Ad scan mode to validator
This commit is contained in:
Grahame Grieve
parent
9d81f2e32a
commit
b2d2bebd85
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@ -1201,4 +1201,11 @@ public abstract class BaseWorkerContext implements IWorkerContext {
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}
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public List<ImplementationGuide> allImplementationGuides() {
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List<ImplementationGuide> res = new ArrayList<>();
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res.addAll(guides.values());
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return res;
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}
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}
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@ -53,6 +53,7 @@ import org.hl7.fhir.r5.formats.XmlParser;
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import org.hl7.fhir.r5.model.Bundle;
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import org.hl7.fhir.r5.model.Bundle.BundleEntryComponent;
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import org.hl7.fhir.r5.model.ElementDefinition.ElementDefinitionBindingComponent;
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import org.hl7.fhir.r5.model.ImplementationGuide;
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import org.hl7.fhir.r5.model.MetadataResource;
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import org.hl7.fhir.r5.model.Questionnaire;
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import org.hl7.fhir.r5.model.Resource;
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@ -1,5 +1,7 @@
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package org.hl7.fhir.r5.validation;
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import java.io.BufferedOutputStream;
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/*-
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* #%L
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* org.hl7.fhir.validation
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@ -55,19 +57,28 @@ import java.io.ByteArrayOutputStream;
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import java.io.File;
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import java.io.FileInputStream;
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import java.io.FileNotFoundException;
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import java.io.FileOutputStream;
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import java.io.FilenameFilter;
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import java.io.IOException;
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import java.io.InputStream;
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import java.io.OutputStream;
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import java.io.PrintWriter;
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import java.net.URISyntaxException;
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import java.net.URL;
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import java.net.URLConnection;
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import java.text.DateFormat;
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import java.text.ParseException;
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import java.text.SimpleDateFormat;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.Collections;
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import java.util.Date;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Map.Entry;
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import java.util.Set;
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import java.util.zip.ZipEntry;
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import java.util.zip.ZipInputStream;
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@ -94,6 +105,7 @@ import org.hl7.fhir.exceptions.FHIRException;
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import org.hl7.fhir.r5.conformance.ProfileUtilities;
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import org.hl7.fhir.r5.context.SimpleWorkerContext;
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import org.hl7.fhir.r5.context.SimpleWorkerContext.IContextResourceLoader;
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import org.hl7.fhir.r5.elementmodel.Element;
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import org.hl7.fhir.r5.elementmodel.Manager;
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import org.hl7.fhir.r5.elementmodel.Manager.FhirFormat;
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import org.hl7.fhir.r5.formats.FormatUtilities;
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@ -107,9 +119,12 @@ import org.hl7.fhir.r5.model.Constants;
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import org.hl7.fhir.r5.model.DomainResource;
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import org.hl7.fhir.r5.model.FhirPublication;
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import org.hl7.fhir.r5.model.ImplementationGuide;
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import org.hl7.fhir.r5.model.ImplementationGuide.ImplementationGuideGlobalComponent;
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import org.hl7.fhir.r5.model.ImplementationGuide.ManifestResourceComponent;
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import org.hl7.fhir.r5.model.OperationOutcome;
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import org.hl7.fhir.r5.model.OperationOutcome.OperationOutcomeIssueComponent;
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import org.hl7.fhir.r5.model.Parameters;
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import org.hl7.fhir.r5.model.Reference;
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import org.hl7.fhir.r5.model.Resource;
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import org.hl7.fhir.r5.model.ResourceFactory;
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import org.hl7.fhir.r5.model.StructureDefinition;
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@ -124,6 +139,7 @@ import org.hl7.fhir.r5.utils.NarrativeGenerator;
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import org.hl7.fhir.r5.utils.OperationOutcomeUtilities;
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import org.hl7.fhir.r5.utils.StructureMapUtilities;
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import org.hl7.fhir.r5.utils.StructureMapUtilities.ITransformerServices;
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import org.hl7.fhir.r5.validation.ValidationEngine.ScanOutputItem;
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import org.hl7.fhir.r5.utils.ToolingExtensions;
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import org.hl7.fhir.r5.utils.ValidationProfileSet;
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import org.hl7.fhir.utilities.IniFile;
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@ -136,6 +152,7 @@ import org.hl7.fhir.utilities.validation.ValidationMessage;
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import org.hl7.fhir.utilities.validation.ValidationMessage.IssueSeverity;
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import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
