Performance improvements for validation, including -watch engine
This commit is contained in:
Grahame Grieve
parent
2d0dcbb803
commit
99895e7a97
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@ -40,12 +40,12 @@ public class ExtensionExtractor {
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Set<String> ids = new HashSet<>();
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FilesystemPackageCacheManager pcm = new FilesystemPackageCacheManager(true);
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NpmPackage r5 = pcm.loadPackage("hl7.fhir.r5.core", "current");
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CanonicalResourceManager<CodeSystem> cslist = new CanonicalResourceManager<CodeSystem>(true);
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CanonicalResourceManager<CodeSystem> cslist = new CanonicalResourceManager<CodeSystem>(true, false);
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for (String r : r5.listResources("CodeSystem")) {
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CodeSystem cs = (CodeSystem) new JsonParser().parse(r5.load(r));
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cslist.see(cs, null);
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}
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CanonicalResourceManager<ValueSet> vslist = new CanonicalResourceManager<ValueSet>(true);
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CanonicalResourceManager<ValueSet> vslist = new CanonicalResourceManager<ValueSet>(true, false);
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for (String r : r5.listResources("ValueSet")) {
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ValueSet vs = (ValueSet) new JsonParser().parse(r5.load(r));
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vslist.see(vs, null);
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@ -17,15 +17,15 @@ import org.hl7.fhir.utilities.Utilities;
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public class Definitions {
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private CanonicalResourceManager<CodeSystem> codeSystems = new CanonicalResourceManager<>(true);
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private CanonicalResourceManager<ValueSet> valuesets = new CanonicalResourceManager<>(true);
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private CanonicalResourceManager<ConceptMap> conceptMaps = new CanonicalResourceManager<>(true);
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private CanonicalResourceManager<CodeSystem> codeSystems = new CanonicalResourceManager<>(true, false);
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private CanonicalResourceManager<ValueSet> valuesets = new CanonicalResourceManager<>(true, false);
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private CanonicalResourceManager<ConceptMap> conceptMaps = new CanonicalResourceManager<>(true, false);
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private CanonicalResourceManager<CapabilityStatement> statements = new CanonicalResourceManager<>(true);
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private CanonicalResourceManager<StructureDefinition> structures = new CanonicalResourceManager<>(true);
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private CanonicalResourceManager<OperationDefinition> operations = new CanonicalResourceManager<>(true);
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private CanonicalResourceManager<SearchParameter> searchParams = new CanonicalResourceManager<>(true);
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private CanonicalResourceManager<CompartmentDefinition> compartments = new CanonicalResourceManager<>(true);
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private CanonicalResourceManager<CapabilityStatement> statements = new CanonicalResourceManager<>(true, false);
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private CanonicalResourceManager<StructureDefinition> structures = new CanonicalResourceManager<>(true, false);
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private CanonicalResourceManager<OperationDefinition> operations = new CanonicalResourceManager<>(true, false);
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private CanonicalResourceManager<SearchParameter> searchParams = new CanonicalResourceManager<>(true, false);
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private CanonicalResourceManager<CompartmentDefinition> compartments = new CanonicalResourceManager<>(true, false);
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public CanonicalResourceManager<CodeSystem> getCodeSystems() {
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@ -210,27 +210,28 @@ public abstract class BaseWorkerContext extends I18nBase implements IWorkerConte
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protected String version; // although the internal resources are all R5, the version of FHIR they describe may not be
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protected TerminologyClientContext tcc = new TerminologyClientContext();
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private boolean minimalMemory = false;
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private Map<String, Map<String, ResourceProxy>> allResourcesById = new HashMap<String, Map<String, ResourceProxy>>();
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// all maps are to the full URI
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private CanonicalResourceManager<CodeSystem> codeSystems = new CanonicalResourceManager<CodeSystem>(false);
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private CanonicalResourceManager<CodeSystem> codeSystems = new CanonicalResourceManager<CodeSystem>(false, minimalMemory);
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private final Set<String> supportedCodeSystems = new HashSet<String>();
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private final Set<String> unsupportedCodeSystems = new HashSet<String>(); // know that the terminology server doesn't support them
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private CanonicalResourceManager<ValueSet> valueSets = new CanonicalResourceManager<ValueSet>(false);
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private CanonicalResourceManager<ConceptMap> maps = new CanonicalResourceManager<ConceptMap>(false);
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protected CanonicalResourceManager<StructureMap> transforms = new CanonicalResourceManager<StructureMap>(false);
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private CanonicalResourceManager<StructureDefinition> structures = new CanonicalResourceManager<StructureDefinition>(false);
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private final CanonicalResourceManager<Measure> measures = new CanonicalResourceManager<Measure>(false);
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private final CanonicalResourceManager<Library> libraries = new CanonicalResourceManager<Library>(false);
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private CanonicalResourceManager<ImplementationGuide> guides = new CanonicalResourceManager<ImplementationGuide>(false);
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private final CanonicalResourceManager<CapabilityStatement> capstmts = new CanonicalResourceManager<CapabilityStatement>(false);
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private final CanonicalResourceManager<SearchParameter> searchParameters = new CanonicalResourceManager<SearchParameter>(false);
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private final CanonicalResourceManager<Questionnaire> questionnaires = new CanonicalResourceManager<Questionnaire>(false);
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private final CanonicalResourceManager<OperationDefinition> operations = new CanonicalResourceManager<OperationDefinition>(false);
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private final CanonicalResourceManager<PlanDefinition> plans = new CanonicalResourceManager<PlanDefinition>(false);
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private final CanonicalResourceManager<ActorDefinition> actors = new CanonicalResourceManager<ActorDefinition>(false);
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private final CanonicalResourceManager<Requirements> requirements = new CanonicalResourceManager<Requirements>(false);
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private final CanonicalResourceManager<NamingSystem> systems = new CanonicalResourceManager<NamingSystem>(false);
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private CanonicalResourceManager<ValueSet> valueSets = new CanonicalResourceManager<ValueSet>(false, minimalMemory);
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private CanonicalResourceManager<ConceptMap> maps = new CanonicalResourceManager<ConceptMap>(false, minimalMemory);
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protected CanonicalResourceManager<StructureMap> transforms = new CanonicalResourceManager<StructureMap>(false, minimalMemory);
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private CanonicalResourceManager<StructureDefinition> structures = new CanonicalResourceManager<StructureDefinition>(false, minimalMemory);
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private final CanonicalResourceManager<Measure> measures = new CanonicalResourceManager<Measure>(false, minimalMemory);
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private final CanonicalResourceManager<Library> libraries = new CanonicalResourceManager<Library>(false, minimalMemory);
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private CanonicalResourceManager<ImplementationGuide> guides = new CanonicalResourceManager<ImplementationGuide>(false, minimalMemory);
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private final CanonicalResourceManager<CapabilityStatement> capstmts = new CanonicalResourceManager<CapabilityStatement>(false, minimalMemory);
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private final CanonicalResourceManager<SearchParameter> searchParameters = new CanonicalResourceManager<SearchParameter>(false, minimalMemory);
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private final CanonicalResourceManager<Questionnaire> questionnaires = new CanonicalResourceManager<Questionnaire>(false, minimalMemory);
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private final CanonicalResourceManager<OperationDefinition> operations = new CanonicalResourceManager<OperationDefinition>(false, minimalMemory);
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private final CanonicalResourceManager<PlanDefinition> plans = new CanonicalResourceManager<PlanDefinition>(false, minimalMemory);
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private final CanonicalResourceManager<ActorDefinition> actors = new CanonicalResourceManager<ActorDefinition>(false, minimalMemory);
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private final CanonicalResourceManager<Requirements> requirements = new CanonicalResourceManager<Requirements>(false, minimalMemory);
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private final CanonicalResourceManager<NamingSystem> systems = new CanonicalResourceManager<NamingSystem>(false, minimalMemory);
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private Map<String, NamingSystem> systemUrlMap;
