUrl())) {
oidCache.put(oid, css.getUrl());
return css.getUrl();
}
for (Identifier id : css.getIdentifier()) {
if ("urn:ietf:rfc:3986".equals(id.getSystem()) && ("urn:oid:"+oid).equals(id.getValue())) {
oidCache.put(oid, css.getUrl());
return css.getUrl();
}
}
}
for (NamingSystem ns : context.fetchResourcesByType(NamingSystem.class)) {
if (hasOid(ns, oid)) {
uri = getUri(ns);
if (uri != null) {
oidCache.put(oid, null);
return null;
}
}
}
oidCache.put(oid, null);
return null;
}
private String getUri(NamingSystem ns) {
for (NamingSystemUniqueIdComponent id : ns.getUniqueId()) {
if (id.getType() == NamingSystemIdentifierType.URI)
return id.getValue();
}
return null;
}
private boolean hasOid(NamingSystem ns, String oid) {
for (NamingSystemUniqueIdComponent id : ns.getUniqueId()) {
if (id.getType() == NamingSystemIdentifierType.OID && id.getValue().equals(oid))
return true;
}
return false;
}
/**
* @return a list of the resource and type names defined for this version
*/
public List<String> getTypeNames() {
Set<String> result = new HashSet<String>();
for (StructureDefinition sd : context.fetchResourcesByType(StructureDefinition.class)) {
if (sd.getKind() != StructureDefinitionKind.LOGICAL && sd.getDerivation() == TypeDerivationRule.SPECIALIZATION)
result.add(sd.getName());
}
return Utilities.sorted(result);
}
/**
* @return a set of the resource and type names defined for this version
*/
public Set<String> getTypeNameSet() {
Set<String> result = new HashSet<String>();
for (StructureDefinition sd : context.fetchResourcesByType(StructureDefinition.class)) {
if (sd.getKind() != StructureDefinitionKind.LOGICAL && sd.getDerivation() == TypeDerivationRule.SPECIALIZATION &&
VersionUtilities.versionsCompatible(context.getVersion(), sd.getFhirVersion().toCode())) {
result.add(sd.getName());
}
}
return result;
}
public String getLinkForUrl(String corePath, String url) {
if (url == null) {
return null;
}
if (context.hasResource(Resource.class, url)) {
Resource cr = context.fetchResource(Resource.class, url);
return cr.getUserString("path");
}
return null;
}
protected String tail(String url) {
if (Utilities.noString(url)) {
return "noname";
}
if (url.contains("/")) {
return url.substring(url.lastIndexOf("/")+1);
}
return url;
}
private boolean hasUrlProperty(StructureDefinition sd) {
for (ElementDefinition ed : sd.getSnapshot().getElement()) {
if (ed.getPath().equals(sd.getType()+".url")) {
return true;
}
}
return false;
}
// -- profile services ---------------------------------------------------------
/**
* @return a list of the resource names that are canonical resources defined for this version
*/
public List<String> getCanonicalResourceNames() {
if (canonicalResourceNames == null) {
canonicalResourceNames = new ArrayList<>();
Set<String> names = new HashSet<>();
for (StructureDefinition sd : allStructures()) {
if (sd.getKind() == StructureDefinitionKind.RESOURCE && !sd.getAbstract() && hasUrlProperty(sd)) {
names.add(sd.getType());
}
}
canonicalResourceNames.addAll(Utilities.sorted(names));
}
return canonicalResourceNames;
}
/**
* @return a list of all structure definitions, with snapshots generated (if possible)
*/
public List<StructureDefinition> allStructures(){
if (allStructuresList.isEmpty()) {
Set<StructureDefinition> set = new HashSet<StructureDefinition>();
for (StructureDefinition sd : getStructures()) {
if (!set.contains(sd)) {
try {
generateSnapshot(sd);
// new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(ManagedFileAccess.outStream(Utilities.path("[tmp]", "snapshot", tail(sd.getUrl())+".xml")), sd);
} catch (Exception e) {
if (!isSuppressDebugMessages()) {
System.out.println("Unable to generate snapshot @2 for "+tail(sd.getUrl()) +" from "+tail(sd.getBaseDefinition())+" because "+e.getMessage());
if (context.getLogger() != null) {
e.printStackTrace();
}
}
}
allStructuresList.add(sd);
set.add(sd);
}
}
}
return allStructuresList;
}
/**
* @return a list of all structure definitions, without trying to generate snapshots
*/
public List<StructureDefinition> getStructures() {
return context.fetchResourcesByType(StructureDefinition.class);
}
/**
* Given a structure definition, generate a snapshot (or regenerate it)
* @param p
* @throws DefinitionException
* @throws FHIRException
*/
public void generateSnapshot(StructureDefinition p) throws DefinitionException, FHIRException {
if ((!p.hasSnapshot() || isProfileNeedsRegenerate(p))) {
if (!p.hasBaseDefinition())
throw new DefinitionException(context.formatMessage(I18nConstants.PROFILE___HAS_NO_BASE_AND_NO_SNAPSHOT, p.getName(), p.getUrl()));
StructureDefinition sd = context.fetchResource(StructureDefinition.class, p.getBaseDefinition(), p);
if (sd == null && "http://hl7.org/fhir/StructureDefinition/Base".equals(p.getBaseDefinition())) {
throw new Error("Not done yet"); // sd = ProfileUtilities.makeBaseDefinition(p.getFhirVersion());
}
if (sd == null) {
throw new DefinitionException(context.formatMessage(I18nConstants.PROFILE___BASE__COULD_NOT_BE_RESOLVED, p.getName(), p.getUrl(), p.getBaseDefinition()));
}
List<ValidationMessage> msgs = new ArrayList<ValidationMessage>();
List<String> errors = new ArrayList<String>();
ProfileUtilities pu = new ProfileUtilities(context, msgs, this);
pu.setThrowException(false);
if (sd.getDerivation() == TypeDerivationRule.CONSTRAINT) {
pu.sortDifferential(sd, p, p.getUrl(), errors);
}
pu.setDebug(false);
for (String err : errors) {
msgs.add(new ValidationMessage(Source.ProfileValidator, IssueType.EXCEPTION, p.getUserString("path"), "Error sorting Differential: "+err, ValidationMessage.IssueSeverity.ERROR));
}
pu.generateSnapshot(sd, p, p.getUrl(), sd.getUserString("webroot"), p.getName());
for (ValidationMessage msg : msgs) {
if ((msg.getLevel() == ValidationMessage.IssueSeverity.ERROR) || msg.getLevel() == ValidationMessage.IssueSeverity.FATAL) {
if (!msg.isIgnorableError()) {
throw new DefinitionException(context.formatMessage(I18nConstants.PROFILE___ELEMENT__ERROR_GENERATING_SNAPSHOT_, p.getName(), p.getUrl(), msg.getLocation(), msg.getMessage()));
} else {
System.err.println(msg.getMessage());
}
}
}
if (!p.hasSnapshot())
throw new FHIRException(context.formatMessage(I18nConstants.PROFILE___ERROR_GENERATING_SNAPSHOT, p.getName(), p.getUrl()));
pu = null;
}
}
// work around the fact that some Implementation guides were published with old snapshot generators that left invalid snapshots behind.
private boolean isProfileNeedsRegenerate(StructureDefinition p) {
boolean needs = !p.hasUserData("hack.regnerated") && Utilities.existsInList(p.getUrl(), "http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaireresponse");
if (needs) {
p.setUserData("hack.regnerated", "yes");
}
return needs;
}
@Override
public boolean isPrimitiveType(String type) {
return context.isPrimitiveType(type);
}
@Override
public boolean isDatatype(String type) {
StructureDefinition sd = context.fetchTypeDefinition(type);
return sd != null && (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE || sd.getKind() == StructureDefinitionKind.COMPLEXTYPE) && sd.getDerivation() == TypeDerivationRule.SPECIALIZATION;
}
@Override
public boolean isResource(String t) {
if (getConcreteResourceSet().contains(t)) {
return true;
}
StructureDefinition sd;
try {
sd = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/"+t);
} catch (Exception e) {
return false;
}
if (sd == null)
return false;
if (sd.getDerivation() == TypeDerivationRule.CONSTRAINT)
return false;
return sd.getKind() == StructureDefinitionKind.RESOURCE;
}
@Override
public boolean hasLinkFor(String typeSimple) {
return false;
}
@Override
public String getLinkFor(String corePath, String typeSimple) {
return null;
}
@Override
public BindingResolution resolveBinding(StructureDefinition profile, ElementDefinitionBindingComponent binding, String path) {
return null;
}
@Override
public BindingResolution resolveBinding(StructureDefinition profile, String url, String path) {
return null;
}
@Override
public String getLinkForProfile(StructureDefinition profile, String url) {
return null;
}
@Override
public boolean prependLinks() {
return false;
}
public StructureDefinition fetchByJsonName(String key) {
for (StructureDefinition sd : context.fetchResourcesByType(StructureDefinition.class)) {
ElementDefinition ed = sd.getSnapshot().getElementFirstRep();
if (ed != null) {
return sd;
}
}
return null;
}
public Set<String> getConcreteResourceSet() {
if (concreteResourceNameSet == null) {
concreteResourceNameSet = new HashSet<>();
for (StructureDefinition sd : getStructures()) {
if (sd.getKind() == StructureDefinitionKind.RESOURCE && !sd.getAbstract() && sd.getDerivation() == TypeDerivationRule.SPECIALIZATION) {
concreteResourceNameSet.add(sd.getType());
}
}
}
return concreteResourceNameSet;
}
public List<String> getConcreteResources() {
if (concreteResourceNames == null) {
concreteResourceNames = new ArrayList<>();
concreteResourceNames.addAll(Utilities.sorted(getConcreteResourceSet()));
}
return concreteResourceNames;
}
public List<StructureMap> listMaps(String url) {
List<StructureMap> res = new ArrayList<>();
String start = url.substring(0, url.indexOf("*"));
String end = url.substring(url.indexOf("*")+1);
for (StructureMap map : context.fetchResourcesByType(StructureMap.class)) {
String u = map.getUrl();
if (u.startsWith(start) && u.endsWith(end)) {
res.add(map);
}
}
return res;
}
public List<String> fetchCodeSystemVersions(String system) {
List<String> res = new ArrayList<>();
for (CodeSystem cs : context.fetchResourcesByType(CodeSystem.class)) {
if (system.equals(cs.getUrl()) && cs.hasVersion()) {
res.add(cs.getVersion());
}
}
return res;
}
public StructureDefinition findType(String typeName) {
StructureDefinition t = context.fetchTypeDefinition(typeName);
if (t != null) {
return t;
}
List<StructureDefinition> candidates = new ArrayList<>();
for (StructureDefinition sd : getStructures()) {
if (sd.getType().equals(typeName)) {
candidates.add(sd);
}
}
if (candidates.size() == 1) {
return candidates.get(0);
}
return null;
}
public StructureDefinition fetchProfileByIdentifier(String tid) {
for (StructureDefinition sd : context.fetchResourcesByType(StructureDefinition.class)) {
for (Identifier ii : sd.getIdentifier()) {
if (tid.equals(ii.getValue())) {
return sd;
}
}
}
return null;
}
public boolean isAbstractType(String typeName) {
StructureDefinition sd = context.fetchTypeDefinition(typeName);
if (sd != null) {
return sd.getAbstract();
}
return false;
}
public boolean isDomainResource(String typeName) {
StructureDefinition sd = context.fetchTypeDefinition(typeName);
while (sd != null) {
if ("DomainResource".equals(sd.getType())) {
return true;
}
sd = context.fetchResource(StructureDefinition.class, sd.getBaseDefinition());
}
return false;
}
public IWorkerContext getWorker() {
return context;
}
}

3
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/context/IWorkerContext.java
View File

@ -169,8 +169,10 @@ public interface IWorkerContext {
*/
public <T extends Resource> T fetchResource(Class<T> class_, String uri);
public <T extends Resource> T fetchResource(Class<T> class_, String uri, String version);
public <T extends Resource> T fetchResource(Class<T> class_, String uri, Resource source);
public <T extends Resource> T fetchResourceWithException(Class<T> class_, String uri) throws FHIRException;
public <T extends Resource> List<T> fetchResourcesByType(Class<T> class_);
/**
* Variation of fetchResource when you have a string type, and don't need the
@ -485,6 +487,7 @@ public interface IWorkerContext {
public void setOverrideVersionNs(String value);
public StructureDefinition fetchTypeDefinition(String typeName);
public List<StructureDefinition> fetchTypeDefinitions(String n);
public void setUcumService(UcumService ucumService);

1464
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/fhirpath/ExpressionNode.java
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File diff suppressed because it is too large Load Diff

304
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/fhirpath/FHIRLexer.java
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@ -1,6 +1,10 @@
package org.hl7.fhir.r4.fhirpath;
import java.util.ArrayList;
import java.util.List;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
import org.hl7.fhir.utilities.SourceLocation;
import org.hl7.fhir.utilities.Utilities;
@ -11,20 +15,23 @@ import org.hl7.fhir.utilities.Utilities;
public class FHIRLexer {
public class FHIRLexerException extends FHIRException {
public FHIRLexerException() {
super();
private SourceLocation location;
public FHIRLexerException(String message) {
super(message);
}
public FHIRLexerException(String message, Throwable cause) {
super(message, cause);
}
public FHIRLexerException(String message) {
public FHIRLexerException(String message, SourceLocation location) {
super(message);
this.location = location;
}
public FHIRLexerException(Throwable cause) {
super(cause);
public SourceLocation getLocation() {
return location;
}
}
@ -33,25 +40,44 @@ public class FHIRLexer {
private int cursor;
private int currentStart;
private String current;
private List<String> comments = new ArrayList<>();
private SourceLocation currentLocation;
private SourceLocation currentStartLocation;
private int id;
private String name;
private boolean liquidMode; // in liquid mode, || terminates the expression and hands the parser back to the host
private SourceLocation commentLocation;
private boolean metadataFormat;
private boolean allowDoubleQuotes;
public FHIRLexer(String source, String name) throws FHIRLexerException {
this.source = source;
this.source = source == null ? "" : Utilities.stripBOM(source);
this.name = name == null ? "??" : name;
currentLocation = new SourceLocation(1, 1);
next();
}
public FHIRLexer(String source, int i) throws FHIRLexerException {
this.source = source;
this.source = Utilities.stripBOM(source);
this.cursor = i;
currentLocation = new SourceLocation(1, 1);
next();
}
public FHIRLexer(String source, int i, boolean allowDoubleQuotes) throws FHIRLexerException {
this.source = Utilities.stripBOM(source);
this.cursor = i;
this.allowDoubleQuotes = allowDoubleQuotes;
currentLocation = new SourceLocation(1, 1);
next();
}
public FHIRLexer(String source, String name, boolean metadataFormat, boolean allowDoubleQuotes) throws FHIRLexerException {
this.source = source == null ? "" : Utilities.stripBOM(source);
this.name = name == null ? "??" : name;
this.metadataFormat = metadataFormat;
this.allowDoubleQuotes = allowDoubleQuotes;
currentLocation = new SourceLocation(1, 1);
next();
}
public String getCurrent() {
return current;
}
@ -61,18 +87,15 @@ public class FHIRLexer {
}
public boolean isConstant() {
return current != null && (current.charAt(0) == '\'' || current.charAt(0) == '"') || current.charAt(0) == '@'
|| current.charAt(0) == '%' || current.charAt(0) == '-' || current.charAt(0) == '+'
|| (current.charAt(0) >= '0' && current.charAt(0) <= '9') || current.equals("true") || current.equals("false")
|| current.equals("{}");
return FHIRPathConstant.isFHIRPathConstant(current);
}
public boolean isFixedName() {
return current != null && (current.charAt(0) == '`');
return FHIRPathConstant.isFHIRPathFixedName(current);
}
public boolean isStringConstant() {
return current.charAt(0) == '\'' || current.charAt(0) == '"' || current.charAt(0) == '`';
return FHIRPathConstant.isFHIRPathStringConstant(current);
}
public String take() throws FHIRLexerException {
@ -84,7 +107,7 @@ public class FHIRLexer {
public int takeInt() throws FHIRLexerException {
String s = current;
if (!Utilities.isInteger(s))
throw error("Found " + current + " expecting an integer");
throw error("Found "+current+" expecting an integer");
next();
return Integer.parseInt(s);
}
@ -99,12 +122,10 @@ public class FHIRLexer {
if (current.equals("*") || current.equals("**"))
return true;
if ((current.charAt(0) >= 'A' && current.charAt(0) <= 'Z')
|| (current.charAt(0) >= 'a' && current.charAt(0) <= 'z')) {
for (int i = 1; i < current.length(); i++)
if (!((current.charAt(1) >= 'A' && current.charAt(1) <= 'Z')
|| (current.charAt(1) >= 'a' && current.charAt(1) <= 'z')
|| (current.charAt(1) >= '0' && current.charAt(1) <= '9')))
if ((current.charAt(0) >= 'A' && current.charAt(0) <= 'Z') || (current.charAt(0) >= 'a' && current.charAt(0) <= 'z')) {
for (int i = 1; i < current.length(); i++)
if (!( (current.charAt(1) >= 'A' && current.charAt(1) <= 'Z') || (current.charAt(1) >= 'a' && current.charAt(1) <= 'z') ||
(current.charAt(1) >= '0' && current.charAt(1) <= '9')))
return false;
return true;
}
@ -112,11 +133,11 @@ public class FHIRLexer {
}
public FHIRLexerException error(String msg) {
return error(msg, currentLocation.toString());
return error(msg, currentLocation.toString(), currentLocation);
}
public FHIRLexerException error(String msg, String location) {
return new FHIRLexerException("Error in " + name + " at " + location + ": " + msg);
public FHIRLexerException error(String msg, String location, SourceLocation loc) {
return new FHIRLexerException("Error @"+location+": "+msg, loc);
}
public void next() throws FHIRLexerException {
@ -126,34 +147,30 @@ public class FHIRLexer {
currentStartLocation = currentLocation;
if (cursor < source.length()) {
char ch = source.charAt(cursor);
if (ch == '!' || ch == '>' || ch == '<' || ch == ':' || ch == '-' || ch == '=') {
if (ch == '!' || ch == '>' || ch == '<' || ch == ':' || ch == '-' || ch == '=') {
cursor++;
if (cursor < source.length()
&& (source.charAt(cursor) == '=' || source.charAt(cursor) == '~' || source.charAt(cursor) == '-')
|| (ch == '-' && source.charAt(cursor) == '>'))
if (cursor < source.length() && (source.charAt(cursor) == '=' || source.charAt(cursor) == '~' || source.charAt(cursor) == '-') || (ch == '-' && source.charAt(cursor) == '>'))
cursor++;
current = source.substring(currentStart, cursor);
} else if (ch == '.') {
} else if (ch == '.' ) {
cursor++;
if (cursor < source.length() && (source.charAt(cursor) == '.'))
if (cursor < source.length() && (source.charAt(cursor) == '.'))
cursor++;
current = source.substring(currentStart, cursor);
} else if (ch >= '0' && ch <= '9') {
cursor++;
cursor++;
boolean dotted = false;
while (cursor < source.length() && ((source.charAt(cursor) >= '0' && source.charAt(cursor) <= '9')
|| (source.charAt(cursor) == '.') && !dotted)) {
while (cursor < source.length() && ((source.charAt(cursor) >= '0' && source.charAt(cursor) <= '9') || (source.charAt(cursor) == '.') && !dotted)) {
if (source.charAt(cursor) == '.')
dotted = true;
cursor++;
}
if (source.charAt(cursor - 1) == '.')
if (source.charAt(cursor-1) == '.')
cursor--;
current = source.substring(currentStart, cursor);
} else if ((ch >= 'a' && ch <= 'z') || (ch >= 'A' && ch <= 'Z')) {
while (cursor < source.length() && ((source.charAt(cursor) >= 'A' && source.charAt(cursor) <= 'Z')
|| (source.charAt(cursor) >= 'a' && source.charAt(cursor) <= 'z')
|| (source.charAt(cursor) >= '0' && source.charAt(cursor) <= '9') || source.charAt(cursor) == '_'))
} else if ((ch >= 'a' && ch <= 'z') || (ch >= 'A' && ch <= 'Z')) {
while (cursor < source.length() && ((source.charAt(cursor) >= 'A' && source.charAt(cursor) <= 'Z') || (source.charAt(cursor) >= 'a' && source.charAt(cursor) <= 'z') ||
(source.charAt(cursor) >= '0' && source.charAt(cursor) <= '9') || source.charAt(cursor) == '_'))
cursor++;
current = source.substring(currentStart, cursor);
} else if (ch == '%') {
@ -164,19 +181,20 @@ public class FHIRLexer {
cursor++;
cursor++;
} else
while (cursor < source.length() && ((source.charAt(cursor) >= 'A' && source.charAt(cursor) <= 'Z')
|| (source.charAt(cursor) >= 'a' && source.charAt(cursor) <= 'z')
|| (source.charAt(cursor) >= '0' && source.charAt(cursor) <= '9') || source.charAt(cursor) == ':'
|| source.charAt(cursor) == '-'))
cursor++;
while (cursor < source.length() && ((source.charAt(cursor) >= 'A' && source.charAt(cursor) <= 'Z') || (source.charAt(cursor) >= 'a' && source.charAt(cursor) <= 'z') ||
(source.charAt(cursor) >= '0' && source.charAt(cursor) <= '9') || source.charAt(cursor) == ':' || source.charAt(cursor) == '-' || source.charAt(cursor) == '_'))
cursor++;
current = source.substring(currentStart, cursor);
} else if (ch == '/') {
cursor++;
if (cursor < source.length() && (source.charAt(cursor) == '/')) {
// this is en error - should already have been skipped
error("This shoudn't happen?");
// we've run into metadata
cursor++;
cursor++;
current = source.substring(currentStart, cursor);
} else {
current = source.substring(currentStart, cursor);
}
current = source.substring(currentStart, cursor);
} else if (ch == '$') {
cursor++;
while (cursor < source.length() && (source.charAt(cursor) >= 'a' && source.charAt(cursor) <= 'z'))
@ -188,42 +206,42 @@ public class FHIRLexer {
if (ch == '}')
cursor++;
current = source.substring(currentStart, cursor);
} else if (ch == '"') {
} else if (ch == '"' && allowDoubleQuotes) {
cursor++;
boolean escape = false;
while (cursor < source.length() && (escape || source.charAt(cursor) != '"')) {
if (escape)
escape = false;
else
else
escape = (source.charAt(cursor) == '\\');
cursor++;
}
if (cursor == source.length())
throw error("Unterminated string");
cursor++;
current = "\"" + source.substring(currentStart + 1, cursor - 1) + "\"";
current = "\""+source.substring(currentStart+1, cursor-1)+"\"";
} else if (ch == '`') {
cursor++;
boolean escape = false;
while (cursor < source.length() && (escape || source.charAt(cursor) != '`')) {
if (escape)
escape = false;
else
else
escape = (source.charAt(cursor) == '\\');
cursor++;
}
if (cursor == source.length())
throw error("Unterminated string");
cursor++;
current = "`" + source.substring(currentStart + 1, cursor - 1) + "`";
} else if (ch == '\'') {
current = "`"+source.substring(currentStart+1, cursor-1)+"`";
} else if (ch == '\''){
cursor++;
char ech = ch;
boolean escape = false;
while (cursor < source.length() && (escape || source.charAt(cursor) != ech)) {
if (escape)
escape = false;
else
else
escape = (source.charAt(cursor) == '\\');
cursor++;
}
@ -232,26 +250,32 @@ public class FHIRLexer {
cursor++;
current = source.substring(currentStart, cursor);
if (ech == '\'')
current = "\'" + current.substring(1, current.length() - 1) + "\'";
current = "\'"+current.substring(1, current.length() - 1)+"\'";
} else if (ch == '`') {
cursor++;
boolean escape = false;
while (cursor < source.length() && (escape || source.charAt(cursor) != '`')) {
if (escape)
escape = false;
else
else
escape = (source.charAt(cursor) == '\\');
cursor++;
}
if (cursor == source.length())
throw error("Unterminated string");
cursor++;
current = "`" + source.substring(currentStart + 1, cursor - 1) + "`";
} else if (ch == '@') {
current = "`"+source.substring(currentStart+1, cursor-1)+"`";
} else if (ch == '|' && liquidMode) {
cursor++;
ch = source.charAt(cursor);
if (ch == '|')
cursor++;
current = source.substring(currentStart, cursor);
} else if (ch == '@'){
int start = cursor;
cursor++;
while (cursor < source.length() && isDateChar(source.charAt(cursor), start))
cursor++;
cursor++;
current = source.substring(currentStart, cursor);
} else { // if CharInSet(ch, ['.', ',', '(', ')', '=', '$']) then
cursor++;
@ -261,23 +285,36 @@ public class FHIRLexer {
}
private void skipWhitespaceAndComments() {
comments.clear();
commentLocation = null;
boolean last13 = false;
boolean done = false;
while (cursor < source.length() && !done) {
if (cursor < source.length() - 1 && "//".equals(source.substring(cursor, cursor + 2))) {
while (cursor < source.length() && !((source.charAt(cursor) == '\r') || source.charAt(cursor) == '\n'))
cursor++;
} else if (cursor < source.length() - 1 && "/*".equals(source.substring(cursor, cursor + 2))) {
while (cursor < source.length() - 1 && !"*/".equals(source.substring(cursor, cursor + 2))) {
last13 = currentLocation.checkChar(source.charAt(cursor), last13);
cursor++;
if (cursor < source.length() -1 && "//".equals(source.substring(cursor, cursor+2)) && !isMetadataStart()) {
if (commentLocation == null) {
commentLocation = currentLocation.copy();
}
if (cursor >= source.length() - 1) {
int start = cursor+2;
while (cursor < source.length() && !((source.charAt(cursor) == '\r') || source.charAt(cursor) == '\n')) {
cursor++;
}
comments.add(source.substring(start, cursor).trim());
} else if (cursor < source.length() - 1 && "/*".equals(source.substring(cursor, cursor+2))) {
if (commentLocation == null) {
commentLocation = currentLocation.copy();
}
int start = cursor+2;
while (cursor < source.length() - 1 && !"*/".equals(source.substring(cursor, cursor+2))) {
last13 = currentLocation.checkChar(source.charAt(cursor), last13);
cursor++;
}
if (cursor >= source.length() -1) {
error("Unfinished comment");
} else {
comments.add(source.substring(start, cursor).trim());
cursor = cursor + 2;
}
} else if (Character.isWhitespace(source.charAt(cursor))) {
} else if (Utilities.isWhitespace(source.charAt(cursor))) {
last13 = currentLocation.checkChar(source.charAt(cursor), last13);
cursor++;
} else {
@ -285,13 +322,15 @@ public class FHIRLexer {
}
}
}
private boolean isDateChar(char ch, int start) {
int eot = source.charAt(start + 1) == 'T' ? 10 : 20;
return ch == '-' || ch == ':' || ch == 'T' || ch == '+' || ch == 'Z' || Character.isDigit(ch)
|| (cursor - start == eot && ch == '.' && cursor < source.length() - 1
&& Character.isDigit(source.charAt(cursor + 1)));
private boolean isMetadataStart() {
return metadataFormat && cursor < source.length() - 2 && "///".equals(source.substring(cursor, cursor+3));
}
private boolean isDateChar(char ch,int start) {
int eot = source.charAt(start+1) == 'T' ? 10 : 20;
return ch == '-' || ch == ':' || ch == 'T' || ch == '+' || ch == 'Z' || Character.isDigit(ch) || (cursor-start == eot && ch == '.' && cursor < source.length()-1&& Character.isDigit(source.charAt(cursor+1)));
}
public boolean isOp() {
@ -320,35 +359,60 @@ public class FHIRLexer {
return !done() && current.startsWith("//");
}
public boolean hasComments() {
return comments.size() > 0;
}
public List<String> getComments() {
return comments;
}
public String getAllComments() {
CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder("\r\n");
b.addAll(comments);
comments.clear();
return b.toString();
}
public String getFirstComment() {
if (hasComments()) {
String s = comments.get(0);
comments.remove(0);
return s;
} else {
return null;
}
}
public boolean hasToken(String kw) {
return !done() && kw.equals(current);
}
public boolean hasToken(String... names) {
if (done())
if (done())
return false;
for (String s : names)
if (s.equals(current))
return true;
return false;
}
public void token(String kw) throws FHIRLexerException {
if (!kw.equals(current))
throw error("Found \"" + current + "\" expecting \"" + kw + "\"");
if (!kw.equals(current))
throw error("Found \""+current+"\" expecting \""+kw+"\"");
next();
}
public String readConstant(String desc) throws FHIRLexerException {
if (!isStringConstant())
throw error("Found " + current + " expecting \"[" + desc + "]\"");
throw error("Found "+current+" expecting \"["+desc+"]\"");
return processConstant(take());
}
public String readFixedName(String desc) throws FHIRLexerException {
if (!isFixedName())
throw error("Found " + current + " expecting \"[" + desc + "]\"");
throw error("Found "+current+" expecting \"["+desc+"]\"");
return processFixedName(take());
}
@ -356,21 +420,21 @@ public class FHIRLexer {
public String processConstant(String s) throws FHIRLexerException {
StringBuilder b = new StringBuilder();
int i = 1;
while (i < s.length() - 1) {
while (i < s.length()-1) {
char ch = s.charAt(i);
if (ch == '\\') {
i++;
switch (s.charAt(i)) {
case 't':
case 't':
b.append('\t');
break;
case 'r':
b.append('\r');
break;
case 'n':
case 'n':
b.append('\n');
break;
case 'f':
case 'f':
b.append('\f');
break;
case '\'':
@ -382,20 +446,20 @@ public class FHIRLexer {
case '`':
b.append('`');
break;
case '\\':
case '\\':
b.append('\\');
break;
case '/':
case '/':
b.append('/');
break;
case 'u':
i++;
int uc = Integer.parseInt(s.substring(i, i + 4), 16);
int uc = Integer.parseInt(s.substring(i, i+4), 16);
b.append(Character.toString(uc));
i = i + 4;
break;
default:
throw new FHIRLexerException("Unknown character escape \\" + s.charAt(i));
throw new FHIRLexerException("Unknown FHIRPath character escape \\"+s.charAt(i), currentLocation);
}
} else {
b.append(ch);
@ -404,25 +468,25 @@ public class FHIRLexer {
}
return b.toString();
}
public String processFixedName(String s) throws FHIRLexerException {
StringBuilder b = new StringBuilder();
int i = 1;
while (i < s.length() - 1) {
while (i < s.length()-1) {
char ch = s.charAt(i);
if (ch == '\\') {
i++;
switch (s.charAt(i)) {
case 't':
case 't':
b.append('\t');
break;
case 'r':
b.append('\r');
break;
case 'n':
case 'n':
b.append('\n');
break;
case 'f':
case 'f':
b.append('\f');
break;
case '\'':
@ -431,20 +495,20 @@ public class FHIRLexer {
case '"':
b.append('"');
break;
case '\\':
case '\\':
b.append('\\');
break;
case '/':
case '/':
b.append('/');
break;
case 'u':
i++;
int uc = Integer.parseInt(s.substring(i, i + 4), 16);
int uc = Integer.parseInt(s.substring(i, i+4), 32);
b.append(Character.toString(uc));
i = i + 4;
break;
default:
throw new FHIRLexerException("Unknown character escape \\" + s.charAt(i));
throw new FHIRLexerException("Unknown FHIRPath character escape \\"+s.charAt(i), currentLocation);
}
} else {
b.append(ch);
@ -457,9 +521,9 @@ public class FHIRLexer {
public void skipToken(String token) throws FHIRLexerException {
if (getCurrent().equals(token))
next();
}
public String takeDottedToken() throws FHIRLexerException {
StringBuilder b = new StringBuilder();
b.append(take());
@ -478,5 +542,39 @@ public class FHIRLexer {
public int getCurrentStart() {
return currentStart;
}
public String getSource() {
return source;
}
public boolean isLiquidMode() {
return liquidMode;
}
public void setLiquidMode(boolean liquidMode) {
this.liquidMode = liquidMode;
}
public SourceLocation getCommentLocation() {
return this.commentLocation;
}
public boolean isMetadataFormat() {
return metadataFormat;
}
public void setMetadataFormat(boolean metadataFormat) {
this.metadataFormat = metadataFormat;
}
public List<String> cloneComments() {
List<String> res = new ArrayList<>();
res.addAll(getComments());
return res;
}
public String tokenWithTrailingComment(String token) {
int line = getCurrentLocation().getLine();
token(token);
if (getComments().size() > 0 && getCommentLocation().getLine() == line) {
return getFirstComment();
} else {
return null;
}
}
public boolean isAllowDoubleQuotes() {
return allowDoubleQuotes;
}
}

3495
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/fhirpath/FHIRPathEngine.java
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375
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/fhirpath/TypeDetails.java
View File

