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validate using inline questionnaires

This commit is contained in:
Grahame Grieve 2019-04-09 17:48:51 +10:00
parent b3eef86536
commit 599156202a
1 changed files with 60 additions and 2 deletions
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62
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/r5/validation/InstanceValidator.java
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@ -23,6 +23,7 @@ package org.hl7.fhir.r5.validation;
import static org.apache.commons.lang3.StringUtils.isBlank;
import static org.apache.commons.lang3.StringUtils.isNotBlank;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.io.InputStream;
import java.util.ArrayList;
@ -39,6 +40,10 @@ import org.apache.commons.lang3.StringUtils;
import org.hl7.fhir.r5.model.Reference;
import org.hl7.fhir.exceptions.*;
import org.hl7.fhir.convertors.VersionConvertorConstants;
import org.hl7.fhir.convertors.VersionConvertor_10_50;
import org.hl7.fhir.convertors.VersionConvertor_14_50;
import org.hl7.fhir.convertors.VersionConvertor_30_50;
import org.hl7.fhir.convertors.VersionConvertor_40_50;
import org.hl7.fhir.exceptions.DefinitionException;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.exceptions.PathEngineException;
@ -56,6 +61,7 @@ import org.hl7.fhir.r5.elementmodel.ParserBase;
import org.hl7.fhir.r5.elementmodel.ParserBase.ValidationPolicy;
import org.hl7.fhir.r5.elementmodel.XmlParser;
import org.hl7.fhir.r5.formats.FormatUtilities;
import org.hl7.fhir.r5.formats.IParser.OutputStyle;
import org.hl7.fhir.r5.model.Address;
import org.hl7.fhir.r5.model.Attachment;
import org.hl7.fhir.r5.model.Base;
@ -82,8 +88,10 @@ import org.hl7.fhir.r5.model.ElementDefinition.PropertyRepresentation;
import org.hl7.fhir.r5.model.ElementDefinition.TypeRefComponent;
import org.hl7.fhir.r5.model.Enumeration;
import org.hl7.fhir.r5.model.Enumerations.BindingStrength;
import org.hl7.fhir.r5.model.Enumerations.FHIRVersion;
import org.hl7.fhir.r5.model.ExpressionNode;
import org.hl7.fhir.r5.model.Extension;
import org.hl7.fhir.r5.model.FhirPublication;
import org.hl7.fhir.r5.model.HumanName;
import org.hl7.fhir.r5.model.Identifier;
import org.hl7.fhir.r5.model.ImplementationGuide;
@ -120,6 +128,7 @@ import org.hl7.fhir.r5.utils.IResourceValidator;
import org.hl7.fhir.r5.utils.ToolingExtensions;
import org.hl7.fhir.r5.utils.ValidationProfileSet;
import org.hl7.fhir.r5.utils.ValidationProfileSet.ProfileRegistration;
import org.hl7.fhir.r5.utils.Version;
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.validation.ValidationMessage;
@ -2775,7 +2784,7 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
} // todo... try getting the value set the other way...
}
private void validateQuestionannaireResponse(List<ValidationMessage> errors, Element element, NodeStack stack) {
private void validateQuestionannaireResponse(List<ValidationMessage> errors, Element element, NodeStack stack) throws FHIRException, IOException {
Element q = element.getNamedChild("questionnaire");
String questionnaire = null;
if (q != null) {
@ -2793,7 +2802,7 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
}
if (hint(errors, IssueType.REQUIRED, element.line(), element.col(), stack.getLiteralPath(), questionnaire != null, "No questionnaire is identified, so no validation can be performed against the base questionnaire")) {
long t = System.nanoTime();
Questionnaire qsrc = context.fetchResource(Questionnaire.class, questionnaire);
Questionnaire qsrc = questionnaire.startsWith("#") ? loadQuestionnaire(element, questionnaire.substring(1)) : context.fetchResource(Questionnaire.class, questionnaire);
sdTime = sdTime + (System.nanoTime() - t);
if (warning(errors, IssueType.REQUIRED, q.line(), q.col(), stack.getLiteralPath(), qsrc != null, "The questionnaire \""+questionnaire+"\" could not be resolved, so no validation can be performed against the base questionnaire")) {
boolean inProgress = "in-progress".equals(element.getNamedChildValue("status"));
@ -2802,6 +2811,55 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
}
}
private Questionnaire loadQuestionnaire(Element resource, String id) throws FHIRException, IOException {
for (Element contained : resource.getChildren("contained")) {
if (contained.getIdBase().equals(id)) {
FhirPublication v = FhirPublication.fromCode(context.getVersion());
ByteArrayOutputStream bs = new ByteArrayOutputStream();
new JsonParser(context).compose(contained, bs, OutputStyle.NORMAL, id);
byte[] json = bs.toByteArray();
switch (v) {
case DSTU1: throw new FHIRException("Unsupported version R1");
case DSTU2:
org.hl7.fhir.dstu2.model.Resource r2 = new org.hl7.fhir.dstu2.formats.JsonParser().parse(json);
Resource r5 = new VersionConvertor_10_50(null).convertResource(r2);
if (r5 instanceof Questionnaire)
return (Questionnaire) r5;
else
return null;
case DSTU2016May:
org.hl7.fhir.dstu2016may.model.Resource r2a = new org.hl7.fhir.dstu2016may.formats.JsonParser().parse(json);
r5 = VersionConvertor_14_50.convertResource(r2a);
if (r5 instanceof Questionnaire)
return (Questionnaire) r5;
else
return null;
case STU3:
org.hl7.fhir.dstu3.model.Resource r3 = new org.hl7.fhir.dstu3.formats.JsonParser().parse(json);
r5 = VersionConvertor_30_50.convertResource(r3, false);
if (r5 instanceof Questionnaire)
return (Questionnaire) r5;
else
return null;
case R4:
org.hl7.fhir.r4.model.Resource r4 = new org.hl7.fhir.r4.formats.JsonParser().parse(json);
r5 = VersionConvertor_40_50.convertResource(r4);
if (r5 instanceof Questionnaire)
return (Questionnaire) r5;
else
return null;
case R5:
r5 = new org.hl7.fhir.r5.formats.JsonParser().parse(json);
if (r5 instanceof Questionnaire)
return (Questionnaire) r5;
else
return null;
}
}
}
return null;
}
private void validateQuestionannaireResponseItem(Questionnaire qsrc, QuestionnaireItemComponent qItem, List<ValidationMessage> errors, Element element, NodeStack stack, boolean inProgress, Element questionnaireResponseRoot) {
String text = element.getNamedChildValue("text");
rule(errors, IssueType.INVALID, element.line(), element.col(), stack.getLiteralPath(), Utilities.noString(text) || text.equals(qItem.getText()), "If text exists, it must match the questionnaire definition for linkId "+qItem.getLinkId());