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@ -2343,20 +2344,22 @@ public abstract class BaseWorkerContext extends I18nBase implements IWorkerConte
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return binaries.get(binaryKey);
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}
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public void finishLoading() {
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public void finishLoading(boolean genSnapshots) {
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if (!hasResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Base")) {
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cacheResource(ProfileUtilities.makeBaseDefinition(version));
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}
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for (StructureDefinition sd : listStructures()) {
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try {
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if (sd.getSnapshot().isEmpty()) {
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new ContextUtilities(this).generateSnapshot(sd);
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// new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "snapshot", tail(sd.getUrl())+".xml")), sd);
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}
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} catch (Exception e) {
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System.out.println("Unable to generate snapshot for "+tail(sd.getUrl()) +" from "+tail(sd.getBaseDefinition())+" because "+e.getMessage());
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if (logger.isDebugLogging()) {
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e.printStackTrace();
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if(genSnapshots) {
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for (StructureDefinition sd : listStructures()) {
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try {
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if (sd.getSnapshot().isEmpty()) {
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new ContextUtilities(this).generateSnapshot(sd);
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// new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "snapshot", tail(sd.getUrl())+".xml")), sd);
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}
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} catch (Exception e) {
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System.out.println("Unable to generate snapshot @1 for "+tail(sd.getUrl()) +" from "+tail(sd.getBaseDefinition())+" because "+e.getMessage());
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if (logger.isDebugLogging()) {
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e.printStackTrace();
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}
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}
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}
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}
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@ -32,6 +32,7 @@ public class CanonicalResourceManager<T extends CanonicalResource> {
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private String version;
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private String supplements;
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private CanonicalResource resource;
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private boolean hacked;
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public CanonicalResourceProxy(String type, String id, String url, String version, String supplements) {
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super();
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@ -77,6 +78,9 @@ public class CanonicalResourceManager<T extends CanonicalResource> {
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public CanonicalResource getResource() throws FHIRException {
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if (resource == null) {
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resource = loadResource();
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if (hacked) {
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resource.setUrl(url).setVersion(version);
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}
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if (resource instanceof CodeSystem) {
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CodeSystemUtilities.crossLinkCodeSystem((CodeSystem) resource);
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}
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@ -98,7 +102,7 @@ public class CanonicalResourceManager<T extends CanonicalResource> {
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public void hack(String url, String version) {
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this.url = url;
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this.version = version;
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getResource().setUrl(url).setVersion(version);
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this.hacked = true;
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}
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}
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@ -200,18 +204,25 @@ public class CanonicalResourceManager<T extends CanonicalResource> {
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}
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}
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private boolean minimalMemory;
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private boolean enforceUniqueId;
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private List<CachedCanonicalResource<T>> list = new ArrayList<>();
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private Map<String, List<CachedCanonicalResource<T>>> listForId = new HashMap<>();
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private Map<String, List<CachedCanonicalResource<T>>> listForUrl = new HashMap<>();
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private Map<String, CachedCanonicalResource<T>> map = new HashMap<>();
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private Map<String, List<CachedCanonicalResource<T>>> supplements = new HashMap<>(); // general index based on CodeSystem.supplements
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private Map<String, List<CachedCanonicalResource<T>>> listForId;
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private Map<String, List<CachedCanonicalResource<T>>> listForUrl;
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private Map<String, CachedCanonicalResource<T>> map;
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private Map<String, List<CachedCanonicalResource<T>>> supplements; // general index based on CodeSystem.supplements
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private String version; // for debugging purposes
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public CanonicalResourceManager(boolean enforceUniqueId) {
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public CanonicalResourceManager(boolean enforceUniqueId, boolean minimalMemory) {
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super();
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this.enforceUniqueId = enforceUniqueId;
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this.minimalMemory = minimalMemory;
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list = new ArrayList<>();
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listForId = new HashMap<>();
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listForUrl = new HashMap<>();
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map = new HashMap<>();
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supplements = new HashMap<>(); // general index based on CodeSystem.supplements
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}
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@ -242,12 +242,12 @@ public class SimpleWorkerContext extends BaseWorkerContext implements IWorkerCon
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return build(context);
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}
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public SimpleWorkerContext fromPackage(NpmPackage pi, IContextResourceLoader loader) throws IOException, FHIRException {
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public SimpleWorkerContext fromPackage(NpmPackage pi, IContextResourceLoader loader, boolean genSnapshots) throws IOException, FHIRException {
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SimpleWorkerContext context = getSimpleWorkerContextInstance();
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context.setAllowLoadingDuplicates(allowLoadingDuplicates);
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context.version = pi.getNpm().asString("version");
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context.loadFromPackage(pi, loader);
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context.finishLoading();
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context.finishLoading(genSnapshots);
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return build(context);
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}
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@ -667,7 +667,7 @@ public class SimpleWorkerContext extends BaseWorkerContext implements IWorkerCon
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new ContextUtilities(this).generateSnapshot(p);
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} catch (Exception e) {
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// not sure what to do in this case?
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System.out.println("Unable to generate snapshot for "+uri+": "+e.getMessage());
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System.out.println("Unable to generate snapshot @3 for "+uri+": "+e.getMessage());
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if (logger.isDebugLogging()) {
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e.printStackTrace();
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}
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@ -676,6 +676,12 @@ public class SimpleWorkerContext extends BaseWorkerContext implements IWorkerCon
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return r;
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}
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@Override
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public <T extends Resource> T fetchResourceRaw(Class<T> class_, String uri) {
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T r = super.fetchResource(class_, uri);
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return r;
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}
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@Override
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public <T extends Resource> T fetchResource(Class<T> class_, String uri, Resource source) {
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T r = super.fetchResource(class_, uri, source);
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@ -697,7 +703,7 @@ public class SimpleWorkerContext extends BaseWorkerContext implements IWorkerCon
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}
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} catch (Exception e) {
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// not sure what to do in this case?