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import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
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import org.hl7.fhir.utilities.xhtml.XhtmlComposer;
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import org.xml.sax.SAXException;
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/**
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@ -185,7 +202,47 @@ import org.xml.sax.SAXException;
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*/
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public class ValidationEngine {
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public class TransformSupportServices implements ITransformerServices {
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public class ScanOutputItem {
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private String ref;
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private ImplementationGuide ig;
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private StructureDefinition profile;
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private OperationOutcome outcome;
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private String id;
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public ScanOutputItem(String ref, ImplementationGuide ig, StructureDefinition profile, OperationOutcome outcome) {
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super();
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this.ref = ref;
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this.ig = ig;
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this.profile = profile;
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this.outcome = outcome;
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}
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public String getRef() {
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return ref;
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}
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public ImplementationGuide getIg() {
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return ig;
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}
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public StructureDefinition getProfile() {
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return profile;
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}
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public OperationOutcome getOutcome() {
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return outcome;
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}
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public String getId() {
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return id;
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}
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public void setId(String id) {
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this.id = id;
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}
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public String getTitle() {
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if (profile != null)
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return "Validate " +ref+" against "+profile.present()+" ("+profile.getUrl()+")";
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if (ig != null)
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return "Validate " +ref+" against global profile specified in "+ig.present()+" ("+ig.getUrl()+")";
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return "Validate " +ref+" against FHIR Spec";
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}
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}
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public class TransformSupportServices implements ITransformerServices {
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private List<Resource> outputs;
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@ -476,6 +533,7 @@ public class ValidationEngine {
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InputStream stream = fetchFromUrlSpecific(Utilities.pathURL(src, "package.tgz"), true);
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if (stream != null)
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return loadPackage(stream, Utilities.pathURL(src, "package.tgz"));
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// todo: these options are deprecated - remove once all IGs have been rebuilt post R4 technical correction
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stream = fetchFromUrlSpecific(Utilities.pathURL(src, "igpack.zip"), true);
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if (stream != null)
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return readZip(stream);
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@ -483,12 +541,18 @@ public class ValidationEngine {
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if (stream != null)
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return readZip(stream);
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stream = fetchFromUrlSpecific(Utilities.pathURL(src, "validator.pack"), true);
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//// -----
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// ok, having tried all that... now we'll just try to access it directly
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if (stream == null)
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stream = fetchFromUrlSpecific(src, "application/json", true);
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FhirFormat fmt = checkIsResource(stream, src);
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if (fmt != null) {
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Map<String, byte[]> res = new HashMap<String, byte[]>();
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res.put(Utilities.changeFileExt(src, "."+fmt.getExtension()), TextFile.fileToBytes(src));
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return res;
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}
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}
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throw new Exception("Unable to find/resolve/read -ig "+src);
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}
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@ -505,6 +569,20 @@ public class ValidationEngine {
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}
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}
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private InputStream fetchFromUrlSpecific(String source, String contentType, boolean optional) throws Exception {
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try {
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URL url = new URL(source+"?nocache=" + System.currentTimeMillis());
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URLConnection c = url.openConnection();
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c.setRequestProperty("Content-Type", contentType);
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return c.getInputStream();
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} catch (Exception e) {
