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org.hl7.fhir.core
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Tests + start refactor

This commit is contained in:
dotasek 2023-06-02 18:00:26 -04:00
parent 72eee9cab7
commit 949a27f4e6
19 changed files with 788 additions and 84 deletions
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140
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/ValidatorCli.java
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@ -9,8 +9,6 @@ import java.util.ArrayList;
import java.util.List;
import java.util.Locale;
import org.hl7.fhir.convertors.loaders.loaderR5.R4BToR5Loader;
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.
@ -82,6 +80,7 @@ import org.hl7.fhir.utilities.settings.FhirSettings;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ComparisonService;
import org.hl7.fhir.validation.cli.services.ValidationService;
import org.hl7.fhir.validation.cli.tasks.*;
import org.hl7.fhir.validation.cli.utils.Display;
import org.hl7.fhir.validation.cli.utils.EngineMode;
import org.hl7.fhir.validation.cli.utils.Params;
@ -120,7 +119,34 @@ public class ValidatorCli {
private static ValidationService validationService = new ValidationService();
public static void main(String[] args) throws Exception {
protected ValidationService myValidationService;
final List<CliTask> cliTasks;
final CliTask defaultCliTask = new ValidateTask();
protected ValidatorCli(ValidationService validationService) {
myValidationService = validationService;
cliTasks = getCliTasks();
}
protected List<CliTask> getCliTasks() {
return List.of(
new CompileTask(),
new FhirpathTask(),
new InstallTask(),
new LangTransformTask(),
new NarrativeTask(),
new ScanTask(),
new SnapshotTask(),
new SpecialTask(),
new SpreadsheetTask(),
new TransformTask(),
new VersionTask(),
defaultCliTask);
}
protected void readParamsAndExecuteTask(CliContext cliContext, String[] args) throws Exception {
TimeTracker tt = new TimeTracker();
TimeTracker.Session tts = tt.start("Loading");
@ -130,8 +156,6 @@ public class ValidatorCli {
Display.displayVersion();
Display.displaySystemInfo();
CliContext cliContext = Params.loadCliContext(args);
if (cliContext.getFhirSettingsFile() != null) {
FhirSettings.setExplicitFilePath(cliContext.getFhirSettingsFile());
}
@ -139,33 +163,24 @@ public class ValidatorCli {
FileFormat.checkCharsetAndWarnIfNotUTF8(System.out);
if (shouldDisplayHelpToUser(args)) {
Display.displayHelpDetails();
Display.displayHelpDetails("help.txt");
} else if (Params.hasParam(args, Params.COMPARE)) {
if (destinationDirectoryValid(Params.getParam(args, Params.DESTINATION))) {
doLeftRightComparison(args, cliContext, tt);
}
} else if (Params.hasParam(args, Params.TEST) || Params.hasParam(args, Params.TX_TESTS)) {
parseTestParamsAndExecute(args);
} else if (Params.hasParam(args, Params.SPECIAL)) {
executeSpecial(args);
} else {
}
else {
Display.printCliArgumentsAndInfo(args);
doValidation(tt, tts, cliContext);
doValidation(tt, tts, cliContext, args);
}
}
private static void executeSpecial(String[] args) throws JsonException, IOException {
String specialMode = Params.getParam(args, Params.SPECIAL);
if ("r4r5tests".equals(specialMode)) {
final String target = Params.getParam(args, Params.TARGET);
final String source = Params.getParam(args, Params.SOURCE);
final String filter = Params.getParam(args, Params.FILTER);
if (new File(target).exists()) {
new R4R5MapTester().testMaps(target, source, filter);
}
} else {
System.out.println("Unknown SpecialMode "+specialMode);
}
public static void main(String[] args) throws Exception {
final ValidatorCli validatorCli = new ValidatorCli(validationService);
final CliContext cliContext = Params.loadCliContext(args);
validatorCli.readParamsAndExecuteTask(cliContext, args);
}
private static void setJavaSystemProxyParamsFromParams(String[] args) {
@ -285,6 +300,7 @@ public class ValidatorCli {
}
private static boolean shouldDisplayHelpToUser(String[] args) {
String helpTarget = Params.getParam(args, Params.HELP);
return (args.length == 0
|| Params.hasParam(args, Params.HELP)
|| Params.hasParam(args, "?")