@ -32,6 +32,8 @@ package org.hl7.fhir.r4.fhirpath;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collection;
import java.util.Collections;
import java.util.Comparator;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
@ -42,32 +44,49 @@ import org.hl7.fhir.r4.fhirpath.ExpressionNode.CollectionStatus;
import org.hl7.fhir.r4.model.CanonicalType;
import org.hl7.fhir.r4.model.ElementDefinition.ElementDefinitionBindingComponent;
import org.hl7.fhir.r4.model.StructureDefinition;
import org.hl7.fhir.r4.model.StructureDefinition.StructureDefinitionKind;
import org.hl7.fhir.r4.model.UriType;
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
import org.hl7.fhir.utilities.Utilities;
public class TypeDetails {
public class ProfiledTypeSorter implements Comparator<ProfiledType> {
@Override
public int compare(ProfiledType o1, ProfiledType o2) {
return o1.uri.compareTo(o2.uri);
}
}
public static final String FHIR_NS = "http://hl7.org/fhir/StructureDefinition/";
public static final String FP_NS = "http://hl7.org/fhirpath/";
public static final String FP_String = "http://hl7.org/fhirpath/String";
public static final String FP_Boolean = "http://hl7.org/fhirpath/Boolean";
public static final String FP_Integer = "http://hl7.org/fhirpath/Integer";
public static final String FP_Decimal = "http://hl7.org/fhirpath/Decimal";
public static final String FP_Quantity = "http://hl7.org/fhirpath/Quantity";
public static final String FP_DateTime = "http://hl7.org/fhirpath/DateTime";
public static final String FP_Time = "http://hl7.org/fhirpath/Time";
public static final String FP_SimpleTypeInfo = "http://hl7.org/fhirpath/SimpleTypeInfo";
public static final String FP_ClassInfo = "http://hl7.org/fhirpath/ClassInfo";
public static final String FP_String = "http://hl7.org/fhirpath/System.String";
public static final String FP_Boolean = "http://hl7.org/fhirpath/System.Boolean";
public static final String FP_Integer = "http://hl7.org/fhirpath/System.Integer";
public static final String FP_Decimal = "http://hl7.org/fhirpath/System.Decimal";
public static final String FP_Quantity = "http://hl7.org/fhirpath/System.Quantity";
public static final String FP_DateTime = "http://hl7.org/fhirpath/System.DateTime";
public static final String FP_Time = "http://hl7.org/fhirpath/System.Time";
public static final String FP_SimpleTypeInfo = "http://hl7.org/fhirpath/System.SimpleTypeInfo";
public static final String FP_ClassInfo = "http://hl7.org/fhirpath/System.ClassInfo";
public static final Set<String> FP_NUMBERS = new HashSet<String>(Arrays.asList(FP_Integer, FP_Decimal));
public static class ProfiledType {
@Override
public String toString() {
return uri;
}
private String uri;
private List<String> profiles; // or, not and
private List<ElementDefinitionBindingComponent> bindings;
public ProfiledType(String n) {
uri = ns(n);
uri = ns(n);
}
public String getUri() {
return uri;
}
@ -75,7 +94,6 @@ public class TypeDetails {
public boolean hasProfiles() {
return profiles != null && profiles.size() > 0;
}
public List<String> getProfiles() {
return profiles;
}
@ -83,13 +101,12 @@ public class TypeDetails {
public boolean hasBindings() {
return bindings != null && bindings.size() > 0;
}
public List<ElementDefinitionBindingComponent> getBindings() {
return bindings;
}
public static String ns(String n) {
return Utilities.isAbsoluteUrl(n) ? n : FHIR_NS + n;
return Utilities.isAbsoluteUrl(n) ? n : FHIR_NS+n;
}
public void addProfile(String profile) {
@ -113,14 +130,26 @@ public class TypeDetails {
for (UriType u : list)
profiles.add(u.getValue());
}
public boolean isSystemType() {
return uri.startsWith(FP_NS);
}
}
public String describeMin() {
if (uri.startsWith(FP_NS)) {
return "System."+uri.substring(FP_NS.length());
}
if (uri.startsWith("http://hl7.org/fhir/StructureDefinition/")) {
return "FHIR."+uri.substring("http://hl7.org/fhir/StructureDefinition/".length());
}
return uri;
}
}
private List<ProfiledType> types = new ArrayList<ProfiledType>();
private CollectionStatus collectionStatus;
private Set<String> targets; // or, not and, canonical urls
private boolean choice;
public TypeDetails(CollectionStatus collectionStatus, String... names) {
super();
@ -129,7 +158,6 @@ public class TypeDetails {
this.types.add(new ProfiledType(n));
}
}
public TypeDetails(CollectionStatus collectionStatus, Set<String> names) {
super();
this.collectionStatus = collectionStatus;
@ -137,20 +165,21 @@ public class TypeDetails {
addType(new ProfiledType(n));
}
}
public TypeDetails(CollectionStatus collectionStatus, ProfiledType pt) {
super();
this.collectionStatus = collectionStatus;
this.types.add(pt);
}
private TypeDetails() {
}
public String addType(String n) {
ProfiledType pt = new ProfiledType(n);
String res = pt.uri;
addType(pt);
return res;
}
public String addType(String n, String p) {
ProfiledType pt = new ProfiledType(n);
pt.addProfile(p);
@ -158,7 +187,7 @@ public class TypeDetails {
addType(pt);
return res;
}
public void addType(ProfiledType pt) {
for (ProfiledType et : types) {
if (et.uri.equals(pt.uri)) {
@ -181,99 +210,163 @@ public class TypeDetails {
return;
}
}
types.add(pt);
types.add(pt);
}
public void addType(CollectionStatus status, ProfiledType pt) {
addType(pt);
if (collectionStatus == null) {
collectionStatus = status;
} else {
switch (status) {
case ORDERED:
if (collectionStatus == CollectionStatus.SINGLETON) {
collectionStatus = status;
}
break;
case SINGLETON:
break;
case UNORDERED:
collectionStatus = status;
break;
default:
break;
}
}
}
public void addTypes(Collection<String> names) {
for (String n : names)
for (String n : names)
addType(new ProfiledType(n));
}
public boolean hasType(IWorkerContext context, String... tn) {
for (String n : tn) {
for (String n: tn) {
String t = ProfiledType.ns(n);
if (typesContains(t))
return true;
if (Utilities.existsInList(n, "boolean", "string", "integer", "decimal", "Quantity", "dateTime", "time",
"ClassInfo", "SimpleTypeInfo")) {
t = FP_NS + Utilities.capitalize(n);
if (typesContains(t))
if (Utilities.existsInList(n, "boolean", "string", "integer", "decimal", "Quantity", "dateTime", "time", "ClassInfo", "SimpleTypeInfo")) {
t = FP_NS+"System."+Utilities.capitalize(n);
if (typesContains(t)) {
return true;
}
}
t = ProfiledType.ns(n);
StructureDefinition sd = context.fetchTypeDefinition(t);
if (sd != null && sd.getKind() != StructureDefinitionKind.LOGICAL && Utilities.existsInList(sd.getType(), "boolean", "string", "integer", "decimal", "Quantity", "dateTime", "time")) {
t = FP_NS+"System."+Utilities.capitalize(sd.getType());
if (typesContains(t)) {
return true;
}
}
}
for (String n : tn) {
for (String n: tn) {
String id = n.contains("#") ? n.substring(0, n.indexOf("#")) : n;
String tail = null;
if (n.contains("#")) {
tail = n.substring(n.indexOf("#") + 1);
tail = n.substring( n.indexOf("#")+1);
tail = tail.substring(tail.indexOf("."));
}
String t = ProfiledType.ns(n);
StructureDefinition sd = context.fetchResource(StructureDefinition.class, t);
while (sd != null) {
if (tail == null && typesContains(sd.getUrl()))
return true;
if (tail == null && getSystemType(sd.getUrl()) != null && typesContains(getSystemType(sd.getUrl())))
return true;
if (tail != null && typesContains(sd.getUrl() + "#" + sd.getType() + tail))
return true;
if (sd.hasBaseDefinition()) {
if (sd.getType().equals("uri"))
sd = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/string");
else
sd = context.fetchResource(StructureDefinition.class, sd.getBaseDefinition());
} else
sd = null;
List<StructureDefinition> list = new ArrayList<>();
if (!Utilities.isAbsoluteUrl(n)) {
list.addAll(context.fetchTypeDefinitions(n));
} else {
String t = ProfiledType.ns(n);
StructureDefinition sd = context.fetchResource(StructureDefinition.class, t);
if (sd != null) {
list.add(sd);
}
}
for (int i = 0; i < list.size(); i++) {
StructureDefinition sd = list.get(i);
while (sd != null) {
if (tail == null && typesContains(sd.getUrl()))
return true;
if (tail == null && getSystemType(sd.getUrl()) != null && typesContains(getSystemType(sd.getUrl())))
return true;
if (tail != null && typesContains(sd.getUrl()+"#"+sd.getType()+tail))
return true;
if ("http://hl7.org/fhir/StructureDefinition/string".equals(sd.getUrl()) && typesContains(FP_String)) {
return true; // this is work around for R3
}
if (sd.hasBaseDefinition()) {
if (sd.getType().equals("uri"))
sd = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/string");
else
sd = context.fetchResource(StructureDefinition.class, sd.getBaseDefinition());
} else {
sd = null;
}
}
}
}
return false;
}
private String getSystemType(String url) {
if (url.startsWith("http://hl7.org/fhir/StructureDefinition/")) {
String code = url.substring(40);
if (Utilities.existsInList(code, "string", "boolean", "integer", "decimal", "dateTime", "time", "Quantity"))
return FP_NS + Utilities.capitalize(code);
if (Utilities.existsInList(code, "string", "boolean", "integer", "decimal", "dateTime", "time", "Quantity"))
return FP_NS+"System.."+Utilities.capitalize(code);
}
return null;
}
private boolean typesContains(String t) {
for (ProfiledType pt : types)
if (pt.uri.equals(t))
return true;
return false;
}
public void update(TypeDetails source) {
for (ProfiledType pt : source.types)
addType(pt);
if (collectionStatus == null)
if (collectionStatus == null || collectionStatus == CollectionStatus.SINGLETON)
collectionStatus = source.collectionStatus;
else if (source.collectionStatus == CollectionStatus.UNORDERED)
collectionStatus = source.collectionStatus;
else
collectionStatus = CollectionStatus.ORDERED;
if (source.targets != null) {
if (targets == null) {
targets = new HashSet<>();
}
targets.addAll(source.targets);
}
if (source.isChoice()) {
choice = true;
}
}
public TypeDetails union(TypeDetails right) {
TypeDetails result = new TypeDetails(null);
if (right.collectionStatus == CollectionStatus.UNORDERED || collectionStatus == CollectionStatus.UNORDERED)
result.collectionStatus = CollectionStatus.UNORDERED;
else
else
result.collectionStatus = CollectionStatus.ORDERED;
for (ProfiledType pt : types)
result.addType(pt);
for (ProfiledType pt : right.types)
result.addType(pt);
if (targets != null || right.targets != null) {
result.targets = new HashSet<>();
if (targets != null) {
result.targets.addAll(targets);
}
if (right.targets != null) {
result.targets.addAll(right.targets);
}
}
return result;
}
public TypeDetails intersect(TypeDetails right) {
TypeDetails result = new TypeDetails(null);
if (right.collectionStatus == CollectionStatus.UNORDERED || collectionStatus == CollectionStatus.UNORDERED)
result.collectionStatus = CollectionStatus.UNORDERED;
else
else
result.collectionStatus = CollectionStatus.ORDERED;
for (ProfiledType pt : types) {
boolean found = false;
@ -284,77 +377,106 @@ public class TypeDetails {
}
for (ProfiledType pt : right.types)
result.addType(pt);
if (targets != null && right.targets != null) {
result.targets = new HashSet<>();
for (String s : targets) {
if (right.targets.contains(s)) {
result.targets.add(s);
}
}
}
return result;
}
public boolean hasNoTypes() {
return types.isEmpty();
}
public Set<String> getTypes() {
Set<String> res = new HashSet<String>();
for (ProfiledType pt : types)
res.add(pt.uri);
return res;
}
public TypeDetails toSingleton() {
TypeDetails result = new TypeDetails(CollectionStatus.SINGLETON);
result.types.addAll(types);
return result;
}
public TypeDetails toOrdered() {
TypeDetails result = new TypeDetails(CollectionStatus.ORDERED);
result.types.addAll(types);
return result;
}
public TypeDetails toUnordered() {
TypeDetails result = new TypeDetails(CollectionStatus.UNORDERED);
result.types.addAll(types);
return result;
}
public CollectionStatus getCollectionStatus() {
return collectionStatus;
}
private boolean hasType(ProfiledType pt) {
return hasType(pt.uri);
}
public boolean hasType(String n) {
String t = ProfiledType.ns(n);
if (typesContains(t))
return true;
if (Utilities.existsInList(n, "boolean", "string", "integer", "decimal", "Quantity", "date", "dateTime", "time",
"ClassInfo", "SimpleTypeInfo")) {
t = FP_NS + Utilities.capitalize(n);
if (Utilities.existsInList(n, "boolean", "string", "integer", "decimal", "Quantity", "date", "dateTime", "time", "ClassInfo", "SimpleTypeInfo")) {
t = FP_NS+"System."+Utilities.capitalize(n);
if (typesContains(t))
return true;
}
return false;
}
public boolean hasType(Set<String> tn) {
for (String n : tn) {
for (String n: tn) {
String t = ProfiledType.ns(n);
if (typesContains(t))
return true;
if (Utilities.existsInList(n, "boolean", "string", "integer", "decimal", "Quantity", "dateTime", "time",
"ClassInfo", "SimpleTypeInfo")) {
t = FP_NS + Utilities.capitalize(n);
if (Utilities.existsInList(n, "boolean", "string", "integer", "decimal", "Quantity", "dateTime", "time", "ClassInfo", "SimpleTypeInfo")) {
t = FP_NS+"System."+Utilities.capitalize(n);
if (typesContains(t))
return true;
}
}
return false;
}
public String describe() {
return getTypes().toString();
return Utilities.sorted(getTypes()).toString();
}
public String describeMin() {
CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
for (ProfiledType pt : sortedTypes(types))
b.append(pt.describeMin());
return b.toString();
}
private List<ProfiledType> sortedTypes(List<ProfiledType> types2) {
List<ProfiledType> list = new ArrayList<>();
Collections.sort(list, new ProfiledTypeSorter());
return list;
}
public String getType() {
for (ProfiledType pt : types)
return pt.uri;
return null;
}
@Override
public String toString() {
return (collectionStatus == null ? collectionStatus.SINGLETON.toString() : collectionStatus.toString())
+ getTypes().toString();
return (collectionStatus == null ? collectionStatus.SINGLETON.toString() : collectionStatus.toString()) + getTypes().toString();
}
public String getTypeCode() throws DefinitionException {
if (types.size() != 1)
throw new DefinitionException("Multiple types? (" + types.toString() + ")");
throw new DefinitionException("Multiple types? ("+types.toString()+")");
for (ProfiledType pt : types)
if (pt.uri.startsWith("http://hl7.org/fhir/StructureDefinition/"))
return pt.uri.substring(40);
@ -362,11 +484,9 @@ public class TypeDetails {
return pt.uri;
return null;
}
public List<ProfiledType> getProfiledTypes() {
return types;
}
public boolean hasBinding() {
for (ProfiledType pt : types) {
if (pt.hasBindings())
@ -374,7 +494,6 @@ public class TypeDetails {
}
return false;
}
public ElementDefinitionBindingComponent getBinding() {
for (ProfiledType pt : types) {
for (ElementDefinitionBindingComponent b : pt.getBindings())
@ -382,5 +501,97 @@ public class TypeDetails {
}
return null;
}
public void addTarget(String url) {
if (targets == null) {
targets = new HashSet<>();
}
targets.add(url);
}
public Set<String> getTargets() {
return targets;
}
public boolean typesHaveTargets() {
for (ProfiledType pt : types) {
if (Utilities.existsInList(pt.getUri(), "Reference", "CodeableReference", "canonical", "http://hl7.org/fhir/StructureDefinition/Reference", "http://hl7.org/fhir/StructureDefinition/CodeableReference", "http://hl7.org/fhir/StructureDefinition/canonical")) {
return true;
}
}
return false;
}
public void addTargets(Set<String> src) {
if (src != null) {
for (String s : src) {
addTarget(s);
}
}
}
public TypeDetails copy() {
TypeDetails td = new TypeDetails();
td.types.addAll(types);
td.collectionStatus = collectionStatus;
if (targets != null ) {
td.targets = new HashSet<>();
td.targets.addAll(targets);
}
return td;
}
public boolean matches(TypeDetails other) {
boolean result = collectionStatus == other.collectionStatus && types.equals(other.types);
if (targets == null) {
return result && other.targets == null;
} else {
return result && targets.equals(other.targets);
}
}
public void addTypes(TypeDetails other) {
if (other.collectionStatus != CollectionStatus.SINGLETON) {
if (other.collectionStatus == CollectionStatus.UNORDERED || collectionStatus == CollectionStatus.UNORDERED) {
collectionStatus = CollectionStatus.UNORDERED;
} else {
collectionStatus = CollectionStatus.ORDERED;
}
}
for (ProfiledType pt : other.types) {
addType(pt);
}
if (other.targets != null) {
if (targets == null) {
targets = new HashSet<>();
}
targets.addAll(other.targets);
}
}
public boolean contains(TypeDetails other) {
// TODO Auto-generated method stub
if (other.collectionStatus != collectionStatus) {
return false;
}
for (ProfiledType pt : other.types) {
if (!hasType(pt)) {
return false;
}
}
return true;
}
public static TypeDetails empty() {
return new TypeDetails(CollectionStatus.SINGLETON);
}
public boolean isList() {
return collectionStatus != null && collectionStatus.isList();
}
// for SQL-on-FHIR: warnings when .ofType() is not paired with a choice element
public void setChoice(boolean b) {
choice = true;
}
public boolean isChoice() {
return choice;
}
}

11
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/model/Base.java
View File

@ -212,6 +212,17 @@ public abstract class Base implements Serializable, IBase, IElement {
return result;
}
public Base getChildValueByName(String name) {
Property p = getChildByName(name);
if (p != null && p.hasValues()) {
if (p.getValues().size() > 1) {
throw new Error("Too manye values for "+name+" found");
} else {
return p.getValues().get(0);
}
}
return null;
}
public Base[] listChildrenByName(String name, boolean checkValid) throws FHIRException {
if (name.equals("*")) {
List<Property> children = new ArrayList<Property>();

2
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/model/Constants.java
View File

@ -39,5 +39,7 @@ public class Constants {
public final static String URI_REGEX = "((http|https)://([A-Za-z0-9\\\\\\.\\:\\%\\$]*\\/)*)?(Account|ActivityDefinition|AdverseEvent|AllergyIntolerance|Appointment|AppointmentResponse|AuditEvent|Basic|Binary|BiologicallyDerivedProduct|BodyStructure|Bundle|CapabilityStatement|CarePlan|CareTeam|CatalogEntry|ChargeItem|ChargeItemDefinition|Claim|ClaimResponse|ClinicalImpression|CodeSystem|Communication|CommunicationRequest|CompartmentDefinition|Composition|ConceptMap|Condition|Consent|Contract|Coverage|CoverageEligibilityRequest|CoverageEligibilityResponse|DetectedIssue|Device|DeviceDefinition|DeviceMetric|DeviceRequest|DeviceUseStatement|DiagnosticReport|DocumentManifest|DocumentReference|EffectEvidenceSynthesis|Encounter|Endpoint|EnrollmentRequest|EnrollmentResponse|EpisodeOfCare|EventDefinition|Evidence|EvidenceVariable|ExampleScenario|ExplanationOfBenefit|FamilyMemberHistory|Flag|Goal|GraphDefinition|Group|GuidanceResponse|HealthcareService|ImagingStudy|Immunization|ImmunizationEvaluation|ImmunizationRecommendation|ImplementationGuide|InsurancePlan|Invoice|Library|Linkage|List|Location|Measure|MeasureReport|Media|Medication|MedicationAdministration|MedicationDispense|MedicationKnowledge|MedicationRequest|MedicationStatement|MedicinalProduct|MedicinalProductAuthorization|MedicinalProductContraindication|MedicinalProductIndication|MedicinalProductIngredient|MedicinalProductInteraction|MedicinalProductManufactured|MedicinalProductPackaged|MedicinalProductPharmaceutical|MedicinalProductUndesirableEffect|MessageDefinition|MessageHeader|MolecularSequence|NamingSystem|NutritionOrder|Observation|ObservationDefinition|OperationDefinition|OperationOutcome|Organization|OrganizationAffiliation|Patient|PaymentNotice|PaymentReconciliation|Person|PlanDefinition|Practitioner|PractitionerRole|Procedure|Provenance|Questionnaire|QuestionnaireResponse|RelatedPerson|RequestGroup|ResearchDefinition|ResearchElementDefinition|ResearchStudy|ResearchSubject|RiskAssessment|RiskEvidenceSynthesis|Schedule|SearchParameter|ServiceRequest|Slot|Specimen|SpecimenDefinition|StructureDefinition|StructureMap|Subscription|Substance|SubstanceNucleicAcid|SubstancePolymer|SubstanceProtein|SubstanceReferenceInformation|SubstanceSourceMaterial|SubstanceSpecification|SupplyDelivery|SupplyRequest|Task|TerminologyCapabilities|TestReport|TestScript|ValueSet|VerificationResult|VisionPrescription)\\/[A-Za-z0-9\\-\\.]{1,64}(\\/_history\\/[A-Za-z0-9\\-\\.]{1,64})?";
public final static String LOCAL_REF_REGEX = "(Account|ActivityDefinition|AdverseEvent|AllergyIntolerance|Appointment|AppointmentResponse|AuditEvent|Basic|Binary|BiologicallyDerivedProduct|BodyStructure|Bundle|CapabilityStatement|CarePlan|CareTeam|CatalogEntry|ChargeItem|ChargeItemDefinition|Claim|ClaimResponse|ClinicalImpression|CodeSystem|Communication|CommunicationRequest|CompartmentDefinition|Composition|ConceptMap|Condition|Consent|Contract|Coverage|CoverageEligibilityRequest|CoverageEligibilityResponse|DetectedIssue|Device|DeviceDefinition|DeviceMetric|DeviceRequest|DeviceUseStatement|DiagnosticReport|DocumentManifest|DocumentReference|EffectEvidenceSynthesis|Encounter|Endpoint|EnrollmentRequest|EnrollmentResponse|EpisodeOfCare|EventDefinition|Evidence|EvidenceVariable|ExampleScenario|ExplanationOfBenefit|FamilyMemberHistory|Flag|Goal|GraphDefinition|Group|GuidanceResponse|HealthcareService|ImagingStudy|Immunization|ImmunizationEvaluation|ImmunizationRecommendation|ImplementationGuide|InsurancePlan|Invoice|Library|Linkage|List|Location|Measure|MeasureReport|Media|Medication|MedicationAdministration|MedicationDispense|MedicationKnowledge|MedicationRequest|MedicationStatement|MedicinalProduct|MedicinalProductAuthorization|MedicinalProductContraindication|MedicinalProductIndication|MedicinalProductIngredient|MedicinalProductInteraction|MedicinalProductManufactured|MedicinalProductPackaged|MedicinalProductPharmaceutical|MedicinalProductUndesirableEffect|MessageDefinition|MessageHeader|MolecularSequence|NamingSystem|NutritionOrder|Observation|ObservationDefinition|OperationDefinition|OperationOutcome|Organization|OrganizationAffiliation|Patient|PaymentNotice|PaymentReconciliation|Person|PlanDefinition|Practitioner|PractitionerRole|Procedure|Provenance|Questionnaire|QuestionnaireResponse|RelatedPerson|RequestGroup|ResearchDefinition|ResearchElementDefinition|ResearchStudy|ResearchSubject|RiskAssessment|RiskEvidenceSynthesis|Schedule|SearchParameter|ServiceRequest|Slot|Specimen|SpecimenDefinition|StructureDefinition|StructureMap|Subscription|Substance|SubstanceNucleicAcid|SubstancePolymer|SubstanceProtein|SubstanceReferenceInformation|SubstanceSourceMaterial|SubstanceSpecification|SupplyDelivery|SupplyRequest|Task|TerminologyCapabilities|TestReport|TestScript|ValueSet|VerificationResult|VisionPrescription)\\/[A-Za-z0-9\\-\\.]{1,64}";
public final static String NS_SYSTEM_TYPE = "http://hl7.org/fhirpath/System.";
public static final String NS_FHIR_ROOT = "http://hl7.org/fhir";
public static final String NS_CDA_ROOT = "http://hl7.org/cda/stds/core";
}

13
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/model/StructureDefinition.java
View File

@ -4839,4 +4839,17 @@ public class StructureDefinition extends MetadataResource {
return hasVersion() ? getUrl()+"|"+getVersion() : getUrl();
}
public String getTypeName() {
String t = getType();
return StructureDefinitionKind.LOGICAL.equals(getKind()) && t.contains("/") ? t.substring(t.lastIndexOf("/")+1) : t;
}
public String getTypeTail() {
if (getType().contains("/")) {
return getType().substring(getType().lastIndexOf("/")+1);
} else {
return getType();
}
}
}

2
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/profilemodel/gen/PECodeGenerator.java
View File

@ -139,7 +139,7 @@ public class PECodeGenerator {
w(b, "public class "+name+" extends PEGeneratedBase {");
w(b);
if (url != null) {
w(b, " private static final String CANONICAL_URL = \""+url+"\";");
w(b, " public static final String CANONICAL_URL = \""+url+"\";");
w(b);
}
if (enums.length() > 0) {

4
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/utils/LiquidEngine.java
View File

@ -444,4 +444,8 @@ public class LiquidEngine implements IEvaluationContext {
return engine.getWorker().fetchResource(ValueSet.class, url);
}
@Override
public boolean paramIsType(String name, int index) {
return false;
}
}

6
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/utils/StructureMapUtilities.java
View File

@ -252,6 +252,10 @@ public class StructureMapUtilities {
throw new Error("Not Implemented Yet");
}
@Override
public boolean paramIsType(String name, int index) {
return false;
}
}
private IWorkerContext worker;
@ -751,7 +755,7 @@ public class StructureMapUtilities {
}
public StructureMap parse(String text, String srcName) throws FHIRException {
FHIRLexer lexer = new FHIRLexer(text, srcName);
FHIRLexer lexer = new FHIRLexer(text, srcName, true, true);
if (lexer.done())
throw lexer.error("Map Input cannot be empty");
lexer.skipComments();

43
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/utils/sql/Cell.java Normal file
View File

@ -0,0 +1,43 @@
package org.hl7.fhir.r4.utils.sql;
import java.util.ArrayList;
import java.util.List;
import org.hl7.fhir.r4.utils.sql.Cell;
import org.hl7.fhir.r4.utils.sql.Column;
import org.hl7.fhir.r4.utils.sql.Value;
public class Cell {
private Column column;
private List<Value> values = new ArrayList<>();
public Cell(Column column) {
super();
this.column = column;
}
public Cell(Column column, Value value) {
super();
this.column = column;
this.values.add(value);
}
public Column getColumn() {
return column;
}
public List<Value> getValues() {
return values;
}
public Cell copy() {
Cell cell = new Cell(column);
for (Value v : values) {
cell.values.add(v); // values are immutable, so we don't need to clone them
}
return cell;
}
}

102
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/utils/sql/Column.java Normal file
View File

@ -0,0 +1,102 @@
package org.hl7.fhir.r4.utils.sql;
import org.hl7.fhir.r4.utils.sql.Column;
import org.hl7.fhir.r4.utils.sql.ColumnKind;
public class Column {
private String name;
private int length;
private String type;
private ColumnKind kind;
private boolean isColl;
private boolean duplicateReported;
protected Column() {
super();
}
protected Column(String name, boolean isColl, String type, ColumnKind kind) {
super();
this.name = name;
this.isColl = isColl;
this.type = type;
this.kind = kind;
}
public String getName() {
return name;
}
public int getLength() {
return length;
}
public ColumnKind getKind() {
return kind;
}
public void setName(String name) {
this.name = name;
}
public void setLength(int length) {
this.length = length;
}
public void setKind(ColumnKind kind) {
this.kind = kind;
}
public String getType() {
return type;
}
public void setType(String type) {
this.type = type;
}
public boolean isColl() {
return isColl;
}
public void setColl(boolean isColl) {
this.isColl = isColl;
}
public String diff(Column other) {
if (!name.equals(other.name)) {
return "Names differ: '"+name+"' vs '"+other.name+"'";
}
if (kind != ColumnKind.Null && other.kind != ColumnKind.Null) {
if (length != other.length) {
return "Lengths differ: '"+length+"' vs '"+other.length+"'";
}
if (kind != other.kind) {
return "Kinds differ: '"+kind+"' vs '"+other.kind+"'";
}
if (isColl != other.isColl) {
return "Collection status differs: '"+isColl+"' vs '"+other.isColl+"'";
}
} else if (kind == ColumnKind.Null) {
kind = other.kind;
length = other.length;
isColl = other.isColl;
}
return null;
}
public boolean isDuplicateReported() {
return duplicateReported;
}
public void setDuplicateReported(boolean duplicateReported) {
this.duplicateReported = duplicateReported;
}
@Override
public String toString() {
return "Column [name=" + name + ", length=" + length + ", type=" + type + ", kind=" + kind + ", isColl=" + isColl
+ "]";
}
}

5
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/utils/sql/ColumnKind.java Normal file
View File

@ -0,0 +1,5 @@
package org.hl7.fhir.r4.utils.sql;
public enum ColumnKind {
String, DateTime, Integer, Decimal, Binary, Time, Boolean, Complex, Null
}

11
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/utils/sql/Provider.java Normal file
View File

@ -0,0 +1,11 @@
package org.hl7.fhir.r4.utils.sql;
import java.util.List;
import org.hl7.fhir.r4.model.Base;
public interface Provider {
List<Base> fetch(String resourceType);
Base resolveReference(Base rootResource, String ref, String specifiedResourceType);
}

574
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/utils/sql/Runner.java Normal file
View File

@ -0,0 +1,574 @@
package org.hl7.fhir.r4.utils.sql;
import java.math.BigDecimal;
import java.util.ArrayList;
import java.util.List;
import org.apache.commons.codec.binary.Base64;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.exceptions.PathEngineException;
import org.hl7.fhir.r4.context.IWorkerContext;
import org.hl7.fhir.r4.fhirpath.ExpressionNode;
import org.hl7.fhir.r4.fhirpath.FHIRPathEngine;
import org.hl7.fhir.r4.fhirpath.TypeDetails;
import org.hl7.fhir.r4.fhirpath.ExpressionNode.CollectionStatus;
import org.hl7.fhir.r4.fhirpath.FHIRPathEngine.IEvaluationContext;
import org.hl7.fhir.r4.fhirpath.FHIRPathUtilityClasses.FunctionDetails;
import org.hl7.fhir.r4.model.Base;
import org.hl7.fhir.r4.model.Base64BinaryType;
import org.hl7.fhir.r4.model.BaseDateTimeType;
import org.hl7.fhir.r4.model.BooleanType;
import org.hl7.fhir.r4.model.DecimalType;
import org.hl7.fhir.r4.model.IntegerType;
import org.hl7.fhir.r4.model.Property;
import org.hl7.fhir.r4.model.StringType;
import org.hl7.fhir.r4.model.ValueSet;
import org.hl7.fhir.r4.utils.sql.Cell;
import org.hl7.fhir.r4.utils.sql.Column;
import org.hl7.fhir.r4.utils.sql.Provider;
import org.hl7.fhir.r4.utils.sql.Storage;
import org.hl7.fhir.r4.utils.sql.Store;
import org.hl7.fhir.r4.utils.sql.Validator;
import org.hl7.fhir.r4.utils.sql.Value;
import org.hl7.fhir.utilities.json.model.JsonObject;
import org.hl7.fhir.utilities.validation.ValidationMessage;
/**
* How to use the Runner:
*
* create a resource, and fill out:
* the context (supports the FHIRPathEngine)
* a store that handles the output
* a tracker - if you want
*
* Once it's created, you either run it as a batch, or in trickle mode
*
* (1) Batch Mode
*
* * provide a provider
* * call execute() with a ViewDefinition
* * wait... (watch with an observer if you want to track progress)
*
* (2) Trickle Mode
* * call 'prepare', and keep the WorkContext that's returned
* * each time there's a resource to process, call processResource and pass in the workContext and the resource
* * when done, call finish(WorkContext)
*/
public class Runner implements IEvaluationContext {
public interface IRunnerObserver {
public void handleRow(Base resource, int total, int cursor);
}
public class WorkContext {
private JsonObject vd;
private Store store;
protected WorkContext(JsonObject vd) {
super();
this.vd = vd;
}
}
private IWorkerContext context;
private Provider provider;
private Storage storage;
private IRunnerObserver observer;
private List<String> prohibitedNames = new ArrayList<String>();
private FHIRPathEngine fpe;
private String resourceName;
private List<ValidationMessage> issues;
private int resCount;
public IWorkerContext getContext() {
return context;
}
public void setContext(IWorkerContext context) {
this.context = context;
}
public Provider getProvider() {
return provider;
}
public void setProvider(Provider provider) {
this.provider = provider;
}
public Storage getStorage() {
return storage;
}
public void setStorage(Storage storage) {
this.storage = storage;
}
public List<String> getProhibitedNames() {
return prohibitedNames;
}
public void execute(JsonObject viewDefinition) {
execute("$", viewDefinition);
}
public void execute(String path, JsonObject viewDefinition) {
WorkContext wc = prepare(path, viewDefinition);
try {
evaluate(wc);
} finally {
finish(wc);
}
}
private void evaluate(WorkContext wc) {
List<Base> data = provider.fetch(resourceName);
int i = 0;
for (Base b : data) {
if (observer != null) {
observer.handleRow(b, data.size(), i);
}
processResource(wc.vd, wc.store, b);
i++;
}
}
public WorkContext prepare(String path, JsonObject viewDefinition) {
WorkContext wc = new WorkContext(viewDefinition);
if (context == null) {
throw new FHIRException("No context provided");
}
fpe = new FHIRPathEngine(context);
fpe.setHostServices(this);
fpe.setEmitSQLonFHIRWarning(true);
if (viewDefinition == null) {
throw new FHIRException("No viewDefinition provided");
}
if (provider == null) {
throw new FHIRException("No provider provided");
}
if (storage == null) {
throw new FHIRException("No storage provided");
}
Validator validator = new Validator(context, fpe, prohibitedNames, storage.supportsArrays(), storage.supportsComplexTypes(), storage.needsName());
validator.checkViewDefinition(path, viewDefinition);
issues = validator.getIssues();
validator.dump();
validator.check();
resourceName = validator.getResourceName();
wc.store = storage.createStore(wc.vd.asString("name"), (List<Column>) wc.vd.getUserData("columns"));
return wc;
}
public void processResource(WorkContext wc, Base b) {
if (observer != null) {
observer.handleRow(b, -1, resCount);
}
processResource(wc.vd, wc.store, b);
resCount++;
wc.store.flush();
}
private void processResource(JsonObject vd, Store store, Base b) {
boolean ok = true;
for (JsonObject w : vd.getJsonObjects("where")) {
String expr = w.asString("path");
ExpressionNode node = fpe.parse(expr);
boolean pass = fpe.evaluateToBoolean(vd, b, b, b, node);
if (!pass) {
ok = false;
break;
}
}
if (ok) {
List<List<Cell>> rows = new ArrayList<>();
rows.add(new ArrayList<Cell>());
for (JsonObject select : vd.getJsonObjects("select")) {
executeSelect(vd, select, b, rows);
}
for (List<Cell> row : rows) {
storage.addRow(store, row);
}
}
}
public void finish(WorkContext wc) {
storage.finish(wc.store);
}
private void executeSelect(JsonObject vd, JsonObject select, Base b, List<List<Cell>> rows) {
List<Base> focus = new ArrayList<>();
if (select.has("forEach")) {
focus.addAll(executeForEach(vd, select, b));
} else if (select.has("forEachOrNull")) {
focus.addAll(executeForEachOrNull(vd, select, b));
if (focus.isEmpty()) {
List<Column> columns = (List<Column>) select.getUserData("columns");
for (List<Cell> row : rows) {
for (Column c : columns) {
Cell cell = cell(row, c.getName());
if (cell == null) {
row.add(new Cell(c, null));
}
}
}
return;
}
} else {
focus.add(b);
}
// } else if (select.has("unionAll")) {
// focus.addAll(executeUnion(select, b));
List<List<Cell>> tempRows = new ArrayList<>();
tempRows.addAll(rows);
rows.clear();
for (Base f : focus) {
List<List<Cell>> rowsToAdd = cloneRows(tempRows);
for (JsonObject column : select.getJsonObjects("column")) {
executeColumn(vd, column, f, rowsToAdd);
}
for (JsonObject sub : select.getJsonObjects("select")) {
executeSelect(vd, sub, f, rowsToAdd);
}
executeUnionAll(vd, select.getJsonObjects("unionAll"), f, rowsToAdd);
rows.addAll(rowsToAdd);
}
}
private void executeUnionAll(JsonObject vd, List<JsonObject> unionList, Base b, List<List<Cell>> rows) {
if (unionList.isEmpty()) {
return;
}
List<List<Cell>> sourceRows = new ArrayList<>();
sourceRows.addAll(rows);
rows.clear();
for (JsonObject union : unionList) {
List<List<Cell>> tempRows = new ArrayList<>();
tempRows.addAll(sourceRows);
executeSelect(vd, union, b, tempRows);
rows.addAll(tempRows);
}
}
private List<List<Cell>> cloneRows(List<List<Cell>> rows) {
List<List<Cell>> list = new ArrayList<>();
for (List<Cell> row : rows) {
list.add(cloneRow(row));
}
return list;
}
private List<Cell> cloneRow(List<Cell> cells) {
List<Cell> list = new ArrayList<>();
for (Cell cell : cells) {
list.add(cell.copy());
}
return list;
}
private List<Base> executeForEach(JsonObject vd, JsonObject focus, Base b) {
ExpressionNode n = (ExpressionNode) focus.getUserData("forEach");
List<Base> result = new ArrayList<>();
result.addAll(fpe.evaluate(vd, b, n));
return result;
}
private List<Base> executeForEachOrNull(JsonObject vd, JsonObject focus, Base b) {
ExpressionNode n = (ExpressionNode) focus.getUserData("forEachOrNull");
List<Base> result = new ArrayList<>();
result.addAll(fpe.evaluate(vd, b, n));
return result;
}
private void executeColumn(JsonObject vd, JsonObject column, Base b, List<List<Cell>> rows) {
ExpressionNode n = (ExpressionNode) column.getUserData("path");
List<Base> bl2 = new ArrayList<>();
if (b != null) {
bl2.addAll(fpe.evaluate(vd, b, n));
}
Column col = (Column) column.getUserData("column");
if (col == null) {
System.out.println("Error");
} else {
for (List<Cell> row : rows) {
Cell c = cell(row, col.getName());
if (c == null) {
c = new Cell(col);
row.add(c);
}
if (!bl2.isEmpty()) {
if (bl2.size() + c.getValues().size() > 1) {
// this is a problem if collection != true or if the storage can't deal with it
// though this should've been picked up before now - but there are circumstances where it wouldn't be
if (!c.getColumn().isColl()) {
throw new FHIRException("The column "+c.getColumn().getName()+" is not allowed multiple values, but at least one row has multiple values");
}
}
for (Base b2 : bl2) {
c.getValues().add(genValue(c.getColumn(), b2));
}
}
}
}
}
private Value genValue(Column column, Base b) {
if (column.getKind() == null) {
throw new FHIRException("Attempt to add a type "+b.fhirType()+" to an unknown column type (null) for column "+column.getName()); // can't happen
}
switch (column.getKind()) {
case Binary:
if (b instanceof Base64BinaryType) {
Base64BinaryType bb = (Base64BinaryType) b;
return Value.makeBinary(bb.primitiveValue(), bb.getValue());
} else if (b.isBooleanPrimitive()) { // ElementModel
return Value.makeBinary(b.primitiveValue(), Base64.decodeBase64(b.primitiveValue()));
} else {
throw new FHIRException("Attempt to add a type "+b.fhirType()+" to a binary column for column "+column.getName());
}
case Boolean:
if (b instanceof BooleanType) {
BooleanType bb = (BooleanType) b;
return Value.makeBoolean(bb.primitiveValue(), bb.booleanValue());
} else if (b.isBooleanPrimitive()) { // ElementModel
return Value.makeBoolean(b.primitiveValue(), "true".equals(b.primitiveValue()));
} else {
throw new FHIRException("Attempt to add a type "+b.fhirType()+" to a boolean column for column "+column.getName());
}
case Complex:
if (b.isPrimitive()) {
throw new FHIRException("Attempt to add a primitive type "+b.fhirType()+" to a complex column for column "+column.getName());
} else {
return Value.makeComplex(b);
}
case DateTime:
if (b instanceof BaseDateTimeType) {
BaseDateTimeType d = (BaseDateTimeType) b;
return Value.makeDate(d.primitiveValue(), d.getValue());
} else if (b.isPrimitive() && b.isDateTime()) { // ElementModel
return Value.makeDate(b.primitiveValue(), b.dateTimeValue().getValue());
} else {
throw new FHIRException("Attempt to add a type "+b.fhirType()+" to an integer column for column "+column.getName());
}
case Decimal:
if (b instanceof DecimalType) {
DecimalType d = (DecimalType) b;
return Value.makeDecimal(d.primitiveValue(), d.getValue());
} else if (b.isPrimitive()) { // ElementModel
return Value.makeDecimal(b.primitiveValue(), new BigDecimal(b.primitiveValue()));
} else {
throw new FHIRException("Attempt to add a type "+b.fhirType()+" to an integer column for column "+column.getName());
}
case Integer:
if (b instanceof IntegerType) {
IntegerType i = (IntegerType) b;
return Value.makeInteger(i.primitiveValue(), i.getValue());
} else if (b.isPrimitive()) { // ElementModel
return Value.makeInteger(b.primitiveValue(), Integer.valueOf(b.primitiveValue()));
} else {
throw new FHIRException("Attempt to add a type "+b.fhirType()+" to an integer column for column "+column.getName());
}
case String:
if (b.isPrimitive()) {
return Value.makeString(b.primitiveValue());
} else {
throw new FHIRException("Attempt to add a complex type "+b.fhirType()+" to a string column for column "+column.getName());
}
case Time:
if (b.fhirType().equals("time")) {
return Value.makeString(b.primitiveValue());
} else {
throw new FHIRException("Attempt to add a type "+b.fhirType()+" to a time column for column "+column.getName());
}
default:
throw new FHIRException("Attempt to add a type "+b.fhirType()+" to an unknown column type for column "+column.getName());
}
}
private Column column(String columnName, List<Column> columns) {
for (Column t : columns) {
if (t.getName().equalsIgnoreCase(columnName)) {
return t;
}
}
return null;
}
private Cell cell(List<Cell> cells, String columnName) {
for (Cell t : cells) {
if (t.getColumn().getName().equalsIgnoreCase(columnName)) {
return t;
}
}
return null;
}
@Override
public List<Base> resolveConstant(FHIRPathEngine engine, Object appContext, String name, boolean beforeContext, boolean explicitConstant) throws PathEngineException {
List<Base> list = new ArrayList<Base>();
if (explicitConstant) {
JsonObject vd = (JsonObject) appContext;
JsonObject constant = findConstant(vd, name);
if (constant != null) {
Base b = (Base) constant.getUserData("value");
if (b != null) {
list.add(b);
}
}
}
return list;
}
@Override
public TypeDetails resolveConstantType(FHIRPathEngine engine, Object appContext, String name, boolean explicitConstant) throws PathEngineException {
if (explicitConstant) {
JsonObject vd = (JsonObject) appContext;
JsonObject constant = findConstant(vd, name.substring(1));
if (constant != null) {
Base b = (Base) constant.getUserData("value");
if (b != null) {
return new TypeDetails(CollectionStatus.SINGLETON, b.fhirType());
}
}
}
return null;
}
private JsonObject findConstant(JsonObject vd, String name) {
for (JsonObject o : vd.getJsonObjects("constant")) {
if (name.equals(o.asString("name"))) {
return o;
}
}
return null;
}
@Override
public boolean log(String argument, List<Base> focus) {
throw new Error("Not implemented yet: log");
}
@Override
public FunctionDetails resolveFunction(FHIRPathEngine engine, String functionName) {
switch (functionName) {
case "getResourceKey" : return new FunctionDetails("Unique Key for resource", 0, 0);
case "getReferenceKey" : return new FunctionDetails("Unique Key for resource that is the target of the reference", 0, 1);
default: return null;
}
}
@Override
public TypeDetails checkFunction(FHIRPathEngine engine, Object appContext, String functionName, TypeDetails focus, List<TypeDetails> parameters) throws PathEngineException {
switch (functionName) {
case "getResourceKey" : return new TypeDetails(CollectionStatus.SINGLETON, "string");
case "getReferenceKey" : return new TypeDetails(CollectionStatus.SINGLETON, "string");
default: throw new Error("Not known: "+functionName);
}
}
@Override
public List<Base> executeFunction(FHIRPathEngine engine, Object appContext, List<Base> focus, String functionName, List<List<Base>> parameters) {
switch (functionName) {
case "getResourceKey" : return executeResourceKey(focus);
case "getReferenceKey" : return executeReferenceKey(null, focus, parameters);
default: throw new Error("Not known: "+functionName);
}
}
private List<Base> executeResourceKey(List<Base> focus) {
List<Base> base = new ArrayList<Base>();
if (focus.size() == 1) {
Base res = focus.get(0);
if (!res.hasUserData("Storage.key")) {
String key = storage.getKeyForSourceResource(res);
if (key == null) {
throw new FHIRException("Unidentified resource: "+res.fhirType()+"/"+res.getIdBase());
} else {
res.setUserData("Storage.key", key);
}
}
base.add(new StringType(res.getUserString("Storage.key")));
}
return base;
}
private List<Base> executeReferenceKey(Base rootResource, List<Base> focus, List<List<Base>> parameters) {
String rt = null;
if (parameters.size() > 0) {
rt = parameters.get(0).get(0).primitiveValue();
if (rt.startsWith("FHIR.")) {
rt = rt.substring(5);
}
}
List<Base> base = new ArrayList<Base>();
if (focus.size() == 1) {
Base res = focus.get(0);
String ref = null;
if (res.fhirType().equals("Reference")) {
ref = getRef(res);
} else if (res.isPrimitive()) {
ref = res.primitiveValue();
} else {
throw new FHIRException("Unable to generate a reference key based on a "+res.fhirType());
}
if (ref != null) {
Base target = provider.resolveReference(rootResource, ref, rt);
if (target != null) {
if (!res.hasUserData("Storage.key")) {
String key = storage.getKeyForTargetResource(target);
if (key == null) {
throw new FHIRException("Unidentified resource: "+res.fhirType()+"/"+res.getIdBase());
} else {
res.setUserData("Storage.key", key);
}
}
base.add(new StringType(res.getUserString("Storage.key")));
}
}
}
return base;
}
private String getRef(Base res) {
Property prop = res.getChildByName("reference");
if (prop != null && prop.getValues().size() == 1) {
return prop.getValues().get(0).primitiveValue();
}
return null;
}
@Override
public Base resolveReference(FHIRPathEngine engine, Object appContext, String url, Base refContext) throws FHIRException {
throw new Error("Not implemented yet: resolveReference");
}
@Override
public boolean conformsToProfile(FHIRPathEngine engine, Object appContext, Base item, String url) throws FHIRException {
throw new Error("Not implemented yet: conformsToProfile");
}
@Override
public ValueSet resolveValueSet(FHIRPathEngine engine, Object appContext, String url) {
throw new Error("Not implemented yet: resolveValueSet");
}
@Override
public boolean paramIsType(String name, int index) {
return "getReferenceKey".equals(name);
}
public List<ValidationMessage> getIssues() {
return issues;
}
}