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if (optional)
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return null;
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else
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throw e;
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}
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}
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private Map<String, byte[]> scanDirectory(File f, boolean recursive) throws FileNotFoundException, IOException {
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Map<String, byte[]> res = new HashMap<>();
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for (File ff : f.listFiles()) {
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@ -835,6 +913,76 @@ public class ValidationEngine {
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return (OperationOutcome)validate(l, profiles);
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}
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public List<ScanOutputItem> validateScan(List<String> sources, Set<String> guides) throws Exception {
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List<String> refs = new ArrayList<String>();
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handleSources(sources, refs);
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List<ScanOutputItem> res = new ArrayList();
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InstanceValidator validator = getValidator();
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for (String ref : refs) {
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Content cnt = loadContent(ref, "validate");
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List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
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Element e = null;
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try {
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System.out.println("Validate "+ref);
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messages.clear();
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e = validator.validate(null, messages, new ByteArrayInputStream(cnt.focus), cnt.cntType);
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res.add(new ScanOutputItem(ref, null, null, messagesToOutcome(messages)));
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} catch (Exception ex) {
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res.add(new ScanOutputItem(ref, null, null, exceptionToOutcome(ex)));
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}
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if (e != null) {
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String rt = e.fhirType();
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for (String u : guides) {
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ImplementationGuide ig = context.fetchResource(ImplementationGuide.class, u);
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System.out.println("Check Guide "+ig.getUrl());
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String canonical = ig.getUrl().contains("/Impl") ? ig.getUrl().substring(0, ig.getUrl().indexOf("/Impl")) : ig.getUrl();
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String url = getGlobal(ig, rt);
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if (url != null) {
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try {
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System.out.println("Validate "+ref+" against "+ig.getUrl());
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messages.clear();
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validator.validate(null, messages, new ByteArrayInputStream(cnt.focus), cnt.cntType, new ValidationProfileSet(url, true));
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res.add(new ScanOutputItem(ref, ig, null, messagesToOutcome(messages)));
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} catch (Exception ex) {
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res.add(new ScanOutputItem(ref, ig, null, exceptionToOutcome(ex)));
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}
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}
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Set<String> done = new HashSet<>();
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for (StructureDefinition sd : context.allStructures()) {
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if (!done.contains(sd.getUrl())) {
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done.add(sd.getUrl());
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if (sd.getUrl().startsWith(canonical) && rt.equals(sd.getType())) {
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try {
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System.out.println("Validate "+ref+" against "+sd.getUrl());
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messages.clear();
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validator.validate(null, messages, new ByteArrayInputStream(cnt.focus), cnt.cntType, new ValidationProfileSet(sd.getUrl(), true));
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res.add(new ScanOutputItem(ref, ig, sd, messagesToOutcome(messages)));
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} catch (Exception ex) {
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res.add(new ScanOutputItem(ref, ig, sd, exceptionToOutcome(ex)));
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}
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}
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}
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}
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}
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}
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}
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return res;
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}
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private Resource resolve(Reference reference) {
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return null;
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}
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private String getGlobal(ImplementationGuide ig, String rt) {
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for (ImplementationGuideGlobalComponent igg : ig.getGlobal()) {
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if (rt.equals(igg.getType()))
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return igg.getProfile();
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}
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return null;
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}
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public Resource validate(List<String> sources, List<String> profiles) throws Exception {
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List<String> refs = new ArrayList<String>();
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boolean asBundle = handleSources(sources, refs);
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@ -997,6 +1145,13 @@ public class ValidationEngine {
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return filteredValidation;
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}