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System.out.println("Unable to generate snapshot for "+p.getVersionedUrl()+": "+e.getMessage());
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System.out.println("Unable to generate snapshot @4 for "+p.getVersionedUrl()+": "+e.getMessage());
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if (logger.isDebugLogging()) {
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e.printStackTrace();
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}
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@ -161,7 +161,7 @@ public abstract class ParserBase {
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logError(ValidationMessage.NO_RULE_DATE, line, col, name, IssueType.STRUCTURE, context.formatMessage(I18nConstants.THIS_CANNOT_BE_PARSED_AS_A_FHIR_OBJECT_NO_NAME), IssueSeverity.FATAL);
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return null;
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}
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for (StructureDefinition sd : new ContextUtilities(context).allStructures()) {
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for (StructureDefinition sd : context.fetchResourcesByType(StructureDefinition.class)) {
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if (sd.getDerivation() == TypeDerivationRule.SPECIALIZATION && !sd.getUrl().startsWith("http://hl7.org/fhir/StructureDefinition/de-")) {
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if(name.equals(sd.getType()) && (ns == null || ns.equals(FormatUtilities.FHIR_NS)) && !ToolingExtensions.hasExtension(sd, "http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace"))
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return sd;
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@ -126,7 +126,7 @@ public class TestingUtilities extends BaseTestingUtilities {
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public static SimpleWorkerContext getWorkerContext(NpmPackage npmPackage, IWorkerContext.IContextResourceLoader loader) throws Exception {
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SimpleWorkerContext swc = new SimpleWorkerContext.SimpleWorkerContextBuilder().withAllowLoadingDuplicates(true).withUserAgent(TestConstants.USER_AGENT)
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.withTerminologyCachePath(getTerminologyCacheDirectory()).fromPackage(npmPackage, loader);
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.withTerminologyCachePath(getTerminologyCacheDirectory()).fromPackage(npmPackage, loader, true);
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TerminologyCache.setCacheErrors(true);
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return swc;
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}
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@ -31,7 +31,7 @@ public class CanonicalResourceManagerTests {
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@Test
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public void testSingleNoVersion() {
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true);
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true, false);
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ValueSet vs = new ValueSet();
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vs.setId("2345");
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vs.setUrl("http://url/ValueSet/234");
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@ -65,7 +65,7 @@ public class CanonicalResourceManagerTests {
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@Test
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public void testSingleWithVersion() {
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true);
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true, false);
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ValueSet vs = new ValueSet();
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vs.setId("2345");
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vs.setUrl("http://url/ValueSet/234");
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@ -85,7 +85,7 @@ public class CanonicalResourceManagerTests {
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@Test
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public void testSingleWithVersionNotSemVer() {
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true);
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true, false);
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ValueSet vs = new ValueSet();
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vs.setId("2345");
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vs.setUrl("http://url/ValueSet/234");
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@ -103,7 +103,7 @@ public class CanonicalResourceManagerTests {
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@Test
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public void testSingleWithDuplicateIds1() {
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(false);
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(false, false);
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ValueSet vs1 = new ValueSet();
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vs1.setId("2345");
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vs1.setUrl("http://url/ValueSet/234");
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@ -183,7 +183,7 @@ public class CanonicalResourceManagerTests {
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@Test
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public void testSingleWithDuplicateIds2() {
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true);
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true, false);
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ValueSet vs1 = new ValueSet();
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vs1.setId("2345");
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vs1.setUrl("http://url/ValueSet/234");
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@ -246,7 +246,7 @@ public class CanonicalResourceManagerTests {
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@Test
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public void testSingleWithVersions1() {
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true);
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true, false);
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ValueSet vs1 = new ValueSet();
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vs1.setId("2345");
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vs1.setUrl("http://url/ValueSet/234");
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@ -318,7 +318,7 @@ public class CanonicalResourceManagerTests {
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@Test
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public void testSingleWithVersions2() {
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true);