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package org.hl7.fhir.r4.utils.sql;
import java.util.List;
import org.hl7.fhir.r4.utils.sql.Validator.TrueFalseOrUnknown;
import org.hl7.fhir.r4.model.Base;
import org.hl7.fhir.r4.utils.sql.Cell;
import org.hl7.fhir.r4.utils.sql.Column;
import org.hl7.fhir.r4.utils.sql.Store;
public interface Storage {
TrueFalseOrUnknown supportsArrays();
TrueFalseOrUnknown supportsComplexTypes();
Store createStore(String name, List<Column> columns);
void addRow(Store store, List<Cell> cells);
void finish(Store store);
TrueFalseOrUnknown needsName();
String getKeyForSourceResource(Base res);
String getKeyForTargetResource(Base res);
}

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package org.hl7.fhir.r4.utils.sql;
import java.util.List;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.r4.utils.sql.Validator.TrueFalseOrUnknown;
import org.hl7.fhir.r4.model.Base;
import org.hl7.fhir.r4.utils.sql.Cell;
import org.hl7.fhir.r4.utils.sql.Column;
import org.hl7.fhir.r4.utils.sql.Storage;
import org.hl7.fhir.r4.utils.sql.Store;
import org.hl7.fhir.r4.utils.sql.Value;
import org.hl7.fhir.utilities.json.model.JsonArray;
import org.hl7.fhir.utilities.json.model.JsonBoolean;
import org.hl7.fhir.utilities.json.model.JsonElement;
import org.hl7.fhir.utilities.json.model.JsonNull;
import org.hl7.fhir.utilities.json.model.JsonNumber;
import org.hl7.fhir.utilities.json.model.JsonObject;
import org.hl7.fhir.utilities.json.model.JsonString;
public class StorageJson implements Storage {
private String name;
private JsonArray rows;
@Override
public TrueFalseOrUnknown supportsArrays() {
return TrueFalseOrUnknown.TRUE;
}
@Override
public Store createStore(String name, List<Column> columns) {
this.name = name;
this.rows = new JsonArray();
return new Store(name); // we're not doing anything with this
}
@Override
public void addRow(Store store, List<Cell> cells) {
JsonObject row = new JsonObject();
rows.add(row);
for (Cell cell : cells) {
if (cell.getColumn().isColl() || cell.getValues().size() > 1) {
JsonArray arr = new JsonArray();
row.add(cell.getColumn().getName(), arr);
for (Value value : cell.getValues()) {
arr.add(makeJsonNode(value));
}
} else if (cell.getValues().size() == 0) {
row.add(cell.getColumn().getName(), new JsonNull());
} else {
row.add(cell.getColumn().getName(), makeJsonNode(cell.getValues().get(0)));
}
}
}
private JsonElement makeJsonNode(Value value) {
if (value == null) {
return new JsonNull();
} else if (value.getValueInt() != null) {
return new JsonNumber(value.getValueInt().intValue());
}
if (value.getValueBoolean() != null) {
return new JsonBoolean(value.getValueBoolean().booleanValue());
}
if (value.getValueDecimal() != null) {
return new JsonNumber(value.getValueDecimal().toPlainString());
}
return new JsonString(value.getValueString());
}
@Override
public void finish(Store store) {
// nothing
}
public String getName() {
return name;
}
public JsonArray getRows() {
return rows;
}
@Override
public TrueFalseOrUnknown supportsComplexTypes() {
return TrueFalseOrUnknown.TRUE;
}
@Override
public TrueFalseOrUnknown needsName() {
return TrueFalseOrUnknown.FALSE;
}
@Override
public String getKeyForSourceResource(Base res) {
return res.fhirType()+"/"+res.getIdBase();
}
@Override
public String getKeyForTargetResource(Base res) {
return res.fhirType()+"/"+res.getIdBase();
}
}

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package org.hl7.fhir.r4.utils.sql;
import java.sql.Connection;
import java.sql.PreparedStatement;
import java.sql.SQLType;
import java.util.List;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.r4.utils.sql.Validator.TrueFalseOrUnknown;
import org.hl7.fhir.r4.model.Base;
import org.hl7.fhir.r4.utils.sql.Cell;
import org.hl7.fhir.r4.utils.sql.Column;
import org.hl7.fhir.r4.utils.sql.ColumnKind;
import org.hl7.fhir.r4.utils.sql.Storage;
import org.hl7.fhir.r4.utils.sql.Store;
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
public class StorageSqlite3 implements Storage {
public static class SQLiteStore extends Store {
private PreparedStatement p;
protected SQLiteStore(String name, PreparedStatement p) {
super(name);
this.p = p;
}
public PreparedStatement getP() {
return p;
}
}
private Connection conn;
private int nextKey = 0;
public StorageSqlite3(Connection conn) {
super();
this.conn = conn;
}
@Override
public Store createStore(String name, List<Column> columns) {
try {
CommaSeparatedStringBuilder fields = new CommaSeparatedStringBuilder(", ");
CommaSeparatedStringBuilder values = new CommaSeparatedStringBuilder(", ");
StringBuilder b = new StringBuilder();
b.append("Create Table "+name+" ( ");
b.append("ViewRowKey integer NOT NULL");
for (Column column : columns) {
b.append(", "+column.getName()+" "+sqliteType(column.getKind())+" NULL"); // index columns are always nullable
fields.append(column.getName());
values.append("?");
}
b.append(", PRIMARY KEY (ViewRowKey))\r\n");
conn.createStatement().execute(b.toString());
String isql = "Insert into "+name+" (ViewRowKey, "+fields.toString()+") values (?, "+values.toString()+")";
PreparedStatement psql = conn.prepareStatement(isql);
return new SQLiteStore(name, psql);
} catch (Exception e) {
throw new FHIRException(e);
}
}
private String sqliteType(ColumnKind type) {
switch (type) {
case DateTime: return "Text";
case Decimal: return "Real";
case Integer: return "Integer";
case String: return "Text";
case Time: return "Text";
case Binary: return "Text";
case Boolean: return "Integer";
case Complex: throw new FHIRException("SQLite runner does not handle complexes");
}
return null;
}
@Override
public void addRow(Store store, List<Cell> cells) {
try {
SQLiteStore sqls = (SQLiteStore) store;
PreparedStatement p = sqls.getP();
p.setInt(1, ++nextKey);
for (int i = 0; i < cells.size(); i++) {
Cell c = cells.get(i);
switch (c.getColumn().getKind()) {
case Null:
p.setNull(i+2, java.sql.Types.NVARCHAR);
case Binary:
p.setBytes(i+2, c.getValues().size() == 0 ? null : c.getValues().get(0).getValueBinary());
break;
case Boolean:
p.setBoolean(i+2, c.getValues().size() == 0 ? false : c.getValues().get(0).getValueBoolean().booleanValue());
break;
case DateTime:
p.setDate(i+2, c.getValues().size() == 0 ? null : new java.sql.Date(c.getValues().get(0).getValueDate().getTime()));
break;
case Decimal:
p.setString(i+2, c.getValues().size() == 0 ? null : c.getValues().get(0).getValueString());
break;
case Integer:
p.setInt(i+2, c.getValues().size() == 0 ? 0 : c.getValues().get(0).getValueInt().intValue());
break;
case String:
p.setString(i+2, c.getValues().size() == 0 ? null : c.getValues().get(0).getValueString());
break;
case Time:
p.setString(i+2, c.getValues().size() == 0 ? null : c.getValues().get(0).getValueString());
break;
case Complex: throw new FHIRException("SQLite runner does not handle complexes");
}
}
p.execute();
} catch (Exception e) {
throw new FHIRException(e);
}
}
@Override
public void finish(Store store) {
// nothing
}
@Override
public TrueFalseOrUnknown supportsArrays() {
return TrueFalseOrUnknown.FALSE;
}
@Override
public TrueFalseOrUnknown supportsComplexTypes() {
return TrueFalseOrUnknown.FALSE;
}
@Override
public TrueFalseOrUnknown needsName() {
return TrueFalseOrUnknown.TRUE;
}
@Override
public String getKeyForSourceResource(Base res) {
throw new Error("Key management for resources isn't decided yet");
}
@Override
public String getKeyForTargetResource(Base res) {
throw new Error("Key management for resources isn't decided yet");
}
}

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package org.hl7.fhir.r4.utils.sql;
public class Store {
private String name;
protected Store(String name) {
super();
this.name = name;
}
public String getName() {
return name;
}
public void flush() {
}
}

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package org.hl7.fhir.r4.utils.sql;
import java.util.ArrayList;
import java.util.Collection;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import javax.annotation.Nonnull;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.r4.utils.sql.Validator.TrueFalseOrUnknown;
import org.hl7.fhir.r4.context.IWorkerContext;
import org.hl7.fhir.r4.fhirpath.ExpressionNode;
import org.hl7.fhir.r4.fhirpath.FHIRPathEngine;
import org.hl7.fhir.r4.fhirpath.TypeDetails;
import org.hl7.fhir.r4.formats.JsonParser;
import org.hl7.fhir.r4.model.Base64BinaryType;
import org.hl7.fhir.r4.model.BooleanType;
import org.hl7.fhir.r4.model.CanonicalType;
import org.hl7.fhir.r4.model.CodeType;
import org.hl7.fhir.r4.model.DateTimeType;
import org.hl7.fhir.r4.model.DateType;
import org.hl7.fhir.r4.model.DecimalType;
import org.hl7.fhir.r4.model.IdType;
import org.hl7.fhir.r4.model.InstantType;
import org.hl7.fhir.r4.model.IntegerType;
import org.hl7.fhir.r4.model.OidType;
import org.hl7.fhir.r4.model.PositiveIntType;
import org.hl7.fhir.r4.model.PrimitiveType;
import org.hl7.fhir.r4.model.StringType;
import org.hl7.fhir.r4.model.TimeType;
import org.hl7.fhir.r4.model.UnsignedIntType;
import org.hl7.fhir.r4.model.UriType;
import org.hl7.fhir.r4.model.UrlType;
import org.hl7.fhir.r4.model.UuidType;
import org.hl7.fhir.r4.utils.sql.Column;
import org.hl7.fhir.r4.utils.sql.ColumnKind;
import org.hl7.fhir.r4.fhirpath.ExpressionNode.CollectionStatus;
import org.hl7.fhir.r4.fhirpath.FHIRPathEngine.IssueMessage;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.json.model.JsonArray;
import org.hl7.fhir.utilities.json.model.JsonBoolean;
import org.hl7.fhir.utilities.json.model.JsonElement;
import org.hl7.fhir.utilities.json.model.JsonNumber;
import org.hl7.fhir.utilities.json.model.JsonObject;
import org.hl7.fhir.utilities.json.model.JsonProperty;
import org.hl7.fhir.utilities.json.model.JsonString;
import org.hl7.fhir.utilities.validation.ValidationMessage;
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueSeverity;
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
public class Validator {
public enum TrueFalseOrUnknown {
TRUE, FALSE, UNKNOWN
}
private IWorkerContext context;
private FHIRPathEngine fpe;
private List<String> prohibitedNames = new ArrayList<String>();
private List<ValidationMessage> issues = new ArrayList<ValidationMessage>();
private TrueFalseOrUnknown supportsArrays;
private TrueFalseOrUnknown supportsComplexTypes;
private TrueFalseOrUnknown supportsNeedsName;
private String resourceName;
private String name;
public Validator(IWorkerContext context, FHIRPathEngine fpe, List<String> prohibitedNames, @Nonnull TrueFalseOrUnknown supportsArrays, @Nonnull TrueFalseOrUnknown supportsComplexTypes, @Nonnull TrueFalseOrUnknown supportsNeedsName) {
super();
this.context = context;
this.fpe = fpe;
this.prohibitedNames = prohibitedNames;
this.supportsArrays = supportsArrays;
this.supportsComplexTypes = supportsComplexTypes;
this.supportsNeedsName = supportsNeedsName;
}
public String getResourceName() {
return resourceName;
}
public void checkViewDefinition(String path, JsonObject viewDefinition) {
checkProperties(viewDefinition, path, "resourceType", "url", "identifier", "name", "version", "title", "status", "experimental", "date", "publisher", "contact", "description", "useContext", "copyright", "resource", "constant", "select", "where");
JsonElement nameJ = viewDefinition.get("name");
if (nameJ == null) {
if (supportsNeedsName == null) {
hint(path, viewDefinition, "No name provided. A name is required in many contexts where a ViewDefinition is used");
} else if (supportsNeedsName == TrueFalseOrUnknown.TRUE) {
error(path, viewDefinition, "No name provided", IssueType.REQUIRED);
}
} else if (!(nameJ instanceof JsonString)) {
error(path, viewDefinition, "name must be a string", IssueType.INVALID);
} else {
name = nameJ.asString();
if (!isValidName(name)) {
error(path+".name", nameJ, "The name '"+name+"' is not valid", IssueType.INVARIANT);
}
if (prohibitedNames.contains(name)) {
error(path, nameJ, "The name '"+name+"' on the viewDefinition is not allowed in this context", IssueType.BUSINESSRULE);
}
}
List<Column> columns = new ArrayList<>();
viewDefinition.setUserData("columns", columns);
JsonElement resourceNameJ = viewDefinition.get("resource");
if (resourceNameJ == null) {
error(path, viewDefinition, "No resource specified", IssueType.REQUIRED);
} else if (!(resourceNameJ instanceof JsonString)) {
error(path, viewDefinition, "resource must be a string", IssueType.INVALID);
} else {
resourceName = resourceNameJ.asString();
if (!context.getResourceNamesAsSet().contains(resourceName)) {
error(path+".name", nameJ, "The name '"+resourceName+"' is not a valid resource", IssueType.BUSINESSRULE);
} else {
int i = 0;
if (checkAllObjects(path, viewDefinition, "constant")) {
for (JsonObject constant : viewDefinition.getJsonObjects("constant")) {
checkConstant(path+".constant["+i+"]", constant);
i++;
}
}
i = 0;
if (checkAllObjects(path, viewDefinition, "where")) {
for (JsonObject where : viewDefinition.getJsonObjects("where")) {
checkWhere(viewDefinition, path+".where["+i+"]", where);
i++;
}
}
TypeDetails t = new TypeDetails(CollectionStatus.SINGLETON, resourceName);
i = 0;
if (checkAllObjects(path, viewDefinition, "select")) {
for (JsonObject select : viewDefinition.getJsonObjects("select")) {
columns.addAll(checkSelect(viewDefinition, path+".select["+i+"]", select, t));
i++;
}
if (i == 0) {
error(path, viewDefinition, "No select statements found", IssueType.REQUIRED);
}
}
}
}
}
private List<Column> checkSelect(JsonObject vd, String path, JsonObject select, TypeDetails t) {
List<Column> columns = new ArrayList<>();
select.setUserData("columns", columns);
checkProperties(select, path, "column", "select", "forEach", "forEachOrNull", "unionAll");
if (select.has("forEach")) {
t = checkForEach(vd, path, select, select.get("forEach"), t);
} else if (select.has("forEachOrNull")) {
t = checkForEachOrNull(vd, path, select, select.get("forEachOrNull"), t);
}
if (t != null) {
if (select.has("column")) {
JsonElement a = select.get("column");
if (!(a instanceof JsonArray)) {
error(path+".column", a, "column is not an array", IssueType.INVALID);
} else {
int i = 0;
for (JsonElement e : ((JsonArray) a)) {
if (!(e instanceof JsonObject)) {
error(path+".column["+i+"]", a, "column["+i+"] is a "+e.type().toName()+" not an object", IssueType.INVALID);
} else {
columns.add(checkColumn(vd, path+".column["+i+"]", (JsonObject) e, t));
}
}
}
}
if (select.has("select")) {
JsonElement a = select.get("select");
if (!(a instanceof JsonArray)) {
error(path+".select", a, "select is not an array", IssueType.INVALID);
} else {
int i = 0;
for (JsonElement e : ((JsonArray) a)) {
if (!(e instanceof JsonObject)) {
error(path+".select["+i+"]", e, "select["+i+"] is not an object", IssueType.INVALID);
} else {
columns.addAll(checkSelect(vd, path+".select["+i+"]", (JsonObject) e, t));
}
}
}
}
if (select.has("unionAll")) {
columns.addAll(checkUnion(vd, path, select, select.get("unionAll"), t));
}
if (columns.isEmpty()) {
error(path, select, "The select has no columns or selects", IssueType.REQUIRED);
} else {
checkColumnNamesUnique(select, path, columns);
}
}
return columns;
}
private void checkColumnNamesUnique(JsonObject select, String path, List<Column> columns) {
Set<String> names = new HashSet<>();
for (Column col : columns) {
if (col != null) {
if (!names.contains(col.getName())) {
names.add(col.getName());
} else if (!col.isDuplicateReported()) {
col.setDuplicateReported(true);
error(path, select, "Duplicate Column Name '"+col.getName()+"'", IssueType.BUSINESSRULE);
}
}
}
}
private List<Column> checkUnion(JsonObject vd, String path, JsonObject focus, JsonElement expression, TypeDetails t) {
JsonElement a = focus.get("unionAll");
if (!(a instanceof JsonArray)) {
error(path+".unionAll", a, "union is not an array", IssueType.INVALID);
return null;
} else {
List<List<Column>> unionColumns = new ArrayList<>();
int i = 0;
for (JsonElement e : ((JsonArray) a)) {
if (!(e instanceof JsonObject)) {
error(path+".unionAll["+i+"]", e, "unionAll["+i+"] is not an object", IssueType.INVALID);
} else {
unionColumns.add(checkSelect(vd, path+".unionAll["+i+"]", (JsonObject) e, t));
}
i++;
}
if (i < 2) {
warning(path+".unionAll", a, "unionAll should have more than one item");
}
if (unionColumns.size() > 1) {
List<Column> columns = unionColumns.get(0);
for (int ic = 1; ic < unionColumns.size(); ic++) {
String diff = columnDiffs(columns, unionColumns.get(ic));
if (diff != null) {
error(path+".unionAll["+i+"]", ((JsonArray) a).get(ic), "unionAll["+i+"] column definitions do not match: "+diff, IssueType.INVALID);
}
}
a.setUserData("colunms", columns);
return columns;
}
}
return null;
}
private String columnDiffs(List<Column> list1, List<Column> list2) {
if (list1.size() == list2.size()) {
for (int i = 0; i < list1.size(); i++) {
if (list1.get(i) == null || list2.get(i) == null) {
return null; // just suppress any addition errors
}
String diff = list1.get(i).diff(list2.get(i));
if (diff != null) {
return diff+" at #"+i;
}
}
return null;
} else {
return "Column counts differ: "+list1.size()+" vs "+list2.size();
}
}
private Column checkColumn(JsonObject vd, String path, JsonObject column, TypeDetails t) {
checkProperties(column, path, "path", "name", "description", "collection", "type", "tag");
if (!column.has("path")) {
error(path, column, "no path found", IssueType.INVALID);
} else {
JsonElement expression = column.get("path");
if (!(expression instanceof JsonString)) {
error(path+".forEach", expression, "forEach is not a string", IssueType.INVALID);
} else {
String expr = expression.asString();
List<IssueMessage> warnings = new ArrayList<>();
TypeDetails td = null;
ExpressionNode node = null;
try {
node = fpe.parse(expr);
column.setUserData("path", node);
td = fpe.checkOnTypes(vd, resourceName, t, node, warnings);
} catch (Exception e) {
error(path, expression, e.getMessage(), IssueType.INVALID);
}
if (td != null && node != null) {
for (IssueMessage s : warnings) {
warning(path+".path", expression, s.getMessage());
}
String columnName = null;
JsonElement nameJ = column.get("name");
if (nameJ != null) {
if (nameJ instanceof JsonString) {
columnName = nameJ.asString();
if (!isValidName(columnName)) {
error(path+".name", nameJ, "The name '"+columnName+"' is not valid", IssueType.VALUE);
}
} else {
error(path+".name", nameJ, "name must be a string", IssueType.INVALID);
}
}
if (columnName == null) {
List<String> names = node.getDistalNames();
if (names.size() == 1 && names.get(0) != null) {
columnName = names.get(0);
if (!isValidName(columnName)) {
error(path+".path", expression, "A column name is required. The natural name to chose is '"+columnName+"' (from the path)", IssueType.INVARIANT);
} else {
error(path, column, "A column name is required", IssueType.REQUIRED);
}
} else {
error(path, column, "A column name is required", IssueType.REQUIRED);
}
}
// ok, name is sorted!
if (columnName != null) {
column.setUserData("name", columnName);
boolean isColl = false;
if (column.has("collection")) {
JsonElement collectionJ = column.get("collection");
if (!(collectionJ instanceof JsonBoolean)) {
error(path+".collection", collectionJ, "collection is not a boolean", IssueType.INVALID);
} else {
boolean collection = collectionJ.asJsonBoolean().asBoolean();
if (collection) {
isColl = true;
}
}
}
if (isColl) {
if (td.getCollectionStatus() == CollectionStatus.SINGLETON) {
hint(path, column, "collection is true, but the path statement(s) ('"+expr+"') can only return single values for the column '"+columnName+"'");
}
if (supportsArrays == TrueFalseOrUnknown.UNKNOWN) {
warning(path, expression, "The column '"+columnName+"' is defined as a collection, but collections are not supported in all execution contexts");
} else if (supportsArrays == TrueFalseOrUnknown.FALSE) {
if (td.getCollectionStatus() == CollectionStatus.SINGLETON) {
warning(path, expression, "The column '"+columnName+"' is defined as a collection, but this is not allowed in the current execution context. Note that the path '"+expr+"' can only return a single value");
} else {
warning(path, expression, "The column '"+columnName+"' is defined as a collection, but this is not allowed in the current execution context. Note that the path '"+expr+"' can return a collection of values");
}
}
} else {
if (td.getCollectionStatus() != CollectionStatus.SINGLETON) {
warning(path, column, "This column is not defined as a collection, but the path statement '"+expr+"' might return multiple values for the column '"+columnName+"' for some inputs");
}
}
Set<String> types = new HashSet<>();
if (node.isNullSet()) {
types.add("null");
} else {
// ok collection is sorted
for (String type : td.getTypes()) {
types.add(simpleType(type));
}
JsonElement typeJ = column.get("type");
if (typeJ != null) {
if (typeJ instanceof JsonString) {
String type = typeJ.asString();
if (!td.hasType(type)) {
error(path+".type", typeJ, "The path expression ('"+expr+"') does not return a value of the type '"+type+"' - found "+td.describe(), IssueType.VALUE);
} else {
types.clear();
types.add(simpleType(type));
}
} else {
error(path+".type", typeJ, "type must be a string", IssueType.INVALID);
}
}
}
if (types.size() != 1) {
error(path, column, "Unable to determine a type (found "+td.describe()+")", IssueType.BUSINESSRULE);
} else {
String type = types.iterator().next();
boolean ok = false;
if (!isSimpleType(type) && !"null".equals(type)) {
if (supportsComplexTypes == TrueFalseOrUnknown.UNKNOWN) {
warning(path, expression, "Column from path '"+expr+"' is a complex type ('"+type+"'). This is not supported in some Runners");
} else if (supportsComplexTypes == TrueFalseOrUnknown.FALSE) {
error(path, expression, "Column from path '"+expr+"' is a complex type ('"+type+"') but this is not allowed in this context", IssueType.BUSINESSRULE);
} else {
ok = true;
}
} else {
ok = true;
}
if (ok) {
Column col = new Column(columnName, isColl, type, kindForType(type));
column.setUserData("column", col);
return col;
}
}
}
}
}
}
return null;
}
private ColumnKind kindForType(String type) {
switch (type) {
case "null": return ColumnKind.Null;
case "dateTime": return ColumnKind.DateTime;
case "boolean": return ColumnKind.Boolean;
case "integer": return ColumnKind.Integer;
case "decimal": return ColumnKind.Decimal;
case "string": return ColumnKind.String;
case "canonical": return ColumnKind.String;
case "url": return ColumnKind.String;
case "uri": return ColumnKind.String;
case "oid": return ColumnKind.String;
case "uuid": return ColumnKind.String;
case "id": return ColumnKind.String;
case "code": return ColumnKind.String;
case "base64Binary": return ColumnKind.Binary;
case "time": return ColumnKind.Time;
default: return ColumnKind.Complex;
}
}
private boolean isSimpleType(String type) {
return Utilities.existsInList(type, "dateTime", "boolean", "integer", "decimal", "string", "base64Binary", "id", "code", "date", "time", "canonical");
}
private String simpleType(String type) {
type = type.replace("http://hl7.org/fhirpath/System.", "").replace("http://hl7.org/fhir/StructureDefinition/", "");
if (Utilities.existsInList(type, "date", "dateTime", "instant")) {
return "dateTime";
}
if (Utilities.existsInList(type, "Boolean", "boolean")) {
return "boolean";
}
if (Utilities.existsInList(type, "Integer", "integer", "integer64")) {
return "integer";
}
if (Utilities.existsInList(type, "Decimal", "decimal")) {
return "decimal";
}
if (Utilities.existsInList(type, "String", "string", "code")) {
return "string";
}
if (Utilities.existsInList(type, "Time", "time")) {
return "time";
}
if (Utilities.existsInList(type, "base64Binary")) {
return "base64Binary";
}
return type;
}
private TypeDetails checkForEach(JsonObject vd, String path, JsonObject focus, JsonElement expression, TypeDetails t) {
if (!(expression instanceof JsonString)) {
error(path+".forEach", expression, "forEach is not a string", IssueType.INVALID);
return null;
} else {
String expr = expression.asString();
List<IssueMessage> warnings = new ArrayList<>();
TypeDetails td = null;
try {
ExpressionNode n = fpe.parse(expr);
focus.setUserData("forEach", n);
td = fpe.checkOnTypes(vd, resourceName, t, n, warnings);
} catch (Exception e) {
error(path, expression, e.getMessage(), IssueType.INVALID);
}
if (td != null) {
for (IssueMessage s : warnings) {
warning(path+".forEach", expression, s.getMessage());
}
}
return td;
}
}
private TypeDetails checkForEachOrNull(JsonObject vd, String path, JsonObject focus, JsonElement expression, TypeDetails t) {
if (!(expression instanceof JsonString)) {
error(path+".forEachOrNull", expression, "forEachOrNull is not a string", IssueType.INVALID);
return null;
} else {
String expr = expression.asString();
List<IssueMessage> warnings = new ArrayList<>();
TypeDetails td = null;
try {
ExpressionNode n = fpe.parse(expr);
focus.setUserData("forEachOrNull", n);
td = fpe.checkOnTypes(vd, resourceName, t, n, warnings);
} catch (Exception e) {
error(path, expression, e.getMessage(), IssueType.INVALID);
}
if (td != null) {
for (IssueMessage s : warnings) {
warning(path+".forEachOrNull", expression, s.getMessage());
}
}
return td;
}
}
private void checkConstant(String path, JsonObject constant) {
checkProperties(constant, path, "name", "valueBase64Binary", "valueBoolean", "valueCanonical", "valueCode", "valueDate", "valueDateTime", "valueDecimal", "valueId", "valueInstant", "valueInteger", "valueInteger64", "valueOid", "valueString", "valuePositiveInt", "valueTime", "valueUnsignedInt", "valueUri", "valueUrl", "valueUuid");
JsonElement nameJ = constant.get("name");
if (nameJ == null) {
error(path, constant, "No name provided", IssueType.REQUIRED);
} else if (!(nameJ instanceof JsonString)) {
error(path, constant, "Name must be a string", IssueType.INVALID);
} else {
String name = constant.asString("name");
if (!isValidName(name)) {
error(path+".name", nameJ, "The name '"+name+"' is not valid", IssueType.INVARIANT);
}
}
if (constant.has("valueBase64Binary")) {
checkIsString(path, constant, "valueBase64Binary", new Base64BinaryType());
} else if (constant.has("valueBoolean")) {
checkIsBoolean(path, constant, "valueBoolean", new BooleanType());
} else if (constant.has("valueCanonical")) {
checkIsString(path, constant, "valueCanonical", new CanonicalType());
} else if (constant.has("valueCode")) {
checkIsString(path, constant, "valueCode", new CodeType());
} else if (constant.has("valueDate")) {
checkIsString(path, constant, "valueDate", new DateType());
} else if (constant.has("valueDateTime")) {
checkIsString(path, constant, "valueDateTime", new DateTimeType());
} else if (constant.has("valueDecimal")) {
checkIsNumber(path, constant, "valueDecimal", new DecimalType());
} else if (constant.has("valueId")) {
checkIsString(path, constant, "valueId", new IdType());
} else if (constant.has("valueInstant")) {
checkIsString(path, constant, "valueInstant", new InstantType());
} else if (constant.has("valueInteger")) {
checkIsNumber(path, constant, "valueInteger", new IntegerType());
} else if (constant.has("valueOid")) {
checkIsString(path, constant, "valueOid", new OidType());
} else if (constant.has("valueString")) {
checkIsString(path, constant, "valueString", new StringType());
} else if (constant.has("valuePositiveInt")) {
checkIsNumber(path, constant, "valuePositiveInt", new PositiveIntType());
} else if (constant.has("valueTime")) {
checkIsString(path, constant, "valueTime", new TimeType());
} else if (constant.has("valueUnsignedInt")) {
checkIsNumber(path, constant, "valueUnsignedInt", new UnsignedIntType());
} else if (constant.has("valueUri")) {
checkIsString(path, constant, "valueUri", new UriType());
} else if (constant.has("valueUrl")) {
checkIsString(path, constant, "valueUrl", new UrlType());
} else if (constant.has("valueUuid")) {
checkIsString(path, constant, "valueUuid", new UuidType());
} else {
error(path, constant, "No value found", IssueType.REQUIRED);
}
}
private void checkIsString(String path, JsonObject constant, String name, PrimitiveType<?> value) {
JsonElement j = constant.get(name);
if (!(j instanceof JsonString)) {
error(path+"."+name, j, name+" must be a string", IssueType.INVALID);
} else {
value.setValueAsString(j.asString());
constant.setUserData("value", value);
}
}
private void checkIsBoolean(String path, JsonObject constant, String name, PrimitiveType<?> value) {
JsonElement j = constant.get(name);
if (!(j instanceof JsonBoolean)) {
error(path+"."+name, j, name+" must be a boolean", IssueType.INVALID);
} else {
value.setValueAsString(j.asString());
constant.setUserData("value", value);
}
}
private void checkIsNumber(String path, JsonObject constant, String name, PrimitiveType<?> value) {
JsonElement j = constant.get(name);
if (!(j instanceof JsonNumber)) {
error(path+"."+name, j, name+" must be a number", IssueType.INVALID);
} else {
value.setValueAsString(j.asString());
constant.setUserData("value", value);
}
}
private void checkWhere(JsonObject vd, String path, JsonObject where) {
checkProperties(where, path, "path", "description");
String expr = where.asString("path");
if (expr == null) {
error(path, where, "No path provided", IssueType.REQUIRED);
}
List<String> types = new ArrayList<>();
List<IssueMessage> warnings = new ArrayList<>();
types.add(resourceName);
TypeDetails td = null;
try {
ExpressionNode n = fpe.parse(expr);
where.setUserData("path", n);
td = fpe.checkOnTypes(vd, resourceName, types, n, warnings);
} catch (Exception e) {
error(path, where.get("path"), e.getMessage(), IssueType.INVALID);
}
if (td != null) {
if (td.getCollectionStatus() != CollectionStatus.SINGLETON || td.getTypes().size() != 1 || !td.hasType("boolean")) {
error(path+".path", where.get("path"), "A where path must return a boolean, but the expression "+expr+" returns a "+td.describe(), IssueType.BUSINESSRULE);
} else {
for (IssueMessage s : warnings) {
warning(path+".path", where.get("path"), s.getMessage());
}
}
}
}
private void checkProperties(JsonObject obj, String path, String... names) {
for (JsonProperty p : obj.getProperties()) {
boolean nameOk = "extension".equals(p.getName());
for (String name : names) {
nameOk = nameOk || name.equals(p.getName());
}
if (!nameOk) {
error(path+"."+p.getName(), p.getValue(), "Unknown JSON property "+p.getName(), IssueType.UNKNOWN);
}
}
}
private boolean isValidName(String name) {
boolean first = true;
for (char c : name.toCharArray()) {
if (!(Character.isAlphabetic(c) || Character.isDigit(c) || (!first && c == '_'))) {
return false;
}
first = false;
}
return true;
}
private boolean checkAllObjects(String path, JsonObject focus, String name) {
if (!focus.has(name)) {
return true;
} else if (!(focus.get(name) instanceof JsonArray)) {
error(path+"."+name, focus.get(name), name+" must be an array", IssueType.INVALID);
return false;
} else {
JsonArray arr = focus.getJsonArray(name);
int i = 0;
boolean ok = true;
for (JsonElement e : arr) {
if (!(e instanceof JsonObject)) {
error(path+"."+name+"["+i+"]", e, name+"["+i+"] must be an object", IssueType.INVALID);
ok = false;
}
}
return ok;
}
}
private void error(String path, JsonElement e, String issue, IssueType type) {
ValidationMessage vm = new ValidationMessage(Source.InstanceValidator, type, e.getStart().getLine(), e.getStart().getCol(), path, issue, IssueSeverity.ERROR);
issues.add(vm);
}
private void warning(String path, JsonElement e, String issue) {
ValidationMessage vm = new ValidationMessage(Source.InstanceValidator, IssueType.BUSINESSRULE, e.getStart().getLine(), e.getStart().getCol(), path, issue, IssueSeverity.WARNING);
issues.add(vm);
}
private void hint(String path, JsonElement e, String issue) {
ValidationMessage vm = new ValidationMessage(Source.InstanceValidator, IssueType.BUSINESSRULE, e.getStart().getLine(), e.getStart().getCol(), path, issue, IssueSeverity.INFORMATION);
issues.add(vm);
}
public void dump() {
for (ValidationMessage vm : issues) {
System.out.println(vm.summary());
}
}
public void check() {
if (!isOk()) {
throw new FHIRException("View Definition is not valid");
}
}
public String getName() {
return name;
}
public List<ValidationMessage> getIssues() {
return issues;
}
public boolean isOk() {
boolean ok = true;
for (ValidationMessage vm : issues) {
if (vm.isError()) {
ok = false;
}
}
return ok;
}
}

130
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/utils/sql/Value.java Normal file
View File

@ -0,0 +1,130 @@
package org.hl7.fhir.r4.utils.sql;
import java.math.BigDecimal;
import java.util.Date;
import org.hl7.fhir.r4.model.Base;
import org.hl7.fhir.r4.utils.sql.Value;
/**
* String value is always provided, and a more specific value may also be provided
*/
public class Value {
private String valueString;
private Boolean valueBoolean;
private Date valueDate;
private Integer valueInt;
private BigDecimal valueDecimal;
private byte[] valueBinary;
private Base valueComplex;
private Value() {
super();
}
public static Value makeString(String s) {
Value v = new Value();
v.valueString = s;
return v;
}
public static Value makeBoolean(String s, Boolean b) {
Value v = new Value();
v.valueString = s;
v.valueBoolean = b;
return v;
}
public static Value makeDate(String s, Date d) {
Value v = new Value();
v.valueString = s;
v.valueDate = d;
return v;
}
public static Value makeInteger(String s, Integer i) {
Value v = new Value();
v.valueString = s;
v.valueInt = i;
return v;
}
public static Value makeDecimal(String s, BigDecimal bigDecimal) {
Value v = new Value();
v.valueString = s;
v.valueDecimal = bigDecimal;
return v;
}
public static Value makeBinary(String s, byte[] b) {
Value v = new Value();
v.valueString = s;
v.valueBinary = b;
return v;
}
public static Value makeComplex(Base b) {
Value v = new Value();
v.valueComplex = b;
return v;
}
public String getValueString() {
return valueString;
}
public Date getValueDate() {
return valueDate;
}
public Integer getValueInt() {
return valueInt;
}
public BigDecimal getValueDecimal() {
return valueDecimal;
}
public byte[] getValueBinary() {
return valueBinary;
}
public Boolean getValueBoolean() {
return valueBoolean;
}
public Base getValueComplex() {
return valueComplex;
}
public boolean hasValueString() {
return valueString != null;
}
public boolean hasValueDate() {
return valueDate != null;
}
public boolean hasValueInt() {
return valueInt != null;
}
public boolean hasValueDecimal() {
return valueDecimal != null;
}
public boolean hasValueBinary() {
return valueBinary != null;
}
public boolean hasValueBoolean() {
return valueBoolean != null;
}
public boolean hasValueComplex() {
return valueComplex != null;
}
}

4
org.hl7.fhir.r4/src/test/java/org/hl7/fhir/r4/test/FHIRPathTests.java
View File

@ -117,6 +117,10 @@ public class FHIRPathTests {
return TestingUtilities.context().fetchResource(ValueSet.class, url);
}
@Override
public boolean paramIsType(String name, int index) {
return false;
}
}
private static FHIRPathEngine fp;

9
org.hl7.fhir.r4/src/test/java/org/hl7/fhir/r4/test/SnapShotGenerationTests.java
View File

@ -249,6 +249,11 @@ public class SnapShotGenerationTests {
return null;
}
@Override
public boolean isPrimitiveType(String name) {
StructureDefinition sd = TestingUtilities.context().fetchTypeDefinition(name);
return (sd != null) && (sd.getDerivation() == TypeDerivationRule.SPECIALIZATION) && (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE);
}
}
private static class SnapShotGenerationTestsContext implements IEvaluationContext {
@ -386,6 +391,10 @@ public class SnapShotGenerationTests {
throw new Error("Not implemented yet");
}
@Override
public boolean paramIsType(String name, int index) {
return false;
}
}
private static FHIRPathEngine fp;

16
org.hl7.fhir.r4b/src/main/java/org/hl7/fhir/r4b/fhirpath/FHIRLexer.java
View File

@ -58,26 +58,26 @@ public class FHIRLexer {
private boolean allowDoubleQuotes;
public FHIRLexer(String source, String name) throws FHIRLexerException {
this.source = source == null ? "" : source;
this.source = source == null ? "" : Utilities.stripBOM(source);
this.name = name == null ? "??" : name;
currentLocation = new SourceLocation(1, 1);
next();
}
public FHIRLexer(String source, int i) throws FHIRLexerException {
this.source = source;
this.source = Utilities.stripBOM(source);
this.cursor = i;
currentLocation = new SourceLocation(1, 1);
next();
}
public FHIRLexer(String source, int i, boolean allowDoubleQuotes) throws FHIRLexerException {
this.source = source;
this.source = Utilities.stripBOM(source);
this.cursor = i;
this.allowDoubleQuotes = allowDoubleQuotes;
currentLocation = new SourceLocation(1, 1);
next();
}
public FHIRLexer(String source, String name, boolean metadataFormat, boolean allowDoubleQuotes) throws FHIRLexerException {
this.source = source == null ? "" : source;
this.source = source == null ? "" : Utilities.stripBOM(source);
this.name = name == null ? "??" : name;
this.metadataFormat = metadataFormat;
this.allowDoubleQuotes = allowDoubleQuotes;
@ -187,7 +187,7 @@ public class FHIRLexer {
cursor++;
} else
while (cursor < source.length() && ((source.charAt(cursor) >= 'A' && source.charAt(cursor) <= 'Z') || (source.charAt(cursor) >= 'a' && source.charAt(cursor) <= 'z') ||
(source.charAt(cursor) >= '0' && source.charAt(cursor) <= '9') || source.charAt(cursor) == ':' || source.charAt(cursor) == '-'))
(source.charAt(cursor) >= '0' && source.charAt(cursor) <= '9') || source.charAt(cursor) == ':' || source.charAt(cursor) == '-' || source.charAt(cursor) == '_'))
cursor++;
current = source.substring(currentStart, cursor);
} else if (ch == '/') {
@ -455,7 +455,7 @@ public class FHIRLexer {
i = i + 4;
break;
default:
throw new FHIRLexerException("Unknown character escape \\"+s.charAt(i), currentLocation);
throw new FHIRLexerException("Unknown FHIRPath character escape \\"+s.charAt(i), currentLocation);
}
} else {
b.append(ch);
@ -499,12 +499,12 @@ public class FHIRLexer {
break;
case 'u':
i++;
int uc = Integer.parseInt(s.substring(i, i+4), 16);
int uc = Integer.parseInt(s.substring(i, i+4), 32);
b.append(Character.toString(uc));
i = i + 4;
break;
default:
throw new FHIRLexerException("Unknown character escape \\"+s.charAt(i), currentLocation);
throw new FHIRLexerException("Unknown FHIRPath character escape \\"+s.charAt(i), currentLocation);
}
} else {
b.append(ch);