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private OperationOutcome exceptionToOutcome(Exception ex) throws DefinitionException {
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OperationOutcome op = new OperationOutcome();
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op.addIssue().setCode(org.hl7.fhir.r5.model.OperationOutcome.IssueType.EXCEPTION).setSeverity(org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.FATAL).getDetails().setText(ex.getMessage());
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new NarrativeGenerator("", "", context).generate(null, op);
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return op;
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}
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private OperationOutcome messagesToOutcome(List<ValidationMessage> messages) throws DefinitionException {
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OperationOutcome op = new OperationOutcome();
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for (ValidationMessage vm : filterMessages(messages)) {
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@ -1136,5 +1291,245 @@ public class ValidationEngine {
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public void setDebug(boolean debug) {
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this.debug = debug;
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}
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public void genScanOutput(String folder, List<ScanOutputItem> items) throws IOException {
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String f = Utilities.path(folder, "comparison.zip");
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download("http://fhir.org/archive/comparison.zip", f);
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unzip(f, folder);
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for (int i = 0; i < items.size(); i++) {
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items.get(i).setId("c"+Integer.toString(i));
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genScanOutputItem(items.get(i), Utilities.path(folder, items.get(i).getId()+".html"));
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}
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StringBuilder b = new StringBuilder();
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b.append("<html>");
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b.append("<head>");
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b.append("<title>Implementation Guide Scan</title>");
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b.append("<link rel=\"stylesheet\" href=\"fhir.css\"/>\r\n");
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b.append("<style>\r\n");
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b.append("th \r\n");
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b.append("{\r\n");
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b.append(" vertical-align: bottom;\r\n");
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b.append(" text-align: center;\r\n");
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b.append("}\r\n");
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b.append("\r\n");
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b.append("th span\r\n");
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b.append("{\r\n");
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b.append(" -ms-writing-mode: tb-rl;\r\n");
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b.append(" -webkit-writing-mode: vertical-rl;\r\n");
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b.append(" writing-mode: vertical-rl;\r\n");
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b.append(" transform: rotate(180deg);\r\n");
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b.append(" white-space: nowrap;\r\n");
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b.append("}\r\n");
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b.append("</style>\r\n");
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b.append("</head>");
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b.append("<body>");
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b.append("<h2>Implementation Guide Scan</h2>");
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// organise
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Set<String> refs = new HashSet<>();
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Set<String> igs = new HashSet<>();
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Map<String, Set<String>> profiles = new HashMap<>();
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for (ScanOutputItem item : items) {
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refs.add(item.ref);
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if (item.ig != null) {
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igs.add(item.ig.getUrl());
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if (!profiles.containsKey(item.ig.getUrl())) {
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profiles.put(item.ig.getUrl(), new HashSet<>());
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}
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if (item.profile != null)
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profiles.get(item.ig.getUrl()).add(item.profile.getUrl());
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}
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}
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b.append("<h2>By reference</h2>\r\n");
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b.append("<table class=\"grid\">");
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b.append("<tr><th></th><th></th>");
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for (String s : sorted(igs)) {
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ImplementationGuide ig = context.fetchResource(ImplementationGuide.class, s);
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b.append("<th colspan=\""+Integer.toString(profiles.get(s).size()+1)+"\"><b title=\""+s+"\">"+ig.present()+"</b></th>");
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}
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b.append("</tr>\r\n");
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b.append("<tr><th><b>Source</b></th><th><span>Core Spec</span></th>");
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for (String s : sorted(igs)) {
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ImplementationGuide ig = context.fetchResource(ImplementationGuide.class, s);
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b.append("<th><span>Global</span></th>");
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for (String sp : sorted(profiles.get(s))) {
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StructureDefinition sd = context.fetchResource(StructureDefinition.class, sp);
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b.append("<th><b title=\""+sp+"\"><span>"+sd.present()+"</span></b></th>");
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}
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}
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b.append("</tr>\r\n");
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for (String s : sorted(refs)) {