@ -304,10 +320,33 @@ public class ValidatorCli {
ComparisonService.doLeftRightComparison(args, Params.getParam(args, Params.DESTINATION), validator);
}
private static void doValidation(TimeTracker tt, TimeTracker.Session tts, CliContext cliContext) throws Exception {
private void doValidation(TimeTracker tt, TimeTracker.Session tts, CliContext cliContext, String[] params) throws Exception {
if (cliContext.getSv() == null) {
cliContext.setSv(validationService.determineVersion(cliContext));
cliContext.setSv(myValidationService.determineVersion(cliContext));
}
CliTask cliTask = null;
for(CliTask candidateTask : cliTasks) {
if (candidateTask.shouldExecuteTask(cliContext, params)) {
cliTask = candidateTask;
}
}
if (cliTask == null)
cliTask = defaultCliTask;
if (cliTask instanceof ValidationServiceTask) {
ValidationEngine validationEngine = getValidationEngine(tt, cliContext);
tts.end();
((ValidationServiceTask) cliTask).executeTask(myValidationService, validationEngine, cliContext, params, tt, tts);
} else if (cliTask instanceof StandaloneTask) {
((StandaloneTask) cliTask).executeTask(cliContext,params,tt,tts);
}
System.out.println("Done. " + tt.report()+". Max Memory = "+Utilities.describeSize(Runtime.getRuntime().maxMemory()));
}
private ValidationEngine getValidationEngine(TimeTracker tt, CliContext cliContext) throws Exception {
ValidationEngine validationEngine;
System.out.println(" Locale: "+Locale.getDefault().getDisplayCountry()+"/"+Locale.getDefault().getCountry());
if (cliContext.getJurisdiction() == null) {
System.out.println(" Jurisdiction: None specified (locale = "+Locale.getDefault().getCountry()+")");
@ -320,57 +359,12 @@ public class ValidatorCli {
// Comment this out because definitions filename doesn't necessarily contain version (and many not even be 14 characters long).
// Version gets spit out a couple of lines later after we've loaded the context
String definitions = "dev".equals(cliContext.getSv()) ? "hl7.fhir.r5.core#current" : VersionUtilities.packageForVersion(cliContext.getSv()) + "#" + VersionUtilities.getCurrentVersion(cliContext.getSv());
ValidationEngine validator = validationService.initializeValidator(cliContext, definitions, tt);
tts.end();
switch (cliContext.getMode()) {
case TRANSFORM:
validationService.transform(cliContext, validator);
break;
case COMPILE:
validationService.compile(cliContext, validator);
break;
case NARRATIVE:
validationService.generateNarrative(cliContext, validator);
break;
case SNAPSHOT:
validationService.generateSnapshot(cliContext, validator);
break;
case INSTALL:
validationService.install(cliContext, validator);
break;
case SPREADSHEET:
validationService.generateSpreadsheet(cliContext, validator);
break;
case CONVERT:
validationService.convertSources(cliContext, validator);
break;
case FHIRPATH:
validationService.evaluateFhirpath(cliContext, validator);
break;
case VERSION:
validationService.transformVersion(cliContext, validator);
break;
case LANG_TRANSFORM:
validationService.transformLang(cliContext, validator);
break;
case VALIDATION:
case SCAN:
default:
for (String s : cliContext.getProfiles()) {
if (!validator.getContext().hasResource(StructureDefinition.class, s) && !validator.getContext().hasResource(ImplementationGuide.class, s)) {
System.out.println(" Fetch Profile from " + s);
validator.loadProfile(cliContext.getLocations().getOrDefault(s, s));
validationEngine = myValidationService.initializeValidator(cliContext, definitions, tt);
return validationEngine;
}
}
System.out.println("Validating");
if (cliContext.getMode() == EngineMode.SCAN) {
protected void validateScan(CliContext cliContext, ValidationEngine validator) throws Exception {
Scanner validationScanner = new Scanner(validator.getContext(), validator.getValidator(null), validator.getIgLoader(), validator.getFhirPathEngine());
validationScanner.validateScan(cliContext.getOutput(), cliContext.getSources());
} else {
validationService.validateSources(cliContext, validator);
}
break;
}
System.out.println("Done. " + tt.report()+". Max Memory = "+Utilities.describeSize(Runtime.getRuntime().maxMemory()));
}
}