72
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/conformance/R5ExtensionsLoader.java
View File

@ -174,44 +174,62 @@ public class R5ExtensionsLoader {
for (ElementDefinition ed : sd.getSnapshot().getElement()) {
if (ed.hasBinding() && ed.getBinding().hasValueSet()) {
String vsu = ed.getBinding().getValueSet();
ValueSet vs = context.fetchResource(ValueSet.class, vsu);
if (vs == null) {
loadValueSet(vsu, context, valueSets, codeSystems);
} else if (vs.hasVersion()) {
ed.getBinding().setValueSet(vs.getUrl()+"|"+vs.getVersion());
ValueSet vs = valueSets.containsKey(vsu) ? valueSets.get(vsu).getResource() : null;
if (vs != null) {
vsu = makeR5Url(vsu);
ed.getBinding().setValueSet(vsu);
if (!context.hasResource(ValueSet.class, vsu)) {
vs.setUrl(removeVersion(vsu));
loadValueSet(vs, context, valueSets, codeSystems);
}
}
}
}
}
private void loadValueSet(String url, IWorkerContext context, Map<String, Loadable<ValueSet>> valueSets, Map<String, Loadable<CodeSystem>> codeSystems) throws FHIRFormatError, FileNotFoundException, IOException {
if (valueSets.containsKey(url)) {
ValueSet vs = valueSets.get(url).getResource();
context.cacheResourceFromPackage(vs, vs.getSourcePackage());
for (ConceptSetComponent inc : vs.getCompose().getInclude()) {
for (CanonicalType t : inc.getValueSet()) {
ValueSet vsi = context.fetchResource(ValueSet.class, t.getValue());
if (vsi == null) {
loadValueSet(t.asStringValue(), context, valueSets, codeSystems);
private String removeVersion(String url) {
if (url.contains("|")) {
url = url.substring(0, url.indexOf("|"));
}
return url;
}
private String makeR5Url(String url) {
return url.replace("/fhir/", "/fhir/5.0/");
}
private void loadValueSet(ValueSet vs, IWorkerContext context, Map<String, Loadable<ValueSet>> valueSets, Map<String, Loadable<CodeSystem>> codeSystems) throws FHIRFormatError, FileNotFoundException, IOException {
context.cacheResourceFromPackage(vs, vs.getSourcePackage());
for (ConceptSetComponent inc : vs.getCompose().getInclude()) {
for (CanonicalType t : inc.getValueSet()) {
String vsu = t.getValue();
ValueSet vsi = valueSets.containsKey(vsu) ? valueSets.get(vsu).getResource() : null;
if (vsi != null) {
vsu = makeR5Url(vsu);
t.setValue(vsu);
vsi.setUrl(vsu);
if (!context.hasResource(ValueSet.class, vsu)) {
loadValueSet(vsi, context, valueSets, codeSystems);
}
}
if (inc.hasSystem()) {
if (!inc.hasVersion()) {
if (codeSystems.containsKey(inc.getSystem())) {
CodeSystem cs = codeSystems.get(inc.getSystem()).getResource();
CodeSystem csAlready = context.fetchCodeSystem(inc.getSystem());
if (csAlready == null) {
context.cacheResourceFromPackage(cs, cs.getSourcePackage());
}
}
} else if (context.fetchResource(CodeSystem.class, inc.getSystem(), inc.getVersion()) == null && codeSystems.containsKey(inc.getSystem()+"|"+inc.getVersion())) {
CodeSystem cs1 = codeSystems.get(inc.getSystem()+"|"+inc.getVersion()).getResource();
context.cacheResourceFromPackage(cs1, cs1.getSourcePackage());
}
if (inc.hasSystem()) {
CodeSystem cs;
if (inc.hasVersion()) {
cs = codeSystems.containsKey(inc.getSystem()+"|"+inc.getVersion()) ? codeSystems.get(inc.getSystem()+"|"+inc.getVersion()).getResource() : null;
} else {
cs = codeSystems.containsKey(inc.getSystem()) ? codeSystems.get(inc.getSystem()).getResource() : null;
}
if (cs != null) {
String csu = makeR5Url(inc.getSystem());
cs.setUrl(csu);
inc.setSystem(csu);
if (!context.hasResource(CodeSystem.class, csu)) {
context.cacheResourceFromPackage(cs, cs.getSourcePackage());
}
}
}
}
}
private boolean survivesStrippingTypes(StructureDefinition sd, IWorkerContext context, List<String> typeNames) {

3
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/elementmodel/Element.java
View File

@ -163,7 +163,7 @@ public class Element extends Base implements NamedItem {
private Object nativeObject;
private List<SliceDefinition> sliceDefinitions;
private boolean elided;
public Element(String name) {
super();
this.name = name;
@ -1648,4 +1648,5 @@ public class Element extends Base implements NamedItem {
public boolean isElided() {
return this.elided;
}
}

5
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/elementmodel/JsonParser.java
View File

@ -470,7 +470,6 @@ public class JsonParser extends ParserBase {
n.getChildren().add(nKey);
nKey.setValue(pv.getName());
boolean ok = true;
Property pvl = propV;
if (propV.isJsonPrimitiveChoice()) {
@ -483,6 +482,7 @@ public class JsonParser extends ParserBase {
ok = true;
} else if (propV.getDefinition().getType().size() == 1 && propV.typeIsConsistent(type)) {
pvl = new Property(propV.getContext(), propV.getDefinition(), propV.getStructure(), propV.getUtils(), propV.getContextUtils(), propV.getType());
ok = true;
} else {
logError(errors, ValidationMessage.NO_RULE_DATE, line(pv.getValue()), col(pv.getValue()), path, IssueType.STRUCTURE, this.context.formatMessage(I18nConstants.UNRECOGNISED_PROPERTY_TYPE_WRONG, describeType(pv.getValue()), propV.getName(), type, propV.typeSummary()), IssueSeverity.ERROR);
}
@ -573,7 +573,8 @@ public class JsonParser extends ParserBase {
n.setNull(true);
// nothing to do, it's ok, but we treat it like it doesn't exist
} else {
logError(errors, ValidationMessage.NO_RULE_DATE, line(e), col(e), npath, IssueType.INVALID, context.formatMessage(I18nConstants.THIS_PROPERTY_MUST_BE__NOT_, (property.isList() ? "an Array" : "an Object"), describe(e), name, npath), IssueSeverity.ERROR);
String msg = context.formatMessage(I18nConstants.THIS_PROPERTY_MUST_BE__NOT_, (property.isList() ? "an Array" : "an Object"), describe(e), name, npath);
logError(errors, ValidationMessage.NO_RULE_DATE, line(e), col(e), npath, IssueType.INVALID, msg, IssueSeverity.ERROR);
}
return null;
}

2
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/elementmodel/Property.java
View File

@ -445,7 +445,7 @@ public class Property {
}
sd = context.fetchResource(StructureDefinition.class, url);
if (sd == null)
throw new DefinitionException("Unable to find type '"+t+"' for name '"+elementName+"' on property "+definition.getPath());
throw new DefinitionException("Unable to find definition '"+url+"' for type '"+t+"' for name '"+elementName+"' on property "+definition.getPath());
children = profileUtilities.getChildMap(sd, sd.getSnapshot().getElement().get(0));
}
}

46
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/fhirpath/FHIRLexer.java
View File

@ -16,22 +16,14 @@ public class FHIRLexer {
public class FHIRLexerException extends FHIRException {
private SourceLocation location;
// public FHIRLexerException() {
// super();
// }
//
// public FHIRLexerException(String message, Throwable cause) {
// super(message, cause);
// }
//
// public FHIRLexerException(String message) {
// super(message);
// }
//
// public FHIRLexerException(Throwable cause) {
// super(cause);
// }
public FHIRLexerException(String message) {
super(message);
}
public FHIRLexerException(String message, Throwable cause) {
super(message, cause);
}
public FHIRLexerException(String message, SourceLocation location) {
super(message);
@ -43,6 +35,7 @@ public class FHIRLexer {
}
}
private String source;
private int cursor;
private int currentStart;
@ -63,6 +56,7 @@ public class FHIRLexer {
currentLocation = new SourceLocation(1, 1);
next();
}
public FHIRLexer(String source, int i) throws FHIRLexerException {
this.source = Utilities.stripBOM(source);
this.cursor = i;
@ -87,6 +81,7 @@ public class FHIRLexer {
public String getCurrent() {
return current;
}
public SourceLocation getCurrentLocation() {
return currentLocation;
}
@ -337,29 +332,38 @@ public class FHIRLexer {
return ch == '-' || ch == ':' || ch == 'T' || ch == '+' || ch == 'Z' || Character.isDigit(ch) || (cursor-start == eot && ch == '.' && cursor < source.length()-1&& Character.isDigit(source.charAt(cursor+1)));
}
public boolean isOp() {
return ExpressionNode.Operation.fromCode(current) != null;
}
public boolean done() {
return currentStart >= source.length();
}
public int nextId() {
id++;
return id;
}
public SourceLocation getCurrentStartLocation() {
return currentStartLocation;
}
// special case use
public void setCurrent(String current) {
this.current = current;
}
public boolean hasComment() {
return !done() && current.startsWith("//");
}
public boolean hasComments() {
return comments.size() > 0;
}
public List<String> getComments() {
return comments;
}
@ -519,6 +523,7 @@ public class FHIRLexer {
next();
}
public String takeDottedToken() throws FHIRLexerException {
StringBuilder b = new StringBuilder();
b.append(take());
@ -528,7 +533,12 @@ public class FHIRLexer {
}
return b.toString();
}
public void skipComments() throws FHIRLexerException {
while (!done() && hasComment())
next();
}
public int getCurrentStart() {
return currentStart;
}

11
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/fhirpath/FHIRPathEngine.java
View File

@ -173,7 +173,7 @@ public class FHIRPathEngine {
private StringBuilder log = new StringBuilder();
private Set<String> primitiveTypes = new HashSet<String>();
private Map<String, StructureDefinition> allTypes = new HashMap<String, StructureDefinition>();
private boolean legacyMode; // some R2 and R3 constraints assume that != is valid for emptty sets, so when running for R2/R3, this is set ot true
private boolean legacyMode; // some R2 and R3 constraints assume that != is valid for empty sets, so when running for R2/R3, this is set ot true
private ValidationOptions terminologyServiceOptions = new ValidationOptions(FhirPublication.R5);
private ProfileUtilities profileUtilities;
private String location; // for error messages
@ -332,7 +332,7 @@ public class FHIRPathEngine {
protected void getChildrenByName(Base item, String name, List<Base> result) throws FHIRException {
String tn = null;
if (isAllowPolymorphicNames()) {
// we'll look to see whether we hav a polymorphic name
// we'll look to see whether we have a polymorphic name
for (Property p : item.children()) {
if (p.getName().endsWith("[x]")) {
String n = p.getName().substring(0, p.getName().length()-3);
@ -1561,7 +1561,7 @@ public class FHIRPathEngine {
work.addAll(work2);
break;
case Constant:
work.addAll(resolveConstant(context, exp.getConstant(), false, exp));
work.addAll(resolveConstant(context, exp.getConstant(), false, exp, true));
break;
case Group:
work2 = execute(context, focus, exp.getGroup(), atEntry);
@ -1719,8 +1719,7 @@ public class FHIRPathEngine {
}
}
}
private List<Base> resolveConstant(ExecutionContext context, Base constant, boolean beforeContext, ExpressionNode expr) throws PathEngineException {
private List<Base> resolveConstant(ExecutionContext context, Base constant, boolean beforeContext, ExpressionNode expr, boolean explicitConstant) throws PathEngineException {
if (constant == null) {
return new ArrayList<Base>();
}
@ -1733,7 +1732,7 @@ public class FHIRPathEngine {
if (context.hasDefinedVariable(varName)) {
return context.getDefinedVariable(varName);
}
return resolveConstant(context, c.getValue(), beforeContext, expr, true);
return resolveConstant(context, c.getValue(), beforeContext, expr, explicitConstant);
} else if (c.getValue().startsWith("@")) {
return new ArrayList<Base>(Arrays.asList(processDateConstant(context.appInfo, c.getValue().substring(1), expr)));
} else {

4
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/renderers/DataRenderer.java
View File

@ -2236,7 +2236,7 @@ public class DataRenderer extends Renderer implements CodeResolver {
return b.toString();
}
protected String versionFromCanonical(String system) {
protected String systemFromCanonical(String system) {
if (system == null) {
return null;
} else if (system.contains("|")) {
@ -2246,7 +2246,7 @@ public class DataRenderer extends Renderer implements CodeResolver {
}
}
protected String systemFromCanonical(String system) {
protected String versionFromCanonical(String system) {
if (system == null) {
return null;
} else if (system.contains("|")) {

6
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/renderers/ListRenderer.java
View File

@ -100,6 +100,12 @@ public class ListRenderer extends ResourceRenderer {
tr.td().tx(e.has("deleted") ? e.primitiveValue("deleted") : "");
}
}
if (list.has("contained") && context.isTechnicalMode()) {
x.hr();
x.para().b().tx(context.formatMessagePlural(list.children("contained").size(), RenderingContext.PAT_CONTAINED));
addContained(status, x, list.children("contained"));
}
}
public void describe(XhtmlNode x, ListResource list) {

13
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/renderers/PatientRenderer.java
View File

@ -232,19 +232,6 @@ public class PatientRenderer extends ResourceRenderer {
return false;
}
private void addContained(RenderingStatus status, XhtmlNode x, List<ResourceWrapper> list) throws FHIRFormatError, DefinitionException, FHIRException, IOException, EOperationOutcome {
for (ResourceWrapper c : list) {
x.hr();
String id = c.getScopedId();
if (!context.hasAnchor(id)) {
context.addAnchor(id);
x.an(context.prefixAnchor(id));
}
RendererFactory.factory(c, context.forContained()).buildNarrative(status, x, c);
}
}
private void addExtensions(RenderingStatus status, XhtmlNode tbl, ResourceWrapper r) throws UnsupportedEncodingException, FHIRException, IOException {
Map<String, List<ResourceWrapper>> extensions = new HashMap<>();
List<ResourceWrapper> pw = r.children("extension");

13
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/renderers/ResourceRenderer.java
View File

@ -26,6 +26,7 @@ import org.hl7.fhir.r5.model.Reference;
import org.hl7.fhir.r5.model.Resource;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.hl7.fhir.r5.model.UriType;
import org.hl7.fhir.r5.renderers.Renderer.RenderingStatus;
import org.hl7.fhir.r5.renderers.utils.RenderingContext;
import org.hl7.fhir.r5.renderers.utils.Resolver.ResourceReferenceKind;
import org.hl7.fhir.r5.renderers.utils.Resolver.ResourceWithReference;
@ -1447,4 +1448,16 @@ public abstract class ResourceRenderer extends DataRenderer {
}
}
}
protected void addContained(RenderingStatus status, XhtmlNode x, List<ResourceWrapper> list) throws FHIRFormatError, DefinitionException, FHIRException, IOException, EOperationOutcome {
for (ResourceWrapper c : list) {
x.hr();
String id = c.getScopedId();
if (!context.hasAnchor(id)) {
context.addAnchor(id);
x.an(context.prefixAnchor(id));
}
RendererFactory.factory(c, context.forContained()).buildNarrative(status, x, c);
}
}
}

39
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/renderers/StructureDefinitionRenderer.java
View File

@ -2075,8 +2075,13 @@ public class StructureDefinitionRenderer extends ResourceRenderer {
if (u.contains("|") || hasMultipleVersions(context.getWorker().fetchResourcesByUrl(StructureDefinition.class, u))) {
v = "("+sd.getVersion()+")";
}
String disp = sd.present()+v;
String ref = context.getPkp().getLinkForProfile(null, sd.getUrl());
String disp = sd.present()+v;
String ref;
if (u.contains("|")) {
ref = sd.getWebPath();
} else {
ref = context.getPkp().getLinkForProfile(null, sd.getUrl());
}
if (ref != null && ref.contains("|"))
ref = ref.substring(0, ref.indexOf("|"));
c.addPiece(checkForNoChange(t, gen.new Piece(ref, disp, null)));
@ -2762,10 +2767,20 @@ public class StructureDefinitionRenderer extends ResourceRenderer {
boolean used = false;
Row choicerow = gen.new Row();
choicerow.setId(element.getPath());
String t = tr.getWorkingCode();
if (isReference(t)) {
String ts = tr.getWorkingCode();
String tu = tr.getWorkingCode();
if (Utilities.isAbsoluteUrl(ts)) {
StructureDefinition sd = context.getContext().fetchResource(StructureDefinition.class, ts);
if (sd != null) {
ts = sd.getType();
}
}
if (Utilities.isAbsoluteUrl(ts)) {
ts = utail(ts);
}
if (isReference(tu)) {
used = true;
choicerow.getCells().add(gen.new Cell(null, null, tail(element.getPath()).replace("[x]", Utilities.capitalize(t)), null, null));
choicerow.getCells().add(gen.new Cell(null, null, tail(element.getPath()).replace("[x]", Utilities.capitalize(ts)), null, null));
choicerow.getCells().add(gen.new Cell());
choicerow.getCells().add(gen.new Cell(null, null, "", null, null));
choicerow.setIcon("icon_reference.png", context.formatPhrase(RenderingContext.TEXT_ICON_REFERENCE));
@ -2804,19 +2819,19 @@ public class StructureDefinitionRenderer extends ResourceRenderer {
}
} else {
StructureDefinition sd = context.getWorker().fetchTypeDefinition(t);
StructureDefinition sd = context.getWorker().fetchTypeDefinition(tu);
if (sd == null) {
if (DEBUG) {
System.out.println("Unable to find "+t);
System.out.println("Unable to find "+tu);
}
sd = context.getWorker().fetchTypeDefinition(t);
sd = context.getWorker().fetchTypeDefinition(tu);
} else if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE) {
used = true;
choicerow.getCells().add(gen.new Cell(null, null, tail(element.getPath()).replace("[x]", Utilities.capitalize(t)), sd.getDescription(), null));
choicerow.getCells().add(gen.new Cell(null, null, tail(element.getPath()).replace("[x]", Utilities.capitalize(ts)), sd.getDescription(), null));
choicerow.getCells().add(gen.new Cell());
choicerow.getCells().add(gen.new Cell(null, null, "", null, null));
choicerow.setIcon("icon_primitive.png", context.formatPhrase(RenderingContext.TEXT_ICON_PRIMITIVE));
Cell c = gen.new Cell(null, corePath+"datatypes.html#"+t, sd.getTypeName(), null, null);
Cell c = gen.new Cell(null, corePath+"datatypes.html#"+tu, sd.getTypeName(), null, null);
choicerow.getCells().add(c);
if (!mustSupportMode && isMustSupport(tr) && element.getMustSupport()) {
c.addPiece(gen.new Piece(null, " ", null));
@ -2824,11 +2839,11 @@ public class StructureDefinitionRenderer extends ResourceRenderer {
}
} else {
used = true;
choicerow.getCells().add(gen.new Cell(null, null, tail(element.getPath()).replace("[x]", Utilities.capitalize(t)), sd.getDescription(), null));
choicerow.getCells().add(gen.new Cell(null, null, tail(element.getPath()).replace("[x]", Utilities.capitalize(ts)), sd.getDescription(), null));
choicerow.getCells().add(gen.new Cell());
choicerow.getCells().add(gen.new Cell(null, null, "", null, null));
choicerow.setIcon("icon_datatype.gif", context.formatPhrase(RenderingContext.TEXT_ICON_DATATYPE));
Cell c = gen.new Cell(null, context.getPkp().getLinkFor(corePath, t), sd.getTypeName(), null, null);
Cell c = gen.new Cell(null, context.getPkp().getLinkFor(corePath, tu), sd.getTypeName(), null, null);
choicerow.getCells().add(c);
if (!mustSupportMode && isMustSupport(tr) && element.getMustSupport()) {
c.addPiece(gen.new Piece(null, " ", null));

155
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/utils/sql/Runner.java
View File

@ -27,15 +27,53 @@ import org.hl7.fhir.utilities.json.model.JsonObject;
import org.hl7.fhir.utilities.validation.ValidationMessage;
/**
* How to use the Runner:
*
* create a resource, and fill out:
* the context (supports the FHIRPathEngine)
* a store that handles the output
* a tracker - if you want
*
* Once it's created, you either run it as a batch, or in trickle mode
*
* (1) Batch Mode
*
* * provide a provider
* * call execute() with a ViewDefinition
* * wait... (watch with an observer if you want to track progress)
*
* (2) Trickle Mode
* * call 'prepare', and keep the WorkContext that's returned
* * each time there's a resource to process, call processResource and pass in the workContext and the resource
* * when done, call finish(WorkContext)
*/
public class Runner implements IEvaluationContext {
public interface IRunnerObserver {
public void handleRow(Base resource, int total, int cursor);
}
public class WorkContext {
private JsonObject vd;
private Store store;
protected WorkContext(JsonObject vd) {
super();
this.vd = vd;
}
}
private IWorkerContext context;
private Provider provider;
private Storage storage;
private IRunnerObserver observer;
private List<String> prohibitedNames = new ArrayList<String>();
private FHIRPathEngine fpe;
private String resourceName;
private List<ValidationMessage> issues;
private int resCount;
public IWorkerContext getContext() {
@ -45,7 +83,6 @@ public class Runner implements IEvaluationContext {
this.context = context;
}
public Provider getProvider() {
return provider;
}
@ -69,6 +106,29 @@ public class Runner implements IEvaluationContext {
}
public void execute(String path, JsonObject viewDefinition) {
WorkContext wc = prepare(path, viewDefinition);
try {
evaluate(wc);
} finally {
finish(wc);
}
}
private void evaluate(WorkContext wc) {
List<Base> data = provider.fetch(resourceName);
int i = 0;
for (Base b : data) {
if (observer != null) {
observer.handleRow(b, data.size(), i);
}
processResource(wc.vd, wc.store, b);
i++;
}
}
public WorkContext prepare(String path, JsonObject viewDefinition) {
WorkContext wc = new WorkContext(viewDefinition);
if (context == null) {
throw new FHIRException("No context provided");
}
@ -90,47 +150,54 @@ public class Runner implements IEvaluationContext {
validator.dump();
validator.check();
resourceName = validator.getResourceName();
evaluate(viewDefinition);
}
private void evaluate(JsonObject vd) {
Store store = storage.createStore(vd.asString("name"), (List<Column>) vd.getUserData("columns"));
List<Base> data = provider.fetch(resourceName);
for (Base b : data) {
boolean ok = true;
for (JsonObject w : vd.getJsonObjects("where")) {
String expr = w.asString("path");
ExpressionNode node = fpe.parse(expr);
boolean pass = fpe.evaluateToBoolean(vd, b, b, b, node);
if (!pass) {
ok = false;
break;
}
}
if (ok) {
List<List<Cell>> rows = new ArrayList<>();
rows.add(new ArrayList<Cell>());
for (JsonObject select : vd.getJsonObjects("select")) {
executeSelect(vd, select, b, rows);
}
for (List<Cell> row : rows) {
storage.addRow(store, row);
}
}
}
storage.finish(store);
wc.store = storage.createStore(wc.vd.asString("name"), (List<Column>) wc.vd.getUserData("columns"));
return wc;
}
public void processResource(WorkContext wc, Base b) {
if (observer != null) {
observer.handleRow(b, -1, resCount);
}
processResource(wc.vd, wc.store, b);
resCount++;
wc.store.flush();
}
private void processResource(JsonObject vd, Store store, Base b) {
boolean ok = true;
for (JsonObject w : vd.getJsonObjects("where")) {
String expr = w.asString("path");
ExpressionNode node = fpe.parse(expr);
boolean pass = fpe.evaluateToBoolean(vd, b, b, b, node);
if (!pass) {
ok = false;
break;
}
}
if (ok) {
List<List<Cell>> rows = new ArrayList<>();
rows.add(new ArrayList<Cell>());
for (JsonObject select : vd.getJsonObjects("select")) {
executeSelect(vd, select, b, rows);
}
for (List<Cell> row : rows) {
storage.addRow(store, row);
}
}
}
public void finish(WorkContext wc) {
storage.finish(wc.store);
}
private void executeSelect(JsonObject vd, JsonObject select, Base b, List<List<Cell>> rows) {
List<Base> focus = new ArrayList<>();
if (select.has("forEach")) {
focus.addAll(executeForEach(vd, select, b));
} else if (select.has("forEachOrNull")) {
focus.addAll(executeForEachOrNull(vd, select, b));
if (focus.isEmpty()) {
List<Column> columns = (List<Column>) select.getUserData("columns");
@ -148,8 +215,8 @@ public class Runner implements IEvaluationContext {
focus.add(b);
}
// } else if (select.has("unionAll")) {
// focus.addAll(executeUnion(select, b));
// } else if (select.has("unionAll")) {
// focus.addAll(executeUnion(select, b));
List<List<Cell>> tempRows = new ArrayList<>();
tempRows.addAll(rows);
@ -165,9 +232,9 @@ public class Runner implements IEvaluationContext {
for (JsonObject sub : select.getJsonObjects("select")) {
executeSelect(vd, sub, f, rowsToAdd);
}
executeUnionAll(vd, select.getJsonObjects("unionAll"), f, rowsToAdd);
rows.addAll(rowsToAdd);
}
}
@ -195,7 +262,7 @@ public class Runner implements IEvaluationContext {
}
return list;
}
private List<Cell> cloneRow(List<Cell> cells) {
List<Cell> list = new ArrayList<>();
for (Cell cell : cells) {
@ -323,7 +390,7 @@ public class Runner implements IEvaluationContext {
throw new FHIRException("Attempt to add a type "+b.fhirType()+" to an unknown column type for column "+column.getName());
}
}
private Column column(String columnName, List<Column> columns) {
for (Column t : columns) {
if (t.getName().equalsIgnoreCase(columnName)) {
@ -341,7 +408,7 @@ public class Runner implements IEvaluationContext {
}
return null;
}
@Override
public List<Base> resolveConstant(FHIRPathEngine engine, Object appContext, String name, boolean beforeContext, boolean explicitConstant) throws PathEngineException {
List<Base> list = new ArrayList<Base>();
@ -428,7 +495,7 @@ public class Runner implements IEvaluationContext {
}
return base;
}
private List<Base> executeReferenceKey(Base rootResource, List<Base> focus, List<List<Base>> parameters) {
String rt = null;
if (parameters.size() > 0) {
@ -473,7 +540,7 @@ public class Runner implements IEvaluationContext {
}
return null;
}
@Override
public Base resolveReference(FHIRPathEngine engine, Object appContext, String url, Base refContext) throws FHIRException {
throw new Error("Not implemented yet: resolveReference");

3
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/utils/sql/Store.java
View File

@ -13,4 +13,7 @@ public class Store {
return name;
}
public void flush() {
}
}

234
org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/profiles/AuthorizationIdentifier.java Normal file
View File

@ -0,0 +1,234 @@
package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public class AuthorizationIdentifier extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-authorization-identifier|3.2.0";
@Min("0") @Max("*") @Doco("Additional content defined by implementations")
@Definition("May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.")
private List<Extension> extensions = new ArrayList<>(); // Additional content defined by implementations
@Min("1") @Max("1") @Doco("The namespace for the identifier value")
@Definition("Establishes the namespace for the value - that is, a URL that describes a set values that are unique.")
private String system;// @NotNull // The namespace for the identifier value
@Min("1") @Max("1") @Doco("The value that is unique")
@Definition("The portion of the identifier typically relevant to the user and which is unique within the context of the system.")
private String value;// @NotNull // The value that is unique
@Min("0") @Max("1") @Doco("Time period when id is/was valid for use")
@Definition("Time period during which identifier is/was valid for use.")
private Period period; // Time period when id is/was valid for use
@Min("0") @Max("1") @Doco("Organization that issued id (may be just text)")
@Definition("Organization that issued/manages the identifier.")
private Reference assigner; // Organization that issued id (may be just text)
/**
* Parameter-less constructor.
*
*/
public AuthorizationIdentifier() {
initFixedValues();
}
/**
* Used when loading other models
*
*/
public static AuthorizationIdentifier fromSource(PEInstance source) {
AuthorizationIdentifier theThing = new AuthorizationIdentifier();
theThing.workerContext = source.getContext();
theThing.load(source);
return theThing;
}
public void load(PEInstance src) {
clear();
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
if (src.hasChild("system")) {
system = ((UriType) src.child("system").asDataType()).getValue();
}
if (src.hasChild("value")) {
value = ((StringType) src.child("value").asDataType()).getValue();
}
if (src.hasChild("period")) {
period = (Period) src.child("period").asDataType();
}
if (src.hasChild("assigner")) {
assigner = (Reference) src.child("assigner").asDataType();
}
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("system");
if (system != null) {
tgt.makeChild("system").data().setProperty("value", new UriType(system));
}
tgt.clear("value");
if (value != null) {
tgt.makeChild("value").data().setProperty("value", new StringType(value));
}
tgt.clear("period");
if (period != null) {
tgt.addChild("period", period);
}
tgt.clear("assigner");
if (assigner != null) {
tgt.addChild("assigner", assigner);
}
}
private void initFixedValues() {
system = "https://autregweb.sst.dk";
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getSystem() {
return system;
}
public boolean hasSystem() {
return true;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getValue() {
return value;
}
public AuthorizationIdentifier setValue(String value) {
this.value = value;
return this;
}
public boolean hasValue() {
return value != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Period getPeriod() {
if (period == null) { period = new Period(); }
return period;
}
public AuthorizationIdentifier setPeriod(Period value) {
this.period = value;
return this;
}
public boolean hasPeriod() {
return period != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Reference getAssigner() {
if (assigner == null) { assigner = new Reference(); }
return assigner;
}
public AuthorizationIdentifier setAssigner(Reference value) {
this.assigner = value;
return this;
}
public boolean hasAssigner() {
return assigner != null;
}
public void clear() {
extensions.clear();
system = null;
value = null;
period = null;
assigner = null;
}
}

234
org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/profiles/CVRIdentifier.java Normal file
View File

@ -0,0 +1,234 @@
package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public class CVRIdentifier extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-cvr-identifier|3.2.0";
@Min("0") @Max("*") @Doco("Additional content defined by implementations")
@Definition("May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.")
private List<Extension> extensions = new ArrayList<>(); // Additional content defined by implementations
@Min("1") @Max("1") @Doco("The namespace for the identifier value")
@Definition("Establishes the namespace for the value - that is, a URL that describes a set values that are unique.")
private String system;// @NotNull // The namespace for the identifier value
@Min("1") @Max("1") @Doco("The value that is unique")
@Definition("The portion of the identifier typically relevant to the user and which is unique within the context of the system.")
private String value;// @NotNull // The value that is unique
@Min("0") @Max("1") @Doco("Time period when id is/was valid for use")
@Definition("Time period during which identifier is/was valid for use.")
private Period period; // Time period when id is/was valid for use
@Min("0") @Max("1") @Doco("Organization that issued id (may be just text)")
@Definition("Organization that issued/manages the identifier.")
private Reference assigner; // Organization that issued id (may be just text)
/**
* Parameter-less constructor.
*
*/
public CVRIdentifier() {
initFixedValues();
}
/**
* Used when loading other models
*
*/
public static CVRIdentifier fromSource(PEInstance source) {
CVRIdentifier theThing = new CVRIdentifier();
theThing.workerContext = source.getContext();
theThing.load(source);
return theThing;
}
public void load(PEInstance src) {
clear();
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
if (src.hasChild("system")) {
system = ((UriType) src.child("system").asDataType()).getValue();
}
if (src.hasChild("value")) {
value = ((StringType) src.child("value").asDataType()).getValue();
}
if (src.hasChild("period")) {
period = (Period) src.child("period").asDataType();
}
if (src.hasChild("assigner")) {
assigner = (Reference) src.child("assigner").asDataType();
}
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("system");
if (system != null) {
tgt.makeChild("system").data().setProperty("value", new UriType(system));
}
tgt.clear("value");
if (value != null) {
tgt.makeChild("value").data().setProperty("value", new StringType(value));
}
tgt.clear("period");
if (period != null) {
tgt.addChild("period", period);
}
tgt.clear("assigner");
if (assigner != null) {
tgt.addChild("assigner", assigner);
}
}
private void initFixedValues() {
system = "http://cvr.dk";
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getSystem() {
return system;
}
public boolean hasSystem() {
return true;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getValue() {
return value;
}
public CVRIdentifier setValue(String value) {
this.value = value;
return this;
}
public boolean hasValue() {
return value != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Period getPeriod() {
if (period == null) { period = new Period(); }
return period;
}
public CVRIdentifier setPeriod(Period value) {
this.period = value;
return this;
}
public boolean hasPeriod() {
return period != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Reference getAssigner() {
if (assigner == null) { assigner = new Reference(); }
return assigner;
}
public CVRIdentifier setAssigner(Reference value) {
this.assigner = value;
return this;
}
public boolean hasAssigner() {
return assigner != null;
}
public void clear() {
extensions.clear();
system = null;
value = null;
period = null;
assigner = null;
}
}

71
org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/profiles/ConditionLastAssertedDate.java Normal file
View File

@ -0,0 +1,71 @@
package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* Extension for the last date a Condition-instance was confirmed valid in its
* current state. E.g. with its current clinical- and verification status, stage
* and severity. Typically the last performed follow-up
*
*/
public class ConditionLastAssertedDate extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/ConditionLastAssertedDate|3.2.0";
/**
* Parameter-less constructor.
*
*/
public ConditionLastAssertedDate() {
}
/**
* Used when loading other models
*
*/
public static ConditionLastAssertedDate fromSource(PEInstance source) {
ConditionLastAssertedDate theThing = new ConditionLastAssertedDate();
theThing.workerContext = source.getContext();
theThing.load(source);
return theThing;
}
public void load(PEInstance src) {
clear();
}
public void save(PEInstance tgt, boolean nulls) {
}
public void clear() {
}
}

943
org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/profiles/DkCoreBasicObservation.java Normal file
View File

