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org.hl7.fhir.core
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Release new version

This commit is contained in:
Grahame Grieve 2019-11-09 08:07:56 +11:00
parent d520d35426
commit 7a9bdd0cfc
1 changed files with 10 additions and 1 deletions
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11
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/importers/Mimic14Importer.java
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@ -808,6 +808,7 @@ public class Mimic14Importer {
bnd.setTimestamp(date); bnd.setTimestamp(date);
csv.readHeaders(); csv.readHeaders();
int t = 0; int t = 0;
int fc = 1;
while (csv.line()) { while (csv.line()) {
t++; t++;
Patient pat = patients.get(csv.cell("subject_id")); Patient pat = patients.get(csv.cell("subject_id"));
@ -853,11 +854,19 @@ public class Mimic14Importer {
obs.addPerformer().setReference("PractitionerRole/"+prr.getId()); obs.addPerformer().setReference("PractitionerRole/"+prr.getId());
bnd.addEntry().setResource(obs); bnd.addEntry().setResource(obs);
if (bnd.getEntry().size() > 100000) {
new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.changeFileExt(dest, ""+Integer.toString(fc)+".json")), bnd);
fc++;
bnd = new Bundle();
bnd.setId("chart-events");
bnd.setType(BundleType.COLLECTION);
bnd.setTimestamp(date);
}
} }
} }
System.out.println(Integer.toString(t)+" found"); System.out.println(Integer.toString(t)+" found");
csv.close(); csv.close();
new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(dest), bnd); new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.changeFileExt(dest, ""+Integer.toString(fc)+".json")), bnd);
} }
private Coding loincCoding(String loinc) { private Coding loincCoding(String loinc) {