20
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/tasks/CliTask.java Normal file
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@ -0,0 +1,20 @@
package org.hl7.fhir.validation.cli.tasks;
import lombok.Getter;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.cli.model.CliContext;
import java.io.IOException;
public abstract class CliTask {
public abstract String getName();
public final String getTaskParam() {
return "-" + getName();
}
public abstract boolean shouldExecuteTask(CliContext cliContext, String[] args);
public abstract void printHelp(java.io.PrintStream out);
}

34
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/tasks/CompileTask.java Normal file
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@ -0,0 +1,34 @@
package org.hl7.fhir.validation.cli.tasks;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.Scanner;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ValidationService;
import org.hl7.fhir.validation.cli.utils.EngineMode;
import java.io.PrintStream;
public class CompileTask extends ValidationServiceTask {
@Override
public String getName() {
return "compile";
}
@Override
public boolean shouldExecuteTask(CliContext cliContext, String[] args) {
return cliContext.getMode() == EngineMode.COMPILE;
}
@Override
public void printHelp(PrintStream out) {
}
@Override
public void executeTask(ValidationService validationService, ValidationEngine validationEngine, CliContext cliContext, String[] args, TimeTracker tt, TimeTracker.Session tts) throws Exception {
validationService.compile(cliContext, validationEngine);
}
}

33
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/tasks/FhirpathTask.java Normal file
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@ -0,0 +1,33 @@
package org.hl7.fhir.validation.cli.tasks;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ValidationService;
import org.hl7.fhir.validation.cli.utils.EngineMode;
import java.io.PrintStream;
public class FhirpathTask extends ValidationServiceTask {
@Override
public String getName() {
return "fhirpath";
}
@Override
public boolean shouldExecuteTask(CliContext cliContext, String[] args) {
return cliContext.getMode() == EngineMode.FHIRPATH;
}
@Override
public void printHelp(PrintStream out) {
}
@Override
public void executeTask(ValidationService validationService, ValidationEngine validationEngine, CliContext cliContext, String[] args, TimeTracker tt, TimeTracker.Session tts) throws Exception {
validationService.evaluateFhirpath(cliContext, validationEngine);
}
}

32
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/tasks/InstallTask.java Normal file
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@ -0,0 +1,32 @@
package org.hl7.fhir.validation.cli.tasks;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ValidationService;
import org.hl7.fhir.validation.cli.utils.EngineMode;
import java.io.PrintStream;
public class InstallTask extends ValidationServiceTask {
@Override
public String getName() {
return "install";
}
@Override
public boolean shouldExecuteTask(CliContext cliContext, String[] args) {
return cliContext.getMode() == EngineMode.INSTALL;
}
@Override
public void printHelp(PrintStream out) {
}
@Override
public void executeTask(ValidationService validationService, ValidationEngine validationEngine, CliContext cliContext, String[] args, TimeTracker tt, TimeTracker.Session tts) throws Exception {
validationService.install(cliContext, validationEngine);
}
}