@ -0,0 +1,943 @@
package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public class DkCoreBasicObservation extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-basic-observation|3.2.0";
@Min("0") @Max("1") @Doco("")
private String id; //
@Min("0") @Max("*") @Doco("Additional content defined by implementations")
@Definition("May be used to represent additional information that is not part of the basic definition of the resource. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.")
private List<Extension> extensions = new ArrayList<>(); // Additional content defined by implementations
@Min("0") @Max("*") @Doco("Extensions that cannot be ignored")
@Definition("May be used to represent additional information that is not part of the basic definition of the resource and that modifies the understanding of the element that contains it and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).")
private List<Extension> modifierExtensions = new ArrayList<>(); // Extensions that cannot be ignored
@Min("0") @Max("*") @Doco("Business Identifier for observation")
@Definition("A unique identifier assigned to this observation.")
private List<Identifier> identifiers = new ArrayList<>(); // Business Identifier for observation
@Min("0") @Max("*") @Doco("Fulfills plan, proposal or order")
@Definition("A plan, proposal or order that is fulfilled in whole or in part by this event. For example, a MedicationRequest may require a patient to have laboratory test performed before it is dispensed.")
private List<Reference> basedOns = new ArrayList<>(); // Fulfills plan, proposal or order
@Min("0") @Max("*") @Doco("Part of referenced event")
@Definition("A larger event of which this particular Observation is a component or step. For example, an observation as part of a procedure.")
private List<Reference> partOfs = new ArrayList<>(); // Part of referenced event
@Min("1") @Max("1") @Doco("registered | preliminary | final | amended +")
@BindingStrength("required") @ValueSet("http://hl7.org/fhir/ValueSet/observation-status|4.0.1")
@Definition("The status of the result value.")
private String status;// @NotNull // registered | preliminary | final | amended +
@Min("1") @Max("1") @Doco("Classification of type of observation")
@BindingStrength("preferred") @ValueSet("http://hl7.org/fhir/ValueSet/observation-category")
@Definition("A code that classifies the general type of observation being made.")
private CodeableConcept category;// @NotNull // Classification of type of observation
@Min("1") @Max("1") @Doco("Type of observation (code / type)")
@BindingStrength("example") @ValueSet("http://hl7.org/fhir/ValueSet/observation-codes")
@Definition("Describes what was observed. Sometimes this is called the observation \"name\".")
private CodeableConcept code;// @NotNull // Type of observation (code / type)
@Min("1") @Max("1") @Doco("Who and/or what the observation is about")
@Definition("The patient, or group of patients, location, or device this observation is about and into whose record the observation is placed. If the actual focus of the observation is different from the subject (or a sample of, part, or region of the subject), the `focus` element or the `code` itself specifies the actual focus of the observation.")
private Reference subject;// @NotNull // Who and/or what the observation is about
@Min("0") @Max("*") @Doco("What the observation is about, when it is not about the subject of record")
@Definition("The actual focus of an observation when it is not the patient of record representing something or someone associated with the patient such as a spouse, parent, fetus, or donor. For example, fetus observations in a mother's record. The focus of an observation could also be an existing condition, an intervention, the subject's diet, another observation of the subject, or a body structure such as tumor or implanted device. An example use case would be using the Observation resource to capture whether the mother is trained to change her child's tracheostomy tube. In this example, the child is the patient of record and the mother is the focus.")
private List<Reference> focus = new ArrayList<>(); // What the observation is about, when it is not about the subject of record
@Min("0") @Max("1") @Doco("Healthcare event during which this observation is made")
@Definition("The healthcare event (e.g. a patient and healthcare provider interaction) during which this observation is made.")
private Reference encounter; // Healthcare event during which this observation is made
@Min("0") @Max("*") @Doco("Who is responsible for the observation")
@Definition("Who was responsible for asserting the observed value as \"true\".")
private List<Reference> performers = new ArrayList<>(); // Who is responsible for the observation
@Min("0") @Max("1") @Doco("Actual result")
@Definition("The information determined as a result of making the observation, if the information has a simple value.")
private Quantity value; // Actual result
@Min("0") @Max("1") @Doco("Why the result is missing")
@BindingStrength("extensible") @ValueSet("http://hl7.org/fhir/ValueSet/data-absent-reason")
@Definition("Provides a reason why the expected value in the element Observation.value[x] is missing.")
private CodeableConcept dataAbsentReason; // Why the result is missing
@Min("0") @Max("*") @Doco("Comments about the observation")
@Definition("Comments about the observation or the results.")
private List<Annotation> notes = new ArrayList<>(); // Comments about the observation
@Min("0") @Max("1") @Doco("How it was done")
@BindingStrength("example") @ValueSet("http://hl7.org/fhir/ValueSet/observation-methods")
@Definition("Indicates the mechanism used to perform the observation.")
private CodeableConcept method; // How it was done
@Min("0") @Max("1") @Doco("Specimen used for this observation")
@Definition("The specimen that was used when this observation was made.")
private Reference specimen; // Specimen used for this observation
@Min("0") @Max("1") @Doco("The device used for the measurement. It is recommended that when information about the device is sent, it is contained in the same Bundle as the Observation the device measured.")
@Definition("The device used to generate the observation data.")
private Reference device; // The device used for the measurement. It is recommended that when information about the device is sent, it is contained in the same Bundle as the Observation the device measured.
@Min("0") @Max("*") @Doco("Provides guide for interpretation")
@Definition("Guidance on how to interpret the value by comparison to a normal or recommended range. Multiple reference ranges are interpreted as an \"OR\". In other words, to represent two distinct target populations, two `referenceRange` elements would be used.")
private List<BackboneElement> referenceRanges = new ArrayList<>(); // Provides guide for interpretation
@Min("0") @Max("*") @Doco("Related resource that belongs to the Observation group")
@Definition("This observation is a group observation (e.g. a battery, a panel of tests, a set of vital sign measurements) that includes the target as a member of the group.")
private List<Reference> hasMembers = new ArrayList<>(); // Related resource that belongs to the Observation group
@Min("0") @Max("*") @Doco("Related measurements the observation is made from")
@Definition("The target resource that represents a measurement from which this observation value is derived. For example, a calculated anion gap or a fetal measurement based on an ultrasound image.")
private List<Reference> derivedFroms = new ArrayList<>(); // Related measurements the observation is made from
@Min("0") @Max("*") @Doco("Component results")
@Definition("Some observations have multiple component observations. These component observations are expressed as separate code value pairs that share the same attributes. Examples include systolic and diastolic component observations for blood pressure measurement and multiple component observations for genetics observations.")
private List<BackboneElement> components = new ArrayList<>(); // Component results
/**
* Parameter-less constructor.
*
*/
public DkCoreBasicObservation() {
}
/**
* Construct an instance of the object, and fill out all the fixed values
*
*/
public DkCoreBasicObservation(IWorkerContext context) {
workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance src = builder.buildPEInstance(CANONICAL_URL, builder.createResource(CANONICAL_URL, false));
load(src);
}
/**
* Populate an instance of the object based on this source object
*
*/
public static DkCoreBasicObservation fromSource(IWorkerContext context, Observation source) {
DkCoreBasicObservation theThing = new DkCoreBasicObservation();
theThing.workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance src = builder.buildPEInstance(CANONICAL_URL, source);
theThing.load(src);
return theThing;
}
public void load(PEInstance src) {
clear();
if (src.hasChild("id")) {
id = ((IdType) src.child("id").asDataType()).getValue();
}
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
for (PEInstance item : src.children("modifierExtension")) {
modifierExtensions.add((Extension) item.asDataType());
}
for (PEInstance item : src.children("identifier")) {
identifiers.add((Identifier) item.asDataType());
}
for (PEInstance item : src.children("basedOn")) {
basedOns.add((Reference) item.asDataType());
}
for (PEInstance item : src.children("partOf")) {
partOfs.add((Reference) item.asDataType());
}
if (src.hasChild("status")) {
status = src.child("status").asDataType().primitiveValue();
}
if (src.hasChild("category")) {
category = (CodeableConcept) src.child("category").asDataType();
}
if (src.hasChild("code")) {
code = (CodeableConcept) src.child("code").asDataType();
}
if (src.hasChild("subject")) {
subject = (Reference) src.child("subject").asDataType();
}
for (PEInstance item : src.children("focus")) {
focus.add((Reference) item.asDataType());
}
if (src.hasChild("encounter")) {
encounter = (Reference) src.child("encounter").asDataType();
}
for (PEInstance item : src.children("performer")) {
performers.add((Reference) item.asDataType());
}
if (src.hasChild("value")) {
value = (Quantity) src.child("value").asDataType();
}
if (src.hasChild("dataAbsentReason")) {
dataAbsentReason = (CodeableConcept) src.child("dataAbsentReason").asDataType();
}
for (PEInstance item : src.children("note")) {
notes.add((Annotation) item.asDataType());
}
if (src.hasChild("method")) {
method = (CodeableConcept) src.child("method").asDataType();
}
if (src.hasChild("specimen")) {
specimen = (Reference) src.child("specimen").asDataType();
}
if (src.hasChild("device")) {
device = (Reference) src.child("device").asDataType();
}
for (PEInstance item : src.children("referenceRange")) {
referenceRanges.add((BackboneElement) item.asElement());
}
for (PEInstance item : src.children("hasMember")) {
hasMembers.add((Reference) item.asDataType());
}
for (PEInstance item : src.children("derivedFrom")) {
derivedFroms.add((Reference) item.asDataType());
}
for (PEInstance item : src.children("component")) {
components.add((BackboneElement) item.asElement());
}
}
/**
* Build an instance of the object based on this source object
*
*/
public Observation build(IWorkerContext context) {
workerContext = context;
Observation theThing = new Observation();
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance tgt = builder.buildPEInstance(CANONICAL_URL, theThing);
save(tgt, false);
return theThing;
}
/**
* Save this profile class into an existing resource (overwriting anything that
* exists in the profile)
*
*/
public void save(IWorkerContext context, Observation dest, boolean nulls) {
workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance tgt = builder.buildPEInstance(CANONICAL_URL, dest);
save(tgt, nulls);
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("id");
if (id != null) {
tgt.makeChild("id").data().setProperty("value", new IdType(id));
}
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("modifierExtension");
for (Extension item : modifierExtensions) {
tgt.addChild("modifierExtension", item);
}
tgt.clear("identifier");
for (Identifier item : identifiers) {
tgt.addChild("identifier", item);
}
tgt.clear("basedOn");
for (Reference item : basedOns) {
tgt.addChild("basedOn", item);
}
tgt.clear("partOf");
for (Reference item : partOfs) {
tgt.addChild("partOf", item);
}
tgt.clear("status");
if (status != null) {
tgt.makeChild("status").data().setProperty("value", new CodeType(status));
}
tgt.clear("category");
if (category != null) {
tgt.addChild("category", category);
}
tgt.clear("code");
if (code != null) {
tgt.addChild("code", code);
}
tgt.clear("subject");
if (subject != null) {
tgt.addChild("subject", subject);
}
tgt.clear("focus");
for (Reference item : focus) {
tgt.addChild("focus", item);
}
tgt.clear("encounter");
if (encounter != null) {
tgt.addChild("encounter", encounter);
}
tgt.clear("performer");
for (Reference item : performers) {
tgt.addChild("performer", item);
}
tgt.clear("value");
if (value != null) {
tgt.addChild("value", value);
}
tgt.clear("dataAbsentReason");
if (dataAbsentReason != null) {
tgt.addChild("dataAbsentReason", dataAbsentReason);
}
tgt.clear("note");
for (Annotation item : notes) {
tgt.addChild("note", item);
}
tgt.clear("method");
if (method != null) {
tgt.addChild("method", method);
}
tgt.clear("specimen");
if (specimen != null) {
tgt.addChild("specimen", specimen);
}
tgt.clear("device");
if (device != null) {
tgt.addChild("device", device);
}
tgt.clear("referenceRange");
for (BackboneElement item : referenceRanges) {
tgt.addChild("referenceRange", item);
}
tgt.clear("hasMember");
for (Reference item : hasMembers) {
tgt.addChild("hasMember", item);
}
tgt.clear("derivedFrom");
for (Reference item : derivedFroms) {
tgt.addChild("derivedFrom", item);
}
tgt.clear("component");
for (BackboneElement item : components) {
tgt.addChild("component", item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public String getId() {
return id;
}
public DkCoreBasicObservation setId(String value) {
this.id = value;
return this;
}
public boolean hasId() {
return id != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Extension> getModifierExtensions() {
if (modifierExtensions == null) { modifierExtensions = new ArrayList<>(); }
return modifierExtensions;
}
public boolean hasModifierExtensions() {
return modifierExtensions != null && !modifierExtensions.isEmpty();
}
public Extension addModifierExtension() {
Extension theThing = new Extension();
getModifierExtensions().add(theThing);
return theThing;
}
public boolean hasModifierExtension(Extension item) {
return hasModifierExtensions() && modifierExtensions.contains(item);
}
public void removeModifierExtension(Extension item) {
if (hasModifierExtension(item)) {
modifierExtensions.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Identifier> getIdentifiers() {
if (identifiers == null) { identifiers = new ArrayList<>(); }
return identifiers;
}
public boolean hasIdentifiers() {
return identifiers != null && !identifiers.isEmpty();
}
public Identifier addIdentifier() {
Identifier theThing = new Identifier();
getIdentifiers().add(theThing);
return theThing;
}
public boolean hasIdentifier(Identifier item) {
return hasIdentifiers() && identifiers.contains(item);
}
public void removeIdentifier(Identifier item) {
if (hasIdentifier(item)) {
identifiers.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Reference> getBasedOns() {
if (basedOns == null) { basedOns = new ArrayList<>(); }
return basedOns;
}
public boolean hasBasedOns() {
return basedOns != null && !basedOns.isEmpty();
}
public Reference addBasedOn() {
Reference theThing = new Reference();
getBasedOns().add(theThing);
return theThing;
}
public boolean hasBasedOn(Reference item) {
return hasBasedOns() && basedOns.contains(item);
}
public void removeBasedOn(Reference item) {
if (hasBasedOn(item)) {
basedOns.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Reference> getPartOfs() {
if (partOfs == null) { partOfs = new ArrayList<>(); }
return partOfs;
}
public boolean hasPartOfs() {
return partOfs != null && !partOfs.isEmpty();
}
public Reference addPartOf() {
Reference theThing = new Reference();
getPartOfs().add(theThing);
return theThing;
}
public boolean hasPartOf(Reference item) {
return hasPartOfs() && partOfs.contains(item);
}
public void removePartOf(Reference item) {
if (hasPartOf(item)) {
partOfs.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public String getStatus() {
return status;
}
public DkCoreBasicObservation setStatus(String value) {
this.status = value;
return this;
}
public boolean hasStatus() {
return status != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public CodeableConcept getCategory() {
if (category == null) { category = new CodeableConcept(); }
return category;
}
public boolean hasCategory() {
return category != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public CodeableConcept getCode() {
if (code == null) { code = new CodeableConcept(); }
return code;
}
public DkCoreBasicObservation setCode(CodeableConcept value) {
this.code = value;
return this;
}
public boolean hasCode() {
return code != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public Reference getSubject() {
if (subject == null) { subject = new Reference(); }
return subject;
}
public DkCoreBasicObservation setSubject(Reference value) {
this.subject = value;
return this;
}
public boolean hasSubject() {
return subject != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Reference> getFocus() {
if (focus == null) { focus = new ArrayList<>(); }
return focus;
}
public boolean hasFocus() {
return focus != null && !focus.isEmpty();
}
public Reference addFocus() {
Reference theThing = new Reference();
getFocus().add(theThing);
return theThing;
}
public boolean hasFocus(Reference item) {
return hasFocus() && focus.contains(item);
}
public void removeFocus(Reference item) {
if (hasFocus(item)) {
focus.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public Reference getEncounter() {
if (encounter == null) { encounter = new Reference(); }
return encounter;
}
public DkCoreBasicObservation setEncounter(Reference value) {
this.encounter = value;
return this;
}
public boolean hasEncounter() {
return encounter != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Reference> getPerformers() {
if (performers == null) { performers = new ArrayList<>(); }
return performers;
}
public boolean hasPerformers() {
return performers != null && !performers.isEmpty();
}
public Reference addPerformer() {
Reference theThing = new Reference();
getPerformers().add(theThing);
return theThing;
}
public boolean hasPerformer(Reference item) {
return hasPerformers() && performers.contains(item);
}
public void removePerformer(Reference item) {
if (hasPerformer(item)) {
performers.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public Quantity getValue() {
if (value == null) { value = new Quantity(); }
return value;
}
public DkCoreBasicObservation setValue(Quantity value) {
this.value = value;
return this;
}
public boolean hasValue() {
return value != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public CodeableConcept getDataAbsentReason() {
if (dataAbsentReason == null) { dataAbsentReason = new CodeableConcept(); }
return dataAbsentReason;
}
public DkCoreBasicObservation setDataAbsentReason(CodeableConcept value) {
this.dataAbsentReason = value;
return this;
}
public boolean hasDataAbsentReason() {
return dataAbsentReason != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Annotation> getNotes() {
if (notes == null) { notes = new ArrayList<>(); }
return notes;
}
public boolean hasNotes() {
return notes != null && !notes.isEmpty();
}
public Annotation addNote() {
Annotation theThing = new Annotation();
getNotes().add(theThing);
return theThing;
}
public boolean hasNote(Annotation item) {
return hasNotes() && notes.contains(item);
}
public void removeNote(Annotation item) {
if (hasNote(item)) {
notes.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public CodeableConcept getMethod() {
if (method == null) { method = new CodeableConcept(); }
return method;
}
public DkCoreBasicObservation setMethod(CodeableConcept value) {
this.method = value;
return this;
}
public boolean hasMethod() {
return method != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public Reference getSpecimen() {
if (specimen == null) { specimen = new Reference(); }
return specimen;
}
public DkCoreBasicObservation setSpecimen(Reference value) {
this.specimen = value;
return this;
}
public boolean hasSpecimen() {
return specimen != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public Reference getDevice() {
if (device == null) { device = new Reference(); }
return device;
}
public DkCoreBasicObservation setDevice(Reference value) {
this.device = value;
return this;
}
public boolean hasDevice() {
return device != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<BackboneElement> getReferenceRanges() {
if (referenceRanges == null) { referenceRanges = new ArrayList<>(); }
return referenceRanges;
}
public boolean hasReferenceRanges() {
return referenceRanges != null && !referenceRanges.isEmpty();
}
public boolean hasReferenceRange(BackboneElement item) {
return hasReferenceRanges() && referenceRanges.contains(item);
}
public void removeReferenceRange(BackboneElement item) {
if (hasReferenceRange(item)) {
referenceRanges.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Reference> getHasMembers() {
if (hasMembers == null) { hasMembers = new ArrayList<>(); }
return hasMembers;
}
public boolean hasHasMembers() {
return hasMembers != null && !hasMembers.isEmpty();
}
public Reference addHasMember() {
Reference theThing = new Reference();
getHasMembers().add(theThing);
return theThing;
}
public boolean hasHasMember(Reference item) {
return hasHasMembers() && hasMembers.contains(item);
}
public void removeHasMember(Reference item) {
if (hasHasMember(item)) {
hasMembers.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Reference> getDerivedFroms() {
if (derivedFroms == null) { derivedFroms = new ArrayList<>(); }
return derivedFroms;
}
public boolean hasDerivedFroms() {
return derivedFroms != null && !derivedFroms.isEmpty();
}
public Reference addDerivedFrom() {
Reference theThing = new Reference();
getDerivedFroms().add(theThing);
return theThing;
}
public boolean hasDerivedFrom(Reference item) {
return hasDerivedFroms() && derivedFroms.contains(item);
}
public void removeDerivedFrom(Reference item) {
if (hasDerivedFrom(item)) {
derivedFroms.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<BackboneElement> getComponents() {
if (components == null) { components = new ArrayList<>(); }
return components;
}
public boolean hasComponents() {
return components != null && !components.isEmpty();
}
public boolean hasComponent(BackboneElement item) {
return hasComponents() && components.contains(item);
}
public void removeComponent(BackboneElement item) {
if (hasComponent(item)) {
components.remove(item);
}
}
public void clear() {
id = null;
extensions.clear();
modifierExtensions.clear();
identifiers.clear();
basedOns.clear();
partOfs.clear();
status = null;
category = null;
code = null;
subject = null;
focus.clear();
encounter = null;
performers.clear();
value = null;
dataAbsentReason = null;
notes.clear();
method = null;
specimen = null;
device = null;
referenceRanges.clear();
hasMembers.clear();
derivedFroms.clear();
components.clear();
}
}

657
org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/profiles/DkCoreCondition.java Normal file
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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public class DkCoreCondition extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-condition|3.2.0";
@Min("0") @Max("1") @Doco("")
private String id; //
@Min("0") @Max("*") @Doco("Extension")
@Definition("An Extension")
private List<Extension> extensions = new ArrayList<>(); // Extension
@Min("0") @Max("1") @Doco("Last date a condition was confirmed valid in its current state")
@Definition("Extension for the last date a Condition-instance was confirmed valid in its current state. E.g. with its current clinical- and verification status, stage and severity. Typically the last performed follow-up")
private Date conditionLastAssertedDate; // Last date a condition was confirmed valid in its current state
@Min("0") @Max("1") @Doco("Date where a condition lost focus in a specific clinical context")
@Definition("Extension for the date where a condition lost focus in a specific clinical context")
private Date notFollowedAnymore; // Date where a condition lost focus in a specific clinical context
@Min("0") @Max("*") @Doco("Extensions that cannot be ignored")
@Definition("May be used to represent additional information that is not part of the basic definition of the resource and that modifies the understanding of the element that contains it and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).")
private List<Extension> modifierExtensions = new ArrayList<>(); // Extensions that cannot be ignored
@Min("0") @Max("*") @Doco("External Ids for this condition")
@Definition("Business identifiers assigned to this condition by the performer or other systems which remain constant as the resource is updated and propagates from server to server.")
private List<Identifier> identifiers = new ArrayList<>(); // External Ids for this condition
@Min("0") @Max("1") @Doco("active | recurrence | relapse | inactive | remission | resolved")
@BindingStrength("required") @ValueSet("http://hl7.org/fhir/ValueSet/condition-clinical|4.0.1")
@Definition("The clinical status of the condition.")
private CodeableConcept clinicalStatus; // active | recurrence | relapse | inactive | remission | resolved
@Min("0") @Max("1") @Doco("unconfirmed | provisional | differential | confirmed | refuted | entered-in-error")
@BindingStrength("required") @ValueSet("http://hl7.org/fhir/ValueSet/condition-ver-status|4.0.1")
@Definition("The verification status to support the clinical status of the condition.")
private CodeableConcept verificationStatus; // unconfirmed | provisional | differential | confirmed | refuted | entered-in-error
@Min("0") @Max("1") @Doco("Identification of the condition, problem or diagnosis")
@BindingStrength("example") @ValueSet("http://hl7.org/fhir/ValueSet/condition-code")
@Definition("Identification of the condition, problem or diagnosis.")
private CodeableConcept code; // Identification of the condition, problem or diagnosis
@Min("1") @Max("1") @Doco("Who has the condition?")
@Definition("Indicates the patient or group who the condition record is associated with.")
private Reference subject;// @NotNull // Who has the condition?
@Min("0") @Max("1") @Doco("Encounter created as part of")
@Definition("The Encounter during which this Condition was created or to which the creation of this record is tightly associated.")
private Reference encounter; // Encounter created as part of
@Min("0") @Max("1") @Doco("Who recorded the condition")
@Definition("Individual who recorded the record and takes responsibility for its content.")
private Reference recorder; // Who recorded the condition
@Min("0") @Max("1") @Doco("Person who asserts this condition")
@Definition("Individual who is making the condition statement.")
private Reference asserter; // Person who asserts this condition
@Min("0") @Max("*") @Doco("Stage/grade, usually assessed formally")
@Definition("Clinical stage or grade of a condition. May include formal severity assessments.")
private List<BackboneElement> stages = new ArrayList<>(); // Stage/grade, usually assessed formally
@Min("0") @Max("*") @Doco("Supporting evidence")
@Definition("Supporting evidence / manifestations that are the basis of the Condition's verification status, such as evidence that confirmed or refuted the condition.")
private List<BackboneElement> evidences = new ArrayList<>(); // Supporting evidence
@Min("0") @Max("*") @Doco("Additional information about the Condition")
@Definition("Additional information about the Condition. This is a general notes/comments entry for description of the Condition, its diagnosis and prognosis.")
private List<Annotation> notes = new ArrayList<>(); // Additional information about the Condition
/**
* Parameter-less constructor.
*
*/
public DkCoreCondition() {
}
/**
* Construct an instance of the object, and fill out all the fixed values
*
*/
public DkCoreCondition(IWorkerContext context) {
workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance src = builder.buildPEInstance(CANONICAL_URL, builder.createResource(CANONICAL_URL, false));
load(src);
}
/**
* Populate an instance of the object based on this source object
*
*/
public static DkCoreCondition fromSource(IWorkerContext context, Condition source) {
DkCoreCondition theThing = new DkCoreCondition();
theThing.workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance src = builder.buildPEInstance(CANONICAL_URL, source);
theThing.load(src);
return theThing;
}
public void load(PEInstance src) {
clear();
if (src.hasChild("id")) {
id = ((IdType) src.child("id").asDataType()).getValue();
}
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
if (src.hasChild("conditionLastAssertedDate")) {
conditionLastAssertedDate = ((DateTimeType) src.child("conditionLastAssertedDate").asDataType()).getValue();
}
if (src.hasChild("notFollowedAnymore")) {
notFollowedAnymore = ((DateTimeType) src.child("notFollowedAnymore").asDataType()).getValue();
}
for (PEInstance item : src.children("modifierExtension")) {
modifierExtensions.add((Extension) item.asDataType());
}
for (PEInstance item : src.children("identifier")) {
identifiers.add((Identifier) item.asDataType());
}
if (src.hasChild("clinicalStatus")) {
clinicalStatus = (CodeableConcept) src.child("clinicalStatus").asDataType();
}
if (src.hasChild("verificationStatus")) {
verificationStatus = (CodeableConcept) src.child("verificationStatus").asDataType();
}
if (src.hasChild("code")) {
code = (CodeableConcept) src.child("code").asDataType();
}
if (src.hasChild("subject")) {
subject = (Reference) src.child("subject").asDataType();
}
if (src.hasChild("encounter")) {
encounter = (Reference) src.child("encounter").asDataType();
}
if (src.hasChild("recorder")) {
recorder = (Reference) src.child("recorder").asDataType();
}
if (src.hasChild("asserter")) {
asserter = (Reference) src.child("asserter").asDataType();
}
for (PEInstance item : src.children("stage")) {
stages.add((BackboneElement) item.asElement());
}
for (PEInstance item : src.children("evidence")) {
evidences.add((BackboneElement) item.asElement());
}
for (PEInstance item : src.children("note")) {
notes.add((Annotation) item.asDataType());
}
}
/**
* Build an instance of the object based on this source object
*
*/
public Condition build(IWorkerContext context) {
workerContext = context;
Condition theThing = new Condition();
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance tgt = builder.buildPEInstance(CANONICAL_URL, theThing);
save(tgt, false);
return theThing;
}
/**
* Save this profile class into an existing resource (overwriting anything that
* exists in the profile)
*
*/
public void save(IWorkerContext context, Condition dest, boolean nulls) {
workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance tgt = builder.buildPEInstance(CANONICAL_URL, dest);
save(tgt, nulls);
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("id");
if (id != null) {
tgt.makeChild("id").data().setProperty("value", new IdType(id));
}
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("conditionLastAssertedDate");
if (conditionLastAssertedDate != null) {
tgt.makeChild("conditionLastAssertedDate").data().setProperty("value[x]", new DateTimeType(conditionLastAssertedDate));
}
tgt.clear("notFollowedAnymore");
if (notFollowedAnymore != null) {
tgt.makeChild("notFollowedAnymore").data().setProperty("value[x]", new DateTimeType(notFollowedAnymore));
}
tgt.clear("modifierExtension");
for (Extension item : modifierExtensions) {
tgt.addChild("modifierExtension", item);
}
tgt.clear("identifier");
for (Identifier item : identifiers) {
tgt.addChild("identifier", item);
}
tgt.clear("clinicalStatus");
if (clinicalStatus != null) {
tgt.addChild("clinicalStatus", clinicalStatus);
}
tgt.clear("verificationStatus");
if (verificationStatus != null) {
tgt.addChild("verificationStatus", verificationStatus);
}
tgt.clear("code");
if (code != null) {
tgt.addChild("code", code);
}
tgt.clear("subject");
if (subject != null) {
tgt.addChild("subject", subject);
}
tgt.clear("encounter");
if (encounter != null) {
tgt.addChild("encounter", encounter);
}
tgt.clear("recorder");
if (recorder != null) {
tgt.addChild("recorder", recorder);
}
tgt.clear("asserter");
if (asserter != null) {
tgt.addChild("asserter", asserter);
}
tgt.clear("stage");
for (BackboneElement item : stages) {
tgt.addChild("stage", item);
}
tgt.clear("evidence");
for (BackboneElement item : evidences) {
tgt.addChild("evidence", item);
}
tgt.clear("note");
for (Annotation item : notes) {
tgt.addChild("note", item);
}
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public String getId() {
return id;
}
public DkCoreCondition setId(String value) {
this.id = value;
return this;
}
public boolean hasId() {
return id != null;
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public Date getConditionLastAssertedDate() {
return conditionLastAssertedDate;
}
public DkCoreCondition setConditionLastAssertedDate(Date value) {
this.conditionLastAssertedDate = value;
return this;
}
public boolean hasConditionLastAssertedDate() {
return conditionLastAssertedDate != null;
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public Date getNotFollowedAnymore() {
return notFollowedAnymore;
}
public DkCoreCondition setNotFollowedAnymore(Date value) {
this.notFollowedAnymore = value;
return this;
}
public boolean hasNotFollowedAnymore() {
return notFollowedAnymore != null;
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public List<Extension> getModifierExtensions() {
if (modifierExtensions == null) { modifierExtensions = new ArrayList<>(); }
return modifierExtensions;
}
public boolean hasModifierExtensions() {
return modifierExtensions != null && !modifierExtensions.isEmpty();
}
public Extension addModifierExtension() {
Extension theThing = new Extension();
getModifierExtensions().add(theThing);
return theThing;
}
public boolean hasModifierExtension(Extension item) {
return hasModifierExtensions() && modifierExtensions.contains(item);
}
public void removeModifierExtension(Extension item) {
if (hasModifierExtension(item)) {
modifierExtensions.remove(item);
}
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public List<Identifier> getIdentifiers() {
if (identifiers == null) { identifiers = new ArrayList<>(); }
return identifiers;
}
public boolean hasIdentifiers() {
return identifiers != null && !identifiers.isEmpty();
}
public Identifier addIdentifier() {
Identifier theThing = new Identifier();
getIdentifiers().add(theThing);
return theThing;
}
public boolean hasIdentifier(Identifier item) {
return hasIdentifiers() && identifiers.contains(item);
}
public void removeIdentifier(Identifier item) {
if (hasIdentifier(item)) {
identifiers.remove(item);
}
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public CodeableConcept getClinicalStatus() {
if (clinicalStatus == null) { clinicalStatus = new CodeableConcept(); }
return clinicalStatus;
}
public DkCoreCondition setClinicalStatus(CodeableConcept value) {
this.clinicalStatus = value;
return this;
}
public boolean hasClinicalStatus() {
return clinicalStatus != null;
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public CodeableConcept getVerificationStatus() {
if (verificationStatus == null) { verificationStatus = new CodeableConcept(); }
return verificationStatus;
}
public DkCoreCondition setVerificationStatus(CodeableConcept value) {
this.verificationStatus = value;
return this;
}
public boolean hasVerificationStatus() {
return verificationStatus != null;
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public CodeableConcept getCode() {
if (code == null) { code = new CodeableConcept(); }
return code;
}
public DkCoreCondition setCode(CodeableConcept value) {
this.code = value;
return this;
}
public boolean hasCode() {
return code != null;
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public Reference getSubject() {
if (subject == null) { subject = new Reference(); }
return subject;
}
public DkCoreCondition setSubject(Reference value) {
this.subject = value;
return this;
}
public boolean hasSubject() {
return subject != null;
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public Reference getEncounter() {
if (encounter == null) { encounter = new Reference(); }
return encounter;
}
public DkCoreCondition setEncounter(Reference value) {
this.encounter = value;
return this;
}
public boolean hasEncounter() {
return encounter != null;
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public Reference getRecorder() {
if (recorder == null) { recorder = new Reference(); }
return recorder;
}
public DkCoreCondition setRecorder(Reference value) {
this.recorder = value;
return this;
}
public boolean hasRecorder() {
return recorder != null;
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public Reference getAsserter() {
if (asserter == null) { asserter = new Reference(); }
return asserter;
}
public DkCoreCondition setAsserter(Reference value) {
this.asserter = value;
return this;
}
public boolean hasAsserter() {
return asserter != null;
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public List<BackboneElement> getStages() {
if (stages == null) { stages = new ArrayList<>(); }
return stages;
}
public boolean hasStages() {
return stages != null && !stages.isEmpty();
}
public boolean hasStage(BackboneElement item) {
return hasStages() && stages.contains(item);
}
public void removeStage(BackboneElement item) {
if (hasStage(item)) {
stages.remove(item);
}
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public List<BackboneElement> getEvidences() {
if (evidences == null) { evidences = new ArrayList<>(); }
return evidences;
}
public boolean hasEvidences() {
return evidences != null && !evidences.isEmpty();
}
public boolean hasEvidence(BackboneElement item) {
return hasEvidences() && evidences.contains(item);
}
public void removeEvidence(BackboneElement item) {
if (hasEvidence(item)) {
evidences.remove(item);
}
}
/**
* A clinical condition, problem, diagnosis, or other event, situation, issue, or
* clinical concept that has risen to a level of concern.
*
*/
public List<Annotation> getNotes() {
if (notes == null) { notes = new ArrayList<>(); }
return notes;
}
public boolean hasNotes() {
return notes != null && !notes.isEmpty();
}
public Annotation addNote() {
Annotation theThing = new Annotation();
getNotes().add(theThing);
return theThing;
}
public boolean hasNote(Annotation item) {
return hasNotes() && notes.contains(item);
}
public void removeNote(Annotation item) {
if (hasNote(item)) {
notes.remove(item);
}
}
public void clear() {
id = null;
extensions.clear();
conditionLastAssertedDate = null;
notFollowedAnymore = null;
modifierExtensions.clear();
identifiers.clear();
clinicalStatus = null;
verificationStatus = null;
code = null;
subject = null;
encounter = null;
recorder = null;
asserter = null;
stages.clear();
evidences.clear();
notes.clear();
}
}

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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public class DkCoreCprIdentifier extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-cpr-identifier|3.2.0";
@Min("0") @Max("*") @Doco("Additional content defined by implementations")
@Definition("May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.")
private List<Extension> extensions = new ArrayList<>(); // Additional content defined by implementations
@Min("1") @Max("1") @Doco("The namespace for the identifier value")
@Definition("Establishes the namespace for the value - that is, a URL that describes a set values that are unique.")
private String system;// @NotNull // The namespace for the identifier value
@Min("1") @Max("1") @Doco("The value that is unique")
@Definition("The portion of the identifier typically relevant to the user and which is unique within the context of the system.")
private String value;// @NotNull // The value that is unique
@Min("0") @Max("1") @Doco("Time period when id is/was valid for use")
@Definition("Time period during which identifier is/was valid for use.")
private Period period; // Time period when id is/was valid for use
@Min("0") @Max("1") @Doco("Organization that issued id (may be just text)")
@Definition("Organization that issued/manages the identifier.")
private Reference assigner; // Organization that issued id (may be just text)
/**
* Parameter-less constructor.
*
*/
public DkCoreCprIdentifier() {
initFixedValues();
}
/**
* Used when loading other models
*
*/
public static DkCoreCprIdentifier fromSource(PEInstance source) {
DkCoreCprIdentifier theThing = new DkCoreCprIdentifier();
theThing.workerContext = source.getContext();
theThing.load(source);
return theThing;
}
public void load(PEInstance src) {
clear();
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
if (src.hasChild("system")) {
system = ((UriType) src.child("system").asDataType()).getValue();
}
if (src.hasChild("value")) {
value = ((StringType) src.child("value").asDataType()).getValue();
}
if (src.hasChild("period")) {
period = (Period) src.child("period").asDataType();
}
if (src.hasChild("assigner")) {
assigner = (Reference) src.child("assigner").asDataType();
}
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("system");
if (system != null) {
tgt.makeChild("system").data().setProperty("value", new UriType(system));
}
tgt.clear("value");
if (value != null) {
tgt.makeChild("value").data().setProperty("value", new StringType(value));
}
tgt.clear("period");
if (period != null) {
tgt.addChild("period", period);
}
tgt.clear("assigner");
if (assigner != null) {
tgt.addChild("assigner", assigner);
}
}
private void initFixedValues() {
system = "urn:oid:1.2.208.176.1.2";
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getSystem() {
return system;
}
public boolean hasSystem() {
return true;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getValue() {
return value;
}
public DkCoreCprIdentifier setValue(String value) {
this.value = value;
return this;
}
public boolean hasValue() {
return value != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Period getPeriod() {
if (period == null) { period = new Period(); }
return period;
}
public DkCoreCprIdentifier setPeriod(Period value) {
this.period = value;
return this;
}
public boolean hasPeriod() {
return period != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Reference getAssigner() {
if (assigner == null) { assigner = new Reference(); }
return assigner;
}
public DkCoreCprIdentifier setAssigner(Reference value) {
this.assigner = value;
return this;
}
public boolean hasAssigner() {
return assigner != null;
}
public void clear() {
extensions.clear();
system = null;
value = null;
period = null;
assigner = null;
}
}

328
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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public class DkCoreDeCprIdentifier extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-d-ecpr-identifier|3.2.0";
public enum DkCoreDeCPRValueSet {
URNOID122081761613, // "D-eCPR" = http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes#urn:oid:1.2.208.176.1.6.1.3
URNOID122081761613177, // "D-eCPR fra Region Sjælland" = http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes#urn:oid:1.2.208.176.1.6.1.3.177
URNOID122081761613179, // "D-eCPR fra Region Nordjylland" = http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes#urn:oid:1.2.208.176.1.6.1.3.179
URNOID122081761613181, // "D-eCPR fra Region Midtjylland" = http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes#urn:oid:1.2.208.176.1.6.1.3.181
URNOID122081761613183, // "D-eCPR fra Region Syddanmark" = http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes#urn:oid:1.2.208.176.1.6.1.3.183
URNOID122081761613187; // "D-eCPR fra Region Hovedstaden" = http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes#urn:oid:1.2.208.176.1.6.1.3.187
public static DkCoreDeCPRValueSet fromCode(String s) {
switch (s) {
case "urn:oid:1.2.208.176.1.6.1.3": return URNOID122081761613;
case "urn:oid:1.2.208.176.1.6.1.3.177": return URNOID122081761613177;
case "urn:oid:1.2.208.176.1.6.1.3.179": return URNOID122081761613179;
case "urn:oid:1.2.208.176.1.6.1.3.181": return URNOID122081761613181;
case "urn:oid:1.2.208.176.1.6.1.3.183": return URNOID122081761613183;
case "urn:oid:1.2.208.176.1.6.1.3.187": return URNOID122081761613187;
default: return null;
}
}
public static DkCoreDeCPRValueSet fromCoding(Coding c) {
if ("http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes".equals(c.getSystem()) && "urn:oid:1.2.208.176.1.6.1.3".equals(c.getCode())) {
return URNOID122081761613;
}
if ("http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes".equals(c.getSystem()) && "urn:oid:1.2.208.176.1.6.1.3.177".equals(c.getCode())) {
return URNOID122081761613177;
}
if ("http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes".equals(c.getSystem()) && "urn:oid:1.2.208.176.1.6.1.3.179".equals(c.getCode())) {
return URNOID122081761613179;
}
if ("http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes".equals(c.getSystem()) && "urn:oid:1.2.208.176.1.6.1.3.181".equals(c.getCode())) {
return URNOID122081761613181;
}
if ("http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes".equals(c.getSystem()) && "urn:oid:1.2.208.176.1.6.1.3.183".equals(c.getCode())) {
return URNOID122081761613183;
}
if ("http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes".equals(c.getSystem()) && "urn:oid:1.2.208.176.1.6.1.3.187".equals(c.getCode())) {
return URNOID122081761613187;
}
return null;
}
public static DkCoreDeCPRValueSet fromCodeableConcept(CodeableConcept cc) {
for (Coding c : cc.getCoding()) {
DkCoreDeCPRValueSet v = fromCoding(c);
if (v != null) {
return v;
}
}
return null;
}
public String toDisplay() {
switch (this) {
case URNOID122081761613: return "D-eCPR";
case URNOID122081761613177: return "D-eCPR fra Region Sjælland";
case URNOID122081761613179: return "D-eCPR fra Region Nordjylland";
case URNOID122081761613181: return "D-eCPR fra Region Midtjylland";
case URNOID122081761613183: return "D-eCPR fra Region Syddanmark";
case URNOID122081761613187: return "D-eCPR fra Region Hovedstaden";
default: return null;
}
}
public String toCode() {
switch (this) {
case URNOID122081761613: return "urn:oid:1.2.208.176.1.6.1.3";
case URNOID122081761613177: return "urn:oid:1.2.208.176.1.6.1.3.177";
case URNOID122081761613179: return "urn:oid:1.2.208.176.1.6.1.3.179";
case URNOID122081761613181: return "urn:oid:1.2.208.176.1.6.1.3.181";
case URNOID122081761613183: return "urn:oid:1.2.208.176.1.6.1.3.183";
case URNOID122081761613187: return "urn:oid:1.2.208.176.1.6.1.3.187";
default: return null;
}
}
public Coding toCoding() {
switch (this) {
case URNOID122081761613: return new Coding().setSystem("http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes").setCode("urn:oid:1.2.208.176.1.6.1.3");
case URNOID122081761613177: return new Coding().setSystem("http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes").setCode("urn:oid:1.2.208.176.1.6.1.3.177");
case URNOID122081761613179: return new Coding().setSystem("http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes").setCode("urn:oid:1.2.208.176.1.6.1.3.179");
case URNOID122081761613181: return new Coding().setSystem("http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes").setCode("urn:oid:1.2.208.176.1.6.1.3.181");
case URNOID122081761613183: return new Coding().setSystem("http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes").setCode("urn:oid:1.2.208.176.1.6.1.3.183");
case URNOID122081761613187: return new Coding().setSystem("http://hl7.dk/fhir/core/CodeSystem/dk-core-d-ecpr-codes").setCode("urn:oid:1.2.208.176.1.6.1.3.187");
default: return null;
}
}
public CodeableConcept toCodeableConcept() {
Coding c = toCoding();
return c == null ? null : new CodeableConcept().addCoding(c);
}
}
@Min("0") @Max("*") @Doco("Additional content defined by implementations")
@Definition("May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.")
private List<Extension> extensions = new ArrayList<>(); // Additional content defined by implementations
@Min("1") @Max("1") @Doco("The namespace for the identifier value")
@BindingStrength("required") @ValueSet("http://hl7.dk/fhir/core/ValueSet/DkCoreDeCPRValueSet")
@Definition("Establishes the namespace for the value - that is, a URL that describes a set values that are unique.")
private DkCoreDeCPRValueSet system;// @NotNull // The namespace for the identifier value
@Min("1") @Max("1") @Doco("The value that is unique")
@Definition("The portion of the identifier typically relevant to the user and which is unique within the context of the system.")
private String value;// @NotNull // The value that is unique
@Min("0") @Max("1") @Doco("Time period when id is/was valid for use")
@Definition("Time period during which identifier is/was valid for use.")
private Period period; // Time period when id is/was valid for use
@Min("0") @Max("1") @Doco("Organization that issued id (may be just text)")
@Definition("Organization that issued/manages the identifier.")
private Reference assigner; // Organization that issued id (may be just text)
/**
* Parameter-less constructor.
*
*/
public DkCoreDeCprIdentifier() {
}
/**
* Used when loading other models
*
*/
public static DkCoreDeCprIdentifier fromSource(PEInstance source) {
DkCoreDeCprIdentifier theThing = new DkCoreDeCprIdentifier();
theThing.workerContext = source.getContext();
theThing.load(source);
return theThing;
}
public void load(PEInstance src) {
clear();
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
if (src.hasChild("system")) {
system = DkCoreDeCPRValueSet.fromCode(src.child("system").asDataType().primitiveValue());
}
if (src.hasChild("value")) {
value = ((StringType) src.child("value").asDataType()).getValue();
}
if (src.hasChild("period")) {
period = (Period) src.child("period").asDataType();
}
if (src.hasChild("assigner")) {
assigner = (Reference) src.child("assigner").asDataType();
}
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("system");
if (system != null) {
tgt.addChild("system", system.toCode());
}
tgt.clear("value");
if (value != null) {
tgt.makeChild("value").data().setProperty("value", new StringType(value));
}
tgt.clear("period");
if (period != null) {
tgt.addChild("period", period);
}
tgt.clear("assigner");
if (assigner != null) {
tgt.addChild("assigner", assigner);
}
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public DkCoreDeCPRValueSet getSystem() {
return system;
}
public DkCoreDeCprIdentifier setSystem(DkCoreDeCPRValueSet value) {
this.system = value;
return this;
}
public boolean hasSystem() {
return system != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getValue() {
return value;
}
public DkCoreDeCprIdentifier setValue(String value) {
this.value = value;
return this;
}
public boolean hasValue() {
return value != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Period getPeriod() {
if (period == null) { period = new Period(); }
return period;
}
public DkCoreDeCprIdentifier setPeriod(Period value) {
this.period = value;
return this;
}
public boolean hasPeriod() {
return period != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Reference getAssigner() {
if (assigner == null) { assigner = new Reference(); }
return assigner;
}
public DkCoreDeCprIdentifier setAssigner(Reference value) {
this.assigner = value;
return this;
}
public boolean hasAssigner() {
return assigner != null;
}
public void clear() {
extensions.clear();
system = null;
value = null;
period = null;
assigner = null;
}
}