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true, false);
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ValueSet vs1 = new ValueSet();
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vs1.setId("2345");
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vs1.setUrl("http://url/ValueSet/234");
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@ -390,7 +390,7 @@ public class CanonicalResourceManagerTests {
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@Test
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public void testUTG1() {
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(false);
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(false, false);
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ValueSet vs1 = new ValueSet();
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vs1.setId("234");
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vs1.setUrl("http://terminology.hl7.org/ValueSet/234");
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@ -418,7 +418,7 @@ public class CanonicalResourceManagerTests {
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@Test
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public void testUTG2() {
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(false);
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(false, false);
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ValueSet vs1 = new ValueSet();
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vs1.setId("234");
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vs1.setUrl("http://terminology.hl7.org/ValueSet/234");
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@ -444,7 +444,7 @@ public class CanonicalResourceManagerTests {
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@Test
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public void testSingleNoVersionDeferredLoad() {
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true);
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true, false);
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ValueSet vs = new ValueSet();
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vs.setId("2345");
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vs.setUrl("http://url/ValueSet/234");
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@ -479,7 +479,7 @@ public class CanonicalResourceManagerTests {
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@Test
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public void testSingleWithVersionDeferredLoad() {
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true);
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true, false);
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ValueSet vs = new ValueSet();
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vs.setId("2345");
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vs.setUrl("http://url/ValueSet/234");
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@ -500,7 +500,7 @@ public class CanonicalResourceManagerTests {
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@Test
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public void testSingleWithVersionNotSemVerDeferredLoad() {
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true);
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true, false);
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ValueSet vs = new ValueSet();
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vs.setId("2345");
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vs.setUrl("http://url/ValueSet/234");
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@ -519,7 +519,7 @@ public class CanonicalResourceManagerTests {
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@Test
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public void testSingleWithDuplicateIds1DeferredLoad() {
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(false);
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CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(false, false);
|
||||
ValueSet vs1 = new ValueSet();
|
||||
vs1.setId("2345");
|
||||
vs1.setUrl("http://url/ValueSet/234");
|
||||
|
|
@ -601,7 +601,7 @@ public class CanonicalResourceManagerTests {
|
|||
|
||||
@Test
|
||||
public void testSingleWithDuplicateIds2DeferredLoad() {
|
||||
CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true);
|
||||
CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true, false);
|
||||
ValueSet vs1 = new ValueSet();
|
||||
vs1.setId("2345");
|
||||
vs1.setUrl("http://url/ValueSet/234");
|
||||
|
|
@ -666,7 +666,7 @@ public class CanonicalResourceManagerTests {
|
|||
|
||||
@Test
|
||||
public void testSingleWithVersions1DeferredLoad() {
|
||||
CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true);
|
||||
CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true, false);
|
||||
ValueSet vs1 = new ValueSet();
|
||||
vs1.setId("2345");
|
||||
vs1.setUrl("http://url/ValueSet/234");
|
||||
|
|
@ -740,7 +740,7 @@ public class CanonicalResourceManagerTests {
|
|||
|
||||
@Test
|
||||
public void testSingleWithVersions2DeferredLoad() {
|
||||
CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true);
|
||||
CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(true, false);
|
||||
ValueSet vs1 = new ValueSet();
|
||||
vs1.setId("2345");
|
||||
vs1.setUrl("http://url/ValueSet/234");
|
||||
|
|
@ -815,7 +815,7 @@ public class CanonicalResourceManagerTests {
|
|||
@Test
|
||||
public void testPackageSpecificResolution1() {
|
||||
// we add 2 canonicals to the cache with the same identification, but different package information
|
||||
CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(false);
|
||||
CanonicalResourceManager<ValueSet> mrm = new CanonicalResourceManager<>(false, false);
|
||||
ValueSet vs1 = new ValueSet();
|
||||
vs1.setId("2345");
|
||||
vs1.setUrl("http://url/ValueSet/234");
|
||||
|
|
@ -856,7 +856,7 @@ public class CanonicalResourceManagerTests {
|
|||
|
||||
@Test
|
||||
public void testSupplements() {
|
||||
CanonicalResourceManager<CodeSystem> mrm = new CanonicalResourceManager<>(true);
|
||||
CanonicalResourceManager<CodeSystem> mrm = new CanonicalResourceManager<>(true, false);
|
||||
CodeSystem csb1 = new CodeSystem();
|
||||
csb1.setId("2345");
|
||||
csb1.setUrl("http://url/CodeSystem/234");
|
||||
|
|
|
|||
|
|
@ -7,8 +7,6 @@ public class Content {
|
|||
private byte[] focus = null;
|
||||
private Manager.FhirFormat cntType = null;
|
||||
|
||||
|
||||
|
||||
public byte[] getFocus() {
|
||||
return focus;
|
||||
}
|
||||
|
|
@ -21,5 +19,12 @@ public class Content {
|
|||
public void setCntType(Manager.FhirFormat cntType) {
|
||||
this.cntType = cntType;
|
||||
}
|
||||
public String getExampleFileName() {
|
||||
if (cntType != null) {
|
||||
return "file."+cntType.getExtension();
|
||||
} else {
|
||||
return "file.bin";
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -39,12 +39,14 @@ import org.hl7.fhir.utilities.VersionUtilities;
|
|||