33
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/tasks/LangTransformTask.java Normal file
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@ -0,0 +1,33 @@
package org.hl7.fhir.validation.cli.tasks;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ValidationService;
import org.hl7.fhir.validation.cli.utils.EngineMode;
import java.io.PrintStream;
public class LangTransformTask extends ValidationServiceTask {
@Override
public String getName() {
return "lang-transform";
}
@Override
public boolean shouldExecuteTask(CliContext cliContext, String[] args) {
return cliContext.getMode() == EngineMode.LANG_TRANSFORM;
}
@Override
public void printHelp(PrintStream out) {
}
@Override
public void executeTask(ValidationService validationService, ValidationEngine validationEngine, CliContext cliContext, String[] args, TimeTracker tt, TimeTracker.Session tts) throws Exception {
validationService.transformLang(cliContext, validationEngine);
}
}

33
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/tasks/NarrativeTask.java Normal file
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@ -0,0 +1,33 @@
package org.hl7.fhir.validation.cli.tasks;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ValidationService;
import org.hl7.fhir.validation.cli.utils.EngineMode;
import java.io.PrintStream;
public class NarrativeTask extends ValidationServiceTask {
@Override
public String getName() {
return "narrative";
}
@Override
public boolean shouldExecuteTask(CliContext cliContext, String[] args) {
return cliContext.getMode() == EngineMode.NARRATIVE;
}
@Override
public void printHelp(PrintStream out) {
}
@Override
public void executeTask(ValidationService validationService, ValidationEngine validationEngine, CliContext cliContext, String[] args, TimeTracker tt, TimeTracker.Session tts) throws Exception {
validationService.generateNarrative(cliContext, validationEngine);
}
}

36
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/tasks/ScanTask.java Normal file
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@ -0,0 +1,36 @@
package org.hl7.fhir.validation.cli.tasks;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.Scanner;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ValidationService;
import org.hl7.fhir.validation.cli.utils.EngineMode;
import java.io.PrintStream;
public class ScanTask extends ValidationServiceTask {
@Override
public String getName() {
return "scan";
}
@Override
public boolean shouldExecuteTask(CliContext cliContext, String[] args) {
return cliContext.getMode() == EngineMode.SCAN;
}
@Override
public void printHelp(PrintStream out) {
}
@Override
public void executeTask(ValidationService validationService, ValidationEngine validationEngine, CliContext cliContext, String[] args, TimeTracker tt, TimeTracker.Session tts) throws Exception {
Scanner validationScanner = new Scanner(validationEngine.getContext(), validationEngine.getValidator(null), validationEngine.getIgLoader(), validationEngine.getFhirPathEngine());
validationScanner.validateScan(cliContext.getOutput(), cliContext.getSources());
}
}

33
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/tasks/SnapshotTask.java Normal file
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@ -0,0 +1,33 @@
package org.hl7.fhir.validation.cli.tasks;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ValidationService;
import org.hl7.fhir.validation.cli.utils.EngineMode;
import java.io.PrintStream;
public class SnapshotTask extends ValidationServiceTask {
@Override
public String getName() {
return "snapshot";
}
@Override
public boolean shouldExecuteTask(CliContext cliContext, String[] args) {
return cliContext.getMode() == EngineMode.SNAPSHOT;
}
@Override
public void printHelp(PrintStream out) {
}
@Override
public void executeTask(ValidationService validationService, ValidationEngine validationEngine, CliContext cliContext, String[] args, TimeTracker tt, TimeTracker.Session tts) throws Exception {
validationService.generateSnapshot(cliContext, validationEngine);
}
}