916
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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public class DkCoreObservation extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-observation|3.2.0";
@Min("0") @Max("1") @Doco("")
private String id; //
@Min("0") @Max("*") @Doco("Additional content defined by implementations")
@Definition("May be used to represent additional information that is not part of the basic definition of the resource. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.")
private List<Extension> extensions = new ArrayList<>(); // Additional content defined by implementations
@Min("0") @Max("*") @Doco("Extensions that cannot be ignored")
@Definition("May be used to represent additional information that is not part of the basic definition of the resource and that modifies the understanding of the element that contains it and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).")
private List<Extension> modifierExtensions = new ArrayList<>(); // Extensions that cannot be ignored
@Min("0") @Max("*") @Doco("Business Identifier for observation")
@Definition("A unique identifier assigned to this observation.")
private List<Identifier> identifiers = new ArrayList<>(); // Business Identifier for observation
@Min("0") @Max("*") @Doco("Fulfills plan, proposal or order")
@Definition("A plan, proposal or order that is fulfilled in whole or in part by this event. For example, a MedicationRequest may require a patient to have laboratory test performed before it is dispensed.")
private List<Reference> basedOns = new ArrayList<>(); // Fulfills plan, proposal or order
@Min("0") @Max("*") @Doco("Part of referenced event")
@Definition("A larger event of which this particular Observation is a component or step. For example, an observation as part of a procedure.")
private List<Reference> partOfs = new ArrayList<>(); // Part of referenced event
@Min("1") @Max("1") @Doco("registered | preliminary | final | amended +")
@BindingStrength("required") @ValueSet("http://hl7.org/fhir/ValueSet/observation-status|4.0.1")
@Definition("The status of the result value.")
private String status;// @NotNull // registered | preliminary | final | amended +
@Min("1") @Max("1") @Doco("Type of observation (code / type)")
@BindingStrength("example") @ValueSet("http://hl7.org/fhir/ValueSet/observation-codes")
@Definition("Describes what was observed. Sometimes this is called the observation \"name\".")
private CodeableConcept code;// @NotNull // Type of observation (code / type)
@Min("1") @Max("1") @Doco("Who and/or what the observation is about")
@Definition("The patient, or group of patients, location, or device this observation is about and into whose record the observation is placed. If the actual focus of the observation is different from the subject (or a sample of, part, or region of the subject), the `focus` element or the `code` itself specifies the actual focus of the observation.")
private Reference subject;// @NotNull // Who and/or what the observation is about
@Min("0") @Max("*") @Doco("What the observation is about, when it is not about the subject of record")
@Definition("The actual focus of an observation when it is not the patient of record representing something or someone associated with the patient such as a spouse, parent, fetus, or donor. For example, fetus observations in a mother's record. The focus of an observation could also be an existing condition, an intervention, the subject's diet, another observation of the subject, or a body structure such as tumor or implanted device. An example use case would be using the Observation resource to capture whether the mother is trained to change her child's tracheostomy tube. In this example, the child is the patient of record and the mother is the focus.")
private List<Reference> focus = new ArrayList<>(); // What the observation is about, when it is not about the subject of record
@Min("0") @Max("1") @Doco("Healthcare event during which this observation is made")
@Definition("The healthcare event (e.g. a patient and healthcare provider interaction) during which this observation is made.")
private Reference encounter; // Healthcare event during which this observation is made
@Min("0") @Max("*") @Doco("Who is responsible for the observation")
@Definition("Who was responsible for asserting the observed value as \"true\".")
private List<Reference> performers = new ArrayList<>(); // Who is responsible for the observation
@Min("0") @Max("1") @Doco("Actual result")
@Definition("The information determined as a result of making the observation, if the information has a simple value.")
private Quantity value; // Actual result
@Min("0") @Max("1") @Doco("Why the result is missing")
@BindingStrength("extensible") @ValueSet("http://hl7.org/fhir/ValueSet/data-absent-reason")
@Definition("Provides a reason why the expected value in the element Observation.value[x] is missing.")
private CodeableConcept dataAbsentReason; // Why the result is missing
@Min("0") @Max("*") @Doco("Comments about the observation")
@Definition("Comments about the observation or the results.")
private List<Annotation> notes = new ArrayList<>(); // Comments about the observation
@Min("0") @Max("1") @Doco("How it was done")
@BindingStrength("example") @ValueSet("http://hl7.org/fhir/ValueSet/observation-methods")
@Definition("Indicates the mechanism used to perform the observation.")
private CodeableConcept method; // How it was done
@Min("0") @Max("1") @Doco("Specimen used for this observation")
@Definition("The specimen that was used when this observation was made.")
private Reference specimen; // Specimen used for this observation
@Min("0") @Max("1") @Doco("The device used for the measurement. It is recommended that when information about the device is sent, it is contained in the same Bundle as the Observation the device measured.")
@Definition("The device used to generate the observation data.")
private Reference device; // The device used for the measurement. It is recommended that when information about the device is sent, it is contained in the same Bundle as the Observation the device measured.
@Min("0") @Max("*") @Doco("Provides guide for interpretation")
@Definition("Guidance on how to interpret the value by comparison to a normal or recommended range. Multiple reference ranges are interpreted as an \"OR\". In other words, to represent two distinct target populations, two `referenceRange` elements would be used.")
private List<BackboneElement> referenceRanges = new ArrayList<>(); // Provides guide for interpretation
@Min("0") @Max("*") @Doco("Related resource that belongs to the Observation group")
@Definition("This observation is a group observation (e.g. a battery, a panel of tests, a set of vital sign measurements) that includes the target as a member of the group.")
private List<Reference> hasMembers = new ArrayList<>(); // Related resource that belongs to the Observation group
@Min("0") @Max("*") @Doco("Related measurements the observation is made from")
@Definition("The target resource that represents a measurement from which this observation value is derived. For example, a calculated anion gap or a fetal measurement based on an ultrasound image.")
private List<Reference> derivedFroms = new ArrayList<>(); // Related measurements the observation is made from
@Min("0") @Max("*") @Doco("Component results")
@Definition("Some observations have multiple component observations. These component observations are expressed as separate code value pairs that share the same attributes. Examples include systolic and diastolic component observations for blood pressure measurement and multiple component observations for genetics observations.")
private List<BackboneElement> components = new ArrayList<>(); // Component results
/**
* Parameter-less constructor.
*
*/
public DkCoreObservation() {
}
/**
* Construct an instance of the object, and fill out all the fixed values
*
*/
public DkCoreObservation(IWorkerContext context) {
workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance src = builder.buildPEInstance(CANONICAL_URL, builder.createResource(CANONICAL_URL, false));
load(src);
}
/**
* Populate an instance of the object based on this source object
*
*/
public static DkCoreObservation fromSource(IWorkerContext context, Observation source) {
DkCoreObservation theThing = new DkCoreObservation();
theThing.workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance src = builder.buildPEInstance(CANONICAL_URL, source);
theThing.load(src);
return theThing;
}
public void load(PEInstance src) {
clear();
if (src.hasChild("id")) {
id = ((IdType) src.child("id").asDataType()).getValue();
}
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
for (PEInstance item : src.children("modifierExtension")) {
modifierExtensions.add((Extension) item.asDataType());
}
for (PEInstance item : src.children("identifier")) {
identifiers.add((Identifier) item.asDataType());
}
for (PEInstance item : src.children("basedOn")) {
basedOns.add((Reference) item.asDataType());
}
for (PEInstance item : src.children("partOf")) {
partOfs.add((Reference) item.asDataType());
}
if (src.hasChild("status")) {
status = src.child("status").asDataType().primitiveValue();
}
if (src.hasChild("code")) {
code = (CodeableConcept) src.child("code").asDataType();
}
if (src.hasChild("subject")) {
subject = (Reference) src.child("subject").asDataType();
}
for (PEInstance item : src.children("focus")) {
focus.add((Reference) item.asDataType());
}
if (src.hasChild("encounter")) {
encounter = (Reference) src.child("encounter").asDataType();
}
for (PEInstance item : src.children("performer")) {
performers.add((Reference) item.asDataType());
}
if (src.hasChild("value")) {
value = (Quantity) src.child("value").asDataType();
}
if (src.hasChild("dataAbsentReason")) {
dataAbsentReason = (CodeableConcept) src.child("dataAbsentReason").asDataType();
}
for (PEInstance item : src.children("note")) {
notes.add((Annotation) item.asDataType());
}
if (src.hasChild("method")) {
method = (CodeableConcept) src.child("method").asDataType();
}
if (src.hasChild("specimen")) {
specimen = (Reference) src.child("specimen").asDataType();
}
if (src.hasChild("device")) {
device = (Reference) src.child("device").asDataType();
}
for (PEInstance item : src.children("referenceRange")) {
referenceRanges.add((BackboneElement) item.asElement());
}
for (PEInstance item : src.children("hasMember")) {
hasMembers.add((Reference) item.asDataType());
}
for (PEInstance item : src.children("derivedFrom")) {
derivedFroms.add((Reference) item.asDataType());
}
for (PEInstance item : src.children("component")) {
components.add((BackboneElement) item.asElement());
}
}
/**
* Build an instance of the object based on this source object
*
*/
public Observation build(IWorkerContext context) {
workerContext = context;
Observation theThing = new Observation();
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance tgt = builder.buildPEInstance(CANONICAL_URL, theThing);
save(tgt, false);
return theThing;
}
/**
* Save this profile class into an existing resource (overwriting anything that
* exists in the profile)
*
*/
public void save(IWorkerContext context, Observation dest, boolean nulls) {
workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance tgt = builder.buildPEInstance(CANONICAL_URL, dest);
save(tgt, nulls);
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("id");
if (id != null) {
tgt.makeChild("id").data().setProperty("value", new IdType(id));
}
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("modifierExtension");
for (Extension item : modifierExtensions) {
tgt.addChild("modifierExtension", item);
}
tgt.clear("identifier");
for (Identifier item : identifiers) {
tgt.addChild("identifier", item);
}
tgt.clear("basedOn");
for (Reference item : basedOns) {
tgt.addChild("basedOn", item);
}
tgt.clear("partOf");
for (Reference item : partOfs) {
tgt.addChild("partOf", item);
}
tgt.clear("status");
if (status != null) {
tgt.makeChild("status").data().setProperty("value", new CodeType(status));
}
tgt.clear("code");
if (code != null) {
tgt.addChild("code", code);
}
tgt.clear("subject");
if (subject != null) {
tgt.addChild("subject", subject);
}
tgt.clear("focus");
for (Reference item : focus) {
tgt.addChild("focus", item);
}
tgt.clear("encounter");
if (encounter != null) {
tgt.addChild("encounter", encounter);
}
tgt.clear("performer");
for (Reference item : performers) {
tgt.addChild("performer", item);
}
tgt.clear("value");
if (value != null) {
tgt.addChild("value", value);
}
tgt.clear("dataAbsentReason");
if (dataAbsentReason != null) {
tgt.addChild("dataAbsentReason", dataAbsentReason);
}
tgt.clear("note");
for (Annotation item : notes) {
tgt.addChild("note", item);
}
tgt.clear("method");
if (method != null) {
tgt.addChild("method", method);
}
tgt.clear("specimen");
if (specimen != null) {
tgt.addChild("specimen", specimen);
}
tgt.clear("device");
if (device != null) {
tgt.addChild("device", device);
}
tgt.clear("referenceRange");
for (BackboneElement item : referenceRanges) {
tgt.addChild("referenceRange", item);
}
tgt.clear("hasMember");
for (Reference item : hasMembers) {
tgt.addChild("hasMember", item);
}
tgt.clear("derivedFrom");
for (Reference item : derivedFroms) {
tgt.addChild("derivedFrom", item);
}
tgt.clear("component");
for (BackboneElement item : components) {
tgt.addChild("component", item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public String getId() {
return id;
}
public DkCoreObservation setId(String value) {
this.id = value;
return this;
}
public boolean hasId() {
return id != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Extension> getModifierExtensions() {
if (modifierExtensions == null) { modifierExtensions = new ArrayList<>(); }
return modifierExtensions;
}
public boolean hasModifierExtensions() {
return modifierExtensions != null && !modifierExtensions.isEmpty();
}
public Extension addModifierExtension() {
Extension theThing = new Extension();
getModifierExtensions().add(theThing);
return theThing;
}
public boolean hasModifierExtension(Extension item) {
return hasModifierExtensions() && modifierExtensions.contains(item);
}
public void removeModifierExtension(Extension item) {
if (hasModifierExtension(item)) {
modifierExtensions.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Identifier> getIdentifiers() {
if (identifiers == null) { identifiers = new ArrayList<>(); }
return identifiers;
}
public boolean hasIdentifiers() {
return identifiers != null && !identifiers.isEmpty();
}
public Identifier addIdentifier() {
Identifier theThing = new Identifier();
getIdentifiers().add(theThing);
return theThing;
}
public boolean hasIdentifier(Identifier item) {
return hasIdentifiers() && identifiers.contains(item);
}
public void removeIdentifier(Identifier item) {
if (hasIdentifier(item)) {
identifiers.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Reference> getBasedOns() {
if (basedOns == null) { basedOns = new ArrayList<>(); }
return basedOns;
}
public boolean hasBasedOns() {
return basedOns != null && !basedOns.isEmpty();
}
public Reference addBasedOn() {
Reference theThing = new Reference();
getBasedOns().add(theThing);
return theThing;
}
public boolean hasBasedOn(Reference item) {
return hasBasedOns() && basedOns.contains(item);
}
public void removeBasedOn(Reference item) {
if (hasBasedOn(item)) {
basedOns.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Reference> getPartOfs() {
if (partOfs == null) { partOfs = new ArrayList<>(); }
return partOfs;
}
public boolean hasPartOfs() {
return partOfs != null && !partOfs.isEmpty();
}
public Reference addPartOf() {
Reference theThing = new Reference();
getPartOfs().add(theThing);
return theThing;
}
public boolean hasPartOf(Reference item) {
return hasPartOfs() && partOfs.contains(item);
}
public void removePartOf(Reference item) {
if (hasPartOf(item)) {
partOfs.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public String getStatus() {
return status;
}
public DkCoreObservation setStatus(String value) {
this.status = value;
return this;
}
public boolean hasStatus() {
return status != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public CodeableConcept getCode() {
if (code == null) { code = new CodeableConcept(); }
return code;
}
public DkCoreObservation setCode(CodeableConcept value) {
this.code = value;
return this;
}
public boolean hasCode() {
return code != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public Reference getSubject() {
if (subject == null) { subject = new Reference(); }
return subject;
}
public DkCoreObservation setSubject(Reference value) {
this.subject = value;
return this;
}
public boolean hasSubject() {
return subject != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Reference> getFocus() {
if (focus == null) { focus = new ArrayList<>(); }
return focus;
}
public boolean hasFocus() {
return focus != null && !focus.isEmpty();
}
public Reference addFocus() {
Reference theThing = new Reference();
getFocus().add(theThing);
return theThing;
}
public boolean hasFocus(Reference item) {
return hasFocus() && focus.contains(item);
}
public void removeFocus(Reference item) {
if (hasFocus(item)) {
focus.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public Reference getEncounter() {
if (encounter == null) { encounter = new Reference(); }
return encounter;
}
public DkCoreObservation setEncounter(Reference value) {
this.encounter = value;
return this;
}
public boolean hasEncounter() {
return encounter != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Reference> getPerformers() {
if (performers == null) { performers = new ArrayList<>(); }
return performers;
}
public boolean hasPerformers() {
return performers != null && !performers.isEmpty();
}
public Reference addPerformer() {
Reference theThing = new Reference();
getPerformers().add(theThing);
return theThing;
}
public boolean hasPerformer(Reference item) {
return hasPerformers() && performers.contains(item);
}
public void removePerformer(Reference item) {
if (hasPerformer(item)) {
performers.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public Quantity getValue() {
if (value == null) { value = new Quantity(); }
return value;
}
public DkCoreObservation setValue(Quantity value) {
this.value = value;
return this;
}
public boolean hasValue() {
return value != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public CodeableConcept getDataAbsentReason() {
if (dataAbsentReason == null) { dataAbsentReason = new CodeableConcept(); }
return dataAbsentReason;
}
public DkCoreObservation setDataAbsentReason(CodeableConcept value) {
this.dataAbsentReason = value;
return this;
}
public boolean hasDataAbsentReason() {
return dataAbsentReason != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Annotation> getNotes() {
if (notes == null) { notes = new ArrayList<>(); }
return notes;
}
public boolean hasNotes() {
return notes != null && !notes.isEmpty();
}
public Annotation addNote() {
Annotation theThing = new Annotation();
getNotes().add(theThing);
return theThing;
}
public boolean hasNote(Annotation item) {
return hasNotes() && notes.contains(item);
}
public void removeNote(Annotation item) {
if (hasNote(item)) {
notes.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public CodeableConcept getMethod() {
if (method == null) { method = new CodeableConcept(); }
return method;
}
public DkCoreObservation setMethod(CodeableConcept value) {
this.method = value;
return this;
}
public boolean hasMethod() {
return method != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public Reference getSpecimen() {
if (specimen == null) { specimen = new Reference(); }
return specimen;
}
public DkCoreObservation setSpecimen(Reference value) {
this.specimen = value;
return this;
}
public boolean hasSpecimen() {
return specimen != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public Reference getDevice() {
if (device == null) { device = new Reference(); }
return device;
}
public DkCoreObservation setDevice(Reference value) {
this.device = value;
return this;
}
public boolean hasDevice() {
return device != null;
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<BackboneElement> getReferenceRanges() {
if (referenceRanges == null) { referenceRanges = new ArrayList<>(); }
return referenceRanges;
}
public boolean hasReferenceRanges() {
return referenceRanges != null && !referenceRanges.isEmpty();
}
public boolean hasReferenceRange(BackboneElement item) {
return hasReferenceRanges() && referenceRanges.contains(item);
}
public void removeReferenceRange(BackboneElement item) {
if (hasReferenceRange(item)) {
referenceRanges.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Reference> getHasMembers() {
if (hasMembers == null) { hasMembers = new ArrayList<>(); }
return hasMembers;
}
public boolean hasHasMembers() {
return hasMembers != null && !hasMembers.isEmpty();
}
public Reference addHasMember() {
Reference theThing = new Reference();
getHasMembers().add(theThing);
return theThing;
}
public boolean hasHasMember(Reference item) {
return hasHasMembers() && hasMembers.contains(item);
}
public void removeHasMember(Reference item) {
if (hasHasMember(item)) {
hasMembers.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<Reference> getDerivedFroms() {
if (derivedFroms == null) { derivedFroms = new ArrayList<>(); }
return derivedFroms;
}
public boolean hasDerivedFroms() {
return derivedFroms != null && !derivedFroms.isEmpty();
}
public Reference addDerivedFrom() {
Reference theThing = new Reference();
getDerivedFroms().add(theThing);
return theThing;
}
public boolean hasDerivedFrom(Reference item) {
return hasDerivedFroms() && derivedFroms.contains(item);
}
public void removeDerivedFrom(Reference item) {
if (hasDerivedFrom(item)) {
derivedFroms.remove(item);
}
}
/**
* Measurements and simple assertions made about a patient, device or other
* subject.
*
*/
public List<BackboneElement> getComponents() {
if (components == null) { components = new ArrayList<>(); }
return components;
}
public boolean hasComponents() {
return components != null && !components.isEmpty();
}
public boolean hasComponent(BackboneElement item) {
return hasComponents() && components.contains(item);
}
public void removeComponent(BackboneElement item) {
if (hasComponent(item)) {
components.remove(item);
}
}
public void clear() {
id = null;
extensions.clear();
modifierExtensions.clear();
identifiers.clear();
basedOns.clear();
partOfs.clear();
status = null;
code = null;
subject = null;
focus.clear();
encounter = null;
performers.clear();
value = null;
dataAbsentReason = null;
notes.clear();
method = null;
specimen = null;
device = null;
referenceRanges.clear();
hasMembers.clear();
derivedFroms.clear();
components.clear();
}
}

771
org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/profiles/DkCoreOrganization.java Normal file
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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public class DkCoreOrganization extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-organization|3.2.0";
@Min("0") @Max("1") @Doco("")
private String id; //
@Min("0") @Max("*") @Doco("Additional content defined by implementations")
@Definition("May be used to represent additional information that is not part of the basic definition of the resource. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.")
private List<Extension> extensions = new ArrayList<>(); // Additional content defined by implementations
@Min("0") @Max("*") @Doco("Extensions that cannot be ignored")
@Definition("May be used to represent additional information that is not part of the basic definition of the resource and that modifies the understanding of the element that contains it and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).")
private List<Extension> modifierExtensions = new ArrayList<>(); // Extensions that cannot be ignored
@Min("1") @Max("*") @Doco("Identifies this organization across multiple systems")
@Definition("Identifier for the organization that is used to identify the organization across multiple disparate systems.")
private List<Identifier> identifiers = new ArrayList<>();// @NotNull // Identifies this organization across multiple systems
@Min("0") @Max("1") @Doco("GLN identifier, [DA] EAN-nummer")
@Definition("An identifier - identifies some entity uniquely and unambiguously. Typically this is used for business identifiers.")
private GLNIdentifier EANID; // GLN identifier, [DA] EAN-nummer
@Min("0") @Max("1") @Doco("[DA] SOR-id")
@Definition("An identifier - identifies some entity uniquely and unambiguously. Typically this is used for business identifiers.")
private SORIdentifier SORID; // [DA] SOR-id
@Min("0") @Max("1") @Doco("[DA] Organisationsenheds-id som specificeret af FK-ORG")
@Definition("An identifier - identifies some entity uniquely and unambiguously. Typically this is used for business identifiers.")
private KombitOrgIdentifier KOMBITORGID; // [DA] Organisationsenheds-id som specificeret af FK-ORG
@Min("0") @Max("1") @Doco("[DA] Ydernummer")
@Definition("Identifier for the organization that is used to identify the organization across multiple disparate systems.")
private Identifier Ydernummer; // [DA] Ydernummer
@Min("0") @Max("1") @Doco("VAT identification number, [DA] CVR-nummer")
@Definition("An identifier - identifies some entity uniquely and unambiguously. Typically this is used for business identifiers.")
private CVRIdentifier CVRID; // VAT identification number, [DA] CVR-nummer
@Min("0") @Max("1") @Doco("[DA] Kommunekode")
@Definition("Identifier for the organization that is used to identify the organization across multiple disparate systems.")
private Identifier Kommunekode; // [DA] Kommunekode
@Min("0") @Max("1") @Doco("[DA] Regionskode")
@Definition("Identifier for the organization that is used to identify the organization across multiple disparate systems.")
private Identifier Regionskode; // [DA] Regionskode
@Min("0") @Max("1") @Doco("[DA] Producent Id")
@Definition("An identifier - identifies some entity uniquely and unambiguously. Typically this is used for business identifiers.")
private ProducentId ProducentID; // [DA] Producent Id
@Min("0") @Max("1") @Doco("Name used for the organization")
@Definition("A name associated with the organization.")
private String name; // Name used for the organization
@Min("0") @Max("*") @Doco("A contact detail for the organization")
@Definition("A contact detail for the organization.")
private List<ContactPoint> telecoms = new ArrayList<>(); // A contact detail for the organization
@Min("0") @Max("*") @Doco("An address for the organization")
@Definition("An address for the organization.")
private List<Address> addresses = new ArrayList<>(); // An address for the organization
@Min("0") @Max("1") @Doco("The organization of which this organization forms a part")
@Definition("The organization of which this organization forms a part.")
private Reference partOf; // The organization of which this organization forms a part
@Min("0") @Max("*") @Doco("Contact for the organization for a certain purpose")
@Definition("Contact for the organization for a certain purpose.")
private List<BackboneElement> contacts = new ArrayList<>(); // Contact for the organization for a certain purpose
@Min("0") @Max("*") @Doco("Technical endpoints providing access to services operated for the organization")
@Definition("Technical endpoints providing access to services operated for the organization.")
private List<Reference> endpoints = new ArrayList<>(); // Technical endpoints providing access to services operated for the organization
/**
* Parameter-less constructor.
*
*/
public DkCoreOrganization() {
}
/**
* Construct an instance of the object, and fill out all the fixed values
*
*/
public DkCoreOrganization(IWorkerContext context) {
workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance src = builder.buildPEInstance(CANONICAL_URL, builder.createResource(CANONICAL_URL, false));
load(src);
}
/**
* Populate an instance of the object based on this source object
*
*/
public static DkCoreOrganization fromSource(IWorkerContext context, Organization source) {
DkCoreOrganization theThing = new DkCoreOrganization();
theThing.workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance src = builder.buildPEInstance(CANONICAL_URL, source);
theThing.load(src);
return theThing;
}
public void load(PEInstance src) {
clear();
if (src.hasChild("id")) {
id = ((IdType) src.child("id").asDataType()).getValue();
}
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
for (PEInstance item : src.children("modifierExtension")) {
modifierExtensions.add((Extension) item.asDataType());
}
for (PEInstance item : src.children("identifier")) {
identifiers.add((Identifier) item.asDataType());
}
if (src.hasChild("EANID")) {
EANID = GLNIdentifier.fromSource(src.child("EANID"));
}
if (src.hasChild("SORID")) {
SORID = SORIdentifier.fromSource(src.child("SORID"));
}
if (src.hasChild("KOMBITORGID")) {
KOMBITORGID = KombitOrgIdentifier.fromSource(src.child("KOMBITORGID"));
}
if (src.hasChild("Ydernummer")) {
Ydernummer = (Identifier) src.child("Ydernummer").asDataType();
}
if (src.hasChild("CVRID")) {
CVRID = CVRIdentifier.fromSource(src.child("CVRID"));
}
if (src.hasChild("Kommunekode")) {
Kommunekode = (Identifier) src.child("Kommunekode").asDataType();
}
if (src.hasChild("Regionskode")) {
Regionskode = (Identifier) src.child("Regionskode").asDataType();
}
if (src.hasChild("ProducentID")) {
ProducentID = ProducentId.fromSource(src.child("ProducentID"));
}
if (src.hasChild("name")) {
name = ((StringType) src.child("name").asDataType()).getValue();
}
for (PEInstance item : src.children("telecom")) {
telecoms.add((ContactPoint) item.asDataType());
}
for (PEInstance item : src.children("address")) {
addresses.add((Address) item.asDataType());
}
if (src.hasChild("partOf")) {
partOf = (Reference) src.child("partOf").asDataType();
}
for (PEInstance item : src.children("contact")) {
contacts.add((BackboneElement) item.asElement());
}
for (PEInstance item : src.children("endpoint")) {
endpoints.add((Reference) item.asDataType());
}
}
/**
* Build an instance of the object based on this source object
*
*/
public Organization build(IWorkerContext context) {
workerContext = context;
Organization theThing = new Organization();
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance tgt = builder.buildPEInstance(CANONICAL_URL, theThing);
save(tgt, false);
return theThing;
}
/**
* Save this profile class into an existing resource (overwriting anything that
* exists in the profile)
*
*/
public void save(IWorkerContext context, Organization dest, boolean nulls) {
workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance tgt = builder.buildPEInstance(CANONICAL_URL, dest);
save(tgt, nulls);
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("id");
if (id != null) {
tgt.makeChild("id").data().setProperty("value", new IdType(id));
}
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("modifierExtension");
for (Extension item : modifierExtensions) {
tgt.addChild("modifierExtension", item);
}
tgt.clear("identifier");
for (Identifier item : identifiers) {
tgt.addChild("identifier", item);
}
tgt.clear("EANID");
if (EANID != null) {
EANID.save(tgt.makeChild("EANID"), nulls);
}
tgt.clear("SORID");
if (SORID != null) {
SORID.save(tgt.makeChild("SORID"), nulls);
}
tgt.clear("KOMBITORGID");
if (KOMBITORGID != null) {
KOMBITORGID.save(tgt.makeChild("KOMBITORGID"), nulls);
}
tgt.clear("Ydernummer");
if (Ydernummer != null) {
tgt.addChild("Ydernummer", Ydernummer);
}
tgt.clear("CVRID");
if (CVRID != null) {
CVRID.save(tgt.makeChild("CVRID"), nulls);
}
tgt.clear("Kommunekode");
if (Kommunekode != null) {
tgt.addChild("Kommunekode", Kommunekode);
}
tgt.clear("Regionskode");
if (Regionskode != null) {
tgt.addChild("Regionskode", Regionskode);
}
tgt.clear("ProducentID");
if (ProducentID != null) {
ProducentID.save(tgt.makeChild("ProducentID"), nulls);
}
tgt.clear("name");
if (name != null) {
tgt.makeChild("name").data().setProperty("value", new StringType(name));
}
tgt.clear("telecom");
for (ContactPoint item : telecoms) {
tgt.addChild("telecom", item);
}
tgt.clear("address");
for (Address item : addresses) {
tgt.addChild("address", item);
}
tgt.clear("partOf");
if (partOf != null) {
tgt.addChild("partOf", partOf);
}
tgt.clear("contact");
for (BackboneElement item : contacts) {
tgt.addChild("contact", item);
}
tgt.clear("endpoint");
for (Reference item : endpoints) {
tgt.addChild("endpoint", item);
}
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public String getId() {
return id;
}
public DkCoreOrganization setId(String value) {
this.id = value;
return this;
}
public boolean hasId() {
return id != null;
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public List<Extension> getModifierExtensions() {
if (modifierExtensions == null) { modifierExtensions = new ArrayList<>(); }
return modifierExtensions;
}
public boolean hasModifierExtensions() {
return modifierExtensions != null && !modifierExtensions.isEmpty();
}
public Extension addModifierExtension() {
Extension theThing = new Extension();
getModifierExtensions().add(theThing);
return theThing;
}
public boolean hasModifierExtension(Extension item) {
return hasModifierExtensions() && modifierExtensions.contains(item);
}
public void removeModifierExtension(Extension item) {
if (hasModifierExtension(item)) {
modifierExtensions.remove(item);
}
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public List<Identifier> getIdentifiers() {
if (identifiers == null) { identifiers = new ArrayList<>(); }
return identifiers;
}
public boolean hasIdentifiers() {
return identifiers != null && !identifiers.isEmpty();
}
public Identifier addIdentifier() {
Identifier theThing = new Identifier();
getIdentifiers().add(theThing);
return theThing;
}
public boolean hasIdentifier(Identifier item) {
return hasIdentifiers() && identifiers.contains(item);
}
public void removeIdentifier(Identifier item) {
if (hasIdentifier(item)) {
identifiers.remove(item);
}
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public GLNIdentifier getEANID() {
if (EANID == null) { EANID = new GLNIdentifier(); }
return EANID;
}
public DkCoreOrganization setEANID(GLNIdentifier value) {
this.EANID = value;
return this;
}
public boolean hasEANID() {
return EANID != null;
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public SORIdentifier getSORID() {
if (SORID == null) { SORID = new SORIdentifier(); }
return SORID;
}
public DkCoreOrganization setSORID(SORIdentifier value) {
this.SORID = value;
return this;
}
public boolean hasSORID() {
return SORID != null;
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public KombitOrgIdentifier getKOMBITORGID() {
if (KOMBITORGID == null) { KOMBITORGID = new KombitOrgIdentifier(); }
return KOMBITORGID;
}
public DkCoreOrganization setKOMBITORGID(KombitOrgIdentifier value) {
this.KOMBITORGID = value;
return this;
}
public boolean hasKOMBITORGID() {
return KOMBITORGID != null;
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public Identifier getYdernummer() {
if (Ydernummer == null) { Ydernummer = new Identifier(); }
return Ydernummer;
}
public DkCoreOrganization setYdernummer(Identifier value) {
this.Ydernummer = value;
return this;
}
public boolean hasYdernummer() {
return Ydernummer != null;
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public CVRIdentifier getCVRID() {
if (CVRID == null) { CVRID = new CVRIdentifier(); }
return CVRID;
}
public DkCoreOrganization setCVRID(CVRIdentifier value) {
this.CVRID = value;
return this;
}
public boolean hasCVRID() {
return CVRID != null;
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public Identifier getKommunekode() {
if (Kommunekode == null) { Kommunekode = new Identifier(); }
return Kommunekode;
}
public DkCoreOrganization setKommunekode(Identifier value) {
this.Kommunekode = value;
return this;
}
public boolean hasKommunekode() {
return Kommunekode != null;
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public Identifier getRegionskode() {
if (Regionskode == null) { Regionskode = new Identifier(); }
return Regionskode;
}
public DkCoreOrganization setRegionskode(Identifier value) {
this.Regionskode = value;
return this;
}
public boolean hasRegionskode() {
return Regionskode != null;
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public ProducentId getProducentID() {
if (ProducentID == null) { ProducentID = new ProducentId(); }
return ProducentID;
}
public DkCoreOrganization setProducentID(ProducentId value) {
this.ProducentID = value;
return this;
}
public boolean hasProducentID() {
return ProducentID != null;
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public String getName() {
return name;
}
public DkCoreOrganization setName(String value) {
this.name = value;
return this;
}
public boolean hasName() {
return name != null;
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public List<ContactPoint> getTelecoms() {
if (telecoms == null) { telecoms = new ArrayList<>(); }
return telecoms;
}
public boolean hasTelecoms() {
return telecoms != null && !telecoms.isEmpty();
}
public ContactPoint addTelecom() {
ContactPoint theThing = new ContactPoint();
getTelecoms().add(theThing);
return theThing;
}
public boolean hasTelecom(ContactPoint item) {
return hasTelecoms() && telecoms.contains(item);
}
public void removeTelecom(ContactPoint item) {
if (hasTelecom(item)) {
telecoms.remove(item);
}
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public List<Address> getAddresses() {
if (addresses == null) { addresses = new ArrayList<>(); }
return addresses;
}
public boolean hasAddresses() {
return addresses != null && !addresses.isEmpty();
}
public Address addAddress() {
Address theThing = new Address();
getAddresses().add(theThing);
return theThing;
}
public boolean hasAddress(Address item) {
return hasAddresses() && addresses.contains(item);
}
public void removeAddress(Address item) {
if (hasAddress(item)) {
addresses.remove(item);
}
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public Reference getPartOf() {
if (partOf == null) { partOf = new Reference(); }
return partOf;
}
public DkCoreOrganization setPartOf(Reference value) {
this.partOf = value;
return this;
}
public boolean hasPartOf() {
return partOf != null;
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public List<BackboneElement> getContacts() {
if (contacts == null) { contacts = new ArrayList<>(); }
return contacts;
}
public boolean hasContacts() {
return contacts != null && !contacts.isEmpty();
}
public boolean hasContact(BackboneElement item) {
return hasContacts() && contacts.contains(item);
}
public void removeContact(BackboneElement item) {
if (hasContact(item)) {
contacts.remove(item);
}
}
/**
* A formally or informally recognized grouping of people or organizations formed
* for the purpose of achieving some form of collective action. Includes
* companies, institutions, corporations, departments, community groups, healthcare
* practice groups, payer/insurer, etc.
*
*/
public List<Reference> getEndpoints() {
if (endpoints == null) { endpoints = new ArrayList<>(); }
return endpoints;
}
public boolean hasEndpoints() {
return endpoints != null && !endpoints.isEmpty();
}
public Reference addEndpoint() {
Reference theThing = new Reference();
getEndpoints().add(theThing);
return theThing;
}
public boolean hasEndpoint(Reference item) {
return hasEndpoints() && endpoints.contains(item);
}
public void removeEndpoint(Reference item) {
if (hasEndpoint(item)) {
endpoints.remove(item);
}
}
public void clear() {
id = null;
extensions.clear();
modifierExtensions.clear();
identifiers.clear();
EANID = null;
SORID = null;
KOMBITORGID = null;
Ydernummer = null;
CVRID = null;
Kommunekode = null;
Regionskode = null;
ProducentID = null;
name = null;
telecoms.clear();
addresses.clear();
partOf = null;
contacts.clear();
endpoints.clear();
}
}