import org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager;
|
||||
import org.hl7.fhir.utilities.npm.NpmPackage;
|
||||
import org.hl7.fhir.utilities.turtle.Turtle;
|
||||
import org.hl7.fhir.validation.ValidationEngine.IValidationEngineLoader;
|
||||
import org.hl7.fhir.validation.ValidatorUtils.SourceFile;
|
||||
import org.hl7.fhir.validation.cli.utils.Common;
|
||||
import org.hl7.fhir.validation.cli.utils.VersionSourceInformation;
|
||||
|
||||
import lombok.Getter;
|
||||
|
||||
public class IgLoader {
|
||||
public class IgLoader implements IValidationEngineLoader {
|
||||
|
||||
private static final String[] IGNORED_EXTENSIONS = {"md", "css", "js", "png", "gif", "jpg", "html", "tgz", "pack", "zip"};
|
||||
private static final String[] EXEMPT_FILES = {"spec.internals", "version.info", "schematron.zip", "package.json"};
|
||||
|
|
@ -301,11 +303,11 @@ public class IgLoader {
|
|||
}
|
||||
|
||||
public void scanForVersions(List<String> sources, VersionSourceInformation versions) throws FHIRException, IOException {
|
||||
List<String> refs = new ArrayList<String>();
|
||||
List<SourceFile> refs = new ArrayList<>();
|
||||
ValidatorUtils.parseSources(sources, refs, context);
|
||||
for (String ref : refs) {
|
||||
Content cnt = loadContent(ref, "validate", false);
|
||||
scanForFhirVersion(versions, ref, cnt.getFocus());
|
||||
for (SourceFile ref : refs) {
|
||||
Content cnt = loadContent(ref.getRef(), "validate", false);
|
||||
scanForFhirVersion(versions, ref.getRef(), cnt.getFocus());
|
||||
}
|
||||
}
|
||||
|
||||
|
|
@ -848,4 +850,10 @@ public class IgLoader {
|
|||
private void log(String s) {
|
||||
if (isDebug()) System.out.println(s);
|
||||
}
|
||||
|
||||
@Override
|
||||
public void load(Content cnt) throws FHIRException, IOException {
|
||||
Resource res = loadResourceByVersion(version, cnt.getFocus(), cnt.getExampleFileName());
|
||||
context.cacheResource(res);
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -37,6 +37,7 @@ import org.hl7.fhir.utilities.TextFile;
|
|||
import org.hl7.fhir.utilities.Utilities;
|
||||
import org.hl7.fhir.utilities.validation.ValidationMessage;
|
||||
import org.hl7.fhir.utilities.xhtml.XhtmlComposer;
|
||||
import org.hl7.fhir.validation.ValidatorUtils.SourceFile;
|
||||
import org.hl7.fhir.validation.cli.model.ScanOutputItem;
|
||||
import org.hl7.fhir.validation.instance.InstanceValidator;
|
||||
|
||||
|
|
@ -75,22 +76,22 @@ public class Scanner {
|
|||
}
|
||||
|
||||
protected List<ScanOutputItem> validateScan(List<String> sources, Set<String> guides) throws FHIRException, IOException, EOperationOutcome {
|
||||
List<String> refs = new ArrayList<>();
|
||||
List<SourceFile> refs = new ArrayList<>();
|
||||
ValidatorUtils.parseSources(sources, refs, getContext());
|
||||
|
||||
List<ScanOutputItem> res = new ArrayList<>();
|
||||
|
||||
for (String ref : refs) {
|
||||
Content cnt = getIgLoader().loadContent(ref, "validate", false);
|
||||
for (SourceFile ref : refs) {
|
||||
Content cnt = getIgLoader().loadContent(ref.getRef(), "validate", false);
|
||||
List<ValidationMessage> messages = new ArrayList<>();
|
||||
Element e = null;
|
||||
try {
|
||||
System.out.println("Validate " + ref);
|
||||
messages.clear();
|
||||
e = getValidator().validate(null, messages, new ByteArrayInputStream(cnt.getFocus()), cnt.getCntType());
|
||||
res.add(new ScanOutputItem(ref, null, null, ValidatorUtils.messagesToOutcome(messages, getContext(), getFhirPathEngine())));
|
||||
res.add(new ScanOutputItem(ref.getRef(), null, null, ValidatorUtils.messagesToOutcome(messages, getContext(), getFhirPathEngine())));
|
||||
} catch (Exception ex) {
|
||||
res.add(new ScanOutputItem(ref, null, null, exceptionToOutcome(ex)));
|
||||
res.add(new ScanOutputItem(ref.getRef(), null, null, exceptionToOutcome(ex)));
|
||||
}
|
||||
if (e != null) {
|
||||
String rt = e.fhirType();
|
||||
|
|
@ -104,9 +105,9 @@ public class Scanner {
|
|||
System.out.println("Validate " + ref + " against " + ig.getUrl());
|
||||
messages.clear();
|
||||
getValidator().validate(null, messages, new ByteArrayInputStream(cnt.getFocus()), cnt.getCntType(), url);
|
||||
res.add(new ScanOutputItem(ref, ig, null, ValidatorUtils.messagesToOutcome(messages, getContext(), getFhirPathEngine())));
|
||||
res.add(new ScanOutputItem(ref.getRef(), ig, null, ValidatorUtils.messagesToOutcome(messages, getContext(), getFhirPathEngine())));
|
||||
} catch (Exception ex) {
|
||||
res.add(new ScanOutputItem(ref, ig, null, exceptionToOutcome(ex)));
|
||||
res.add(new ScanOutputItem(ref.getRef(), ig, null, exceptionToOutcome(ex)));
|
||||
}
|
||||
}
|
||||
Set<String> done = new HashSet<>();
|
||||
|
|
@ -118,9 +119,9 @@ public class Scanner {
|
|||
System.out.println("Validate " + ref + " against " + sd.getUrl());
|
||||
messages.clear();
|
||||
validator.validate(null, messages, new ByteArrayInputStream(cnt.getFocus()), cnt.getCntType(), Collections.singletonList(sd));
|
||||
res.add(new ScanOutputItem(ref, ig, sd, ValidatorUtils.messagesToOutcome(messages, getContext(), getFhirPathEngine())));
|
||||
res.add(new ScanOutputItem(ref.getRef(), ig, sd, ValidatorUtils.messagesToOutcome(messages, getContext(), getFhirPathEngine())));
|
||||
} catch (Exception ex) {
|
||||
res.add(new ScanOutputItem(ref, ig, sd, exceptionToOutcome(ex)));
|
||||
res.add(new ScanOutputItem(ref.getRef(), ig, sd, exceptionToOutcome(ex)));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -88,6 +88,8 @@ import org.hl7.fhir.utilities.settings.FhirSettings;
|
|||
import org.hl7.fhir.utilities.validation.ValidationMessage;
|
||||
import org.hl7.fhir.utilities.xhtml.XhtmlComposer;
|
||||
import org.hl7.fhir.validation.BaseValidator.ValidationControl;
|
||||
import org.hl7.fhir.validation.ValidationEngine.IValidationEngineLoader;
|
||||
import org.hl7.fhir.validation.ValidatorUtils.SourceFile;
|
||||
import org.hl7.fhir.validation.cli.model.HtmlInMarkdownCheck;
|
||||
import org.hl7.fhir.validation.cli.services.IPackageInstaller;
|
||||
import org.hl7.fhir.validation.cli.utils.ProfileLoader;
|
||||
|
|
@ -176,6 +178,13 @@ POSSIBILITY OF SUCH DAMAGE.
|
|||
@Accessors(chain = true)
|
||||
public class ValidationEngine implements IValidatorResourceFetcher, IValidationPolicyAdvisor, IPackageInstaller, IWorkerContextManager.IPackageLoadingTracker {
|
||||
|
||||
|
||||
public interface IValidationEngineLoader {
|
||||
|
||||
void load(Content cnt) throws FHIRException, IOException;
|
||||
|
||||
}
|
||||
|
||||
@Getter @Setter private SimpleWorkerContext context;
|
||||
@Getter @Setter private Map<String, byte[]> binaries = new HashMap<>();
|
||||
@Getter @Setter private boolean doNative;
|
||||
|
|
@ -423,7 +432,7 @@ public class ValidationEngine implements IValidatorResourceFetcher, IValidationP
|
|||
if (userAgent != null) {
|
||||
contextBuilder.withUserAgent(userAgent);
|
||||
}
|
||||
context = contextBuilder.fromPackage(npm, ValidatorUtils.loaderForVersion(version));
|
||||
