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rework how extensions are handled after discussion with Michael

This commit is contained in:
Grahame Grieve 2023-08-11 22:27:50 +10:00
parent 369d01646e
commit a5ff5b50a8
1 changed files with 19 additions and 11 deletions
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30
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/terminologies/expansion/ValueSetExpander.java
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@ -97,6 +97,7 @@ import org.hl7.fhir.r5.model.Parameters;
import org.hl7.fhir.r5.model.Parameters.ParametersParameterComponent;
import org.hl7.fhir.r5.model.PrimitiveType;
import org.hl7.fhir.r5.model.Resource;
import org.hl7.fhir.r5.model.StringType;
import org.hl7.fhir.r5.model.CanonicalType;
import org.hl7.fhir.r5.model.UriType;
import org.hl7.fhir.r5.model.ValueSet;
@ -134,7 +135,6 @@ public class ValueSetExpander extends ValueSetProcessBase {
private boolean includeAbstract = true;
public ValueSetExpander(IWorkerContext context) {
super();
this.context = context;
}
@ -149,7 +149,7 @@ public class ValueSetExpander extends ValueSetProcessBase {
}
private ValueSetExpansionContainsComponent addCode(WorkingContext wc, String system, String code, String display, String dispLang, ValueSetExpansionContainsComponent parent, List<ConceptDefinitionDesignationComponent> designations, Parameters expParams,
boolean isAbstract, boolean inactive, String definition, List<ValueSet> filters, boolean noInactive, boolean deprecated, List<ValueSetExpansionPropertyComponent> vsProp,
boolean isAbstract, boolean inactive, List<ValueSet> filters, boolean noInactive, boolean deprecated, List<ValueSetExpansionPropertyComponent> vsProp,
List<ConceptPropertyComponent> csProps, List<org.hl7.fhir.r5.model.ValueSet.ConceptPropertyComponent> expProps, List<Extension> csExtList, List<Extension> vsExtList, ValueSetExpansionComponent exp) throws ETooCostly {
if (filters != null && !filters.isEmpty() && !filterContainsCode(filters, system, code, exp))
@ -168,9 +168,6 @@ public class ValueSetExpander extends ValueSetProcessBase {
if (deprecated) {
ValueSetUtilities.setDeprecated(vsProp, n);
}
if (expParams.getParameterBool("includeDefinition") && definition != null) {
n.addExtension(Extensions.makeVSConceptDefinition(definition));
}
if (ExtensionsUtils.hasExtension(csExtList, "http://hl7.org/fhir/StructureDefinition/codesystem-label")) {
ValueSetUtilities.addProperty(focus, n, "http://hl7.org/fhir/concept-properties#label", "label", ExtensionsUtils.getExtensionValue(csExtList, "http://hl7.org/fhir/StructureDefinition/codesystem-label"));
}
@ -318,7 +315,7 @@ public class ValueSetExpander extends ValueSetProcessBase {
ValueSetExpansionContainsComponent np = null;
for (String code : getCodesForConcept(focus, expParams)) {
ValueSetExpansionContainsComponent t = addCode(wc, focus.getSystem(), code, focus.getDisplay(), vsSrc.getLanguage(), parent,
convert(focus.getDesignation()), expParams, focus.getAbstract(), focus.getInactive(), focus.getExtensionString(ToolingExtensions.EXT_DEFINITION), filters, noInactive, false, vsProps, null, focus.getProperty(), null, focus.getExtension(), exp);
convert(focus.getDesignation()), expParams, focus.getAbstract(), focus.getInactive(), filters, noInactive, false, vsProps, makeCSProps(focus.getExtensionString(ToolingExtensions.EXT_DEFINITION), null), focus.getProperty(), null, focus.getExtension(), exp);
if (np == null) {
np = t;
}
@ -327,6 +324,17 @@ public class ValueSetExpander extends ValueSetProcessBase {
addCodeAndDescendents(wc, c, np, expParams, filters, noInactive, vsProps, vsSrc, exp);
}
private List<ConceptPropertyComponent> makeCSProps(String definition, List<ConceptPropertyComponent> list) {
List<ConceptPropertyComponent> res = new ArrayList<>();
if (!Utilities.noString(definition)) {
res.add(new ConceptPropertyComponent("definition", new StringType(definition)));
}
if (list != null) {
res.addAll(list);
}
return res;
}