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b.append("<tr>");
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b.append("<td>"+s+"</td>");
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b.append(genOutcome(items, s, null, null));
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for (String si : sorted(igs)) {
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ImplementationGuide ig = context.fetchResource(ImplementationGuide.class, si);
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b.append(genOutcome(items, s, si, null));
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for (String sp : sorted(profiles.get(ig.getUrl()))) {
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b.append(genOutcome(items, s, si, sp));
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}
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}
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b.append("</tr>\r\n");
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}
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b.append("</table>\r\n");
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b.append("<h2>By IG</h2>\r\n");
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b.append("<table class=\"grid\">");
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b.append("<tr><th></th><th></th>");
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for (String s : sorted(refs)) {
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b.append("<th><span>"+s+"</span></th>");
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}
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b.append("</tr>\r\n");
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b.append("<tr><td></td><td>Core Spec</td>");
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for (String s : sorted(refs)) {
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b.append(genOutcome(items, s, null, null));
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}
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b.append("</tr>\r\n");
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for (String si : sorted(igs)) {
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b.append("<tr>");
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ImplementationGuide ig = context.fetchResource(ImplementationGuide.class, si);
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b.append("<td><b title=\""+si+"\">"+ig.present()+"</b></td>");
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b.append("<td>Global</td>");
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for (String s : sorted(refs)) {
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b.append(genOutcome(items, s, si, null));
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}
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b.append("</tr>\r\n");
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for (String sp : sorted(profiles.get(ig.getUrl()))) {
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b.append("<tr>");
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StructureDefinition sd = context.fetchResource(StructureDefinition.class, sp);
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b.append("<td></td><td><b title=\""+sp+"\">"+sd.present()+"</b></td>");
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for (String s : sorted(refs)) {
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b.append(genOutcome(items, s, si, sp));
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}
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b.append("</tr>\r\n");
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}
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}
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b.append("</table>\r\n");
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b.append("</body>");
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b.append("</html>");
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TextFile.stringToFile(b.toString(), Utilities.path(folder, "scan.html"));
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}
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private String genOutcome(List<ScanOutputItem> items, String src, String ig, String profile) {
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ScanOutputItem item = null;
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for (ScanOutputItem t : items) {
|
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boolean match = true;
|
||||
if (!t.ref.equals(src))
|
||||
match = false;
|
||||
if (!((ig == null && t.ig == null) || (ig != null && t.ig != null && ig.equals(t.ig.getUrl()))))
|
||||
match = false;
|
||||
if (!((profile == null && t.profile == null) || (profile != null && t.profile != null && profile.equals(t.profile.getUrl()))))
|
||||
match = false;
|
||||
if (match) {
|
||||
item = t;
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
if (item == null)
|
||||
return "<td></td>";
|
||||
boolean ok = true;
|
||||
for (OperationOutcomeIssueComponent iss : item.outcome.getIssue()) {
|
||||
if (iss.getSeverity() == org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.ERROR || iss.getSeverity() == org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.FATAL) {
|
||||
ok = false;
|
||||
}
|
||||
}
|
||||
if (ok)
|
||||
return "<td style=\"background-color: #e6ffe6\"><a href=\""+item.getId()+".html\">\u2714</a></td>";
|
||||
else
|
||||
return "<td style=\"background-color: #ffe6e6\"><a href=\""+item.getId()+".html\">\u2716</a></td>";
|
||||
}
|
||||
|
||||
public void unzip(String zipFilePath, String destDirectory) throws IOException {
|
||||
File destDir = new File(destDirectory);
|
||||
if (!destDir.exists()) {
|
||||
destDir.mkdir();
|
||||
}
|
||||
ZipInputStream zipIn = new ZipInputStream(new FileInputStream(zipFilePath));
|
||||
ZipEntry entry = zipIn.getNextEntry();
|
||||
// iterates over entries in the zip file
|
||||
while (entry != null) {
|
||||
String filePath = destDirectory + File.separator + entry.getName();
|
||||
if (!entry.isDirectory()) {
|
||||
// if the entry is a file, extracts it
|
||||
extractFile(zipIn, filePath);
|
||||
} else {
|
||||
// if the entry is a directory, make the directory
|
||||
File dir = new File(filePath);
|
||||
dir.mkdir();
|
||||
}
|
||||
zipIn.closeEntry();
|
||||
entry = zipIn.getNextEntry();
|
||||
}
|
||||
zipIn.close();
|
||||
}
|
||||
|
||||
private static final int BUFFER_SIZE = 4096;
|
||||
|
||||
private void extractFile(ZipInputStream zipIn, String filePath) throws IOException {
|
||||
BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(filePath));
|
||||
byte[] bytesIn = new byte[BUFFER_SIZE];
|
||||
int read = 0;
|
||||
while ((read = zipIn.read(bytesIn)) != -1) {
|
||||
bos.write(bytesIn, 0, read);
|
||||
}
|
||||
bos.close();
|
||||
}
|
||||
|
||||
private void download(String address, String filename) throws IOException {
|
||||
URL url = new URL(address);
|
||||
URLConnection c = url.openConnection();
|
||||
InputStream s = c.getInputStream();
|
||||
FileOutputStream f = new FileOutputStream(filename);
|
||||
transfer(s, f, 1024);
|
||||
f.close();
|
||||
}
|
||||
|
||||
public static void transfer(InputStream in, OutputStream out, int buffer) throws IOException {
|
||||
byte[] read = new byte[buffer]; // Your buffer size.
