fix pr comments
This commit is contained in:
Itay Goren
parent
0c1c61b275
commit
84e55aa825
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@ -14,93 +14,15 @@ public class MedicationRequest10_40Test {
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@Test
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@DisplayName("Test 10_40 MedicationRequest conversion")
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public void testMedicationRequestConversion() throws IOException {
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String dstu2_string =
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"{'resourceType': 'MedicationOrder',"+
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" 'dateWritten': '2016-11-13',"+
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" 'status': 'active',"+
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" 'id': 'T5YI1tCzs--JEvCICFbx8zgB',"+
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" 'identifier': [{'use': 'usual',"+
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" 'system': 'urn:oid:1.2.840.114350.1.13.0.1.7.2.798268',"+
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" 'value': '988736'},"+
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" {'use': 'usual',"+
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" 'system': 'urn:oid:1.2.840.114350.1.13.0.1.7.3.798268.801',"+
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" 'value': '988736:2150291843'}],"+
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" 'patient': {'display': 'Jason Argonaut',"+
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" 'reference': 'https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Patient/Tbt3KuCY0B5PSrJvCu2j-PlK.aiHsu2xUjUM8bWpetXoB'},"+
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" 'prescriber': {'display': 'Historical Provider, MD',"+
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" 'reference': 'https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Practitioner/T-kmjPGEVPAmnBfmx56HsKgB'},"+
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" 'medicationReference': {'display': 'amitriptyline 10 MG tablet',"+
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" 'reference': 'https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Medication/T0eKLT7EB2ApMM8HCEURdMAB'},"+
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" 'dosageInstruction': [{'text': 'Take 10 mg by mouth nightly.',"+
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" 'asNeededBoolean': False,"+
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" 'route': {'text': 'Oral',"+
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" 'coding': [{'system': 'urn:oid:1.2.840.114350.1.13.0.1.7.4.698288.330',"+
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" 'code': '15',"+
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" 'display': 'Oral'}]},"+
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" 'method': {'text': 'Take',"+
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" 'coding': [{'system': 'urn:oid:1.2.840.114350.1.13.0.1.7.4.798268.8600',"+
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" 'code': '11',"+
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" 'display': 'Take'}]},"+
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" 'timing': {'repeat': {'frequency': 1,"+
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" 'period': 1.0,"+
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" 'periodUnits': 'd',"+
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" 'boundsPeriod': {'start': '2016-11-15T00:00:00Z',"+
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" 'end': '2016-11-23T00:00:00Z'}}},"+
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" 'doseQuantity': {'value': 10.0,"+
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" 'unit': 'mg',"+
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" 'code': 'mg',"+
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" 'system': 'http://unitsofmeasure.org'}}],"+
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" 'dispenseRequest': {'validityPeriod': {'start': '2016-11-15T00:00:00Z',"+
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" 'end': '2016-11-23T00:00:00Z'}}}";
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String r4_expected_string =
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"{\"resourceType\": \"MedicationRequest\","+
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" \"id\": \"T5YI1tCzs--JEvCICFbx8zgB\","+
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" \"identifier\": [{\"use\": \"usual\","+
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" \"system\": \"urn:oid:1.2.840.114350.1.13.0.1.7.2.798268\","+
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" \"value\": \"988736\"},"+
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" {\"use\": \"usual\","+
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" \"system\": \"urn:oid:1.2.840.114350.1.13.0.1.7.3.798268.801\","+
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" \"value\": \"988736:2150291843\"}],"+
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" \"status\": \"active\","+
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" \"intent\": \"order\","+
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" \"medicationReference\": {\"reference\": \"https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Medication/T0eKLT7EB2ApMM8HCEURdMAB\","+
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" \"display\": \"amitriptyline 10 MG tablet\"},"+
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" \"subject\": {\"reference\": \"https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Patient/Tbt3KuCY0B5PSrJvCu2j-PlK.aiHsu2xUjUM8bWpetXoB\","+
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" \"display\": \"Jason Argonaut\"},"+