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org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/profiles/DkCorePatient.java Normal file
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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public class DkCorePatient extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-patient|3.2.0";
@Min("0") @Max("1") @Doco("")
private String id; //
@Min("0") @Max("*") @Doco("Additional content defined by implementations")
@Definition("May be used to represent additional information that is not part of the basic definition of the resource. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.")
private List<Extension> extensions = new ArrayList<>(); // Additional content defined by implementations
@Min("0") @Max("*") @Doco("Extensions that cannot be ignored")
@Definition("May be used to represent additional information that is not part of the basic definition of the resource and that modifies the understanding of the element that contains it and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).")
private List<Extension> modifierExtensions = new ArrayList<>(); // Extensions that cannot be ignored
@Min("1") @Max("*") @Doco("An identifier for this patient")
@Definition("An identifier for this patient.")
private List<Identifier> identifiers = new ArrayList<>();// @NotNull // An identifier for this patient
@Min("0") @Max("1") @Doco("[DA] cpr-nummer, som det fremgår af CPR registeret")
@Definition("An identifier - identifies some entity uniquely and unambiguously. Typically this is used for business identifiers.")
private DkCoreCprIdentifier cpr; // [DA] cpr-nummer, som det fremgår af CPR registeret
@Min("0") @Max("1") @Doco("[DA] X-eCPR, tildelt fra den nationale eCPR service")
@Definition("An identifier - identifies some entity uniquely and unambiguously. Typically this is used for business identifiers.")
private DkCoreXeCprIdentifier xEcpr; // [DA] X-eCPR, tildelt fra den nationale eCPR service
@Min("0") @Max("1") @Doco("[DA] D-eCPR, decentral eCPR")
@Definition("An identifier - identifies some entity uniquely and unambiguously. Typically this is used for business identifiers.")
private DkCoreDeCprIdentifier dEcpr; // [DA] D-eCPR, decentral eCPR
@Min("0") @Max("1") @Doco("[DA] Officielt navn, som det fremgår af CPR registeret")
@Definition("A name associated with the individual.")
private HumanName official; // [DA] Officielt navn, som det fremgår af CPR registeret
@Min("0") @Max("*") @Doco("A contact detail for the individual")
@Definition("A contact detail (e.g. a telephone number or an email address) by which the individual may be contacted.")
private List<ContactPoint> telecoms = new ArrayList<>(); // A contact detail for the individual
@Min("0") @Max("*") @Doco("An address for the individual")
@Definition("An address for the individual. Danish addresses must comply with directions issued by https://dawa.aws.dk/ and underlying authorities")
private List<Address> addresses = new ArrayList<>(); // An address for the individual
@Min("0") @Max("*") @Doco("Image of the patient")
@Definition("Image of the patient.")
private List<Attachment> photos = new ArrayList<>(); // Image of the patient
@Min("0") @Max("*") @Doco("A contact party (e.g. guardian, partner, friend) for the patient")
@Definition("A contact party (e.g. guardian, partner, friend) for the patient.")
private List<BackboneElement> contacts = new ArrayList<>(); // A contact party (e.g. guardian, partner, friend) for the patient
@Min("0") @Max("*") @Doco("A language which may be used to communicate with the patient about his or her health")
@Definition("A language which may be used to communicate with the patient about his or her health.")
private List<BackboneElement> communications = new ArrayList<>(); // A language which may be used to communicate with the patient about his or her health
@Min("0") @Max("*") @Doco("Patient's nominated primary care provider")
@Definition("Patient's nominated care provider.")
private List<Reference> generalPractitioners = new ArrayList<>(); // Patient's nominated primary care provider
@Min("0") @Max("*") @Doco("[DA] Praktiserende læges SOR-id på sundhedsinstistutionsniveau")
@Definition("Patient's nominated care provider.")
private List<Reference> referencedSORUnits = new ArrayList<>(); // [DA] Praktiserende læges SOR-id på sundhedsinstistutionsniveau
@Min("0") @Max("1") @Doco("Organization that is the custodian of the patient record")
@Definition("Organization that is the custodian of the patient record.")
private Reference managingOrganization; // Organization that is the custodian of the patient record
@Min("0") @Max("*") @Doco("Link to another patient resource that concerns the same actual person")
@Definition("Link to another patient resource that concerns the same actual patient.")
private List<BackboneElement> links = new ArrayList<>(); // Link to another patient resource that concerns the same actual person
/**
* Parameter-less constructor.
*
*/
public DkCorePatient() {
}
/**
* Construct an instance of the object, and fill out all the fixed values
*
*/
public DkCorePatient(IWorkerContext context) {
workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance src = builder.buildPEInstance(CANONICAL_URL, builder.createResource(CANONICAL_URL, false));
load(src);
}
/**
* Populate an instance of the object based on this source object
*
*/
public static DkCorePatient fromSource(IWorkerContext context, Patient source) {
DkCorePatient theThing = new DkCorePatient();
theThing.workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance src = builder.buildPEInstance(CANONICAL_URL, source);
theThing.load(src);
return theThing;
}
public void load(PEInstance src) {
clear();
if (src.hasChild("id")) {
id = ((IdType) src.child("id").asDataType()).getValue();
}
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
for (PEInstance item : src.children("modifierExtension")) {
modifierExtensions.add((Extension) item.asDataType());
}
for (PEInstance item : src.children("identifier")) {
identifiers.add((Identifier) item.asDataType());
}
if (src.hasChild("cpr")) {
cpr = DkCoreCprIdentifier.fromSource(src.child("cpr"));
}
if (src.hasChild("xEcpr")) {
xEcpr = DkCoreXeCprIdentifier.fromSource(src.child("xEcpr"));
}
if (src.hasChild("dEcpr")) {
dEcpr = DkCoreDeCprIdentifier.fromSource(src.child("dEcpr"));
}
if (src.hasChild("official")) {
official = (HumanName) src.child("official").asDataType();
}
for (PEInstance item : src.children("telecom")) {
telecoms.add((ContactPoint) item.asDataType());
}
for (PEInstance item : src.children("address")) {
addresses.add((Address) item.asDataType());
}
for (PEInstance item : src.children("photo")) {
photos.add((Attachment) item.asDataType());
}
for (PEInstance item : src.children("contact")) {
contacts.add((BackboneElement) item.asElement());
}
for (PEInstance item : src.children("communication")) {
communications.add((BackboneElement) item.asElement());
}
for (PEInstance item : src.children("generalPractitioner")) {
generalPractitioners.add((Reference) item.asDataType());
}
for (PEInstance item : src.children("referencedSORUnit")) {
referencedSORUnits.add((Reference) item.asDataType());
}
if (src.hasChild("managingOrganization")) {
managingOrganization = (Reference) src.child("managingOrganization").asDataType();
}
for (PEInstance item : src.children("link")) {
links.add((BackboneElement) item.asElement());
}
}
/**
* Build an instance of the object based on this source object
*
*/
public Patient build(IWorkerContext context) {
workerContext = context;
Patient theThing = new Patient();
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance tgt = builder.buildPEInstance(CANONICAL_URL, theThing);
save(tgt, false);
return theThing;
}
/**
* Save this profile class into an existing resource (overwriting anything that
* exists in the profile)
*
*/
public void save(IWorkerContext context, Patient dest, boolean nulls) {
workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance tgt = builder.buildPEInstance(CANONICAL_URL, dest);
save(tgt, nulls);
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("id");
if (id != null) {
tgt.makeChild("id").data().setProperty("value", new IdType(id));
}
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("modifierExtension");
for (Extension item : modifierExtensions) {
tgt.addChild("modifierExtension", item);
}
tgt.clear("identifier");
for (Identifier item : identifiers) {
tgt.addChild("identifier", item);
}
tgt.clear("cpr");
if (cpr != null) {
cpr.save(tgt.makeChild("cpr"), nulls);
}
tgt.clear("xEcpr");
if (xEcpr != null) {
xEcpr.save(tgt.makeChild("xEcpr"), nulls);
}
tgt.clear("dEcpr");
if (dEcpr != null) {
dEcpr.save(tgt.makeChild("dEcpr"), nulls);
}
tgt.clear("official");
if (official != null) {
tgt.addChild("official", official);
}
tgt.clear("telecom");
for (ContactPoint item : telecoms) {
tgt.addChild("telecom", item);
}
tgt.clear("address");
for (Address item : addresses) {
tgt.addChild("address", item);
}
tgt.clear("photo");
for (Attachment item : photos) {
tgt.addChild("photo", item);
}
tgt.clear("contact");
for (BackboneElement item : contacts) {
tgt.addChild("contact", item);
}
tgt.clear("communication");
for (BackboneElement item : communications) {
tgt.addChild("communication", item);
}
tgt.clear("generalPractitioner");
for (Reference item : generalPractitioners) {
tgt.addChild("generalPractitioner", item);
}
tgt.clear("referencedSORUnit");
for (Reference item : referencedSORUnits) {
tgt.addChild("referencedSORUnit", item);
}
tgt.clear("managingOrganization");
if (managingOrganization != null) {
tgt.addChild("managingOrganization", managingOrganization);
}
tgt.clear("link");
for (BackboneElement item : links) {
tgt.addChild("link", item);
}
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public String getId() {
return id;
}
public DkCorePatient setId(String value) {
this.id = value;
return this;
}
public boolean hasId() {
return id != null;
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public List<Extension> getModifierExtensions() {
if (modifierExtensions == null) { modifierExtensions = new ArrayList<>(); }
return modifierExtensions;
}
public boolean hasModifierExtensions() {
return modifierExtensions != null && !modifierExtensions.isEmpty();
}
public Extension addModifierExtension() {
Extension theThing = new Extension();
getModifierExtensions().add(theThing);
return theThing;
}
public boolean hasModifierExtension(Extension item) {
return hasModifierExtensions() && modifierExtensions.contains(item);
}
public void removeModifierExtension(Extension item) {
if (hasModifierExtension(item)) {
modifierExtensions.remove(item);
}
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public List<Identifier> getIdentifiers() {
if (identifiers == null) { identifiers = new ArrayList<>(); }
return identifiers;
}
public boolean hasIdentifiers() {
return identifiers != null && !identifiers.isEmpty();
}
public Identifier addIdentifier() {
Identifier theThing = new Identifier();
getIdentifiers().add(theThing);
return theThing;
}
public boolean hasIdentifier(Identifier item) {
return hasIdentifiers() && identifiers.contains(item);
}
public void removeIdentifier(Identifier item) {
if (hasIdentifier(item)) {
identifiers.remove(item);
}
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public DkCoreCprIdentifier getCpr() {
if (cpr == null) { cpr = new DkCoreCprIdentifier(); }
return cpr;
}
public DkCorePatient setCpr(DkCoreCprIdentifier value) {
this.cpr = value;
return this;
}
public boolean hasCpr() {
return cpr != null;
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public DkCoreXeCprIdentifier getXEcpr() {
if (xEcpr == null) { xEcpr = new DkCoreXeCprIdentifier(); }
return xEcpr;
}
public DkCorePatient setXEcpr(DkCoreXeCprIdentifier value) {
this.xEcpr = value;
return this;
}
public boolean hasXEcpr() {
return xEcpr != null;
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public DkCoreDeCprIdentifier getDEcpr() {
if (dEcpr == null) { dEcpr = new DkCoreDeCprIdentifier(); }
return dEcpr;
}
public DkCorePatient setDEcpr(DkCoreDeCprIdentifier value) {
this.dEcpr = value;
return this;
}
public boolean hasDEcpr() {
return dEcpr != null;
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public HumanName getOfficial() {
if (official == null) { official = new HumanName(); }
return official;
}
public DkCorePatient setOfficial(HumanName value) {
this.official = value;
return this;
}
public boolean hasOfficial() {
return official != null;
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public List<ContactPoint> getTelecoms() {
if (telecoms == null) { telecoms = new ArrayList<>(); }
return telecoms;
}
public boolean hasTelecoms() {
return telecoms != null && !telecoms.isEmpty();
}
public ContactPoint addTelecom() {
ContactPoint theThing = new ContactPoint();
getTelecoms().add(theThing);
return theThing;
}
public boolean hasTelecom(ContactPoint item) {
return hasTelecoms() && telecoms.contains(item);
}
public void removeTelecom(ContactPoint item) {
if (hasTelecom(item)) {
telecoms.remove(item);
}
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public List<Address> getAddresses() {
if (addresses == null) { addresses = new ArrayList<>(); }
return addresses;
}
public boolean hasAddresses() {
return addresses != null && !addresses.isEmpty();
}
public Address addAddress() {
Address theThing = new Address();
getAddresses().add(theThing);
return theThing;
}
public boolean hasAddress(Address item) {
return hasAddresses() && addresses.contains(item);
}
public void removeAddress(Address item) {
if (hasAddress(item)) {
addresses.remove(item);
}
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public List<Attachment> getPhotos() {
if (photos == null) { photos = new ArrayList<>(); }
return photos;
}
public boolean hasPhotos() {
return photos != null && !photos.isEmpty();
}
public Attachment addPhoto() {
Attachment theThing = new Attachment();
getPhotos().add(theThing);
return theThing;
}
public boolean hasPhoto(Attachment item) {
return hasPhotos() && photos.contains(item);
}
public void removePhoto(Attachment item) {
if (hasPhoto(item)) {
photos.remove(item);
}
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public List<BackboneElement> getContacts() {
if (contacts == null) { contacts = new ArrayList<>(); }
return contacts;
}
public boolean hasContacts() {
return contacts != null && !contacts.isEmpty();
}
public boolean hasContact(BackboneElement item) {
return hasContacts() && contacts.contains(item);
}
public void removeContact(BackboneElement item) {
if (hasContact(item)) {
contacts.remove(item);
}
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public List<BackboneElement> getCommunications() {
if (communications == null) { communications = new ArrayList<>(); }
return communications;
}
public boolean hasCommunications() {
return communications != null && !communications.isEmpty();
}
public boolean hasCommunication(BackboneElement item) {
return hasCommunications() && communications.contains(item);
}
public void removeCommunication(BackboneElement item) {
if (hasCommunication(item)) {
communications.remove(item);
}
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public List<Reference> getGeneralPractitioners() {
if (generalPractitioners == null) { generalPractitioners = new ArrayList<>(); }
return generalPractitioners;
}
public boolean hasGeneralPractitioners() {
return generalPractitioners != null && !generalPractitioners.isEmpty();
}
public Reference addGeneralPractitioner() {
Reference theThing = new Reference();
getGeneralPractitioners().add(theThing);
return theThing;
}
public boolean hasGeneralPractitioner(Reference item) {
return hasGeneralPractitioners() && generalPractitioners.contains(item);
}
public void removeGeneralPractitioner(Reference item) {
if (hasGeneralPractitioner(item)) {
generalPractitioners.remove(item);
}
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public List<Reference> getReferencedSORUnits() {
if (referencedSORUnits == null) { referencedSORUnits = new ArrayList<>(); }
return referencedSORUnits;
}
public boolean hasReferencedSORUnits() {
return referencedSORUnits != null && !referencedSORUnits.isEmpty();
}
public Reference addReferencedSORUnit() {
Reference theThing = new Reference();
getReferencedSORUnits().add(theThing);
return theThing;
}
public boolean hasReferencedSORUnit(Reference item) {
return hasReferencedSORUnits() && referencedSORUnits.contains(item);
}
public void removeReferencedSORUnit(Reference item) {
if (hasReferencedSORUnit(item)) {
referencedSORUnits.remove(item);
}
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public Reference getManagingOrganization() {
if (managingOrganization == null) { managingOrganization = new Reference(); }
return managingOrganization;
}
public DkCorePatient setManagingOrganization(Reference value) {
this.managingOrganization = value;
return this;
}
public boolean hasManagingOrganization() {
return managingOrganization != null;
}
/**
* Demographics and other administrative information about an individual or animal
* receiving care or other health-related services.
*
*/
public List<BackboneElement> getLinks() {
if (links == null) { links = new ArrayList<>(); }
return links;
}
public boolean hasLinks() {
return links != null && !links.isEmpty();
}
public boolean hasLink(BackboneElement item) {
return hasLinks() && links.contains(item);
}
public void removeLink(BackboneElement item) {
if (hasLink(item)) {
links.remove(item);
}
}
public void clear() {
id = null;
extensions.clear();
modifierExtensions.clear();
identifiers.clear();
cpr = null;
xEcpr = null;
dEcpr = null;
official = null;
telecoms.clear();
addresses.clear();
photos.clear();
contacts.clear();
communications.clear();
generalPractitioners.clear();
referencedSORUnits.clear();
managingOrganization = null;
links.clear();
}
}

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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* A person who is directly or indirectly involved in the provisioning of
* healthcare.
*
*/
public class DkCorePractitioner extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-practitioner|3.2.0";
@Min("0") @Max("1") @Doco("")
private String id; //
@Min("0") @Max("*") @Doco("Additional content defined by implementations")
@Definition("May be used to represent additional information that is not part of the basic definition of the resource. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.")
private List<Extension> extensions = new ArrayList<>(); // Additional content defined by implementations
@Min("0") @Max("*") @Doco("Extensions that cannot be ignored")
@Definition("May be used to represent additional information that is not part of the basic definition of the resource and that modifies the understanding of the element that contains it and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).")
private List<Extension> modifierExtensions = new ArrayList<>(); // Extensions that cannot be ignored
@Min("0") @Max("*") @Doco("An identifier for the person as this agent")
@Definition("An identifier that applies to this person in this role.")
private List<Identifier> identifiers = new ArrayList<>(); // An identifier for the person as this agent
@Min("0") @Max("*") @Doco("A contact detail for the practitioner (that apply to all roles)")
@Definition("A contact detail for the practitioner, e.g. a telephone number or an email address.")
private List<ContactPoint> telecoms = new ArrayList<>(); // A contact detail for the practitioner (that apply to all roles)
@Min("0") @Max("*") @Doco("Image of the person")
@Definition("Image of the person.")
private List<Attachment> photos = new ArrayList<>(); // Image of the person
@Min("0") @Max("*") @Doco("Certification, licenses, or training pertaining to the provision of care")
@Definition("The official certifications, training, and licenses that authorize or otherwise pertain to the provision of care by the practitioner. For example, a medical license issued by a medical board authorizing the practitioner to practice medicine within a certian locality.")
private List<BackboneElement> qualifications = new ArrayList<>(); // Certification, licenses, or training pertaining to the provision of care
@Min("0") @Max("1") @Doco("Certification, licenses, or training pertaining to the provision of care")
@Definition("The official certifications, training, and licenses that authorize or otherwise pertain to the provision of care by the practitioner. For example, a medical license issued by a medical board authorizing the practitioner to practice medicine within a certian locality.")
private BackboneElement officialHealthAuthorization; // Certification, licenses, or training pertaining to the provision of care
/**
* Parameter-less constructor.
*
*/
public DkCorePractitioner() {
}
/**
* Construct an instance of the object, and fill out all the fixed values
*
*/
public DkCorePractitioner(IWorkerContext context) {
workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance src = builder.buildPEInstance(CANONICAL_URL, builder.createResource(CANONICAL_URL, false));
load(src);
}
/**
* Populate an instance of the object based on this source object
*
*/
public static DkCorePractitioner fromSource(IWorkerContext context, Practitioner source) {
DkCorePractitioner theThing = new DkCorePractitioner();
theThing.workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance src = builder.buildPEInstance(CANONICAL_URL, source);
theThing.load(src);
return theThing;
}
public void load(PEInstance src) {
clear();
if (src.hasChild("id")) {
id = ((IdType) src.child("id").asDataType()).getValue();
}
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
for (PEInstance item : src.children("modifierExtension")) {
modifierExtensions.add((Extension) item.asDataType());
}
for (PEInstance item : src.children("identifier")) {
identifiers.add((Identifier) item.asDataType());
}
for (PEInstance item : src.children("telecom")) {
telecoms.add((ContactPoint) item.asDataType());
}
for (PEInstance item : src.children("photo")) {
photos.add((Attachment) item.asDataType());
}
for (PEInstance item : src.children("qualification")) {
qualifications.add((BackboneElement) item.asElement());
}
if (src.hasChild("officialHealthAuthorization")) {
officialHealthAuthorization = (BackboneElement) src.child("officialHealthAuthorization").asElement();
}
}
/**
* Build an instance of the object based on this source object
*
*/
public Practitioner build(IWorkerContext context) {
workerContext = context;
Practitioner theThing = new Practitioner();
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance tgt = builder.buildPEInstance(CANONICAL_URL, theThing);
save(tgt, false);
return theThing;
}
/**
* Save this profile class into an existing resource (overwriting anything that
* exists in the profile)
*
*/
public void save(IWorkerContext context, Practitioner dest, boolean nulls) {
workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance tgt = builder.buildPEInstance(CANONICAL_URL, dest);
save(tgt, nulls);
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("id");
if (id != null) {
tgt.makeChild("id").data().setProperty("value", new IdType(id));
}
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("modifierExtension");
for (Extension item : modifierExtensions) {
tgt.addChild("modifierExtension", item);
}
tgt.clear("identifier");
for (Identifier item : identifiers) {
tgt.addChild("identifier", item);
}
tgt.clear("telecom");
for (ContactPoint item : telecoms) {
tgt.addChild("telecom", item);
}
tgt.clear("photo");
for (Attachment item : photos) {
tgt.addChild("photo", item);
}
tgt.clear("qualification");
for (BackboneElement item : qualifications) {
tgt.addChild("qualification", item);
}
tgt.clear("officialHealthAuthorization");
if (officialHealthAuthorization != null) {
tgt.addChild("officialHealthAuthorization", officialHealthAuthorization);
}
}
/**
* A person who is directly or indirectly involved in the provisioning of
* healthcare.
*
*/
public String getId() {
return id;
}
public DkCorePractitioner setId(String value) {
this.id = value;
return this;
}
public boolean hasId() {
return id != null;
}
/**
* A person who is directly or indirectly involved in the provisioning of
* healthcare.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* A person who is directly or indirectly involved in the provisioning of
* healthcare.
*
*/
public List<Extension> getModifierExtensions() {
if (modifierExtensions == null) { modifierExtensions = new ArrayList<>(); }
return modifierExtensions;
}
public boolean hasModifierExtensions() {
return modifierExtensions != null && !modifierExtensions.isEmpty();
}
public Extension addModifierExtension() {
Extension theThing = new Extension();
getModifierExtensions().add(theThing);
return theThing;
}
public boolean hasModifierExtension(Extension item) {
return hasModifierExtensions() && modifierExtensions.contains(item);
}
public void removeModifierExtension(Extension item) {
if (hasModifierExtension(item)) {
modifierExtensions.remove(item);
}
}
/**
* A person who is directly or indirectly involved in the provisioning of
* healthcare.
*
*/
public List<Identifier> getIdentifiers() {
if (identifiers == null) { identifiers = new ArrayList<>(); }
return identifiers;
}
public boolean hasIdentifiers() {
return identifiers != null && !identifiers.isEmpty();
}
public Identifier addIdentifier() {
Identifier theThing = new Identifier();
getIdentifiers().add(theThing);
return theThing;
}
public boolean hasIdentifier(Identifier item) {
return hasIdentifiers() && identifiers.contains(item);
}
public void removeIdentifier(Identifier item) {
if (hasIdentifier(item)) {
identifiers.remove(item);
}
}
/**
* A person who is directly or indirectly involved in the provisioning of
* healthcare.
*
*/
public List<ContactPoint> getTelecoms() {
if (telecoms == null) { telecoms = new ArrayList<>(); }
return telecoms;
}
public boolean hasTelecoms() {
return telecoms != null && !telecoms.isEmpty();
}
public ContactPoint addTelecom() {
ContactPoint theThing = new ContactPoint();
getTelecoms().add(theThing);
return theThing;
}
public boolean hasTelecom(ContactPoint item) {
return hasTelecoms() && telecoms.contains(item);
}
public void removeTelecom(ContactPoint item) {
if (hasTelecom(item)) {
telecoms.remove(item);
}
}
/**
* A person who is directly or indirectly involved in the provisioning of
* healthcare.
*
*/
public List<Attachment> getPhotos() {
if (photos == null) { photos = new ArrayList<>(); }
return photos;
}
public boolean hasPhotos() {
return photos != null && !photos.isEmpty();
}
public Attachment addPhoto() {
Attachment theThing = new Attachment();
getPhotos().add(theThing);
return theThing;
}
public boolean hasPhoto(Attachment item) {
return hasPhotos() && photos.contains(item);
}
public void removePhoto(Attachment item) {
if (hasPhoto(item)) {
photos.remove(item);
}
}
/**
* A person who is directly or indirectly involved in the provisioning of
* healthcare.
*
*/
public List<BackboneElement> getQualifications() {
if (qualifications == null) { qualifications = new ArrayList<>(); }
return qualifications;
}
public boolean hasQualifications() {
return qualifications != null && !qualifications.isEmpty();
}
public boolean hasQualification(BackboneElement item) {
return hasQualifications() && qualifications.contains(item);
}
public void removeQualification(BackboneElement item) {
if (hasQualification(item)) {
qualifications.remove(item);
}
}
/**
* A person who is directly or indirectly involved in the provisioning of
* healthcare.
*
*/
public @Nullable BackboneElement getOfficialHealthAuthorization() { // BackboneElement is abstract
return officialHealthAuthorization;
}
public DkCorePractitioner setOfficialHealthAuthorization(BackboneElement value) {
this.officialHealthAuthorization = value;
return this;
}
public boolean hasOfficialHealthAuthorization() {
return officialHealthAuthorization != null;
}
public void clear() {
id = null;
extensions.clear();
modifierExtensions.clear();
identifiers.clear();
telecoms.clear();
photos.clear();
qualifications.clear();
officialHealthAuthorization = null;
}
}

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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* Information about a person that is involved in the care for a patient, but who
* is not the target of healthcare, nor has a formal responsibility in the care
* process.
*
*/
public class DkCoreRelatedPerson extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-related-person|3.2.0";
@Min("0") @Max("1") @Doco("")
private String id; //
@Min("0") @Max("*") @Doco("Additional content defined by implementations")
@Definition("May be used to represent additional information that is not part of the basic definition of the resource. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.")
private List<Extension> extensions = new ArrayList<>(); // Additional content defined by implementations
@Min("0") @Max("*") @Doco("Extensions that cannot be ignored")
@Definition("May be used to represent additional information that is not part of the basic definition of the resource and that modifies the understanding of the element that contains it and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).")
private List<Extension> modifierExtensions = new ArrayList<>(); // Extensions that cannot be ignored
@Min("0") @Max("*") @Doco("A human identifier for this person")
@Definition("Identifier for a person within a particular scope.")
private List<Identifier> identifiers = new ArrayList<>(); // A human identifier for this person
@Min("0") @Max("1") @Doco("[DA] cpr-nummer, som det fremgår af CPR registeret")
@Definition("An identifier - identifies some entity uniquely and unambiguously. Typically this is used for business identifiers.")
private DkCoreCprIdentifier cpr; // [DA] cpr-nummer, som det fremgår af CPR registeret
@Min("0") @Max("1") @Doco("[DA] X-eCPR, tildelt fra den nationale eCPR service")
@Definition("An identifier - identifies some entity uniquely and unambiguously. Typically this is used for business identifiers.")
private DkCoreXeCprIdentifier xEcpr; // [DA] X-eCPR, tildelt fra den nationale eCPR service
@Min("0") @Max("1") @Doco("[DA] D-eCPR, decentral eCPR")
@Definition("An identifier - identifies some entity uniquely and unambiguously. Typically this is used for business identifiers.")
private DkCoreDeCprIdentifier dEcpr; // [DA] D-eCPR, decentral eCPR
@Min("1") @Max("1") @Doco("The patient this person is related to")
@Definition("The patient this person is related to.")
private Reference patient;// @NotNull // The patient this person is related to
@Min("0") @Max("1") @Doco("[DA] Officielt navn, som det fremgår af CPR registeret")
@Definition("A name associated with the person.")
private HumanName official; // [DA] Officielt navn, som det fremgår af CPR registeret
@Min("0") @Max("*") @Doco("A contact detail for the person")
@Definition("A contact detail for the person, e.g. a telephone number or an email address.")
private List<ContactPoint> telecoms = new ArrayList<>(); // A contact detail for the person
@Min("0") @Max("*") @Doco("Image of the person")
@Definition("Image of the person.")
private List<Attachment> photos = new ArrayList<>(); // Image of the person
@Min("0") @Max("1") @Doco("Period of time that this relationship is considered valid")
@Definition("The period of time during which this relationship is or was active. If there are no dates defined, then the interval is unknown.")
private Period period; // Period of time that this relationship is considered valid
@Min("0") @Max("*") @Doco("A language which may be used to communicate with about the patient's health")
@Definition("A language which may be used to communicate with about the patient's health.")
private List<BackboneElement> communications = new ArrayList<>(); // A language which may be used to communicate with about the patient's health
/**
* Parameter-less constructor.
*
*/
public DkCoreRelatedPerson() {
}
/**
* Construct an instance of the object, and fill out all the fixed values
*
*/
public DkCoreRelatedPerson(IWorkerContext context) {
workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance src = builder.buildPEInstance(CANONICAL_URL, builder.createResource(CANONICAL_URL, false));
load(src);
}
/**
* Populate an instance of the object based on this source object
*
*/
public static DkCoreRelatedPerson fromSource(IWorkerContext context, RelatedPerson source) {
DkCoreRelatedPerson theThing = new DkCoreRelatedPerson();
theThing.workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance src = builder.buildPEInstance(CANONICAL_URL, source);
theThing.load(src);
return theThing;
}
public void load(PEInstance src) {
clear();
if (src.hasChild("id")) {
id = ((IdType) src.child("id").asDataType()).getValue();
}
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
for (PEInstance item : src.children("modifierExtension")) {
modifierExtensions.add((Extension) item.asDataType());
}
for (PEInstance item : src.children("identifier")) {
identifiers.add((Identifier) item.asDataType());
}
if (src.hasChild("cpr")) {
cpr = DkCoreCprIdentifier.fromSource(src.child("cpr"));
}
if (src.hasChild("xEcpr")) {
xEcpr = DkCoreXeCprIdentifier.fromSource(src.child("xEcpr"));
}
if (src.hasChild("dEcpr")) {
dEcpr = DkCoreDeCprIdentifier.fromSource(src.child("dEcpr"));
}
if (src.hasChild("patient")) {
patient = (Reference) src.child("patient").asDataType();
}
if (src.hasChild("official")) {
official = (HumanName) src.child("official").asDataType();
}
for (PEInstance item : src.children("telecom")) {
telecoms.add((ContactPoint) item.asDataType());
}
for (PEInstance item : src.children("photo")) {
photos.add((Attachment) item.asDataType());
}
if (src.hasChild("period")) {
period = (Period) src.child("period").asDataType();
}
for (PEInstance item : src.children("communication")) {
communications.add((BackboneElement) item.asElement());
}
}
/**
* Build an instance of the object based on this source object
*
*/
public RelatedPerson build(IWorkerContext context) {
workerContext = context;
RelatedPerson theThing = new RelatedPerson();
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance tgt = builder.buildPEInstance(CANONICAL_URL, theThing);
save(tgt, false);
return theThing;
}
/**
* Save this profile class into an existing resource (overwriting anything that
* exists in the profile)
*
*/
public void save(IWorkerContext context, RelatedPerson dest, boolean nulls) {
workerContext = context;
PEBuilder builder = new PEBuilder(context, PEElementPropertiesPolicy.EXTENSION, true);
PEInstance tgt = builder.buildPEInstance(CANONICAL_URL, dest);
save(tgt, nulls);
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("id");
if (id != null) {
tgt.makeChild("id").data().setProperty("value", new IdType(id));
}
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("modifierExtension");
for (Extension item : modifierExtensions) {
tgt.addChild("modifierExtension", item);
}
tgt.clear("identifier");
for (Identifier item : identifiers) {
tgt.addChild("identifier", item);
}
tgt.clear("cpr");
if (cpr != null) {
cpr.save(tgt.makeChild("cpr"), nulls);
}
tgt.clear("xEcpr");
if (xEcpr != null) {
xEcpr.save(tgt.makeChild("xEcpr"), nulls);
}
tgt.clear("dEcpr");
if (dEcpr != null) {
dEcpr.save(tgt.makeChild("dEcpr"), nulls);
}
tgt.clear("patient");
if (patient != null) {
tgt.addChild("patient", patient);
}
tgt.clear("official");
if (official != null) {
tgt.addChild("official", official);
}
tgt.clear("telecom");
for (ContactPoint item : telecoms) {
tgt.addChild("telecom", item);
}
tgt.clear("photo");
for (Attachment item : photos) {
tgt.addChild("photo", item);
}
tgt.clear("period");
if (period != null) {
tgt.addChild("period", period);
}
tgt.clear("communication");
for (BackboneElement item : communications) {
tgt.addChild("communication", item);
}
}
/**
* Information about a person that is involved in the care for a patient, but who
* is not the target of healthcare, nor has a formal responsibility in the care
* process.
*
*/
public String getId() {
return id;
}
public DkCoreRelatedPerson setId(String value) {
this.id = value;
return this;
}
public boolean hasId() {
return id != null;
}
/**
* Information about a person that is involved in the care for a patient, but who
* is not the target of healthcare, nor has a formal responsibility in the care
* process.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* Information about a person that is involved in the care for a patient, but who
* is not the target of healthcare, nor has a formal responsibility in the care
* process.
*
*/
public List<Extension> getModifierExtensions() {
if (modifierExtensions == null) { modifierExtensions = new ArrayList<>(); }
return modifierExtensions;
}
public boolean hasModifierExtensions() {
return modifierExtensions != null && !modifierExtensions.isEmpty();
}
public Extension addModifierExtension() {
Extension theThing = new Extension();
getModifierExtensions().add(theThing);
return theThing;
}
public boolean hasModifierExtension(Extension item) {
return hasModifierExtensions() && modifierExtensions.contains(item);
}
public void removeModifierExtension(Extension item) {
if (hasModifierExtension(item)) {
modifierExtensions.remove(item);
}
}
/**
* Information about a person that is involved in the care for a patient, but who
* is not the target of healthcare, nor has a formal responsibility in the care
* process.
*
*/
public List<Identifier> getIdentifiers() {
if (identifiers == null) { identifiers = new ArrayList<>(); }
return identifiers;
}
public boolean hasIdentifiers() {
return identifiers != null && !identifiers.isEmpty();
}
public Identifier addIdentifier() {
Identifier theThing = new Identifier();
getIdentifiers().add(theThing);
return theThing;
}
public boolean hasIdentifier(Identifier item) {
return hasIdentifiers() && identifiers.contains(item);
}
public void removeIdentifier(Identifier item) {
if (hasIdentifier(item)) {
identifiers.remove(item);
}
}
/**
* Information about a person that is involved in the care for a patient, but who
* is not the target of healthcare, nor has a formal responsibility in the care
* process.
*
*/
public DkCoreCprIdentifier getCpr() {
if (cpr == null) { cpr = new DkCoreCprIdentifier(); }
return cpr;
}
public DkCoreRelatedPerson setCpr(DkCoreCprIdentifier value) {
this.cpr = value;
return this;
}
public boolean hasCpr() {
return cpr != null;
}
/**
* Information about a person that is involved in the care for a patient, but who
* is not the target of healthcare, nor has a formal responsibility in the care
* process.
*
*/
public DkCoreXeCprIdentifier getXEcpr() {
if (xEcpr == null) { xEcpr = new DkCoreXeCprIdentifier(); }
return xEcpr;
}
public DkCoreRelatedPerson setXEcpr(DkCoreXeCprIdentifier value) {
this.xEcpr = value;
return this;
}
public boolean hasXEcpr() {
return xEcpr != null;
}
/**
* Information about a person that is involved in the care for a patient, but who
* is not the target of healthcare, nor has a formal responsibility in the care
* process.
*
*/
public DkCoreDeCprIdentifier getDEcpr() {
if (dEcpr == null) { dEcpr = new DkCoreDeCprIdentifier(); }
return dEcpr;
}
public DkCoreRelatedPerson setDEcpr(DkCoreDeCprIdentifier value) {
this.dEcpr = value;
return this;
}
public boolean hasDEcpr() {
return dEcpr != null;
}
/**
* Information about a person that is involved in the care for a patient, but who
* is not the target of healthcare, nor has a formal responsibility in the care
* process.
*
*/
public Reference getPatient() {
if (patient == null) { patient = new Reference(); }
return patient;
}
public DkCoreRelatedPerson setPatient(Reference value) {
this.patient = value;
return this;
}
public boolean hasPatient() {
return patient != null;
}
/**
* Information about a person that is involved in the care for a patient, but who
* is not the target of healthcare, nor has a formal responsibility in the care
* process.
*
*/
public HumanName getOfficial() {
if (official == null) { official = new HumanName(); }
return official;
}
public DkCoreRelatedPerson setOfficial(HumanName value) {
this.official = value;
return this;
}
public boolean hasOfficial() {
return official != null;
}
/**
* Information about a person that is involved in the care for a patient, but who
* is not the target of healthcare, nor has a formal responsibility in the care
* process.
*
*/
public List<ContactPoint> getTelecoms() {
if (telecoms == null) { telecoms = new ArrayList<>(); }
return telecoms;
}
public boolean hasTelecoms() {
return telecoms != null && !telecoms.isEmpty();
}
public ContactPoint addTelecom() {
ContactPoint theThing = new ContactPoint();
getTelecoms().add(theThing);
return theThing;
}
public boolean hasTelecom(ContactPoint item) {
return hasTelecoms() && telecoms.contains(item);
}
public void removeTelecom(ContactPoint item) {
if (hasTelecom(item)) {
telecoms.remove(item);
}
}
/**
* Information about a person that is involved in the care for a patient, but who
* is not the target of healthcare, nor has a formal responsibility in the care
* process.
*
*/
public List<Attachment> getPhotos() {
if (photos == null) { photos = new ArrayList<>(); }
return photos;
}
public boolean hasPhotos() {
return photos != null && !photos.isEmpty();
}
public Attachment addPhoto() {
Attachment theThing = new Attachment();
getPhotos().add(theThing);
return theThing;
}
public boolean hasPhoto(Attachment item) {
return hasPhotos() && photos.contains(item);
}
public void removePhoto(Attachment item) {
if (hasPhoto(item)) {
photos.remove(item);
}
}
/**
* Information about a person that is involved in the care for a patient, but who
* is not the target of healthcare, nor has a formal responsibility in the care
* process.
*
*/
public Period getPeriod() {
if (period == null) { period = new Period(); }
return period;
}
public DkCoreRelatedPerson setPeriod(Period value) {
this.period = value;
return this;
}
public boolean hasPeriod() {
return period != null;
}
/**
* Information about a person that is involved in the care for a patient, but who
* is not the target of healthcare, nor has a formal responsibility in the care
* process.
*
*/
public List<BackboneElement> getCommunications() {
if (communications == null) { communications = new ArrayList<>(); }
return communications;
}
public boolean hasCommunications() {
return communications != null && !communications.isEmpty();
}
public boolean hasCommunication(BackboneElement item) {
return hasCommunications() && communications.contains(item);
}
public void removeCommunication(BackboneElement item) {
if (hasCommunication(item)) {
communications.remove(item);
}
}
public void clear() {
id = null;
extensions.clear();
modifierExtensions.clear();
identifiers.clear();
cpr = null;
xEcpr = null;
dEcpr = null;
patient = null;
official = null;
telecoms.clear();
photos.clear();
period = null;
communications.clear();
}
}

234
org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/profiles/DkCoreXeCprIdentifier.java Normal file
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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public class DkCoreXeCprIdentifier extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-x-ecpr-identifier|3.2.0";
@Min("0") @Max("*") @Doco("Additional content defined by implementations")
@Definition("May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.")
private List<Extension> extensions = new ArrayList<>(); // Additional content defined by implementations
@Min("1") @Max("1") @Doco("The namespace for the identifier value")
@Definition("Establishes the namespace for the value - that is, a URL that describes a set values that are unique.")
private String system;// @NotNull // The namespace for the identifier value
@Min("1") @Max("1") @Doco("The value that is unique")
@Definition("The portion of the identifier typically relevant to the user and which is unique within the context of the system.")
private String value;// @NotNull // The value that is unique
@Min("0") @Max("1") @Doco("Time period when id is/was valid for use")
@Definition("Time period during which identifier is/was valid for use.")
private Period period; // Time period when id is/was valid for use
@Min("0") @Max("1") @Doco("Organization that issued id (may be just text)")
@Definition("Organization that issued/manages the identifier.")
private Reference assigner; // Organization that issued id (may be just text)
/**
* Parameter-less constructor.
*
*/
public DkCoreXeCprIdentifier() {
initFixedValues();
}
/**
* Used when loading other models
*
*/
public static DkCoreXeCprIdentifier fromSource(PEInstance source) {
DkCoreXeCprIdentifier theThing = new DkCoreXeCprIdentifier();
theThing.workerContext = source.getContext();
theThing.load(source);
return theThing;
}
public void load(PEInstance src) {
clear();
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
if (src.hasChild("system")) {
system = ((UriType) src.child("system").asDataType()).getValue();
}
if (src.hasChild("value")) {
value = ((StringType) src.child("value").asDataType()).getValue();
}
if (src.hasChild("period")) {
period = (Period) src.child("period").asDataType();
}
if (src.hasChild("assigner")) {
assigner = (Reference) src.child("assigner").asDataType();
}
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("system");
if (system != null) {
tgt.makeChild("system").data().setProperty("value", new UriType(system));
}
tgt.clear("value");
if (value != null) {
tgt.makeChild("value").data().setProperty("value", new StringType(value));
}
tgt.clear("period");
if (period != null) {
tgt.addChild("period", period);
}
tgt.clear("assigner");
if (assigner != null) {
tgt.addChild("assigner", assigner);
}
}
private void initFixedValues() {
system = "urn:oid:1.2.208.176.1.6.1.1";
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getSystem() {
return system;
}
public boolean hasSystem() {
return true;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getValue() {
return value;
}
public DkCoreXeCprIdentifier setValue(String value) {
this.value = value;
return this;
}
public boolean hasValue() {
return value != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Period getPeriod() {
if (period == null) { period = new Period(); }
return period;
}
public DkCoreXeCprIdentifier setPeriod(Period value) {
this.period = value;
return this;
}
public boolean hasPeriod() {
return period != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Reference getAssigner() {
if (assigner == null) { assigner = new Reference(); }
return assigner;
}
public DkCoreXeCprIdentifier setAssigner(Reference value) {
this.assigner = value;
return this;
}
public boolean hasAssigner() {
return assigner != null;
}
public void clear() {
extensions.clear();
system = null;
value = null;
period = null;
assigner = null;
}
}