41
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/tasks/SpecialTask.java Normal file
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@ -0,0 +1,41 @@
package org.hl7.fhir.validation.cli.tasks;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.utils.Params;
import org.hl7.fhir.validation.special.R4R5MapTester;
import java.io.File;
import java.io.PrintStream;
public class SpecialTask extends StandaloneTask{
@Override
public String getName() {
return "special";
}
@Override
public boolean shouldExecuteTask(CliContext cliContext, String[] args) {
return Params.hasParam(args, Params.SPECIAL);
}
@Override
public void printHelp(PrintStream out) {
}
@Override
public void executeTask(CliContext cliContext, String[] args, TimeTracker tt, TimeTracker.Session tts) throws Exception {
String specialMode = Params.getParam(args, Params.SPECIAL);
if ("r4r5tests".equals(specialMode)) {
final String target = Params.getParam(args, Params.TARGET);
final String source = Params.getParam(args, Params.SOURCE);
final String filter = Params.getParam(args, Params.FILTER);
if (new File(target).exists()) {
new R4R5MapTester().testMaps(target, source, filter);
}
} else {
System.out.println("Unknown SpecialMode "+specialMode);
}
}
}

33
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/tasks/SpreadsheetTask.java Normal file
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@ -0,0 +1,33 @@
package org.hl7.fhir.validation.cli.tasks;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ValidationService;
import org.hl7.fhir.validation.cli.utils.EngineMode;
import java.io.PrintStream;
public class SpreadsheetTask extends ValidationServiceTask {
@Override
public String getName() {
return "spreadsheet";
}
@Override
public boolean shouldExecuteTask(CliContext cliContext, String[] args) {
return cliContext.getMode() == EngineMode.SPREADSHEET;
}
@Override
public void printHelp(PrintStream out) {
}
@Override
public void executeTask(ValidationService validationService, ValidationEngine validationEngine, CliContext cliContext, String[] args, TimeTracker tt, TimeTracker.Session tts) throws Exception {
validationService.generateSpreadsheet(cliContext, validationEngine);
}
}

14
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/tasks/StandaloneTask.java Normal file
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@ -0,0 +1,14 @@
package org.hl7.fhir.validation.cli.tasks;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ValidationService;
public abstract class StandaloneTask extends CliTask{
public abstract void executeTask(CliContext cliContext, String[] args, TimeTracker tt, TimeTracker.Session tts) throws Exception;
}

33
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/tasks/TransformTask.java Normal file
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@ -0,0 +1,33 @@
package org.hl7.fhir.validation.cli.tasks;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ValidationService;
import org.hl7.fhir.validation.cli.utils.EngineMode;
import java.io.PrintStream;
public class TransformTask extends ValidationServiceTask {
@Override
public String getName() {
return "transform";
}
@Override
public boolean shouldExecuteTask(CliContext cliContext, String[] args) {
return cliContext.getMode() == EngineMode.TRANSFORM;
}
@Override
public void printHelp(PrintStream out) {
}
@Override
public void executeTask(ValidationService validationService, ValidationEngine validationEngine, CliContext cliContext, String[] args, TimeTracker tt, TimeTracker.Session tts) throws Exception {
validationService.transform(cliContext, validationEngine);
}
}

44
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/tasks/ValidateTask.java Normal file
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@ -0,0 +1,44 @@
package org.hl7.fhir.validation.cli.tasks;
import org.hl7.fhir.r5.model.ImplementationGuide;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ValidationService;
import java.io.PrintStream;
public class ValidateTask extends ValidationServiceTask {
@Override
public String getName() {
return "validate";
}
@Override
public boolean shouldExecuteTask(CliContext cliContext, String[] args) {
// There is no explicit way to trigger a validation task.
// It is the default task.
return false;
}
@Override
public void printHelp(PrintStream out) {
}
@Override
public void executeTask(ValidationService validationService, ValidationEngine validationEngine, CliContext cliContext, String[] args, TimeTracker tt, TimeTracker.Session tts) throws Exception {
for (String s : cliContext.getProfiles()) {
if (!validationEngine.getContext().hasResource(StructureDefinition.class, s) && !validationEngine.getContext().hasResource(ImplementationGuide.class, s)) {
System.out.println(" Fetch Profile from " + s);
validationEngine.loadProfile(cliContext.getLocations().getOrDefault(s, s));
}
}
System.out.println("Validating");
validationService.validateSources(cliContext, validationEngine);
}
}