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" \"authoredOn\": \"2016-11-13T00:00:00\","+
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" \"requester\": {\"reference\": \"https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Practitioner/T-kmjPGEVPAmnBfmx56HsKgB\","+
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" \"display\": \"Historical Provider, MD\"},"+
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" \"dosageInstruction\": [{\"text\": \"Take 10 mg by mouth nightly.\","+
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" \"timing\": {\"repeat\": {\"boundsPeriod\": {\"start\": \"2016-11-15T00:00:00Z\","+
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" \"end\": \"2016-11-23T00:00:00Z\"},"+
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" \"count\": 0,"+
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" \"frequency\": 1,"+
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" \"frequencyMax\": 0,"+
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" \"period\": 1.0,"+
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" \"periodUnit\": \"d\"}},"+
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" \"asNeededBoolean\": \"False\","+
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" \"route\": {\"coding\": [{\"system\": \"urn:oid:1.2.840.114350.1.13.0.1.7.4.698288.330\","+
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" \"code\": \"15\","+
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" \"display\": \"Oral\"}],"+
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" \"text\": \"Oral\"},"+
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" \"method\": {\"coding\": [{\"system\": \"urn:oid:1.2.840.114350.1.13.0.1.7.4.798268.8600\","+
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" \"code\": \"11\","+
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" \"display\": \"Take\"}],"+
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" \"text\": \"Take\"},"+
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" \"doseAndRate\": [{\"doseQuantity\": {\"value\": 10.0,"+
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" \"unit\": \"mg\","+
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" \"system\": \"http://unitsofmeasure.org\","+
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" \"code\": \"mg\"}}]}],"+
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" \"dispenseRequest\": {\"validityPeriod\": {\"start\": \"2016-11-15T00:00:00Z\","+
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" \"end\": \"2016-11-23T00:00:00Z\"}}}";
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InputStream dstu2_input = this.getClass().getResourceAsStream("/example_medication_request_10.json");
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InputStream r4_exepected_input = this.getClass().getResourceAsStream("/example_medication_request_40.json");
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InputStream input = org.apache.commons.io.IOUtils.toInputStream(dstu2_string, "UTF-8");
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org.hl7.fhir.dstu2.model.MedicationOrder dstu2 = (org.hl7.fhir.dstu2.model.MedicationOrder) new org.hl7.fhir.dstu2.formats.JsonParser().parse(input);
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org.hl7.fhir.dstu2.model.MedicationOrder dstu2 = (org.hl7.fhir.dstu2.model.MedicationOrder) new org.hl7.fhir.dstu2.formats.JsonParser().parse(dstu2_input);
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VersionConvertorAdvisor40 advisor = new IGR2ConvertorAdvisor();
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org.hl7.fhir.r4.model.Resource r4_actual = VersionConvertor_10_40.convertResource(dstu2, advisor);
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org.hl7.fhir.r4.formats.JsonParser r4_parser = new org.hl7.fhir.r4.formats.JsonParser();
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org.hl7.fhir.r4.model.Resource r4_expected = r4_parser.parse(r4_expected_string);
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org.hl7.fhir.r4.model.Resource r4_expected = r4_parser.parse(r4_exepected_input);
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Assertions.assertTrue(r4_expected.equalsDeep(r4_actual),
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"Failed comparing\n" + r4_parser.composeString(r4_actual) + "\nand\n" + r4_parser.composeString(r4_expected));
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@ -0,0 +1,37 @@
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{"resourceType": "MedicationOrder",
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"dateWritten": "2016-11-13",
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"status": "active",
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"id": "T5YI1tCzs--JEvCICFbx8zgB",
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"identifier": [{"use": "usual",
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"system": "urn:oid:1.2.840.114350.1.13.0.1.7.2.798268",
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"value": "988736"},
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{"use": "usual",
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"system": "urn:oid:1.2.840.114350.1.13.0.1.7.3.798268.801",
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"value": "988736:2150291843"}],
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"patient": {"display": "Jason Argonaut",
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"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Patient/Tbt3KuCY0B5PSrJvCu2j-PlK.aiHsu2xUjUM8bWpetXoB"},
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"prescriber": {"display": "Historical Provider, MD",
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"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Practitioner/T-kmjPGEVPAmnBfmx56HsKgB"},
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"medicationReference": {"display": "amitriptyline 10 MG tablet",
