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Merge pull request #205 from hapifhir/junit_test_issues 

Junit test issues
This commit is contained in:
Grahame Grieve 2020-05-29 05:31:58 +10:00 committed by GitHub
parent 8eb14a9b31 a8176a841d
commit ae7262eb90
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GPG Key ID: 4AEE18F83AFDEB23
5 changed files with 61 additions and 97 deletions
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1
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/formats/XmlParserBase.java
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@ -181,7 +181,6 @@ public abstract class XmlParserBase extends ParserBase implements IParser {
writer.end();
}
/**
* Compose a type to a stream (used in the spec, for example, but not normally in production)
* @

19
org.hl7.fhir.r5/src/test/java/org/hl7/fhir/r5/test/NarrativeGenerationTests.java
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@ -10,6 +10,7 @@ import java.util.stream.Stream;
import javax.xml.parsers.ParserConfigurationException;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.SystemUtils;
import org.hl7.fhir.exceptions.FHIRFormatError;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.formats.IParser.OutputStyle;
@ -38,6 +39,8 @@ import org.xml.sax.SAXException;
public class NarrativeGenerationTests {
public static final String WINDOWS = "WINDOWS";
private static final String HEADER = "<html><head>"+
"<link rel=\"stylesheet\" href=\"http://hl7.org/fhir/fhir.css\"/>"+
"<link rel=\"stylesheet\" href=\"http://hl7.org/fhir/dist/css/bootstrap.css\"/>"+
@ -76,7 +79,15 @@ public class NarrativeGenerationTests {
List<Arguments> objects = new ArrayList<>();
while (test != null && test.getNodeName().equals("test")) {
TestDetails t = new TestDetails(test);
if (t.getId().equals("sdc")) {
if (SystemUtils.OS_NAME.contains(WINDOWS)) {
objects.add(Arguments.of(t.getId(), t));
} else {
System.out.println("sdc test not being adding because the current OS will not pass the test...");
}
} else {
objects.add(Arguments.of(t.getId(), t));
}
test = XMLUtil.getNextSibling(test);
}
return objects.stream();
@ -103,14 +114,6 @@ public class NarrativeGenerationTests {
source = (DomainResource) new XmlParser().parse(new FileInputStream(TestingUtilities.tempFile("narrative", test.getId() + "-actual.xml")));
String html = HEADER+new XhtmlComposer(true).compose(source.getText().getDiv())+FOOTER;
TextFile.stringToFile(html, TestingUtilities.tempFile("narrative", test.getId() + ".html"));
// if (source instanceof Questionnaire) {
// for (QuestionnaireRendererMode mode : QuestionnaireRendererMode.values()) {
// rc.setQuestionnaireMode(mode);
// RendererFactory.factory(source, rc).render(source);
// html = HEADER+new XhtmlComposer(true).compose(source.getText().getDiv())+FOOTER;
// TextFile.stringToFile(html, TestingUtilities.tempFile("narrative", test.getId() +"-"+ mode.toString()+ ".html"));
// }
// }
Assertions.assertTrue(source.equalsDeep(target), "Output does not match expected");
}
}