|
||||
while (0 < (buffer = in.read(read)))
|
||||
out.write(read, 0, buffer);
|
||||
}
|
||||
|
||||
private void genScanOutputItem(ScanOutputItem item, String filename) throws IOException {
|
||||
NarrativeGenerator gen = new NarrativeGenerator("", "http://hl7.org/fhir", context);
|
||||
gen.setNoSlowLookup(true);
|
||||
gen.generate(null, item.outcome);
|
||||
String s = new XhtmlComposer(XhtmlComposer.HTML).compose(item.outcome.getText().getDiv());
|
||||
|
||||
String title = item.getTitle();
|
||||
|
||||
StringBuilder b = new StringBuilder();
|
||||
b.append("<html>");
|
||||
b.append("<head>");
|
||||
b.append("<title>"+title+"</title>");
|
||||
b.append("<link rel=\"stylesheet\" href=\"fhir.css\"/>\r\n");
|
||||
b.append("</head>");
|
||||
b.append("<body>");
|
||||
b.append("<h2>"+title+"</h2>");
|
||||
b.append(s);
|
||||
b.append("</body>");
|
||||
b.append("</html>");
|
||||
TextFile.stringToFile(b.toString(), filename);
|
||||
|
||||
}
|
||||
|
||||
|
||||
private List<String> sorted(Set<String> keys) {
|
||||
List<String> names = new ArrayList<String>();
|
||||
if (keys != null)
|
||||
names.addAll(keys);
|
||||
Collections.sort(names);
|
||||
return names;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -58,8 +58,10 @@ import java.net.HttpURLConnection;
|
|||
import java.net.URL;
|
||||
import java.util.ArrayList;
|
||||
import java.util.HashMap;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
|
||||
import org.hl7.fhir.r4.model.CapabilityStatement.CapabilityStatementKind;
|
||||
import org.hl7.fhir.r5.conformance.CapabilityStatementUtilities;
|
||||
|
|
@ -81,7 +83,9 @@ import org.hl7.fhir.r5.model.OperationOutcome;
|
|||
import org.hl7.fhir.r5.model.OperationOutcome.OperationOutcomeIssueComponent;
|
||||
import org.hl7.fhir.r5.model.Resource;
|
||||
import org.hl7.fhir.r5.model.StructureDefinition;
|
||||
import org.hl7.fhir.r5.utils.NarrativeGenerator;
|
||||
import org.hl7.fhir.r5.utils.ToolingExtensions;
|
||||
import org.hl7.fhir.r5.validation.ValidationEngine.ScanOutputItem;
|
||||
import org.hl7.fhir.utilities.TextFile;
|
||||
import org.hl7.fhir.utilities.Utilities;
|
||||
import org.hl7.fhir.utilities.VersionUtil;
|
||||
|
|
@ -106,7 +110,7 @@ import org.hl7.fhir.utilities.xhtml.XhtmlComposer;
|
|||
public class Validator {
|
||||
|
||||
public enum EngineMode {
|
||||
VALIDATION, TRANSFORM, NARRATIVE, SNAPSHOT
|
||||
VALIDATION, TRANSFORM, NARRATIVE, SNAPSHOT, SCAN
|
||||
}
|
||||
|
||||
private static String getNamedParam(String[] args, String param) {
|
||||
|
|
@ -339,7 +343,7 @@ public class Validator {
|
|||
String lang = null;
|
||||
boolean doDebug = false;
|
||||
|
||||
// load the parameters - so order doesn't matter
|
||||
// load the parameters - so order doesn't matter
|
||||
for (int i = 0; i < args.length; i++) {
|
||||
if (args[i].equals("-defn"))
|
||||
if (i+1 == args.length)
|
||||
|
|
