fix for problem with contained resources
This commit is contained in:
Grahame Grieve
parent
17e7333bca
commit
9d4592730a
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@ -1743,7 +1743,7 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
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if (xhtml != null) { // if it is null, this is an error already noted in the parsers
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// check that the namespace is there and correct.
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String ns = xhtml.getNsDecl();
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rule(errors, IssueType.INVALID, e.line(), e.col(), path, FormatUtilities.XHTML_NS.equals(ns), "Wrong namespace on the XHTML ('"+ns+"')");
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rule(errors, IssueType.INVALID, e.line(), e.col(), path, FormatUtilities.XHTML_NS.equals(ns), "Wrong namespace on the XHTML ('"+ns+"', should be '"+FormatUtilities.XHTML_NS+"')");
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// check that inner namespaces are all correct
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checkInnerNS(errors, e, path, xhtml.getChildNodes());
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rule(errors, IssueType.INVALID, e.line(), e.col(), path, "div".equals(xhtml.getName()), "Wrong name on the XHTML ('"+ns+"') - must start with div");
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@ -1796,7 +1796,7 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
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for (XhtmlNode node : list) {
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if (node.getNodeType() == NodeType.Element) {
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String ns = node.getNsDecl();
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rule(errors, IssueType.INVALID, e.line(), e.col(), path, ns == null || FormatUtilities.XHTML_NS.equals(ns), "Wrong namespace on the XHTML ('"+ns+"')");
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rule(errors, IssueType.INVALID, e.line(), e.col(), path, ns == null || FormatUtilities.XHTML_NS.equals(ns), "Wrong namespace on the XHTML ('"+ns+"', should be '"+FormatUtilities.XHTML_NS+"')");
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checkInnerNS(errors, e, path, node.getChildNodes());
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}
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}
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@ -1756,7 +1756,7 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
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if (xhtml != null) { // if it is null, this is an error already noted in the parsers
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// check that the namespace is there and correct.
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String ns = xhtml.getNsDecl();
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rule(errors, IssueType.INVALID, e.line(), e.col(), path, FormatUtilities.XHTML_NS.equals(ns), "Wrong namespace on the XHTML ('"+ns+"')");
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rule(errors, IssueType.INVALID, e.line(), e.col(), path, FormatUtilities.XHTML_NS.equals(ns), "Wrong namespace on the XHTML ('"+ns+"', should be '"+FormatUtilities.XHTML_NS+"')");
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// check that inner namespaces are all correct
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checkInnerNS(errors, e, path, xhtml.getChildNodes());
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rule(errors, IssueType.INVALID, e.line(), e.col(), path, "div".equals(xhtml.getName()), "Wrong name on the XHTML ('"+ns+"') - must start with div");
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@ -1809,7 +1809,7 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
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for (XhtmlNode node : list) {
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if (node.getNodeType() == NodeType.Element) {
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String ns = node.getNsDecl();
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rule(errors, IssueType.INVALID, e.line(), e.col(), path, ns == null || FormatUtilities.XHTML_NS.equals(ns), "Wrong namespace on the XHTML ('"+ns+"')");
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rule(errors, IssueType.INVALID, e.line(), e.col(), path, ns == null || FormatUtilities.XHTML_NS.equals(ns), "Wrong namespace on the XHTML ('"+ns+"', should be '"+FormatUtilities.XHTML_NS+"')");
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checkInnerNS(errors, e, path, node.getChildNodes());
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}
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}
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@ -4310,13 +4310,14 @@ private boolean isAnswerRequirementFulfilled(QuestionnaireItemComponent qItem, L
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public void checkInvariants(ValidatorHostContext hostContext, List<ValidationMessage> errors, StructureDefinition profile, ElementDefinition definition,
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Element resource, Element element, NodeStack stack) throws FHIRException {
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if (resource.getName().equals("contained")) {
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NodeStack ancestor = stack;
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while (ancestor != null && ancestor.element != null && (!ancestor.element.isResource() || "contained".equals(ancestor.element.getName())))
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ancestor = ancestor.parent;
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if (ancestor != null && ancestor.element != null)
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checkInvariants(hostContext, errors, stack.getLiteralPath(), profile, definition, null, null, ancestor.element, element);
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} else
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// this was an old work around for resource/rootresource issue.