private List<String> getCodesForConcept(ValueSetExpansionContainsComponent focus, Parameters expParams) {
List<String> codes = new ArrayList<>();
codes.add(focus.getCode());
@ -363,7 +371,7 @@ public class ValueSetExpander extends ValueSetProcessBase {
boolean dep = CodeSystemUtilities.isDeprecated(cs, def, false);
if ((includeAbstract || !abs) && filterFunc.includeConcept(cs, def) && passesOtherFilters(otherFilters, cs, def.getCode())) {
for (String code : getCodesForConcept(def, expParams)) {
ValueSetExpansionContainsComponent t = addCode(wc, system, code, def.getDisplay(), cs.getLanguage(), parent, def.getDesignation(), expParams, abs, inc, def.getDefinition(), filters, noInactive, dep, vsProps, def.getProperty(), null, def.getExtension(), null, exp);
ValueSetExpansionContainsComponent t = addCode(wc, system, code, def.getDisplay(), cs.getLanguage(), parent, def.getDesignation(), expParams, abs, inc, filters, noInactive, dep, vsProps, makeCSProps(def.getDefinition(), def.getProperty()), null, def.getExtension(), null, exp);
if (np == null) {
np = t;
}
@ -719,8 +727,8 @@ public class ValueSetExpander extends ValueSetProcessBase {
private void copyImportContains(List<ValueSetExpansionContainsComponent> list, ValueSetExpansionContainsComponent parent, Parameters expParams, List<ValueSet> filter, boolean noInactive, List<ValueSetExpansionPropertyComponent> vsProps, ValueSet vsSrc, ValueSetExpansionComponent exp) throws FHIRException, ETooCostly {
for (ValueSetExpansionContainsComponent c : list) {
c.checkNoModifiers("Imported Expansion in Code System", "expanding");
ValueSetExpansionContainsComponent np = addCode(dwc, c.getSystem(), c.getCode(), c.getDisplay(), vsSrc.getLanguage(), parent, null, expParams, c.getAbstract(), c.getInactive(), c.getExtensionString(ToolingExtensions.EXT_DEFINITION),
filter, noInactive, false, vsProps, null, c.getProperty(), null, c.getExtension(), exp);
ValueSetExpansionContainsComponent np = addCode(dwc, c.getSystem(), c.getCode(), c.getDisplay(), vsSrc.getLanguage(), parent, null, expParams, c.getAbstract(), c.getInactive(),
filter, noInactive, false, vsProps, makeCSProps(c.getExtensionString(ToolingExtensions.EXT_DEFINITION), null), c.getProperty(), null, c.getExtension(), exp);
copyImportContains(c.getContains(), np, expParams, filter, noInactive, vsProps, vsSrc, exp);
}
}
@ -850,7 +858,7 @@ public class ValueSetExpander extends ValueSetProcessBase {
isAbstract = CodeSystemUtilities.isNotSelectable(cs, def);
}
addCode(dwc, inc.getSystem(), c.getCode(), !Utilities.noString(c.getDisplay()) ? c.getDisplay() : def == null ? null : def.getDisplay(), c.hasDisplay() ? vsSrc.getLanguage() : cs.getLanguage(), null, mergeDesignations(def, convertDesignations(c.getDesignation())),
expParams, isAbstract, inactive, def == null ? null : def.getDefinition(), imports, noInactive, false, exp.getProperty(), def != null ? def.getProperty() : null, null, def == null ? null : def.getExtension(), c.getExtension(), exp);
expParams, isAbstract, inactive, imports, noInactive, false, exp.getProperty(), def == null ? null : makeCSProps(def.getDefinition(), def.getProperty()), null, def == null ? null : def.getExtension(), c.getExtension(), exp);
}
}
if (inc.getFilter().size() > 0) {
@ -911,7 +919,7 @@ public class ValueSetExpander extends ValueSetProcessBase {
if (def.getDisplay().contains(fc.getValue()) && passesOtherFilters(filters, cs, def.getCode())) {
for (String code : getCodesForConcept(def, expParams)) {
ValueSetExpansionContainsComponent t = addCode(wc, inc.getSystem(), code, def.getDisplay(), cs.getLanguage(), null, def.getDesignation(), expParams, CodeSystemUtilities.isNotSelectable(cs, def), CodeSystemUtilities.isInactive(cs, def),
def.getDefinition(), imports, noInactive, false, exp.getProperty(), def.getProperty(), null, def.getExtension(), null, exp);
imports, noInactive, false, exp.getProperty(), makeCSProps(def.getDefinition(), def.getProperty()), null, def.getExtension(), null, exp);
}
}
}