15
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/tasks/ValidationServiceTask.java Normal file
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@ -0,0 +1,15 @@
package org.hl7.fhir.validation.cli.tasks;
import lombok.Getter;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ValidationService;
public abstract class ValidationServiceTask extends CliTask{
public abstract void executeTask(ValidationService validationService, ValidationEngine validationEngine, CliContext cliContext, String[] args, org.hl7.fhir.utilities.TimeTracker tt, TimeTracker.Session tts) throws Exception;
}

33
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/tasks/VersionTask.java Normal file
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@ -0,0 +1,33 @@
package org.hl7.fhir.validation.cli.tasks;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ValidationService;
import org.hl7.fhir.validation.cli.utils.EngineMode;
import java.io.PrintStream;
public class VersionTask extends ValidationServiceTask {
@Override
public String getName() {
return "to-version";
}
@Override
public boolean shouldExecuteTask(CliContext cliContext, String[] args) {
return cliContext.getMode() == EngineMode.VERSION;
}
@Override
public void printHelp(PrintStream out) {
}
@Override
public void executeTask(ValidationService validationService, ValidationEngine validationEngine, CliContext cliContext, String[] args, TimeTracker tt, TimeTracker.Session tts) throws Exception {
validationService.transformVersion(cliContext, validationEngine);
}
}

7
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/cli/utils/Display.java
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@ -5,9 +5,7 @@ import java.io.InputStream;
import org.apache.commons.io.IOUtils;
import org.hl7.fhir.r5.model.Constants;
import org.hl7.fhir.utilities.VersionUtilities;
import org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager;
import org.hl7.fhir.utilities.npm.ToolsVersion;
/**
* Class for displaying output to the cli user.
@ -52,10 +50,11 @@ public class Display {
/**
* Loads the help details from resources/help.txt, and displays them on the command line to the user.
* @param file
*/
public static void displayHelpDetails() {
public static void displayHelpDetails(String file) {
ClassLoader classLoader = Display.class.getClassLoader();
InputStream help = classLoader.getResourceAsStream("help.txt");
InputStream help = classLoader.getResourceAsStream(file);
try {
String data = IOUtils.toString(help, "UTF-8");

