Merge pull request #90 from ahdis/oliveregger_snapshotgenforspecialization
snapshot generation for specialization
This commit is contained in:
Grahame Grieve
GitHub
commit
751a3d2f9a
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@ -429,7 +429,7 @@ public class ProfileUtilities extends TranslatingUtilities {
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throw new DefinitionException("Base profile "+base.getUrl()+" has no type");
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if (!derived.hasType())
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throw new DefinitionException("Derived profile "+derived.getUrl()+" has no type");
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if (!base.getType().equals(derived.getType()))
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if (!base.getType().equals(derived.getType()) && derived.getDerivation().equals(TypeDerivationRule.CONSTRAINT))
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throw new DefinitionException("Base & Derived profiles have different types ("+base.getUrl()+" = "+base.getType()+" vs "+derived.getUrl()+" = "+derived.getType()+")");
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if (snapshotStack.contains(derived.getUrl()))
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@ -461,9 +461,22 @@ public class ProfileUtilities extends TranslatingUtilities {
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// we actually delegate the work to a subroutine so we can re-enter it with a different cursors
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StructureDefinitionDifferentialComponent diff = cloneDiff(derived.getDifferential()); // we make a copy here because we're sometimes going to hack the differential while processing it. Have to migrate user data back afterwards
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processPaths("", derived.getSnapshot(), base.getSnapshot(), diff, baseCursor, diffCursor, base.getSnapshot().getElement().size()-1,
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StructureDefinitionSnapshotComponent baseSnapshot = base.getSnapshot();
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if (derived.getDerivation().equals(TypeDerivationRule.SPECIALIZATION)) {
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baseSnapshot = cloneSnapshot(baseSnapshot, base.getType(), derived.getType());
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}
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processPaths("", derived.getSnapshot(), baseSnapshot, diff, baseCursor, diffCursor, baseSnapshot.getElement().size()-1,
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derived.getDifferential().hasElement() ? derived.getDifferential().getElement().size()-1 : -1, url, webUrl, derived.present(), null, null, false, base.getUrl(), null, false, new ArrayList<ElementRedirection>(), base);
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if (derived.getDerivation().equals(TypeDerivationRule.SPECIALIZATION)) {
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for (ElementDefinition e : diff.getElement()) {
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if (!e.hasUserData(GENERATED_IN_SNAPSHOT)) {
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ElementDefinition outcome = updateURLs(url, webUrl, e.copy());
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e.setUserData(GENERATED_IN_SNAPSHOT, outcome);
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derived.getSnapshot().addElement(outcome);
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}
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}
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}
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if (!derived.getSnapshot().getElementFirstRep().getType().isEmpty())
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throw new Error("type on first snapshot element for "+derived.getSnapshot().getElementFirstRep().getPath()+" in "+derived.getUrl()+" from "+base.getUrl());
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updateMaps(base, derived);
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@ -519,6 +532,16 @@ public class ProfileUtilities extends TranslatingUtilities {
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return diff;
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}
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private StructureDefinitionSnapshotComponent cloneSnapshot(StructureDefinitionSnapshotComponent source, String baseType, String derivedType) {
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StructureDefinitionSnapshotComponent diff = new StructureDefinitionSnapshotComponent();
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for (ElementDefinition sed : source.getElement()) {
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ElementDefinition ted = sed.copy();
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ted.setId(ted.getId().replaceFirst(baseType,derivedType));
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ted.setPath(ted.getPath().replaceFirst(baseType,derivedType));
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diff.getElement().add(ted);
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}
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return diff;
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}
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private String constraintSummary(ElementDefinition ed) {
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CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
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@ -0,0 +1,234 @@
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<?xml version="1.0" encoding="UTF-8"?>
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<StructureDefinition xmlns="http://hl7.org/fhir">
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<id value="ANY"/>
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<text>
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<status value="generated"/>
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<div xmlns="http://www.w3.org/1999/xhtml">
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<p>Defines the basic properties of every data value. This is an abstract type, meaning that no value can be just a data value without belonging to any concrete type. Every concrete type is a specialization of this general abstract DataValue type.</p>
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<hr/>
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<table border="0" cellpadding="0" cellspacing="0" style="border: 0px #F0F0F0 solid; font-size: 11px; font-family: verdana; vertical-align: top;">
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<tr style="border: 1px #F0F0F0 solid; font-size: 11px; font-family: verdana; vertical-align: top;">
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<th style="vertical-align: top; text-align : left; background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">
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<a href="nullformats.html#table" title="The logical name of the element">Name</a>
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</th>
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<th style="vertical-align: top; text-align : left; background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">
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<a href="nullformats.html#table" title="Information about the use of the element">Flags</a>
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</th>
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<th style="vertical-align: top; text-align : left; background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">
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<a href="nullformats.html#table" title="Minimum and Maximum # of times the the element can appear in the instance">Card.</a>
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</th>
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<th style="width: 100px" class="hierarchy">
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<a href="nullformats.html#table" title="Reference to the type of the element">Type</a>
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</th>
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<th style="vertical-align: top; text-align : left; background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">
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<a href="nullformats.html#table" title="Additional information about the element">Description & Constraints</a>
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<span style="float: right">
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<a href="nullformats.html#table" title="Legend for this format">
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<img src="nullhelp16.png" alt="doco" style="background-color: inherit"/>
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</a>
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</span>
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</th>
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</tr>
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<tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: white;">
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<td style="vertical-align: top; text-align : left; background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck1.png)" class="hierarchy">
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<img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/>
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<img src="icon_element.gif" alt="." style="background-color: white; background-color: inherit" title="Element" class="hierarchy"/>
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<span title="Defines the basic properties of every data value. This is an abstract type, meaning that no value can be just a data value without belonging to any concrete type. Every concrete type is a specialization of this general abstract DataValue type.">ANY</span>
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<a name="ANY"> </a>
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</td>
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<td style="vertical-align: top; text-align : left; background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/>
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<td style="vertical-align: top; text-align : left; background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">1..*</td>
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<td style="vertical-align: top; text-align : left; background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/>
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<td style="vertical-align: top; text-align : left; background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/>