@ -396,6 +400,8 @@ public class Validator {
|
|||
mode = EngineMode.NARRATIVE;
|
||||
else if (args[i].equals("-snapshot"))
|
||||
mode = EngineMode.SNAPSHOT;
|
||||
else if (args[i].equals("-scan"))
|
||||
mode = EngineMode.SCAN;
|
||||
else if (args[i].equals("-tx"))
|
||||
if (i+1 == args.length)
|
||||
throw new Error("Specified -tx without indicating terminology server");
|
||||
|
|
@ -510,25 +516,41 @@ public class Validator {
|
|||
validator.loadProfile(locations.getOrDefault(s, s));
|
||||
}
|
||||
}
|
||||
if (profiles.size() > 0)
|
||||
System.out.println(" .. validate "+sources+" against "+profiles.toString());
|
||||
else
|
||||
System.out.println(" .. validate "+sources);
|
||||
validator.prepare(); // generate any missing snapshots
|
||||
Resource r = validator.validate(sources, profiles);
|
||||
int ec = 0;
|
||||
if (output == null) {
|
||||
if (r instanceof Bundle)
|
||||
for (BundleEntryComponent e : ((Bundle)r).getEntry())
|
||||
ec = displayOO((OperationOutcome)e.getResource()) + ec;
|
||||
if (mode == EngineMode.SCAN) {
|
||||
if (Utilities.noString(output))
|
||||
throw new Exception("Output parameter required when scanning");
|
||||
if (!(new File(output).isDirectory()))
|
||||
throw new Exception("Output '"+output+"' must be a directory when scanning");
|
||||
System.out.println(" .. scan "+sources+" against loaded IGs");
|
||||
Set<String> urls = new HashSet<>();
|
||||
for (ImplementationGuide ig : validator.getContext().allImplementationGuides()) {
|
||||
if (ig.getUrl().contains("/ImplementationGuide") && !ig.getUrl().equals("http://hl7.org/fhir/ImplementationGuide/fhir"))
|
||||
urls.add(ig.getUrl());
|
||||
}
|
||||
List<ScanOutputItem> res = validator.validateScan(sources, urls);
|
||||
validator.genScanOutput(output, res);
|
||||
System.out.println("Done. output in "+Utilities.path(output, "scan.html"));
|
||||
} else {
|
||||
if (profiles.size() > 0)
|
||||
System.out.println(" .. validate "+sources+" against "+profiles.toString());
|
||||
else
|
||||
ec = displayOO((OperationOutcome)r);
|
||||
} else {
|
||||
FileOutputStream s = new FileOutputStream(output);
|
||||
x.compose(s, r);
|
||||
s.close();
|
||||
System.out.println(" .. validate "+sources);
|
||||
validator.prepare(); // generate any missing snapshots
|
||||
Resource r = validator.validate(sources, profiles);
|
||||
int ec = 0;
|
||||
if (output == null) {
|
||||
if (r instanceof Bundle)
|
||||
for (BundleEntryComponent e : ((Bundle)r).getEntry())
|
||||
ec = displayOO((OperationOutcome)e.getResource()) + ec;
|
||||
else
|
||||
ec = displayOO((OperationOutcome)r);
|
||||
} else {
|
||||
FileOutputStream s = new FileOutputStream(output);
|
||||
x.compose(s, r);
|
||||
s.close();
|
||||
}
|
||||
System.exit(ec > 0 ? 1 : 0);
|
||||
}
|
||||
System.exit(ec > 0 ? 1 : 0);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
|
|||
Loading…
Reference in New Issue