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// if (resource.getName().equals("contained")) {
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// NodeStack ancestor = stack;
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// while (ancestor != null && ancestor.element != null && (!ancestor.element.isResource() || "contained".equals(ancestor.element.getName())))
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// ancestor = ancestor.parent;
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// if (ancestor != null && ancestor.element != null)
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// checkInvariants(hostContext, errors, stack.getLiteralPath(), profile, definition, null, null, ancestor.element, element);
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// } else
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checkInvariants(hostContext, errors, stack.getLiteralPath(), profile, definition, null, null, resource, element);
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if (definition.getFixed()!=null)
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checkFixedValue(errors, stack.getLiteralPath(), element, definition.getFixed(), definition.getSliceName(), null);
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@ -4560,7 +4561,7 @@ private boolean isAnswerRequirementFulfilled(QuestionnaireItemComponent qItem, L
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rule(errors, IssueType.INVALID, element.line(), element.col(), stack.getLiteralPath(), false, "Resource requires an id, but none is present");
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else if (idstatus == IdStatus.PROHIBITED && (element.getNamedChild("id") != null))
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rule(errors, IssueType.INVALID, element.line(), element.col(), stack.getLiteralPath(), false, "Resource has an id, but none is allowed");
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start(hostContext, errors, resource, element, defn, stack); // root is both definition and type
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start(hostContext, errors, element, element, defn, stack); // root is both definition and type
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}
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}
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@ -911,6 +911,9 @@
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"errorCount": 0
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}
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},
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"q-bp.xml": {
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"errorCount": 0
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},
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"valueset-slicing-meds-bad.xml" : {
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"version" : "3.0",
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"codesystems": [
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@ -0,0 +1,467 @@
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<?xml version="1.0"?>
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<Questionnaire xmlns="http://hl7.org/fhir">
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<id value="gp-assessment-report"/>
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<meta>
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<versionId value="5"/>
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<lastUpdated value="2019-10-07T03:11:19.7949933+00:00"/>
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<profile value="http://fhir.telstrahealth.com/th-ncsr/StructureDefinition/ncsr-questionnaire"/>
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</meta>
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<text>
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<status value="generated"/>
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<div xmlns="http://www.w3.org/1999/xhtml">div
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</div>
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</text>
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<contained>
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<Bundle>
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<id value="PrePopQuery"/>
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<type value="batch"/>
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<entry>
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<fullUrl value="urn:uuid:88f151c0-a954-468a-88bd-5ae15c08e059"/>
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<request>
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<method value="GET"/>
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<url value="RelatedPerson?patient={{%LaunchPatient.id}}&active=true"/>
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</request>
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</entry>
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</Bundle>
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</contained>
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<extension url="http://standards.healthconnex.com.au/fhir/StructureDefinition/Questionnaire-hcx-css">
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<valueString value="https://smartq.azurewebsites.net/Content/fhir-ncsr.css"/>
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</extension>
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<extension url="http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-launchContext">
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<extension url="name">
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<valueId value="LaunchPatient"/>
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</extension>
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<extension url="type">
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<valueCode value="Patient"/>
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</extension>
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<extension url="description">
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<valueString value="The patient that is to be used to pre-populate the form"/>
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</extension>
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</extension>
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<extension url="http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-launchContext">
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<extension url="name">
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<valueId value="LaunchEpisodeOfCare"/>
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</extension>
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<extension url="type">
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<valueCode value="Episodeofcare"/>
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</extension>
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<extension url="description">
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<valueString value="The episodeofcare that is to be used to pre-populate the form"/>
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</extension>
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</extension>
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<extension url="http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-launchContext">
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<extension url="name">
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<valueId value="LaunchPractitioner"/>
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</extension>
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<extension url="type">
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<valueCode value="Practitioner"/>
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</extension>
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<extension url="description">
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<valueString value="The practitioner that is to be used to pre-populate the form"/>
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</extension>
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</extension>
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<extension url="http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-sourceQueries">
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<valueReference>
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<reference value="#PrePopQuery"/>