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</tr>
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<tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: #F7F7F7;">
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<td style="vertical-align: top; text-align : left; background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck00.png)" class="hierarchy">
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<img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/>
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<img src="tbl_vjoin_end.png" alt="." style="background-color: inherit" class="hierarchy"/>
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<img src="icon_primitive.png" alt="." style="background-color: #F7F7F7; background-color: inherit" title="Primitive Data Type" class="hierarchy"/>
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<span title="If a value is an exceptional value (NULL-value), this specifies in what way and why proper information is missing.">nullFlavor</span>
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<a name="ANY.nullFlavor"> </a>
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</td>
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<td style="vertical-align: top; text-align : left; background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/>
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<td style="vertical-align: top; text-align : left; background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">0..1</td>
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<td style="vertical-align: top; text-align : left; background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">
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<a href="nulldatatypes.html#code">code</a>
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</td>
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<td style="vertical-align: top; text-align : left; background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">
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<span style="font-weight:bold">Binding: </span>
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<a href="ANY.nullFlavor/something.html">something</a> (
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<a href="nullterminologies.html#required" title="To be conformant, the concept in this element SHALL be from the specified value set.">required</a>)
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</td>
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</tr>
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<tr>
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<td colspan="5" class="hierarchy">
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<br/>
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<a href="nullformats.html#table" title="Legend for this format">
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<img src="nullhelp16.png" alt="doco" style="background-color: inherit"/> Documentation for this format
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</a>
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</td>
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</tr>
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</table>
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</div>
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</text>
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<extension url="http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace">
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<valueUri value="urn:hl7-org:v3"/>
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</extension>
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<url value="http://hl7.org/fhir/cda/StructureDefinition/ANY"/>
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<name value="ANY"/>
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<title value="ANY: DataValue (V3 Data Type)"/>
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<status value="active"/>
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<experimental value="false"/>
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<publisher value="HL7"/>
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<description value="Defines the basic properties of every data value. This is an abstract type, meaning that no value can be just a data value without belonging to any concrete type. Every concrete type is a specialization of this general abstract DataValue type."/>
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<mapping>
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<identity value="rim"/>
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<uri value="http://hl7.org/v3"/>
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<name value="RIM Mapping"/>
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</mapping>
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<kind value="logical"/>
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<abstract value="true"/>
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<type value="ANY"/>
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<baseDefinition value="http://hl7.org/fhir/StructureDefinition/Element"/>
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<derivation value="specialization"/>
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<snapshot>
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<element id="ANY">
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<path value="ANY"/>
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<short value="Base for all elements"/>
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<definition value="Defines the basic properties of every data value. This is an abstract type, meaning that no value can be just a data value without belonging to any concrete type. Every concrete type is a specialization of this general abstract DataValue type."/>
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<min value="1"/>
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<max value="*"/>
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<base>
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<path value="Element"/>
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<min value="0"/>
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<max value="*"/>
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</base>
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<condition value="ele-1"/>
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<constraint>
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<key value="ele-1"/>
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<severity value="error"/>
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<human value="All FHIR elements must have a @value or children"/>
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<expression value="hasValue() or (children().count() > id.count())"/>
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<xpath value="@value|f:*|h:div"/>
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<source value="ANY"/>
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</constraint>
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<isModifier value="false"/>
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<mapping>
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<identity value="rim"/>
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<map value="n/a"/>
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</mapping>
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</element>
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<element id="ANY.id">
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<path value="ANY.id"/>
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<representation value="xmlAttr"/>
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<short value="Unique id for inter-element referencing"/>
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<definition value="Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces."/>
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<min value="0"/>
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<max value="1"/>
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<base>
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<path value="Element.id"/>
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<min value="0"/>
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<max value="1"/>
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</base>
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<type>
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<code>
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<extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-json-type">
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<valueString value="string"/>
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</extension>
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<extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-xml-type">
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<valueString value="xsd:string"/>
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</extension>
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<extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-rdf-type">
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<valueString value="xsd:string"/>
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</extension>
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</code>
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</type>
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<isModifier value="false"/>
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<isSummary value="false"/>
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<mapping>
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<identity value="rim"/>
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<map value="n/a"/>
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</mapping>
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</element>
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<element id="ANY.extension">
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<path value="ANY.extension"/>
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<slicing>
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<discriminator>
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<type value="value"/>
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<path value="url"/>
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</discriminator>
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<description value="Extensions are always sliced by (at least) url"/>
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<rules value="open"/>
