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add tests for allergy intolerance conversion

This commit is contained in:
Itay Goren 2020-08-31 22:55:14 +03:00
parent 05994163dd
commit b93cb71032
8 changed files with 212 additions and 0 deletions
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39
org.hl7.fhir.convertors/src/test/java/org/hl7/fhir/convertors/conv10_30/AllergyIntolerance10_30Test.java
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package org.hl7.fhir.convertors.conv10_30;
import org.hl7.fhir.convertors.VersionConvertorAdvisor30;
import org.hl7.fhir.convertors.VersionConvertor_10_30;
import org.hl7.fhir.convertors.loaders.R2ToR3Loader;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.DisplayName;
import org.junit.jupiter.api.Test;
import org.junit.jupiter.params.ParameterizedTest;
import org.junit.jupiter.params.provider.Arguments;
import org.junit.jupiter.params.provider.MethodSource;
import java.io.IOException;
import java.io.InputStream;
import java.util.stream.Stream;
public class AllergyIntolerance10_30Test {
private static Stream<Arguments> filesPaths() {
return Stream.of(
Arguments.of("/0_allergy_intolerance_10.json", "/0_allergy_intolerance_30.json"),
Arguments.of("/1_allergy_intolerance_10.json", "/1_allergy_intolerance_30.json")
);
}
@ParameterizedTest
@MethodSource("filesPaths")
@DisplayName("Test 10_30 AllergyIntolerance conversion")
public void testMedicationRequestConversion(String dstu2_path, String stu_path) throws IOException {
InputStream dstu2_input = this.getClass().getResourceAsStream(dstu2_path);
InputStream stu_exepected_input = this.getClass().getResourceAsStream(stu_path);
org.hl7.fhir.dstu2.model.AllergyIntolerance dstu2 = (org.hl7.fhir.dstu2.model.AllergyIntolerance) new org.hl7.fhir.dstu2.formats.JsonParser().parse(dstu2_input);
VersionConvertorAdvisor30 advisor = new R2ToR3Loader();
org.hl7.fhir.dstu3.model.Resource stu_actual = VersionConvertor_10_30.convertResource(dstu2, advisor);
org.hl7.fhir.dstu3.formats.JsonParser stu_parser = new org.hl7.fhir.dstu3.formats.JsonParser();
org.hl7.fhir.dstu3.model.Resource stu_expected = stu_parser.parse(stu_exepected_input);
Assertions.assertTrue(stu_expected.equalsDeep(stu_actual),
"Failed comparing\n" + stu_parser.composeString(stu_actual) + "\nand\n" + stu_parser.composeString(stu_expected)
);
}
}

43
org.hl7.fhir.convertors/src/test/java/org/hl7/fhir/convertors/conv10_40/AllergyIntolerance10_40Test.java Normal file
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package org.hl7.fhir.convertors.conv10_40;
import org.hl7.fhir.convertors.VersionConvertorAdvisor40;
import org.hl7.fhir.convertors.VersionConvertor_10_40;
import org.hl7.fhir.convertors.misc.IGR2ConvertorAdvisor;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.DisplayName;
import org.junit.jupiter.api.Test;
import org.junit.jupiter.params.ParameterizedTest;
import org.junit.jupiter.params.provider.Arguments;
import org.junit.jupiter.params.provider.MethodSource;
import java.io.IOException;
import java.io.InputStream;
import java.util.stream.Stream;
public class AllergyIntolerance10_40Test {
private static Stream<Arguments> filesPaths() {
return Stream.of(
Arguments.of("/0_allergy_intolerance_10.json", "/0_allergy_intolerance_40.json"),
Arguments.of("/1_allergy_intolerance_10.json", "/1_allergy_intolerance_40.json")
);
}
@ParameterizedTest
@MethodSource("filesPaths")
@DisplayName("Test 10_40 AllergyIntolerance conversion")
public void testMedicationRequestConversion(String dstu2_path, String r4_path) throws IOException {
InputStream dstu2_input = this.getClass().getResourceAsStream(dstu2_path);
InputStream r4_exepected_input = this.getClass().getResourceAsStream(r4_path);
org.hl7.fhir.dstu2.model.AllergyIntolerance dstu2 = (org.hl7.fhir.dstu2.model.AllergyIntolerance) new org.hl7.fhir.dstu2.formats.JsonParser().parse(dstu2_input);
VersionConvertorAdvisor40 advisor = new IGR2ConvertorAdvisor();
org.hl7.fhir.r4.model.Resource r4_actual = VersionConvertor_10_40.convertResource(dstu2, advisor);
org.hl7.fhir.r4.formats.JsonParser r4_parser = new org.hl7.fhir.r4.formats.JsonParser();
org.hl7.fhir.r4.model.Resource r4_expected = r4_parser.parse(r4_exepected_input);
Assertions.assertTrue(r4_expected.equalsDeep(r4_actual),
"Failed comparing\n" + r4_parser.composeString(r4_actual) + "\nand\n" + r4_parser.composeString(r4_expected)
);
}
}