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</valueReference>
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</extension>
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<url value="http://fhir.telstrahealth.com/th-ncsr/Questionnaire/gp-assessment-report"/>
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<name value="NcsrGpAssessmentReport"/>
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<title value="GP Assessment Report"/>
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<status value="active"/>
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<subjectType value="Patient"/>
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<date value="2017-10-17T01:39:42.162Z"/>
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<publisher value="Telstra Health"/>
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<description value="GP Assessment report that should be completed when providing an assessment ..."/>
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<useContext>
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<code>
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<system value="http://terminology.hl7.org/CodeSystem/usage-context-type"/>
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<code value="focus"/>
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<display value="Clinical Focus"/>
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</code>
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<valueCodeableConcept>
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<coding>
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<code value="bowel"/>
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<display value="Bowel Cancer Registry"/>
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</coding>
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</valueCodeableConcept>
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</useContext>
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<item>
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<linkId value="part-details"/>
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<text value="Participant details"/>
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<type value="group"/>
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<repeats value="false"/>
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<item>
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<linkId value="participant-id"/>
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<text value="Participant ID number"/>
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<type value="string"/>
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</item>
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<item>
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<extension url="http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression">
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<valueExpression>
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<language value="text/fhirpath"/>
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<expression value="%LaunchPatient.identifier.where(system='http://ns.electronichealth.net.au/id/hi/mc').value.first()"/>
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</valueExpression>
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</extension>
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<linkId value="medicare-number"/>
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<text value="Medicare number"/>
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<type value="string"/>
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</item>
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<item>
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<extension url="http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression">
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<valueExpression>
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<language value="text/fhirpath"/>
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<expression value="%LaunchPatient.identifier.where(system='http://ns.electronichealth.net.au/id/hi/dva').value.first()"/>
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</valueExpression>
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</extension>
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<linkId value="dva-number"/>
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<text value="DVA number"/>
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<type value="string"/>
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</item>
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<item>
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<extension url="http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression">
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<valueExpression>
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<language value="text/fhirpath"/>
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<expression value="%LaunchPatient.name.first().family.first()"/>
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</valueExpression>
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</extension>
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<linkId value="family-name"/>
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<text value="Family name"/>
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<type value="string"/>
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</item>
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<item>
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<extension url="http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression">
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<valueExpression>
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<language value="text/fhirpath"/>
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<expression value="%LaunchPatient.name.first().given.first()"/>
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</valueExpression>
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</extension>
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<linkId value="given-names"/>
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<text value="Given name(s)"/>
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<type value="string"/>
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</item>
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<item>
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<extension url="http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression">
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<valueExpression>
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<language value="text/fhirpath"/>
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<expression value="%LaunchPatient.birthDate"/>
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</valueExpression>
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</extension>
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<linkId value="dob"/>
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<text value="Date of birth"/>
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<type value="date"/>
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</item>
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<item>
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<extension url="http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression">
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<valueExpression>
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<language value="text/fhirpath"/>
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<expression value="%LaunchPatient.gender"/>
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</valueExpression>
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</extension>
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<linkId value="gender"/>
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<text value="Gender"/>
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<type value="choice"/>
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<repeats value="false"/>
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<answerValueSet value="https://sqlonfhir-dstu2.azurewebsites.net/fhir/ValueSet/administrative-gender"/>
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</item>
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<item>