context = contextBuilder.fromPackage(npm, ValidatorUtils.loaderForVersion(version), false);
|
||||
} else {
|
||||
Map<String, byte[]> source = igLoader.loadIgSource(src, recursive, true);
|
||||
if (version == null) {
|
||||
|
|
@ -543,35 +552,63 @@ public class ValidationEngine implements IValidatorResourceFetcher, IValidationP
|
|||
return list;
|
||||
}
|
||||
|
||||
public OperationOutcome validate(String source, List<String> profiles) throws FHIRException, IOException {
|
||||
public OperationOutcome validate(String source, List<String> profiles, IValidationEngineLoader loader, boolean all) throws FHIRException, IOException {
|
||||
List<String> l = new ArrayList<String>();
|
||||
List<SourceFile> refs = new ArrayList<>();
|
||||
l.add(source);
|
||||
return (OperationOutcome) validate(l, profiles, null);
|
||||
return (OperationOutcome) validate(l, profiles, refs, null, loader, all);
|
||||
}
|
||||
|
||||
public Resource validate(List<String> sources, List<String> profiles, List<ValidationRecord> record) throws FHIRException, IOException {
|
||||
if (profiles.size() > 0) {
|
||||
System.out.println(" Profiles: " + profiles);
|
||||
}
|
||||
List<String> refs = new ArrayList<String>();
|
||||
public Resource validate(List<String> sources, List<String> profiles, List<SourceFile> refs, List<ValidationRecord> record, IValidationEngineLoader loader, boolean all) throws FHIRException, IOException {
|
||||
boolean asBundle = ValidatorUtils.parseSources(sources, refs, context);
|
||||
Bundle results = new Bundle();
|
||||
results.setType(Bundle.BundleType.COLLECTION);
|
||||
for (String ref : refs) {
|
||||
TimeTracker.Session tts = context.clock().start("validation");
|
||||
context.clock().milestone();
|
||||
System.out.println(" Validate " + ref);
|
||||
Content cnt = igLoader.loadContent(ref, "validate", false);
|
||||
try {
|
||||
OperationOutcome outcome = validate(ref, cnt.getFocus(), cnt.getCntType(), profiles, record);
|
||||
ToolingExtensions.addStringExtension(outcome, ToolingExtensions.EXT_OO_FILE, ref);
|
||||
System.out.println(" " + context.clock().milestone());
|
||||
results.addEntry().setResource(outcome);
|
||||
tts.end();
|
||||
} catch (Exception e) {
|
||||
System.out.println("Validation Infrastructure fail validating " + ref + ": " + e.getMessage());
|
||||
tts.end();
|
||||
throw new FHIRException(e);
|
||||
boolean found = false;
|
||||
|
||||
for (SourceFile ref : refs) {
|
||||
if (ref.isProcess()) {
|
||||
found = true;
|
||||
}
|
||||
}
|
||||
if (!found) {
|
||||
return null;
|
||||
}
|
||||
|
||||
// round one: try to read them all natively
|
||||
// Ignore if it fails.The purpose of this is to make dependencies
|
||||
// available for other resources to depend on. if it fails to load, there'll be an error if there's
|
||||
// something that should've been loaded
|
||||
for (SourceFile ref : refs) {
|
||||
if (ref.isProcess() || all) {
|
||||
ref.setCnt(igLoader.loadContent(ref.getRef(), "validate", false));
|
||||
if (loader != null) {
|
||||
try {
|
||||
loader.load(ref.getCnt());
|
||||
} catch (Throwable t) {
|
||||
System.out.println(t.getMessage());
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (SourceFile ref : refs) {
|
||||
if (ref.isProcess() || all) {
|
||||
TimeTracker.Session tts = context.clock().start("validation");
|
||||
context.clock().milestone();
|
||||
System.out.println(" Validate " + ref);
|
||||
|
||||
try {
|
||||
OperationOutcome outcome = validate(ref.getRef(), ref.getCnt().getFocus(), ref.getCnt().getCntType(), profiles, record);
|
||||
ToolingExtensions.addStringExtension(outcome, ToolingExtensions.EXT_OO_FILE, ref.getRef());
|
||||
System.out.println(" " + context.clock().milestone());
|
||||
results.addEntry().setResource(outcome);
|
||||
tts.end();
|
||||
} catch (Exception e) {
|
||||
System.out.println("Validation Infrastructure fail validating " + ref + ": " + e.getMessage());
|
||||
tts.end();
|
||||
throw new FHIRException(e);
|
||||
}
|
||||
ref.setProcess(false);
|
||||
}
|
||||
}
|
||||
if (asBundle)
|
||||
|
|
@ -598,7 +635,16 @@ public class ValidationEngine implements IValidatorResourceFetcher, IValidationP
|
|||
System.out.println(location + ": " + validator.reportTimes());
|
||||
}
|
||||
if (record != null) {
|
||||
record.add(new ValidationRecord(location, messages));
|
||||
boolean found = false;
|
||||
for (ValidationRecord t : record) {
|
||||
if (t.getLocation().equals(location)) {
|
||||
found = true;
|
||||
t.setMessages(messages);
|
||||
}
|
||||
}
|
||||
if (!found) {
|
||||
record.add(new ValidationRecord(location, messages));
|
||||
}
|
||||
}
|
||||
return ValidatorUtils.messagesToOutcome(messages, context, fhirPathEngine);
|
||||
}
|
||||
|
|
|
|||
|
|
@ -46,4 +46,9 @@ public class ValidationRecord {
|
|||
return info;
|
||||
}
|
||||
|
||||
public void setMessages(List<ValidationMessage> messages) {
|
||||
this.messages = messages;
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -317,8 +317,6 @@ public class ValidatorCli {
|
|||
}
|
||||
|
||||
System.out.println("Loading");
|
||||
// Comment this out because definitions filename doesn't necessarily contain version (and many not even be 14 characters long).
|
||||
// Version gets spit out a couple of lines later after we've loaded the context
|
||||
String definitions = "dev".equals(cliContext.getSv()) ? "hl7.fhir.r5.core#current" : VersionUtilities.packageForVersion(cliContext.getSv()) + "#" + VersionUtilities.getCurrentVersion(cliContext.getSv());
|
||||
ValidationEngine validator = validationService.initializeValidator(cliContext, definitions, tt);
|
||||
tts.end();
|
||||
|
|
|
|||
|
|
@ -4,6 +4,7 @@ import java.io.ByteArrayInputStream;
|
|||
import java.io.File;
|
||||
import java.io.IOException;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Date;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
|
||||
|
|
@ -43,6 +44,33 @@ import org.xml.sax.SAXException;
|
|||
//TODO find a home for these and clean it up
|
||||
public class ValidatorUtils {
|
||||
|
||||
public static class SourceFile {
|
||||
private String ref;
|
||||
private long date;
|
||||
private boolean process;
|
||||
private Content cnt;
|
||||
|
||||
public boolean isProcess() {
|
||||
return process;
|
||||
}
|
||||
public void setProcess(boolean process) {
|
||||
this.process = process;
|
||||
this.cnt = null;
|
||||
}
|
||||
public String getRef() {
|
||||
return ref;
|
||||
}
|
||||
public long getDate() {
|
||||
return date;
|
||||
}
|
||||
public Content getCnt() {
|
||||
return cnt;
|
||||
}
|
||||
public void setCnt(Content cnt) {
|
||||
this.cnt = cnt;
|
||||
}
|
||||
}
|
||||
|
||||
protected static void grabNatives(Map<String, byte[]> source, Map<String, byte[]> binaries, String prefix) {
|
||||
for (Map.Entry<String, byte[]> e : source.entrySet()) {
|
||||
if (e.getKey().endsWith(".zip"))
|
||||
|
|
@ -129,14 +157,15 @@ public class ValidatorUtils {
|
|||
*
|
||||
* @return {@link Boolean#TRUE} if more than one reference is found.