20
org.hl7.fhir.convertors/src/test/resources/0_allergy_intolerance_10.json Normal file
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{"resourceType": "AllergyIntolerance",
"recordedDate": "2015-08-25T02:11:36",
"status": "confirmed",
"criticality": "CRITL",
"id": "TBwnNbrAqC0Qw5Ha7AFT-2AB",
"onset": "2012-11-07T00:00:00Z",
"recorder": {"display": "MOORE, NICK",
"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Practitioner/TItWfhjChtlo0pFh9nzctSQB"},
"patient": {"display": "Jason Argonaut",
"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Patient/Tbt3KuCY0B5PSrJvCu2j-PlK.aiHsu2xUjUM8bWpetXoB"},
"substance": {"text": "PENICILLIN G",
"coding": [{"system": "http://www.nlm.nih.gov/research/umls/rxnorm",
"code": "7980",
"display": "PENICILLIN G"},
{"system": "http://fdasis.nlm.nih.gov",
"code": "Q42T66VG0C",
"display": "PENICILLIN G"}]},
"reaction": [{"certainty": "confirmed",
"onset": "2012-11-07T00:00:00Z",
"manifestation": [{"text": "Hives"}]}]}

22
org.hl7.fhir.convertors/src/test/resources/0_allergy_intolerance_30.json Normal file
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{"resourceType": "AllergyIntolerance",
"id": "TBwnNbrAqC0Qw5Ha7AFT-2AB",
"clinicalStatus": "active",
"verificationStatus": "confirmed",
"criticality": "low",
"code": {"coding": [{"system": "http://www.nlm.nih.gov/research/umls/rxnorm",
"code": "7980",
"display": "PENICILLIN G"},
{"system": "http://fdasis.nlm.nih.gov",
"code": "Q42T66VG0C",
"display": "PENICILLIN G"}],
"text": "PENICILLIN G"},
"patient": {"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Patient/Tbt3KuCY0B5PSrJvCu2j-PlK.aiHsu2xUjUM8bWpetXoB",
"display": "Jason Argonaut"},
"onsetDateTime": "2012-11-07T00:00:00",
"assertedDate": "2015-08-25T02:11:36",
"recorder": {"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Practitioner/TItWfhjChtlo0pFh9nzctSQB",
"display": "MOORE, NICK"},
"reaction": [{"extension": [{"url": "http://hl7.org/fhir/AllergyIntolerance-r2-certainty",
"valueString": "confirmed"}],
"manifestation": [{"text": "Hives"}],
"onset": "2012-11-07T00:00:00"}]}

23
org.hl7.fhir.convertors/src/test/resources/0_allergy_intolerance_40.json Normal file
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{"resourceType": "AllergyIntolerance",
"clinicalStatus": {"coding": [{"system": "http://terminology.hl7.org/CodeSystem/allergyintolerance-clinical",
"code": "confirmed"}]},
"verificationStatus": {"coding": [{"system": "http://terminology.hl7.org/CodeSystem/allergyintolerance-verification",
"code": "confirmed"}]},
"criticality": "low",
"code": {"coding": [{"system": "http://www.nlm.nih.gov/research/umls/rxnorm",
"code": "7980",
"display": "PENICILLIN G"},
{"system": "http://fdasis.nlm.nih.gov",
"code": "Q42T66VG0C",
"display": "PENICILLIN G"}],
"text": "PENICILLIN G"},
"patient": {"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Patient/Tbt3KuCY0B5PSrJvCu2j-PlK.aiHsu2xUjUM8bWpetXoB",
"display": "Jason Argonaut"},
"onsetDateTime": "2012-11-07T00:00:00Z",
"recordedDate": "2015-08-25T02:11:36",
"recorder": {"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Practitioner/TItWfhjChtlo0pFh9nzctSQB",
"display": "MOORE, NICK"},
"reaction": [{"extension": [{"url": "http://hl7.org/fhir/AllergyIntolerance-r2-certainty",
"valueString": "confirmed"}],
"manifestation": [{"text": "Hives"}],
"onset": "2012-11-07T00:00:00"}]}