234
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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public class GLNIdentifier extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-gln-identifier|3.2.0";
@Min("0") @Max("*") @Doco("Additional content defined by implementations")
@Definition("May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.")
private List<Extension> extensions = new ArrayList<>(); // Additional content defined by implementations
@Min("1") @Max("1") @Doco("The namespace for the identifier value")
@Definition("Establishes the namespace for the value - that is, a URL that describes a set values that are unique.")
private String system;// @NotNull // The namespace for the identifier value
@Min("1") @Max("1") @Doco("The value that is unique")
@Definition("The portion of the identifier typically relevant to the user and which is unique within the context of the system.")
private String value;// @NotNull // The value that is unique
@Min("0") @Max("1") @Doco("Time period when id is/was valid for use")
@Definition("Time period during which identifier is/was valid for use.")
private Period period; // Time period when id is/was valid for use
@Min("0") @Max("1") @Doco("Organization that issued id (may be just text)")
@Definition("Organization that issued/manages the identifier.")
private Reference assigner; // Organization that issued id (may be just text)
/**
* Parameter-less constructor.
*
*/
public GLNIdentifier() {
initFixedValues();
}
/**
* Used when loading other models
*
*/
public static GLNIdentifier fromSource(PEInstance source) {
GLNIdentifier theThing = new GLNIdentifier();
theThing.workerContext = source.getContext();
theThing.load(source);
return theThing;
}
public void load(PEInstance src) {
clear();
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
if (src.hasChild("system")) {
system = ((UriType) src.child("system").asDataType()).getValue();
}
if (src.hasChild("value")) {
value = ((StringType) src.child("value").asDataType()).getValue();
}
if (src.hasChild("period")) {
period = (Period) src.child("period").asDataType();
}
if (src.hasChild("assigner")) {
assigner = (Reference) src.child("assigner").asDataType();
}
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("system");
if (system != null) {
tgt.makeChild("system").data().setProperty("value", new UriType(system));
}
tgt.clear("value");
if (value != null) {
tgt.makeChild("value").data().setProperty("value", new StringType(value));
}
tgt.clear("period");
if (period != null) {
tgt.addChild("period", period);
}
tgt.clear("assigner");
if (assigner != null) {
tgt.addChild("assigner", assigner);
}
}
private void initFixedValues() {
system = "https://www.gs1.org/gln";
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getSystem() {
return system;
}
public boolean hasSystem() {
return true;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getValue() {
return value;
}
public GLNIdentifier setValue(String value) {
this.value = value;
return this;
}
public boolean hasValue() {
return value != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Period getPeriod() {
if (period == null) { period = new Period(); }
return period;
}
public GLNIdentifier setPeriod(Period value) {
this.period = value;
return this;
}
public boolean hasPeriod() {
return period != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Reference getAssigner() {
if (assigner == null) { assigner = new Reference(); }
return assigner;
}
public GLNIdentifier setAssigner(Reference value) {
this.assigner = value;
return this;
}
public boolean hasAssigner() {
return assigner != null;
}
public void clear() {
extensions.clear();
system = null;
value = null;
period = null;
assigner = null;
}
}

234
org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/profiles/KombitOrgIdentifier.java Normal file
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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public class KombitOrgIdentifier extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-kombit-org-identifier|3.2.0";
@Min("0") @Max("*") @Doco("Additional content defined by implementations")
@Definition("May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.")
private List<Extension> extensions = new ArrayList<>(); // Additional content defined by implementations
@Min("1") @Max("1") @Doco("The namespace for the identifier value")
@Definition("Establishes the namespace for the value - that is, a URL that describes a set values that are unique.")
private String system;// @NotNull // The namespace for the identifier value
@Min("1") @Max("1") @Doco("The value that is unique")
@Definition("The portion of the identifier typically relevant to the user and which is unique within the context of the system.")
private String value;// @NotNull // The value that is unique
@Min("0") @Max("1") @Doco("Time period when id is/was valid for use")
@Definition("Time period during which identifier is/was valid for use.")
private Period period; // Time period when id is/was valid for use
@Min("0") @Max("1") @Doco("Organization that issued id (may be just text)")
@Definition("Organization that issued/manages the identifier.")
private Reference assigner; // Organization that issued id (may be just text)
/**
* Parameter-less constructor.
*
*/
public KombitOrgIdentifier() {
initFixedValues();
}
/**
* Used when loading other models
*
*/
public static KombitOrgIdentifier fromSource(PEInstance source) {
KombitOrgIdentifier theThing = new KombitOrgIdentifier();
theThing.workerContext = source.getContext();
theThing.load(source);
return theThing;
}
public void load(PEInstance src) {
clear();
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
if (src.hasChild("system")) {
system = ((UriType) src.child("system").asDataType()).getValue();
}
if (src.hasChild("value")) {
value = ((StringType) src.child("value").asDataType()).getValue();
}
if (src.hasChild("period")) {
period = (Period) src.child("period").asDataType();
}
if (src.hasChild("assigner")) {
assigner = (Reference) src.child("assigner").asDataType();
}
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("system");
if (system != null) {
tgt.makeChild("system").data().setProperty("value", new UriType(system));
}
tgt.clear("value");
if (value != null) {
tgt.makeChild("value").data().setProperty("value", new StringType(value));
}
tgt.clear("period");
if (period != null) {
tgt.addChild("period", period);
}
tgt.clear("assigner");
if (assigner != null) {
tgt.addChild("assigner", assigner);
}
}
private void initFixedValues() {
system = "https://kombit.dk/sts/organisation";
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getSystem() {
return system;
}
public boolean hasSystem() {
return true;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getValue() {
return value;
}
public KombitOrgIdentifier setValue(String value) {
this.value = value;
return this;
}
public boolean hasValue() {
return value != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Period getPeriod() {
if (period == null) { period = new Period(); }
return period;
}
public KombitOrgIdentifier setPeriod(Period value) {
this.period = value;
return this;
}
public boolean hasPeriod() {
return period != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Reference getAssigner() {
if (assigner == null) { assigner = new Reference(); }
return assigner;
}
public KombitOrgIdentifier setAssigner(Reference value) {
this.assigner = value;
return this;
}
public boolean hasAssigner() {
return assigner != null;
}
public void clear() {
extensions.clear();
system = null;
value = null;
period = null;
assigner = null;
}
}

98
org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/profiles/MunicipalityCodes.java Normal file
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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* Identifier holding the official identifier for a danish municipality
*
*/
public class MunicipalityCodes extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-municipalityCodes|3.2.0";
@Min("0") @Max("1") @Doco("Value of extension")
@Definition("Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/R4/extensibility.html) for a list).")
private CodeableConcept value; // Value of extension
/**
* Parameter-less constructor.
*
*/
public MunicipalityCodes() {
}
/**
* Used when loading other models
*
*/
public static MunicipalityCodes fromSource(PEInstance source) {
MunicipalityCodes theThing = new MunicipalityCodes();
theThing.workerContext = source.getContext();
theThing.load(source);
return theThing;
}
public void load(PEInstance src) {
clear();
if (src.hasChild("value")) {
value = (CodeableConcept) src.child("value").asDataType();
}
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("value");
if (value != null) {
tgt.addChild("value", value);
}
}
/**
* Identifier holding the official identifier for a danish municipality
*
*/
public CodeableConcept getValue() {
if (value == null) { value = new CodeableConcept(); }
return value;
}
public MunicipalityCodes setValue(CodeableConcept value) {
this.value = value;
return this;
}
public boolean hasValue() {
return value != null;
}
public void clear() {
value = null;
}
}

70
org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/profiles/NotFollowedAnymore.java Normal file
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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* Extension for the date where a condition lost focus in a specific clinical
* context
*
*/
public class NotFollowedAnymore extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/NotFollowedAnymore|3.2.0";
/**
* Parameter-less constructor.
*
*/
public NotFollowedAnymore() {
}
/**
* Used when loading other models
*
*/
public static NotFollowedAnymore fromSource(PEInstance source) {
NotFollowedAnymore theThing = new NotFollowedAnymore();
theThing.workerContext = source.getContext();
theThing.load(source);
return theThing;
}
public void load(PEInstance src) {
clear();
}
public void save(PEInstance tgt, boolean nulls) {
}
public void clear() {
}
}

234
org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/profiles/ProducentId.java Normal file
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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public class ProducentId extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-producent-id|3.2.0";
@Min("0") @Max("*") @Doco("Additional content defined by implementations")
@Definition("May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.")
private List<Extension> extensions = new ArrayList<>(); // Additional content defined by implementations
@Min("1") @Max("1") @Doco("The namespace for the identifier value")
@Definition("Establishes the namespace for the value - that is, a URL that describes a set values that are unique.")
private String system;// @NotNull // The namespace for the identifier value
@Min("1") @Max("1") @Doco("The value that is unique")
@Definition("The portion of the identifier typically relevant to the user and which is unique within the context of the system.")
private String value;// @NotNull // The value that is unique
@Min("0") @Max("1") @Doco("Time period when id is/was valid for use")
@Definition("Time period during which identifier is/was valid for use.")
private Period period; // Time period when id is/was valid for use
@Min("0") @Max("1") @Doco("Organization that issued id (may be just text)")
@Definition("Organization that issued/manages the identifier.")
private Reference assigner; // Organization that issued id (may be just text)
/**
* Parameter-less constructor.
*
*/
public ProducentId() {
initFixedValues();
}
/**
* Used when loading other models
*
*/
public static ProducentId fromSource(PEInstance source) {
ProducentId theThing = new ProducentId();
theThing.workerContext = source.getContext();
theThing.load(source);
return theThing;
}
public void load(PEInstance src) {
clear();
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
if (src.hasChild("system")) {
system = ((UriType) src.child("system").asDataType()).getValue();
}
if (src.hasChild("value")) {
value = ((StringType) src.child("value").asDataType()).getValue();
}
if (src.hasChild("period")) {
period = (Period) src.child("period").asDataType();
}
if (src.hasChild("assigner")) {
assigner = (Reference) src.child("assigner").asDataType();
}
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("system");
if (system != null) {
tgt.makeChild("system").data().setProperty("value", new UriType(system));
}
tgt.clear("value");
if (value != null) {
tgt.makeChild("value").data().setProperty("value", new StringType(value));
}
tgt.clear("period");
if (period != null) {
tgt.addChild("period", period);
}
tgt.clear("assigner");
if (assigner != null) {
tgt.addChild("assigner", assigner);
}
}
private void initFixedValues() {
system = "http://medcomfhir.dk/ig/terminology/CodeSystem/MedComProducentID";
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getSystem() {
return system;
}
public boolean hasSystem() {
return true;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getValue() {
return value;
}
public ProducentId setValue(String value) {
this.value = value;
return this;
}
public boolean hasValue() {
return value != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Period getPeriod() {
if (period == null) { period = new Period(); }
return period;
}
public ProducentId setPeriod(Period value) {
this.period = value;
return this;
}
public boolean hasPeriod() {
return period != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Reference getAssigner() {
if (assigner == null) { assigner = new Reference(); }
return assigner;
}
public ProducentId setAssigner(Reference value) {
this.assigner = value;
return this;
}
public boolean hasAssigner() {
return assigner != null;
}
public void clear() {
extensions.clear();
system = null;
value = null;
period = null;
assigner = null;
}
}

98
org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/profiles/RegionalSubDivisionCodes.java Normal file
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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* Identifier holding the official organization identifier for a danish region
*
*/
public class RegionalSubDivisionCodes extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-RegionalSubDivisionCodes|3.2.0";
@Min("0") @Max("1") @Doco("Value of extension")
@Definition("Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/R4/extensibility.html) for a list).")
private CodeableConcept value; // Value of extension
/**
* Parameter-less constructor.
*
*/
public RegionalSubDivisionCodes() {
}
/**
* Used when loading other models
*
*/
public static RegionalSubDivisionCodes fromSource(PEInstance source) {
RegionalSubDivisionCodes theThing = new RegionalSubDivisionCodes();
theThing.workerContext = source.getContext();
theThing.load(source);
return theThing;
}
public void load(PEInstance src) {
clear();
if (src.hasChild("value")) {
value = (CodeableConcept) src.child("value").asDataType();
}
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("value");
if (value != null) {
tgt.addChild("value", value);
}
}
/**
* Identifier holding the official organization identifier for a danish region
*
*/
public CodeableConcept getValue() {
if (value == null) { value = new CodeableConcept(); }
return value;
}
public RegionalSubDivisionCodes setValue(CodeableConcept value) {
this.value = value;
return this;
}
public boolean hasValue() {
return value != null;
}
public void clear() {
value = null;
}
}

234
org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/profiles/SORIdentifier.java Normal file
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package org.hl7.fhir.r5.test.profiles;
import java.util.List;
import java.util.ArrayList;
import javax.annotation.Nullable;
import java.util.Date;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.model.*;
import org.hl7.fhir.r5.profilemodel.PEBuilder;
import org.hl7.fhir.r5.profilemodel.PEInstance;
import org.hl7.fhir.r5.profilemodel.PEBuilder.PEElementPropertiesPolicy;
import org.hl7.fhir.r5.profilemodel.gen.PEGeneratedBase;
import org.hl7.fhir.r5.profilemodel.gen.Min;
import org.hl7.fhir.r5.profilemodel.gen.Max;
import org.hl7.fhir.r5.profilemodel.gen.Label;
import org.hl7.fhir.r5.profilemodel.gen.Doco;
import org.hl7.fhir.r5.profilemodel.gen.BindingStrength;
import org.hl7.fhir.r5.profilemodel.gen.ValueSet;
import org.hl7.fhir.r5.profilemodel.gen.MustSupport;
import org.hl7.fhir.r5.profilemodel.gen.Definition;
// Generated by the HAPI Java Profile Generator, 28/10/24, 7:31 am
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public class SORIdentifier extends PEGeneratedBase {
private static final String CANONICAL_URL = "http://hl7.dk/fhir/core/StructureDefinition/dk-core-sor-identifier|3.2.0";
@Min("0") @Max("*") @Doco("Additional content defined by implementations")
@Definition("May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.")
private List<Extension> extensions = new ArrayList<>(); // Additional content defined by implementations
@Min("1") @Max("1") @Doco("The namespace for the identifier value")
@Definition("Establishes the namespace for the value - that is, a URL that describes a set values that are unique.")
private String system;// @NotNull // The namespace for the identifier value
@Min("1") @Max("1") @Doco("The value that is unique")
@Definition("The portion of the identifier typically relevant to the user and which is unique within the context of the system.")
private String value;// @NotNull // The value that is unique
@Min("0") @Max("1") @Doco("Time period when id is/was valid for use")
@Definition("Time period during which identifier is/was valid for use.")
private Period period; // Time period when id is/was valid for use
@Min("0") @Max("1") @Doco("Organization that issued id (may be just text)")
@Definition("Organization that issued/manages the identifier.")
private Reference assigner; // Organization that issued id (may be just text)
/**
* Parameter-less constructor.
*
*/
public SORIdentifier() {
initFixedValues();
}
/**
* Used when loading other models
*
*/
public static SORIdentifier fromSource(PEInstance source) {
SORIdentifier theThing = new SORIdentifier();
theThing.workerContext = source.getContext();
theThing.load(source);
return theThing;
}
public void load(PEInstance src) {
clear();
for (PEInstance item : src.children("extension")) {
extensions.add((Extension) item.asDataType());
}
if (src.hasChild("system")) {
system = ((UriType) src.child("system").asDataType()).getValue();
}
if (src.hasChild("value")) {
value = ((StringType) src.child("value").asDataType()).getValue();
}
if (src.hasChild("period")) {
period = (Period) src.child("period").asDataType();
}
if (src.hasChild("assigner")) {
assigner = (Reference) src.child("assigner").asDataType();
}
}
public void save(PEInstance tgt, boolean nulls) {
tgt.clear("extension");
for (Extension item : extensions) {
tgt.addChild("extension", item);
}
tgt.clear("system");
if (system != null) {
tgt.makeChild("system").data().setProperty("value", new UriType(system));
}
tgt.clear("value");
if (value != null) {
tgt.makeChild("value").data().setProperty("value", new StringType(value));
}
tgt.clear("period");
if (period != null) {
tgt.addChild("period", period);
}
tgt.clear("assigner");
if (assigner != null) {
tgt.addChild("assigner", assigner);
}
}
private void initFixedValues() {
system = "urn:oid:1.2.208.176.1.1";
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public List<Extension> getExtensions() {
if (extensions == null) { extensions = new ArrayList<>(); }
return extensions;
}
public boolean hasExtensions() {
return extensions != null && !extensions.isEmpty();
}
public Extension addExtension() {
Extension theThing = new Extension();
getExtensions().add(theThing);
return theThing;
}
public boolean hasExtension(Extension item) {
return hasExtensions() && extensions.contains(item);
}
public void removeExtension(Extension item) {
if (hasExtension(item)) {
extensions.remove(item);
}
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getSystem() {
return system;
}
public boolean hasSystem() {
return true;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public String getValue() {
return value;
}
public SORIdentifier setValue(String value) {
this.value = value;
return this;
}
public boolean hasValue() {
return value != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Period getPeriod() {
if (period == null) { period = new Period(); }
return period;
}
public SORIdentifier setPeriod(Period value) {
this.period = value;
return this;
}
public boolean hasPeriod() {
return period != null;
}
/**
* An identifier - identifies some entity uniquely and unambiguously. Typically
* this is used for business identifiers.
*
*/
public Reference getAssigner() {
if (assigner == null) { assigner = new Reference(); }
return assigner;
}
public SORIdentifier setAssigner(Reference value) {
this.assigner = value;
return this;
}
public boolean hasAssigner() {
return assigner != null;
}
public void clear() {
extensions.clear();
system = null;
value = null;
period = null;
assigner = null;
}
}

5
org.hl7.fhir.utilities/src/main/java/org/hl7/fhir/utilities/VersionUtil.java
View File

@ -101,4 +101,9 @@ public class VersionUtil {
return "??";
}
}
public static String getBaseVersion() {
String ver = getVersion();
return ver.contains("-") ? ver.substring(0, ver.indexOf("-")) : ver;
}
}

2
org.hl7.fhir.utilities/src/main/java/org/hl7/fhir/utilities/i18n/I18nConstants.java
View File

@ -1044,6 +1044,8 @@ public class I18nConstants {
public static final String VALUESET_TOO_COSTLY = "VALUESET_TOO_COSTLY";
public static final String VALUESET_TOO_COSTLY_COUNT = "VALUESET_TOO_COSTLY_COUNT";
public static final String VALUESET_TOO_COSTLY_TIME = "VALUESET_TOO_COSTLY_TIME";
public static final String TX_SERVER_NOT_READY = "TX_SERVER_NOT_READY";
public static final String REQUEST_TOO_COSTLY_TIME = "REQUEST_TOO_COSTLY_TIME";
public static final String VALUESET_UNC_SYSTEM_WARNING = "VALUESET_UNC_SYSTEM_WARNING";
public static final String VALUESET_UNC_SYSTEM_WARNING_VER = "VALUESET_UNC_SYSTEM_WARNING_VER";
public static final String VALUESET_UNKNOWN_FILTER_PROPERTY = "VALUESET_UNKNOWN_FILTER_PROPERTY";

2
org.hl7.fhir.utilities/src/main/resources/Messages.properties
View File

@ -1033,6 +1033,8 @@ VALUESET_SUPPLEMENT_MISSING_other = Required supplements not found: {1}
VALUESET_TOO_COSTLY = The value set ''{0}'' expansion has too many codes to display ({1})
VALUESET_TOO_COSTLY_COUNT = The value set ''{0}'' expansion has {2} codes, which is too many to display ({1})
VALUESET_TOO_COSTLY_TIME = The value set ''{0}'' {2} took too long to process (>{1}sec)
REQUEST_TOO_COSTLY_TIME = Request took too long to process (>{0}sec)
TX_SERVER_NOT_READY = The full data set is only {0}% loaded ({1} of {2}) for searching - repeat this query in a few minutes (max ~15min)');
VALUESET_UNC_SYSTEM_WARNING = Unknown System ''{0}'' specified, so Concepts and Filters can''t be checked (Details: {1})
VALUESET_UNC_SYSTEM_WARNING_VER = Unknown System/Version ''{0}'' specified, so Concepts and Filters can''t be checked (Details: {1})
VALUESET_UNKNOWN_FILTER_PROPERTY = The property ''{0}'' is not known for the system ''{1}'', so may not be understood by the terminology ecosystem. Known properties for this system: {2}

2
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/NativeHostServices.java
View File

@ -171,7 +171,7 @@ public class NativeHostServices {
* @throws Exception
*/
public void connectToTxSvc(String txServer, String log, String txCache) throws Exception {
validator.connectToTSServer(txServer, log, txCache, FhirPublication.R5, false);
validator.connectToTSServer(txServer, log, txCache, FhirPublication.fromCode(validator.getVersion()), false);
}
/**

61
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/InstanceValidator.java
View File

@ -33,20 +33,30 @@ package org.hl7.fhir.validation.instance;
import static org.apache.commons.lang3.StringUtils.isBlank;
import static org.apache.commons.lang3.StringUtils.isNotBlank;
import java.io.File;
import java.io.IOException;
import java.io.InputStream;
import java.math.BigDecimal;
import java.net.URI;
import java.net.URISyntaxException;
import java.util.*;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Calendar;
import java.util.Collection;
import java.util.Collections;
import java.util.EnumSet;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.Set;
import java.util.UUID;
import javax.annotation.Nonnull;
import org.apache.commons.lang3.NotImplementedException;
import org.apache.commons.lang3.StringUtils;
import org.fhir.ucum.Decimal;
import org.hl7.fhir.exceptions.DefinitionException;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.exceptions.PathEngineException;
@ -55,7 +65,6 @@ import org.hl7.fhir.r5.conformance.profile.ProfileUtilities;
import org.hl7.fhir.r5.conformance.profile.ProfileUtilities.SourcedChildDefinitions;
import org.hl7.fhir.r5.context.ContextUtilities;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.context.IWorkerContext.OIDDefinition;
import org.hl7.fhir.r5.context.IWorkerContext.OIDSummary;
import org.hl7.fhir.r5.elementmodel.Element;
import org.hl7.fhir.r5.elementmodel.Element.SpecialElement;
@ -65,17 +74,17 @@ import org.hl7.fhir.r5.elementmodel.Manager.FhirFormat;
import org.hl7.fhir.r5.elementmodel.ObjectConverter;
import org.hl7.fhir.r5.elementmodel.ParserBase;
import org.hl7.fhir.r5.elementmodel.ParserBase.ValidationPolicy;
import org.hl7.fhir.r5.fhirpath.ExpressionNode;
import org.hl7.fhir.r5.fhirpath.FHIRPathEngine;
import org.hl7.fhir.r5.fhirpath.TypeDetails;
import org.hl7.fhir.r5.fhirpath.ExpressionNode.CollectionStatus;
import org.hl7.fhir.r5.fhirpath.FHIRLexer.FHIRLexerException;
import org.hl7.fhir.r5.fhirpath.FHIRPathEngine.IEvaluationContext;
import org.hl7.fhir.r5.fhirpath.FHIRPathUtilityClasses.FunctionDetails;
import org.hl7.fhir.r5.fhirpath.FHIRPathUtilityClasses.TypedElementDefinition;
import org.hl7.fhir.r5.elementmodel.ResourceParser;
import org.hl7.fhir.r5.elementmodel.ValidatedFragment;
import org.hl7.fhir.r5.elementmodel.XmlParser;
import org.hl7.fhir.r5.fhirpath.ExpressionNode;
import org.hl7.fhir.r5.fhirpath.ExpressionNode.CollectionStatus;
import org.hl7.fhir.r5.fhirpath.FHIRLexer.FHIRLexerException;
import org.hl7.fhir.r5.fhirpath.FHIRPathEngine;
import org.hl7.fhir.r5.fhirpath.FHIRPathEngine.IEvaluationContext;
import org.hl7.fhir.r5.fhirpath.FHIRPathUtilityClasses.FunctionDetails;
import org.hl7.fhir.r5.fhirpath.FHIRPathUtilityClasses.TypedElementDefinition;
import org.hl7.fhir.r5.fhirpath.TypeDetails;
import org.hl7.fhir.r5.formats.FormatUtilities;
import org.hl7.fhir.r5.model.Address;
import org.hl7.fhir.r5.model.Attachment;
@ -114,7 +123,6 @@ import org.hl7.fhir.r5.model.ElementDefinition.TypeRefComponent;
import org.hl7.fhir.r5.model.Enumeration;
import org.hl7.fhir.r5.model.Enumerations.BindingStrength;
import org.hl7.fhir.r5.model.Enumerations.CodeSystemContentMode;
import org.hl7.fhir.r5.model.Enumerations.PublicationStatus;
import org.hl7.fhir.r5.model.Extension;
import org.hl7.fhir.r5.model.HumanName;
import org.hl7.fhir.r5.model.Identifier;
@ -148,7 +156,6 @@ import org.hl7.fhir.r5.model.UrlType;
import org.hl7.fhir.r5.model.UsageContext;
import org.hl7.fhir.r5.model.ValueSet;
import org.hl7.fhir.r5.model.ValueSet.ValueSetExpansionContainsComponent;
import org.hl7.fhir.r5.renderers.DataRenderer;
import org.hl7.fhir.r5.terminologies.utilities.TerminologyServiceErrorClass;
import org.hl7.fhir.r5.terminologies.utilities.ValidationResult;
import org.hl7.fhir.r5.utils.BuildExtensions;
@ -159,27 +166,22 @@ import org.hl7.fhir.r5.utils.XVerExtensionManager.XVerExtensionStatus;
import org.hl7.fhir.r5.utils.sql.Validator;
import org.hl7.fhir.r5.utils.sql.Validator.TrueFalseOrUnknown;
import org.hl7.fhir.r5.utils.validation.BundleValidationRule;
import org.hl7.fhir.r5.utils.validation.IMessagingServices;
import org.hl7.fhir.r5.utils.validation.IResourceValidator;
import org.hl7.fhir.r5.utils.validation.IValidationPolicyAdvisor;
import org.hl7.fhir.r5.utils.validation.IValidationProfileUsageTracker;
import org.hl7.fhir.r5.utils.validation.IValidatorResourceFetcher;
import org.hl7.fhir.r5.utils.validation.IValidationPolicyAdvisor.CodedContentValidationAction;
import org.hl7.fhir.r5.utils.validation.IValidationPolicyAdvisor.ElementValidationAction;
import org.hl7.fhir.r5.utils.validation.IValidationProfileUsageTracker;
import org.hl7.fhir.r5.utils.validation.IValidatorResourceFetcher;
import org.hl7.fhir.r5.utils.validation.constants.BestPracticeWarningLevel;
import org.hl7.fhir.r5.utils.validation.constants.BindingKind;
import org.hl7.fhir.r5.utils.validation.constants.CheckDisplayOption;
import org.hl7.fhir.r5.utils.validation.constants.CodedContentValidationPolicy;
import org.hl7.fhir.r5.utils.validation.constants.ContainedReferenceValidationPolicy;
import org.hl7.fhir.r5.utils.validation.constants.IdStatus;
import org.hl7.fhir.r5.utils.validation.constants.ReferenceValidationPolicy;
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
import org.hl7.fhir.utilities.FhirPublication;
import org.hl7.fhir.utilities.HL7WorkGroups;
import org.hl7.fhir.utilities.HL7WorkGroups.HL7WorkGroup;
import org.hl7.fhir.utilities.MarkDownProcessor;
import org.hl7.fhir.utilities.SIDUtilities;
import org.hl7.fhir.utilities.StandardsStatus;
import org.hl7.fhir.utilities.TextFile;
import org.hl7.fhir.utilities.UnicodeUtilities;
import org.hl7.fhir.utilities.Utilities;
@ -201,8 +203,6 @@ import org.hl7.fhir.validation.BaseValidator;
import org.hl7.fhir.validation.cli.model.HtmlInMarkdownCheck;
import org.hl7.fhir.validation.cli.utils.QuestionnaireMode;
import org.hl7.fhir.validation.codesystem.CodingsObserver;
import org.hl7.fhir.validation.instance.InstanceValidator.BindingContext;
import org.hl7.fhir.validation.instance.advisor.BasePolicyAdvisorForFullValidation;
import org.hl7.fhir.validation.instance.type.BundleValidator;
import org.hl7.fhir.validation.instance.type.CodeSystemValidator;
import org.hl7.fhir.validation.instance.type.ConceptMapValidator;
@ -216,7 +216,20 @@ import org.hl7.fhir.validation.instance.type.StructureMapValidator;
import org.hl7.fhir.validation.instance.type.StructureMapValidator.VariableDefn;
import org.hl7.fhir.validation.instance.type.StructureMapValidator.VariableSet;
import org.hl7.fhir.validation.instance.type.ValueSetValidator;
import org.hl7.fhir.validation.instance.utils.*;
import org.hl7.fhir.validation.instance.utils.Base64Util;
import org.hl7.fhir.validation.instance.utils.CanonicalResourceLookupResult;
import org.hl7.fhir.validation.instance.utils.CanonicalTypeSorter;
import org.hl7.fhir.validation.instance.utils.ChildIterator;
import org.hl7.fhir.validation.instance.utils.ElementInfo;
import org.hl7.fhir.validation.instance.utils.EnableWhenEvaluator;
import org.hl7.fhir.validation.instance.utils.FHIRPathExpressionFixer;
import org.hl7.fhir.validation.instance.utils.IndexedElement;
import org.hl7.fhir.validation.instance.utils.NodeStack;
import org.hl7.fhir.validation.instance.utils.ResolvedReference;
import org.hl7.fhir.validation.instance.utils.ResourceValidationTracker;
import org.hl7.fhir.validation.instance.utils.StructureDefinitionSorterByUrl;
import org.hl7.fhir.validation.instance.utils.UrlUtil;
import org.hl7.fhir.validation.instance.utils.ValidationContext;
import org.w3c.dom.Document;

66
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/special/TxTester.java
View File

@ -1,10 +1,15 @@
package org.hl7.fhir.validation.special;
import java.io.BufferedReader;
import java.io.ByteArrayInputStream;
import java.io.DataInputStream;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileNotFoundException;
import java.io.FileReader;
import java.io.IOException;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.net.HttpURLConnection;
import java.net.URI;
import java.net.URISyntaxException;
@ -13,6 +18,7 @@ import java.nio.file.Path;
import java.text.SimpleDateFormat;
import java.util.ArrayList;
import java.util.Calendar;
import java.util.Collection;
import java.util.GregorianCalendar;
import java.util.List;
import java.util.Locale;
@ -27,6 +33,7 @@ import org.hl7.fhir.exceptions.DefinitionException;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.exceptions.FHIRFormatError;
import org.hl7.fhir.r5.formats.IParser.OutputStyle;
import org.hl7.fhir.r5.model.CapabilityStatement;
import org.hl7.fhir.r5.model.OperationOutcome;
import org.hl7.fhir.r5.model.Parameters;
import org.hl7.fhir.r5.model.Resource;
@ -38,6 +45,7 @@ import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
import org.hl7.fhir.utilities.FhirPublication;
import org.hl7.fhir.utilities.TextFile;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.VersionUtil;
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
import org.hl7.fhir.utilities.json.JsonException;
import org.hl7.fhir.utilities.json.model.JsonArray;
@ -62,6 +70,8 @@ public class TxTester {
private ITerminologyClient tx;
private boolean tight;
private JsonObject externals;
private String software;
private List<String> fails = new ArrayList<>();
public TxTester(ITxTesterLoader loader, String server, boolean tight, JsonObject externals) {
@ -116,13 +126,21 @@ public class TxTester {
}
}
TextFile.stringToFile(JsonParser.compose(json, true), Utilities.path(output, "test-results.json"));
if (ok) {
System.out.println("Terminology Service Tests all passed");
return true;
if (filter == null) {
String m = modes.isEmpty() ? "[none]" : CommaSeparatedStringBuilder.join(";", modes);
if (ok) {
System.out.println(software+" passed all HL7 terminology service tests (modes "+m+", tests v"+loadVersion()+", runner v"+VersionUtil.getBaseVersion()+")");
return true;
} else {
System.out.println(software+" did not pass all HL7 terminology service tests (modes "+m+", tests v"+loadVersion()+", runner v"+VersionUtil.getBaseVersion()+")");
System.out.println("Failed Tests: "+CommaSeparatedStringBuilder.join(",", fails ));
return false;
}
} else {
System.out.println("Terminology Service Tests did not all pass");
return false;
}
System.out.println(software+" "+(ok ? "Passed the tests" : "did not pass the tests")+" '"+filter+"'");
return ok;
}
} catch (Exception e) {
System.out.println("Exception running Terminology Service Tests: "+e.getMessage());
e.printStackTrace();
@ -143,7 +161,10 @@ public class TxTester {
}
private boolean checkClient(ITerminologyClient tx) {
tx.getCapabilitiesStatementQuick();
CapabilityStatement cstmt = tx.getCapabilitiesStatementQuick();
if (cstmt.hasSoftware()) {
software = cstmt.getSoftware().getName()+" v"+cstmt.getSoftware().getVersion();
}
tx.getTerminologyCapabilities();
return true;
}
@ -152,9 +173,32 @@ public class TxTester {
System.out.println("Load Tests from "+loader.describe());
return JsonParser.parseObject(loader.loadContent("test-cases.json"));
}
private String loadVersion() throws JsonException, IOException {
return processHistoryMarkdown(loader.loadContent("history.md"));
}
private String processHistoryMarkdown(byte[] content) throws IOException {
DataInputStream in = new DataInputStream(new ByteArrayInputStream(content));
BufferedReader br = new BufferedReader(new InputStreamReader(in));
try {
String strLine;
//Read File Line By Line
while ((strLine = br.readLine()) != null) {
if (strLine.startsWith("## ")) {
return strLine.substring(3);
}
}
} finally {
br.close();
in.close();
}
return "<1.6.0";
}
private ITerminologyClient connectToServer(List<String> modes) throws URISyntaxException {
System.out.println("Connect to "+server);
software = server;
ITerminologyClient client = new TerminologyClientFactory(FhirPublication.R4).makeClient("Test-Server", server, "Tools/Java", null);
return client;
}
@ -168,7 +212,7 @@ public class TxTester {
}
List<Resource> setup = loadSetupResources(suite);
if (runTest(test, tx, setup, modes, "*", null)) {
if (runTest(suite, test, tx, setup, modes, "*", null)) {
return null;
} else {
return error;
@ -189,14 +233,14 @@ public class TxTester {
if (test.asBoolean("disabled")) {
ok = true;
} else {
ok = runTest(test, tx, setup, modes, filter, outputS.forceArray("tests")) && ok;
ok = runTest(suite, test, tx, setup, modes, filter, outputS.forceArray("tests")) && ok;
}
}
}
return ok;
}
private boolean runTest(JsonObject test, ITerminologyClient tx, List<Resource> setup, List<String> modes, String filter, JsonArray output) throws FHIRFormatError, DefinitionException, FileNotFoundException, FHIRException, IOException {
private boolean runTest(JsonObject suite, JsonObject test, ITerminologyClient tx, List<Resource> setup, List<String> modes, String filter, JsonArray output) throws FHIRFormatError, DefinitionException, FileNotFoundException, FHIRException, IOException {
JsonObject outputT = new JsonObject();
if (output != null) {
output.add(outputT);
@ -247,6 +291,7 @@ public class TxTester {
if (msg != null) {
System.out.println(" "+msg);
error = msg;
fails.add(suite.asString("name")+"/"+test.asString("name"));
}
outputT.add("status", msg == null ? "pass" : "fail");
if (msg != null) {
@ -259,6 +304,7 @@ public class TxTester {
} catch (Exception e) {
System.out.println(" ... Exception: "+e.getMessage());
System.out.print(" ");
fails.add(suite.asString("name")+"/"+test.asString("name"));
error = e.getMessage();
e.printStackTrace();
if (header != null) {

4
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/terminology/tests/OntoserverTests.java
View File

@ -48,7 +48,7 @@ public class OntoserverTests implements ITxTesterLoader {
private JsonObject test;
}
private static final String SERVER = "https://tx.ontoserver.csiro.au/fhir";
private static final String SERVER = "https://r4.ontoserver.csiro.au/fhir";
private static boolean localTxRunning() throws IOException {
return ManagedFileAccess.file("/Users/grahamegrieve/work/server/server").exists();
@ -118,7 +118,7 @@ public class OntoserverTests implements ITxTesterLoader {
if (err != null) {
System.out.println(err);
}
Assertions.assertTrue(err == null, err); // we don't care what the result is, only that we didn't crash
Assertions.assertTrue(true); // we don't care what the result is, only that we didn't crash
}

72
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/validation/tests/ValidationEngineTests.java
View File

@ -53,54 +53,54 @@ public class ValidationEngineTests {
}
final String[] testInputs = {
INPUT_1,
INPUT_1,
INPUT_2,
INPUT_3,
INPUT_1,
INPUT_2,
INPUT_3,
INPUT_1,
INPUT_2,
INPUT_3
INPUT_1,
INPUT_1,
INPUT_2,
INPUT_3,
INPUT_1,
INPUT_2,
INPUT_3,
INPUT_1,
INPUT_2,
INPUT_3
};
// Pick 3 validation cases
final String[][] testCodes = {
ISSUE_CODES_1,
ISSUE_CODES_1,
ISSUE_CODES_2,
ISSUE_CODES_3,
ISSUE_CODES_1,
ISSUE_CODES_2,
ISSUE_CODES_3,
ISSUE_CODES_1,
ISSUE_CODES_2,
ISSUE_CODES_3
ISSUE_CODES_1,
ISSUE_CODES_1,
ISSUE_CODES_2,
ISSUE_CODES_3,
ISSUE_CODES_1,
ISSUE_CODES_2,
ISSUE_CODES_3,
ISSUE_CODES_1,
ISSUE_CODES_2,
ISSUE_CODES_3
};
List<Thread> threads = new ArrayList<>();
for (int i = 0; i < validationEngines.length; i++) {
final int index = i;
Thread t = new Thread(() -> {
Thread t = new Thread(() -> {
try {
final String testInput = testInputs[index];
outcomes[index] = validationEngines[index].validate(FhirFormat.JSON, TestingUtilities.loadTestResourceStream("validator", testInput), null);
} catch (Exception e) {
e.printStackTrace();
System.err.println("Thread " + index + " failed");
}
});
t.start();
threads.add(t);
}
threads.forEach(t -> {
try {
final String testInput = testInputs[index];
outcomes[index] = validationEngines[index].validate(FhirFormat.JSON, TestingUtilities.loadTestResourceStream("validator", testInput), null);
} catch (Exception e) {
e.printStackTrace();
System.err.println("Thread " + index + " failed");
t.join();
} catch (InterruptedException e) {
}
});
t.start();
threads.add(t);
}
threads.forEach(t -> {
try {
t.join();
} catch (InterruptedException e) {
}
});
for (int i = 0; i < outcomes.length; i++) {
assertEquals(testCodes[i].length, outcomes[i].getIssue().size());

1
org.hl7.fhir.validation/src/test/resources/txCache/org.hl7.fhir.validation/4.0.1/vs-externals.json
View File

@ -3,6 +3,7 @@
"http://loinc.org/vs/LL378-1" : null,
"http://www.rfc-editor.org/bcp/bcp13.txt" : null,
"http://loinc.org/vs/LL1971-2" : null,
"http://hl7.org/fhir/us/davinci-hrex/ValueSet/hrex-endpoint-name" : null,
"http://fhir.ch/ig/ch-ig/ValueSet/ch-ig-example" : null,
"http://hl7.org/fhir/us/qicore/ValueSet/qicore-negation-reason" : null,
"http://hl7.org/fhir/smart-app-launch/ValueSet/user-access-category" : null,

4096
org.hl7.fhir.validation/src/test/resources/txCache/org.hl7.fhir.validation/5.0.0/.terminologyCapabilities.tx-dev.fhir.org.r5.cache Normal file
View File

File diff suppressed because it is too large Load Diff

1
org.hl7.fhir.validation/src/test/resources/txCache/org.hl7.fhir.validation/5.0.0/servers.ini
View File

@ -1,3 +1,4 @@
[servers]
tx-dev.fhir.org.r4 = http://tx-dev.fhir.org/r4
tx-dev.fhir.org.r5 = http://tx-dev.fhir.org/r5