|
||||
*/
|
||||
static boolean extractReferences(String name, List<String> refs, SimpleWorkerContext context) throws IOException {
|
||||
static boolean extractReferences(String name, List<SourceFile> refs, SimpleWorkerContext context) throws IOException {
|
||||
if (Common.isNetworkPath(name)) {
|
||||
refs.add(name);
|
||||
SourceFile src = addSourceFile(refs, name);
|
||||
src.date = Long.MAX_VALUE;
|
||||
} else if (Common.isWildcardPath(name)) {
|
||||
AsteriskFilter filter = new AsteriskFilter(name);
|
||||
File[] files = new File(filter.getDir()).listFiles(filter);
|
||||
for (File file : files) {
|
||||
refs.add(file.getPath());
|
||||
addSourceFile(refs, file);
|
||||
}
|
||||
} else {
|
||||
File file = new File(name);
|
||||
|
|
@ -150,24 +179,49 @@ public class ValidatorUtils {
|
|||
}
|
||||
|
||||
if (file.isFile()) {
|
||||
refs.add(name);
|
||||
addSourceFile(refs, file);
|
||||
} else {
|
||||
for (int i = 0; i < file.listFiles().length; i++) {
|
||||
File[] fileList = file.listFiles();
|
||||
if (fileList[i].isFile())
|
||||
refs.add(fileList[i].getPath());
|
||||
if (fileList[i].isFile()) {
|
||||
if (!Utilities.isIgnorableFile(fileList[i])) {
|
||||
addSourceFile(refs, fileList[i]);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
return refs.size() > 1;
|
||||
}
|
||||
|
||||
private static SourceFile addSourceFile(List<SourceFile> refs, File file) {
|
||||
SourceFile src = addSourceFile(refs, file.getPath());
|
||||
Long l = file.lastModified();
|
||||
if (src.date != l) {
|
||||
src.process = true;
|
||||
}
|
||||
src.date = l;
|
||||
return src;
|
||||
}
|
||||
|
||||
private static SourceFile addSourceFile(List<SourceFile> refs, String path) {
|
||||
for (SourceFile t : refs) {
|
||||
if (t.ref.equals(path)) {
|
||||
return t;
|
||||
}
|
||||
}
|
||||
SourceFile src = new SourceFile();
|
||||
src.ref = path;
|
||||
refs.add(src);
|
||||
return src;
|
||||
}
|
||||
|
||||
/**
|
||||
* Iterates through the list of passed in sources, extracting all references and populated them in the passed in list.
|
||||
*
|
||||
* @return {@link Boolean#TRUE} if more than one reference is found.
|
||||
*/
|
||||
public static boolean parseSources(List<String> sources, List<String> refs, SimpleWorkerContext context) throws IOException {
|
||||
public static boolean parseSources(List<String> sources, List<SourceFile> refs, SimpleWorkerContext context) throws IOException {
|
||||
boolean multipleRefsFound = sources.size() > 1;
|
||||
for (String source : sources) {
|
||||
multipleRefsFound |= extractReferences(source, refs, context);
|
||||
|
|
|
|||
|
|
@ -65,8 +65,10 @@ import org.hl7.fhir.utilities.validation.ValidationMessage;
|
|||
import org.hl7.fhir.validation.Content;
|
||||
import org.hl7.fhir.validation.IgLoader;
|
||||
import org.hl7.fhir.validation.ValidationEngine;
|
||||
import org.hl7.fhir.validation.ValidationEngine.IValidationEngineLoader;
|
||||
import org.hl7.fhir.validation.ValidationRecord;
|
||||
import org.hl7.fhir.validation.ValidatorUtils;
|
||||
import org.hl7.fhir.validation.ValidatorUtils.SourceFile;
|
||||
import org.hl7.fhir.validation.cli.model.CliContext;
|
||||
import org.hl7.fhir.validation.cli.model.FileInfo;
|
||||
import org.hl7.fhir.validation.cli.model.ValidationOutcome;
|
||||
|
|
@ -142,66 +144,86 @@ public class ValidationService {
|
|||
}
|
||||
|
||||
public void validateSources(CliContext cliContext, ValidationEngine validator) throws Exception {
|
||||
long start = System.currentTimeMillis();
|
||||
List<ValidationRecord> records = new ArrayList<>();
|
||||
Resource r = validator.validate(cliContext.getSources(), cliContext.getProfiles(), records);
|
||||
MemoryMXBean mbean = ManagementFactory.getMemoryMXBean();
|
||||
System.out.println("Done. " + validator.getContext().clock().report()+". Memory = "+Utilities.describeSize(mbean.getHeapMemoryUsage().getUsed()+mbean.getNonHeapMemoryUsage().getUsed()));
|
||||
System.out.println();
|
||||
|
||||
PrintStream dst = null;
|
||||
ValidationOutputRenderer renderer = makeValidationOutputRenderer(cliContext);
|
||||
renderer.setCrumbTrails(validator.isCrumbTrails());
|
||||
renderer.setRunDate(runDate);
|
||||
if (renderer.isSingleFile()) {
|
||||
if (cliContext.getOutput() == null) {
|
||||
dst = System.out;
|
||||
} else {
|
||||
dst = new PrintStream(new FileOutputStream(cliContext.getOutput()));
|
||||
}
|
||||
renderer.setOutput(dst);
|
||||
} else {
|
||||
File dir = new File(cliContext.getOutput());
|
||||
if (!dir.isDirectory()) {
|
||||
throw new Error("The output location "+dir.getAbsolutePath()+" must be an existing directory for the output style "+renderer.getStyleCode());
|
||||
}
|
||||
renderer.setFolder(dir);
|
||||
if (cliContext.getProfiles().size() > 0) {
|
||||
System.out.println(" Profiles: " + cliContext.getProfiles());
|
||||
}
|
||||
ValidatorWatchMode watch = ValidatorWatchMode.NONE;
|
||||
IgLoader igLoader = new IgLoader(validator.getPcm(), validator.getContext(), validator.getVersion());
|
||||
|
||||
List<ValidationRecord> records = new ArrayList<>();
|
||||
List<SourceFile> refs = new ArrayList<>();
|
||||
|
||||
int ec = 0;
|
||||
|
||||
if (r instanceof Bundle) {
|
||||
if (renderer.handlesBundleDirectly()) {
|
||||
renderer.render((Bundle) r);
|
||||
} else {
|
||||
renderer.start(((Bundle) r).getEntry().size() > 1);
|
||||
for (Bundle.BundleEntryComponent e : ((Bundle) r).getEntry()) {
|
||||
OperationOutcome op = (OperationOutcome) e.getResource();
|
||||
ec = ec + countErrors(op);
|
||||
renderer.render(op);
|
||||
do {
|
||||
long start = System.currentTimeMillis();
|
||||
Resource r = validator.validate(cliContext.getSources(), cliContext.getProfiles(), refs, records, igLoader, watch == ValidatorWatchMode.ALL);
|
||||
boolean statusNeeded = false;
|
||||
if (r != null) {
|
||||
statusNeeded = true;
|
||||
MemoryMXBean mbean = ManagementFactory.getMemoryMXBean();
|
||||
System.out.println("Done. " + validator.getContext().clock().report()+". Memory = "+Utilities.describeSize(mbean.getHeapMemoryUsage().getUsed()+mbean.getNonHeapMemoryUsage().getUsed()));