244
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/validation/ValidatorCliTests.java Normal file
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@ -0,0 +1,244 @@
package org.hl7.fhir.validation;
import org.apache.commons.compress.archivers.sevenz.CLI;
import org.hl7.fhir.utilities.TimeTracker;
import org.hl7.fhir.validation.cli.model.CliContext;
import org.hl7.fhir.validation.cli.services.ValidationService;
import org.hl7.fhir.validation.cli.tasks.*;
import org.hl7.fhir.validation.cli.utils.Params;
import org.junit.jupiter.api.Test;
import org.junit.jupiter.api.extension.ExtendWith;
import org.mockito.Mock;
import org.mockito.Mockito;
import org.mockito.Spy;
import org.mockito.junit.jupiter.MockitoExtension;
import java.util.List;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.fail;
import static org.mockito.ArgumentMatchers.any;
import static org.mockito.Mockito.*;
@ExtendWith(MockitoExtension.class)
public class ValidatorCliTests {
@Mock
ValidationService validationService;
@Mock
ValidationEngine validationEngine;
@Spy
CompileTask compileTask;
@Spy
FhirpathTask fhirpathTask;
@Spy
InstallTask installTask;
@Spy
LangTransformTask langTransformTask;
@Spy
NarrativeTask narrativeTask;
@Spy
SnapshotTask snapshotTask;
@Spy
SpreadsheetTask spreadsheetTask;
@Spy
TransformTask transformTask;
@Spy
VersionTask versionTask;
@Spy
ValidateTask validateTask;
@Spy
ScanTask scanTask = new ScanTask() {
@Override
public void executeTask(ValidationService validationService, ValidationEngine validationEngine, CliContext cliContext, String[] args, TimeTracker tt, TimeTracker.Session tts) {}
};
@Spy
SpecialTask specialTask = new SpecialTask() {
@Override
public void executeTask(CliContext cliContext, String[] args, TimeTracker tt, TimeTracker.Session tts) {}
};
public ValidatorCli mockValidatorCli() {
ValidatorCli validatorCli = spy(new ValidatorCli(validationService){
protected void validateScan(CliContext cliContext, ValidationEngine validator) {
// DO NOTHING;
}
protected List<CliTask> getCliTasks() {
return List.of(
compileTask,
fhirpathTask,
installTask,
langTransformTask,
narrativeTask,
scanTask,
snapshotTask,
specialTask,
spreadsheetTask,
transformTask,
versionTask,
//validate is the default
validateTask
);
}
});
return validatorCli;
}
public ValidatorCli mockValidatorCliWithService(CliContext cliContext) throws Exception {
when(validationService.determineVersion(Mockito.same(cliContext))).thenReturn("5.0.1");
when(validationService.initializeValidator(Mockito.same(cliContext), anyString(), any(org.hl7.fhir.utilities.TimeTracker.class))).thenReturn(validationEngine);
return mockValidatorCli();
}
@Test
public void testCorrectTasksInValidatorCli() {
ValidatorCli realCli = new ValidatorCli(mock(ValidationService.class));
ValidatorCli mockCli = mockValidatorCli();
List<CliTask> realTasks = realCli.getCliTasks();
List<CliTask> mockTasks = mockCli.getCliTasks();
assertEquals(mockTasks.size(), realTasks.size());
for (int i = 0; i < realTasks.size(); i++) {
assertEquals(mockTasks.get(i).getName(), realTasks.get(i).getName(), "Differing task at index " + i);
}
}
private void assertContainsValidationTask(List<CliTask> tasks, String name) {
for (CliTask task : tasks) {
if (task.getName().equals(name)) {
return;
}
}
fail("Cannot find " + name + " in task list");
}
@Test
public void transformTest() throws Exception {
final String[] args = new String[]{"-transform", "dummyFile.map", "dummySource.json"};
CliContext cliContext = Params.loadCliContext(args);
ValidatorCli cli = mockValidatorCliWithService(cliContext);
cli.readParamsAndExecuteTask(cliContext, args);
Mockito.verify(validationService).determineVersion(same(cliContext));
Mockito.verify(validationService).transform(same(cliContext), same(validationEngine));
}
@Test
public void narrativeTest() throws Exception {
final String[] args = new String[]{"-narrative"};
CliContext cliContext = Params.loadCliContext(args);
ValidatorCli cli = mockValidatorCliWithService(cliContext);
cli.readParamsAndExecuteTask(cliContext, args);
Mockito.verify(validationService).determineVersion(same(cliContext));
Mockito.verify(validationService).generateNarrative(same(cliContext), same(validationEngine));
}
@Test
public void compileTest() throws Exception {
final String[] args = new String[]{"-compile", "dummyMap.map"};
CliContext cliContext = Params.loadCliContext(args);
ValidatorCli cli = mockValidatorCliWithService(cliContext);