20
org.hl7.fhir.convertors/src/test/resources/1_allergy_intolerance_10.json Normal file
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{"resourceType": "AllergyIntolerance",
"recordedDate": "2015-11-07T22:56:34",
"status": "confirmed",
"criticality": "CRITH",
"id": "TKebKfLXzu6Sp.LY-IpvpmQB",
"onset": "2014-03-07T00:00:00Z",
"recorder": {"display": "MOORE, NICK",
"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Practitioner/TItWfhjChtlo0pFh9nzctSQB"},
"patient": {"display": "Jason Argonaut",
"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Patient/Tbt3KuCY0B5PSrJvCu2j-PlK.aiHsu2xUjUM8bWpetXoB"},
"substance": {"text": "STRAWBERRY",
"coding": [{"system": "http://www.nlm.nih.gov/research/umls/rxnorm",
"code": "892484",
"display": "STRAWBERRY"},
{"system": "http://fdasis.nlm.nih.gov",
"code": "4J2TY8Y81V",
"display": "STRAWBERRY"}]},
"reaction": [{"certainty": "confirmed",
"onset": "2014-03-07T00:00:00Z",
"manifestation": [{"text": "Anaphylaxis"}]}]}

22
org.hl7.fhir.convertors/src/test/resources/1_allergy_intolerance_30.json Normal file
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{"resourceType": "AllergyIntolerance",
"id": "TKebKfLXzu6Sp.LY-IpvpmQB",
"clinicalStatus": "active",
"verificationStatus": "confirmed",
"criticality": "high",
"code": {"coding": [{"system": "http://www.nlm.nih.gov/research/umls/rxnorm",
"code": "892484",
"display": "STRAWBERRY"},
{"system": "http://fdasis.nlm.nih.gov",
"code": "4J2TY8Y81V",
"display": "STRAWBERRY"}],
"text": "STRAWBERRY"},
"patient": {"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Patient/Tbt3KuCY0B5PSrJvCu2j-PlK.aiHsu2xUjUM8bWpetXoB",
"display": "Jason Argonaut"},
"onsetDateTime": "2014-03-07T00:00:00",
"assertedDate": "2015-11-07T22:56:34",
"recorder": {"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Practitioner/TItWfhjChtlo0pFh9nzctSQB",
"display": "MOORE, NICK"},
"reaction": [{"extension": [{"url": "http://hl7.org/fhir/AllergyIntolerance-r2-certainty",
"valueString": "confirmed"}],
"manifestation": [{"text": "Anaphylaxis"}],
"onset": "2014-03-07T00:00:00"}]}

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org.hl7.fhir.convertors/src/test/resources/1_allergy_intolerance_40.json Normal file
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{"resourceType": "AllergyIntolerance",
"clinicalStatus": {"coding": [{"system": "http://terminology.hl7.org/CodeSystem/allergyintolerance-clinical",
"code": "confirmed"}]},
"verificationStatus": {"coding": [{"system": "http://terminology.hl7.org/CodeSystem/allergyintolerance-verification",
"code": "confirmed"}]},
"criticality": "high",
"code": {"coding": [{"system": "http://www.nlm.nih.gov/research/umls/rxnorm",
"code": "892484",
"display": "STRAWBERRY"},
{"system": "http://fdasis.nlm.nih.gov",
"code": "4J2TY8Y81V",
"display": "STRAWBERRY"}],
"text": "STRAWBERRY"},
"patient": {"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Patient/Tbt3KuCY0B5PSrJvCu2j-PlK.aiHsu2xUjUM8bWpetXoB",
"display": "Jason Argonaut"},
"onsetDateTime": "2014-03-07T00:00:00Z",
"recordedDate": "2015-11-07T22:56:34",
"recorder": {"reference": "https://open-ic.epic.com/Argonaut/api/FHIR/DSTU2/Practitioner/TItWfhjChtlo0pFh9nzctSQB",
"display": "MOORE, NICK"},
"reaction": [{"extension": [{"url": "http://hl7.org/fhir/AllergyIntolerance-r2-certainty",
"valueString": "confirmed"}],
"manifestation": [{"text": "Anaphylaxis"}],
"onset": "2014-03-07T00:00:00"}]}