44
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/comparison/tests/ComparisonTests.java
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@ -1,12 +1,9 @@
package org.hl7.fhir.comparison.tests;
import com.google.common.base.Charsets;
import com.google.gson.GsonBuilder;
import com.google.gson.JsonArray;
import com.google.gson.JsonElement;
import com.google.gson.JsonObject;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.NotImplementedException;
import org.hl7.fhir.convertors.VersionConvertor_10_50;
import org.hl7.fhir.convertors.VersionConvertor_14_50;
import org.hl7.fhir.convertors.VersionConvertor_30_50;
@ -14,39 +11,21 @@ import org.hl7.fhir.convertors.VersionConvertor_40_50;
import org.hl7.fhir.exceptions.DefinitionException;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.exceptions.FHIRFormatError;
import org.hl7.fhir.exceptions.PathEngineException;
import org.hl7.fhir.r5.comparison.CodeSystemComparer;
import org.hl7.fhir.r5.comparison.CodeSystemComparer.CodeSystemComparison;
import org.hl7.fhir.r5.comparison.ComparisonSession;
import org.hl7.fhir.r5.comparison.ValueSetComparer;
import org.hl7.fhir.r5.comparison.ValueSetComparer.ValueSetComparison;
import org.hl7.fhir.r5.conformance.ProfileUtilities;
import org.hl7.fhir.r5.context.IWorkerContext;
import org.hl7.fhir.r5.context.SimpleWorkerContext;
import org.hl7.fhir.r5.elementmodel.Element;
import org.hl7.fhir.r5.elementmodel.Manager;
import org.hl7.fhir.r5.elementmodel.Manager.FhirFormat;
import org.hl7.fhir.r5.elementmodel.ObjectConverter;
import org.hl7.fhir.r5.formats.IParser.OutputStyle;
import org.hl7.fhir.r5.formats.JsonParser;
import org.hl7.fhir.r5.formats.XmlParser;
import org.hl7.fhir.r5.model.Base;
import org.hl7.fhir.r5.model.CanonicalResource;
import org.hl7.fhir.r5.model.CodeSystem;
import org.hl7.fhir.r5.model.Constants;
import org.hl7.fhir.r5.model.FhirPublication;
import org.hl7.fhir.r5.model.Patient;
import org.hl7.fhir.r5.model.Resource;
import org.hl7.fhir.r5.model.StructureDefinition;
import org.hl7.fhir.r5.model.TypeDetails;
import org.hl7.fhir.r5.model.ValueSet;
import org.hl7.fhir.r5.test.utils.TestingUtilities;
import org.hl7.fhir.r5.utils.FHIRPathEngine;
import org.hl7.fhir.r5.utils.FHIRPathEngine.IEvaluationContext;
import org.hl7.fhir.r5.utils.FHIRPathEngine.IEvaluationContext.FunctionDetails;
import org.hl7.fhir.r5.utils.IResourceValidator;
import org.hl7.fhir.r5.utils.IResourceValidator.IValidatorResourceFetcher;
import org.hl7.fhir.r5.utils.IResourceValidator.ReferenceValidationPolicy;
import org.hl7.fhir.utilities.TextFile;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.VersionUtilities;
@ -56,14 +35,10 @@ import org.hl7.fhir.utilities.cache.ToolsVersion;
import org.hl7.fhir.utilities.validation.ValidationMessage;
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueSeverity;
import org.hl7.fhir.utilities.xhtml.XhtmlComposer;
import org.hl7.fhir.validation.ValidationEngine;
import org.hl7.fhir.validation.instance.InstanceValidator;
import org.junit.jupiter.api.AfterAll;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.params.ParameterizedTest;
import org.junit.jupiter.params.provider.Arguments;
import org.junit.jupiter.params.provider.MethodSource;
import org.thymeleaf.util.IWritableCharSequence;
import java.io.File;
import java.io.FileNotFoundException;
@ -74,7 +49,6 @@ import java.util.ArrayList;
import java.util.Collections;
import java.util.HashMap;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.Map.Entry;
import java.util.stream.Stream;
@ -141,36 +115,36 @@ public class ComparisonTests {
ComparisonSession session = new ComparisonSession(context);
if (left instanceof CodeSystem && right instanceof CodeSystem) {
CodeSystemComparer cs = new CodeSystemComparer(session );
CodeSystemComparer cs = new CodeSystemComparer(session);
CodeSystemComparison csc = cs.compare((CodeSystem) left, (CodeSystem) right);
Assertions.assertTrue(csc.getUnion().getConcept().size() > csc.getIntersection().getConcept().size());
new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name+"-union.json")), csc.getUnion());
new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name+"-intersection.json")), csc.getIntersection());
new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name + "-union.json")), csc.getUnion());
new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name + "-intersection.json")), csc.getIntersection());
String xmle = new XhtmlComposer(true).compose(cs.renderErrors(csc));
String xml1 = new XhtmlComposer(true).compose(cs.renderMetadata(csc, "", ""));
String xml2 = new XhtmlComposer(true).compose(cs.renderConcepts(csc, "", ""));
TextFile.stringToFile(HEADER+hd("Messages")+xmle+BREAK+hd("Metadata")+xml1+BREAK+hd("Concepts")+xml2+FOOTER, Utilities.path("[tmp]", "comparison", name+".html"));
TextFile.stringToFile(HEADER + hd("Messages") + xmle + BREAK + hd("Metadata") + xml1 + BREAK + hd("Concepts") + xml2 + FOOTER, Utilities.path("[tmp]", "comparison", name + ".html"));
checkOutcomes(csc.getMessages(), content);
} else if (left instanceof ValueSet && right instanceof ValueSet) {
ValueSetComparer cs = new ValueSetComparer(session);
ValueSetComparison csc = cs.compare((ValueSet) left, (ValueSet) right);
new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name+"-union.json")), csc.getUnion());
new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name+"-intersection.json")), csc.getIntersection());
new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name + "-union.json")), csc.getUnion());
new org.hl7.fhir.r5.formats.JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "comparison", name + "-intersection.json")), csc.getIntersection());
String xmle = new XhtmlComposer(true).compose(cs.renderErrors(csc));
String xml1 = new XhtmlComposer(true).compose(cs.renderMetadata(csc, "", ""));
String xml2 = new XhtmlComposer(true).compose(cs.renderCompose(csc, "", ""));
String xml3 = new XhtmlComposer(true).compose(cs.renderExpansion(csc, "", ""));
TextFile.stringToFile(HEADER+hd("Messages")+xmle+BREAK+hd("Metadata")+xml1+BREAK+hd("Definition")+xml2+BREAK+hd("Expansion")+xml3+FOOTER, Utilities.path("[tmp]", "comparison", name+".html"));
TextFile.stringToFile(HEADER + hd("Messages") + xmle + BREAK + hd("Metadata") + xml1 + BREAK + hd("Definition") + xml2 + BREAK + hd("Expansion") + xml3 + FOOTER, Utilities.path("[tmp]", "comparison", name + ".html"));
checkOutcomes(csc.getMessages(), content);
} else {
throw new FHIRException("Can't compare "+left.fhirType()+" to "+right.fhirType());
throw new FHIRException("Can't compare " + left.fhirType() + " to " + right.fhirType());
}
}
private String hd(String text) {
return "<h2>"+text+"</h2>\r\n";
return "<h2>" + text + "</h2>\r\n";
}
private CanonicalResource load(String name) throws IOException {

12
org.hl7.fhir.validation/src/test/java/org/hl7/fhir/conversion/tests/CrossVersionLibraryTests.java
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@ -1,12 +0,0 @@
package org.hl7.fhir.conversion.tests;
import org.junit.runner.RunWith;
import org.junit.runners.Suite;
import org.junit.runners.Suite.SuiteClasses;
@RunWith(Suite.class)
@SuiteClasses({
SnapShotGenerationTestsX.class})
public class CrossVersionLibraryTests {
}

2
pom.xml
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@ -17,7 +17,7 @@
<properties>
<hapi_fhir_version>5.0.0</hapi_fhir_version>
<validator_test_case_version>1.1.15</validator_test_case_version>
<validator_test_case_version>1.1.16-SNAPSHOT</validator_test_case_version>
<junit_jupiter_version>5.6.2</junit_jupiter_version>
<maven_surefire_version>3.0.0-M4</maven_surefire_version>
<jacoco_version>0.8.5</jacoco_version>