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<extension url="http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression">
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<valueExpression>
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<language value="text/fhirpath"/>
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<expression value="%LaunchPatient.telecom.where(system='phone').select(($this.where(use='mobile') | $this.where(use='home')).first().value)"/>
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</valueExpression>
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</extension>
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<linkId value="contact-number"/>
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<text value="Contact telephone number"/>
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<type value="string"/>
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<item>
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<linkId value="contact-number-tooltip"/>
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<text value="(mobile or land line including area code)"/>
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<type value="text"/>
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</item>
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</item>
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<item>
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<extension url="http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression">
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<valueExpression>
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<language value="text/fhirpath"/>
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<expression value="%PrePopQuery.entry.resource.total"/>
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</valueExpression>
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</extension>
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<linkId value="related-persons"/>
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<text value="Number of active RelatedPersons"/>
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<type value="integer"/>
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</item>
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</item>
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<item>
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<linkId value="symptoms"/>
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<text value="Symptoms present at time of assessment following a positive FOBT result"/>
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<type value="group"/>
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<repeats value="false"/>
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<item>
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<linkId value="5d1f7a32-5601-483a-8881-2c2437c72e9a"/>
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<type value="group"/>
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<repeats value="false"/>
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<item>
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<linkId value="5d1f7a32-5601-483a-8881-2c2437c72e9a-grouptext"/>
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<text value="(Mark all those that apply)"/>
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<type value="text"/>
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</item>
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<item>
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<linkId value="no-symptoms"/>
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<text value="No Symptoms"/>
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<type value="boolean"/>
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</item>
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<item>
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<linkId value="longer-standing"/>
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<text value="Longer standing rectal bleeding (> 6 months)"/>
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<type value="boolean"/>
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</item>
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<item>
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<linkId value="iron-deficiency"/>
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<text value="Iron deficiency anaemia"/>
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<type value="boolean"/>
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</item>
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</item>
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<item>
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<linkId value="46923fac-09ee-4288-8a2e-b4ed70bf7869"/>
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<type value="group"/>
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<repeats value="false"/>
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<item>
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<linkId value="recent-onset"/>
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<text value="Recent onset rectal bleeding ( ≤ 6 months)"/>
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<type value="boolean"/>
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</item>
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<item>
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<linkId value="significant-change"/>
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<text value="Significant change in bowel habits"/>
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<type value="boolean"/>
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</item>
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<item>
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<linkId value="abdominal-pain"/>
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<text value="Abdominal pain"/>
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<type value="boolean"/>
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</item>
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</item>
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</item>
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<item>
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<linkId value="0f9c0385-32ef-4c33-980f-502eab10dd15"/>
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<text value="Assessment outcome following a positive FOBT result"/>
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<type value="group"/>
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<repeats value="false"/>
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<item>
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<extension url="http://standards.healthconnex.com.au/fhir/StructureDefinition/Questionnaire-hcx-horizontal">
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<valueBoolean value="true"/>
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</extension>
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<linkId value="assess-outcome"/>
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<type value="choice"/>
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<repeats value="false"/>
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<answerOption>
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<valueCoding>
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<code value="Y"/>
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<display value="Referred for colonoscopy"/>
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</valueCoding>
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</answerOption>
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<answerOption>
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<valueCoding>
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<code value="N"/>
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<display value="Not referred for colonoscopy"/>
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</valueCoding>
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</answerOption>
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<item>
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<linkId value="group-specialist-clinic"/>
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<text value="Specialist/clinic name and suburb:"/>
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<type value="group"/>
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<enableWhen>
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<question value="assess-outcome"/>