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"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Medication/T0eKLT7EB2ApMM8HCEURdMAB"},
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"dosageInstruction": [{"text": "Take 10 mg by mouth nightly.",
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"asNeededBoolean": "False",
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"route": {"text": "Oral",
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"coding": [{"system": "urn:oid:1.2.840.114350.1.13.0.1.7.4.698288.330",
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"code": "15",
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"display": "Oral"}]},
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"method": {"text": "Take",
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"coding": [{"system": "urn:oid:1.2.840.114350.1.13.0.1.7.4.798268.8600",
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"code": "11",
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"display": "Take"}]},
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"timing": {"repeat": {"frequency": 1,
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"period": 1.0,
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"periodUnits": "d",
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"boundsPeriod": {"start": "2016-11-15T00:00:00Z",
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"end": "2016-11-23T00:00:00Z"}}},
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"doseQuantity": {"value": 10.0,
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"unit": "mg",
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"code": "mg",
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"system": "http://unitsofmeasure.org"}}],
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"dispenseRequest": {"validityPeriod": {"start": "2016-11-15T00:00:00Z",
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"end": "2016-11-23T00:00:00Z"}}}
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@ -0,0 +1,40 @@
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{"resourceType": "MedicationRequest",
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"id": "T5YI1tCzs--JEvCICFbx8zgB",
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"identifier": [{"use": "usual",
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"system": "urn:oid:1.2.840.114350.1.13.0.1.7.2.798268",
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"value": "988736"},
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{"use": "usual",
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"system": "urn:oid:1.2.840.114350.1.13.0.1.7.3.798268.801",
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"value": "988736:2150291843"}],
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"status": "active",
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"intent": "order",
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"medicationReference": {"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Medication/T0eKLT7EB2ApMM8HCEURdMAB",
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"display": "amitriptyline 10 MG tablet"},
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"subject": {"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Patient/Tbt3KuCY0B5PSrJvCu2j-PlK.aiHsu2xUjUM8bWpetXoB",
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"display": "Jason Argonaut"},
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"authoredOn": "2016-11-13T00:00:00+02:00",
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"requester": {"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Practitioner/T-kmjPGEVPAmnBfmx56HsKgB",
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"display": "Historical Provider, MD"},
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"dosageInstruction": [{"text": "Take 10 mg by mouth nightly.",
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"timing": {"repeat": {"boundsPeriod": {"start": "2016-11-15T00:00:00Z",
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"end": "2016-11-23T00:00:00Z"},
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"count": 0,
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"frequency": 1,
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"frequencyMax": 0,
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"period": 1.0,
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"periodUnit": "d"}},
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"asNeededBoolean": "False",
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"route": {"coding": [{"system": "urn:oid:1.2.840.114350.1.13.0.1.7.4.698288.330",
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"code": "15",
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"display": "Oral"}],
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"text": "Oral"},
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"method": {"coding": [{"system": "urn:oid:1.2.840.114350.1.13.0.1.7.4.798268.8600",
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"code": "11",
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"display": "Take"}],
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"text": "Take"},
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"doseAndRate": [{"doseQuantity": {"value": 10.0,
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"unit": "mg",
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"system": "http://unitsofmeasure.org",
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"code": "mg"}}]}],
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"dispenseRequest": {"validityPeriod": {"start": "2016-11-15T00:00:00Z",
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"end": "2016-11-23T00:00:00Z"}}}
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