|
||||
System.out.println();
|
||||
|
||||
PrintStream dst = null;
|
||||
ValidationOutputRenderer renderer = makeValidationOutputRenderer(cliContext);
|
||||
renderer.setCrumbTrails(validator.isCrumbTrails());
|
||||
renderer.setRunDate(runDate);
|
||||
if (renderer.isSingleFile()) {
|
||||
if (cliContext.getOutput() == null) {
|
||||
dst = System.out;
|
||||
} else {
|
||||
dst = new PrintStream(new FileOutputStream(cliContext.getOutput()));
|
||||
}
|
||||
renderer.setOutput(dst);
|
||||
} else {
|
||||
File dir = new File(cliContext.getOutput());
|
||||
if (!dir.isDirectory()) {
|
||||
throw new Error("The output location "+dir.getAbsolutePath()+" must be an existing directory for the output style "+renderer.getStyleCode());
|
||||
}
|
||||
renderer.setFolder(dir);
|
||||
}
|
||||
|
||||
if (r instanceof Bundle) {
|
||||
if (renderer.handlesBundleDirectly()) {
|
||||
renderer.render((Bundle) r);
|
||||
} else {
|
||||
renderer.start(((Bundle) r).getEntry().size() > 1);
|
||||
for (Bundle.BundleEntryComponent e : ((Bundle) r).getEntry()) {
|
||||
OperationOutcome op = (OperationOutcome) e.getResource();
|
||||
ec = ec + countErrors(op);
|
||||
renderer.render(op);
|
||||
}
|
||||
renderer.finish();
|
||||
}
|
||||
} else if (r == null) {
|
||||
ec = ec + 1;
|
||||
System.out.println("No output from validation - nothing to validate");
|
||||
} else {
|
||||
renderer.start(false);
|
||||
OperationOutcome op = (OperationOutcome) r;
|
||||
ec = countErrors(op);
|
||||
renderer.render((OperationOutcome) r);
|
||||
renderer.finish();
|
||||
}
|
||||
|
||||
if (cliContext.getOutput() != null && dst != null) {
|
||||
dst.close();
|
||||
}
|
||||
|
||||
if (cliContext.getHtmlOutput() != null) {
|
||||
String html = new HTMLOutputGenerator(records).generate(System.currentTimeMillis() - start);
|
||||
TextFile.stringToFile(html, cliContext.getHtmlOutput());
|
||||
System.out.println("HTML Summary in " + cliContext.getHtmlOutput());
|
||||
}
|
||||
renderer.finish();
|
||||
}
|
||||
} else if (r == null) {
|
||||
ec = ec + 1;
|
||||
System.out.println("No output from validation - nothing to validate");
|
||||
} else {
|
||||
renderer.start(false);
|
||||
OperationOutcome op = (OperationOutcome) r;
|
||||
ec = countErrors(op);
|
||||
renderer.render((OperationOutcome) r);
|
||||
renderer.finish();
|
||||
}
|
||||
|
||||
if (cliContext.getOutput() != null && dst != null) {
|
||||
dst.close();
|
||||
}
|
||||
|
||||
if (cliContext.getHtmlOutput() != null) {
|
||||
String html = new HTMLOutputGenerator(records).generate(System.currentTimeMillis() - start);
|
||||
TextFile.stringToFile(html, cliContext.getHtmlOutput());
|
||||
System.out.println("HTML Summary in " + cliContext.getHtmlOutput());
|
||||
}
|
||||
if (watch != ValidatorWatchMode.NONE) {
|
||||
if (statusNeeded) {
|
||||
System.out.println("Watching for changes");
|
||||
}
|
||||
Thread.sleep(1000);
|
||||
}
|
||||
} while (watch != ValidatorWatchMode.NONE);
|
||||
System.exit(ec > 0 ? 1 : 0);
|
||||
}
|
||||
|
||||
|
|
@ -552,11 +574,11 @@ public class ValidationService {
|
|||
XLIFFProducer xliff = new XLIFFProducer(Utilities.path(dst));
|
||||
JsonLangFileProducer jl = new JsonLangFileProducer(Utilities.path(dst));
|
||||
|
||||
List<String> refs = new ArrayList<String>();
|
||||
List<SourceFile> refs = new ArrayList<>();
|
||||
ValidatorUtils.parseSources(cliContext.getSources(), refs, validator.getContext());
|
||||
for (String ref : refs) {
|
||||
for (SourceFile ref : refs) {
|
||||
System.out.println(" Extract Translations from " + ref);
|
||||
org.hl7.fhir.validation.Content cnt = validator.getIgLoader().loadContent(ref, "translate", false);
|
||||
org.hl7.fhir.validation.Content cnt = validator.getIgLoader().loadContent(ref.getRef(), "translate", false);
|
||||
Element e = Manager.parseSingle(validator.getContext(), new ByteArrayInputStream(cnt.getFocus()), cnt.getCntType());
|
||||
LanguageProducerSession ps = po.startSession(e.fhirType()+"-"+e.getIdBase(), cliContext.getSrcLang());
|
||||
LanguageProducerLanguageSession psl = ps.forLang(cliContext.getTgtLang());
|
||||
|
|
@ -586,15 +608,15 @@ public class ValidationService {
|
|||
loadTranslationSource(translations, input);
|
||||
}
|
||||
|
||||
List<String> refs = new ArrayList<String>();
|
||||
List<SourceFile> refs = new ArrayList<>();
|
||||
ValidatorUtils.parseSources(cliContext.getSources(), refs, validator.getContext());
|
||||
int t = 0;
|
||||
for (String ref : refs) {
|
||||
for (SourceFile ref : refs) {
|
||||
System.out.println(" Inject Translations into " + ref);
|
||||
org.hl7.fhir.validation.Content cnt = validator.getIgLoader().loadContent(ref, "translate", false);
|
||||
org.hl7.fhir.validation.Content cnt = validator.getIgLoader().loadContent(ref.getRef(), "translate", false);
|
||||
Element e = Manager.parseSingle(validator.getContext(), new ByteArrayInputStream(cnt.getFocus()), cnt.getCntType());
|
||||
t = t + new LanguageUtils(validator.getContext()).importFromTranslations(e, translations);
|
||||
Manager.compose(validator.getContext(), e, new FileOutputStream(Utilities.path(dst, new File(ref).getName())), cnt.getCntType(),
|
||||
Manager.compose(validator.getContext(), e, new FileOutputStream(Utilities.path(dst, new File(ref.getRef()).getName())), cnt.getCntType(),
|
||||
OutputStyle.PRETTY, null);
|
||||
}
|
||||
System.out.println("Done - imported "+t+" translations into "+refs.size()+ " in "+dst);
|
||||
|
|
|
|||
|
|
@ -0,0 +1,8 @@
|
|||
package org.hl7.fhir.validation.cli.services;
|
||||
|
||||
public enum ValidatorWatchMode {
|
||||
NONE, // just stop when validation is done
|
||||
SINGLE, // when validation is done, watch the content that was validated, and revalidate anything that changes
|
||||
ALL // when validation is done, watch the content that was validated, and revalidate everything if anything changes
|
||||
|
||||
}
|
||||
Loading…
Reference in New Issue