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<operator value="="/>
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<answerCoding>
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<code value="Y"/>
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</answerCoding>
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</enableWhen>
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<repeats value="false"/>
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<item>
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<linkId value="group-specialist-clinic-grouplabel"/>
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<text value="(e.g. name of specialist and/or hospital/clinic and location)"/>
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<type value="text"/>
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</item>
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<item>
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<linkId value="specialist-clinic-name"/>
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<text value="Specialist/Clinic Name"/>
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<type value="string"/>
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</item>
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<item>
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<extension url="http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl">
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<valueCodeableConcept>
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<coding>
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<system value="http://hl7.org/fhir/questionnaire-item-control"/>
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<code value="autocomplete"/>
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</coding>
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</valueCodeableConcept>
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</extension>
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<linkId value="specialist-location"/>
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<text value="Location/Suburb"/>
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<type value="choice"/>
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<repeats value="false"/>
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<answerValueSet value="https://sqlonfhir-ci2.azurewebsites.net/fhir/ValueSet/hcxdir-locality"/>
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</item>
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<item>
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<linkId value="specialist-contact-number"/>
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<text value="Contact-telephone number"/>
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<type value="string"/>
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</item>
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</item>
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<item>
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<linkId value="group-not-referred"/>
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<text value="Reason for not referring colonoscopy"/>
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<type value="group"/>
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<enableWhen>
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<question value="assess-outcome"/>
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<operator value="="/>
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<answerCoding>
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<code value="N"/>
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</answerCoding>
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</enableWhen>
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<repeats value="false"/>
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<item>
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<linkId value="previous-diagnosis"/>
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<text value="Bowel cancer previously diagnosed"/>
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<type value="boolean"/>
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</item>
|
||||
<item>
|
||||
<linkId value="recent-colonoscopy"/>
|
||||
<text value="Recent colonoscopy ( *lt; 18 months)"/>
|
||||
<type value="boolean"/>
|
||||
</item>
|
||||
<item>
|
||||
<linkId value="significant-comorbidity"/>
|
||||
<text value="Significant co-morbidity"/>
|
||||
<type value="boolean"/>
|
||||
</item>
|
||||
<item>
|
||||
<linkId value="limited-life-expectancy"/>
|
||||
<text value="Limited life expectancy"/>
|
||||
<type value="boolean"/>
|
||||
</item>
|
||||
<item>
|
||||
<linkId value="patient-declined"/>
|
||||
<text value="Patient declines colonoscopy"/>
|
||||
<type value="boolean"/>
|
||||
</item>
|
||||
<item>
|
||||
<linkId value="other-conditions"/>
|
||||
<text value="Other medical condition(s)"/>
|
||||
<type value="boolean"/>
|
||||
</item>
|
||||
</item>
|
||||
</item>
|
||||
</item>
|
||||
<item>
|
||||
<linkId value="group-other-exams"/>
|
||||
<text value="Was the patient referred for other examinations(s)?"/>
|
||||
<type value="group"/>
|
||||
<repeats value="false"/>
|
||||
<item>
|
||||
<linkId value="referred-other-exam"/>
|
||||
<type value="choice"/>
|
||||
<repeats value="false"/>
|
||||
<answerOption>
|
||||
<valueCoding>
|
||||
<code value="N"/>
|
||||
<display value="No"/>
|
||||
</valueCoding>
|
||||
</answerOption>
|
||||
<answerOption>
|
||||
<valueCoding>
|
||||
<code value="Y"/>
|
||||
<display value="Yes"/>
|
||||
</valueCoding>
|
||||
</answerOption>
|
||||
<item>
|
||||
<linkId value="group-referred-others"/>
|
||||
<type value="group"/>
|
||||
<enableWhen>
|
||||
<question value="referred-other-exam"/>
|
||||
<operator value="="/>
|
||||
<answerCoding>
|
||||
<code value="Y"/>
|
||||
</answerCoding>
|
||||
</enableWhen>
|
||||
<repeats value="false"/>
|
||||
<item>
|
||||
<linkId value="exam-dcbe"/>
|
||||
<text value="Double contrast barium enema"/>
|
||||
<type value="boolean"/>
|
||||
</item>
|
||||
<item>
|
||||
<linkId value="exam-ctc"/>
|
||||
<text value="CT colonography"/>
|
||||
<type value="boolean"/>
|
||||
</item>
|
||||
<item>
|
||||
<linkId value="exam-sigmoidoscopy"/>
|
||||
<text value="Sigmoidoscopy"/>
|
||||
<type value="boolean"/>
|
||||
</item>
|
||||
<item>
|
||||
<linkId value="exam-other"/>
|
||||
<text value="Other"/>
|
||||
<type value="boolean"/>
|
||||
<item>
|
||||
<linkId value="e58ed410-25e0-49bf-bbeb-a79d52d0acc6"/>
|
||||
<type value="group"/>
|
||||
<enableWhen>
|
||||
<question value="exam-other"/>
|
||||
<operator value="="/>
|
||||
<answerBoolean value="true"/>
|
||||
</enableWhen>
|
||||
<repeats value="false"/>
|
||||
<item>
|
||||
<linkId value="exam-other-details"/>
|
||||
<text value="Please specify"/>
|
||||
<type value="text"/>
|
||||
</item>
|
||||
</item>
|
||||
</item>
|
||||
</item>
|
||||
</item>
|
||||
</item>
|
||||
<item>
|
||||
<linkId value="provider-details"/>
|
||||
<text value="Provider details"/>
|
||||
<type value="group"/>
|
||||
<repeats value="false"/>
|
||||
<item>
|
||||
<extension url="http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression">
|
||||
<valueExpression>
|
||||
<language value="text/fhirpath"/>
|
||||
<expression value="%LaunchPractitioner.identifier.where(system='http://ns.electronichealth.net.au/id/hi/prn').first().value"/>
|
||||
</valueExpression>
|
||||
</extension>
|
||||
<linkId value="provider-number"/>
|
||||
<text value="Provider number for payment"/>
|
||||
<type value="string"/>
|
||||
</item>
|
||||
<item>
|
||||
<extension url="http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression">
|
||||
<valueExpression>
|
||||
<language value="text/fhirpath"/>
|
||||
<expression value="today()"/>
|
||||
</valueExpression>
|
||||
</extension>
|
||||
<linkId value="date-consult"/>
|
||||
<text value="Date of consultation"/>
|
||||
<type value="date"/>
|
||||
</item>
|
||||
<item>
|
||||
<extension url="http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-initialExpression">
|
||||
<valueExpression>
|
||||
<language value="text/fhirpath"/>
|
||||
<expression value="%LaunchPractitioner.name.first().select(given.first() + ' ' + family.first())"/>
|
||||
</valueExpression>
|
||||
</extension>
|
||||
<linkId value="provider-name"/>
|
||||
<text value="Name"/>
|
||||
<type value="string"/>
|
||||
</item>
|
||||
</item>
|
||||
</Questionnaire>
|
||||
Loading…
Reference in New Issue