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</slicing>
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<short value="Additional content defined by implementations"/>
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<definition value="May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension."/>
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<comment value="There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone."/>
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<alias value="extensions"/>
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<alias value="user content"/>
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<min value="0"/>
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<max value="*"/>
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<base>
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<path value="Element.extension"/>
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<min value="0"/>
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<max value="*"/>
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</base>
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<type>
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<code value="Extension"/>
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</type>
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<isModifier value="false"/>
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<isSummary value="false"/>
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<mapping>
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<identity value="rim"/>
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<map value="n/a"/>
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</mapping>
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</element>
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<element id="ANY.nullFlavor">
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<path value="ANY.nullFlavor"/>
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<representation value="xmlAttr"/>
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<label value="Exceptional Value Detail"/>
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<definition value="If a value is an exceptional value (NULL-value), this specifies in what way and why proper information is missing."/>
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<min value="0"/>
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<max value="1"/>
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<base>
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<path value="ANY.nullFlavor"/>
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<min value="0"/>
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<max value="1"/>
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</base>
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<type>
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<code value="code"/>
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</type>
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<binding>
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<strength value="required"/>
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<valueSet value="http://terminology.hl7.org/ValueSet/v3-NullFlavor"/>
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</binding>
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</element>
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</snapshot>
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<differential>
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<element id="ANY">
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<path value="ANY"/>
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<definition value="Defines the basic properties of every data value. This is an abstract type, meaning that no value can be just a data value without belonging to any concrete type. Every concrete type is a specialization of this general abstract DataValue type."/>
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<min value="1"/>
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<max value="*"/>
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</element>
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<element id="ANY.nullFlavor">
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<path value="ANY.nullFlavor"/>
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<representation value="xmlAttr"/>
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<label value="Exceptional Value Detail"/>
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<definition value="If a value is an exceptional value (NULL-value), this specifies in what way and why proper information is missing."/>
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<min value="0"/>
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<max value="1"/>
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<type>
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<code value="code"/>
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</type>
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<binding>
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<strength value="required"/>
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<valueSet value="http://terminology.hl7.org/ValueSet/v3-NullFlavor"/>
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</binding>
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</element>
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</differential>
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</StructureDefinition>
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@ -0,0 +1,48 @@
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<?xml version="1.0" encoding="utf-8"?>
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<StructureDefinition xmlns="http://hl7.org/fhir">
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<id value="ANY"/>
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<text>
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<status value="generated"/>
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<div xmlns="http://www.w3.org/1999/xhtml">
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<p>Defines the basic properties of every data value. This is an abstract type, meaning that no value can be just a data value without belonging to any concrete type. Every concrete type is a specialization of this general abstract DataValue type.</p>
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</div>
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</text>
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<extension url="http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace">
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<valueUri value="urn:hl7-org:v3"/>
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</extension>
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<url value="http://hl7.org/fhir/cda/StructureDefinition/ANY"/>
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<name value="ANY"/>
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<title value="ANY: DataValue (V3 Data Type)"/>
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<status value="active"/>
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<experimental value="false"/>
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<publisher value="HL7"/>
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<description value="Defines the basic properties of every data value. This is an abstract type, meaning that no value can be just a data value without belonging to any concrete type. Every concrete type is a specialization of this general abstract DataValue type."/>
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<kind value="logical"/>
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<abstract value="true"/>
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<type value="ANY"/>
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<baseDefinition value="http://hl7.org/fhir/StructureDefinition/Element"/>
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<derivation value="specialization"/>
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<differential>
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<element id="ANY">
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<path value="ANY"/>
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<definition value="Defines the basic properties of every data value. This is an abstract type, meaning that no value can be just a data value without belonging to any concrete type. Every concrete type is a specialization of this general abstract DataValue type."/>
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<min value="1"/>
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<max value="*"/>
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</element>
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<element id="ANY.nullFlavor">
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<path value="ANY.nullFlavor"/>
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<representation value="xmlAttr"/>
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<label value="Exceptional Value Detail"/>
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<definition value="If a value is an exceptional value (NULL-value), this specifies in what way and why proper information is missing."/>
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<min value="0"/>
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<max value="1"/>
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<type>
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<code value="code"/>
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</type>
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<binding>
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<strength value="required"/>
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<valueSet value="http://terminology.hl7.org/ValueSet/v3-NullFlavor"/>
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</binding>
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</element>
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</differential>
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</StructureDefinition>
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@ -230,4 +230,5 @@
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<test gen="true" id="au2"/>
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<test gen="true" id="au3"/>
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<test gen="true" id="dv1"/>
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<test gen="true" id="logical1"/>
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</snapshot-generation-tests>
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