cli.readParamsAndExecuteTask(cliContext, args);
Mockito.verify(validationService).determineVersion(same(cliContext));
Mockito.verify(validationService).compile(same(cliContext), same(validationEngine));
}
@Test
public void snapshotTest() throws Exception {
final String[] args = new String[]{"-snapshot"};
CliContext cliContext = Params.loadCliContext(args);
ValidatorCli cli = mockValidatorCliWithService(cliContext);
cli.readParamsAndExecuteTask(cliContext, args);
Mockito.verify(validationService).determineVersion(same(cliContext));
Mockito.verify(validationService).generateSnapshot(same(cliContext), same(validationEngine));
}
@Test
public void installTest() throws Exception {
final String[] args = new String[]{"-install"};
CliContext cliContext = Params.loadCliContext(args);
ValidatorCli cli = mockValidatorCliWithService(cliContext);
cli.readParamsAndExecuteTask(cliContext, args);
Mockito.verify(validationService).determineVersion(same(cliContext));
Mockito.verify(validationService).install(same(cliContext), same(validationEngine));
}
@Test
public void spreadsheetTest() throws Exception {
final String[] args = new String[]{"-spreadsheet"};
CliContext cliContext = Params.loadCliContext(args);
ValidatorCli cli = mockValidatorCliWithService(cliContext);
cli.readParamsAndExecuteTask(cliContext, args);
Mockito.verify(validationService).determineVersion(same(cliContext));
Mockito.verify(validationService).generateSpreadsheet(same(cliContext), same(validationEngine));
}
@Test
public void fhirpathTest() throws Exception {
final String[] args = new String[]{"-fhirpath", "dummyExpression"};
CliContext cliContext = Params.loadCliContext(args);
ValidatorCli cli = mockValidatorCliWithService(cliContext);
cli.readParamsAndExecuteTask(cliContext, args);
Mockito.verify(validationService).determineVersion(same(cliContext));
Mockito.verify(validationService).evaluateFhirpath(same(cliContext), same(validationEngine));
}
@Test
public void versionTest() throws Exception {
final String[] args = new String[]{"-to-version", "1.2.3"};
CliContext cliContext = Params.loadCliContext(args);
ValidatorCli cli = mockValidatorCliWithService(cliContext);
cli.readParamsAndExecuteTask(cliContext, args);
Mockito.verify(validationService).determineVersion(same(cliContext));
Mockito.verify(validationService).transformVersion(same(cliContext), same(validationEngine));
}
@Test
public void langTransformTest() throws Exception {
final String[] args = new String[]{"-lang-transform", "dummyLang"};
CliContext cliContext = Params.loadCliContext(args);
ValidatorCli cli = mockValidatorCliWithService(cliContext);
cli.readParamsAndExecuteTask(cliContext, args);
Mockito.verify(validationService).determineVersion(same(cliContext));
Mockito.verify(validationService).transformLang(same(cliContext), same(validationEngine));
}
@Test
public void defaultTest() throws Exception {
final String[] args = new String[]{"dummyFile.json"};
CliContext cliContext = Params.loadCliContext(args);
ValidatorCli cli = mockValidatorCliWithService(cliContext);
cli.readParamsAndExecuteTask(cliContext, args);
Mockito.verify(validationService).determineVersion(same(cliContext));
Mockito.verify(validationService).validateSources(same(cliContext), same(validationEngine));
}
@Test
public void scanTest() throws Exception {
final String[] args = new String[]{"-scan"};
CliContext cliContext = Params.loadCliContext(args);
ValidatorCli cli = mockValidatorCliWithService(cliContext);
cli.readParamsAndExecuteTask(cliContext, args);
Mockito.verify(validationService).determineVersion(same(cliContext));
Mockito.verify(scanTask).executeTask(same(validationService), same(validationEngine), same(cliContext), eq(args), any(TimeTracker.class), any(TimeTracker.Session.class));
}
@Test
public void specialTest() throws Exception {
final String[] args = new String[]{"-special"};
CliContext cliContext = Params.loadCliContext(args);
ValidatorCli cli = mockValidatorCli();
cli.readParamsAndExecuteTask(cliContext, args);
Mockito.verify(specialTask).executeTask(same(cliContext), eq(args), any(TimeTracker.class), any(TimeTracker.Session.class));
}
}

2
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/validation/cli/utils/DisplayTests.java
View File

@ -23,7 +23,7 @@ public class DisplayTests {
System.setErr(new PrintStream(errContent));
try {
Display.displayHelpDetails();
Display.displayHelpDetails("help.txt");
String output = outContent.toString();