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* Fix count on erroneous element defintions when generating snapshots

Browse Source 
* add version specific access to context resources
* enforce minValue and maxValue for decimal and Quantity types
This commit is contained in:
Grahame Grieve 2021-12-09 08:20:56 +11:00
commit ccdb0c434f
27 changed files with 177 additions and 58 deletions
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17
RELEASE_NOTES.md
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@ -1,8 +1,9 @@
Validator:
* no changes (yet)
Other code changes:
* remove relative URL prefixing
* Add delayed load resources to all resources
* Don't load resources from core examples package over other resources
Validator:
* no changes (yet)
Other code changes:
* Fix trailing slashes for JAVA_HOME tests
* remove relative URL prefixing
* Add delayed load resources to all resources
* Don't load resources from core examples package over other resources

2
org.hl7.fhir.convertors/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.6-SNAPSHOT</version>
<version>5.6.8-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
org.hl7.fhir.convertors/src/main/java/org/hl7/fhir/convertors/loaders/loaderR5/R4ToR5Loader.java
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@ -1,7 +1,5 @@
package org.hl7.fhir.convertors.loaders.loaderR5;
import org.apache.http.auth.AuthScheme;
/*
Copyright (c) 2011+, HL7, Inc.
All rights reserved.

2
org.hl7.fhir.dstu2/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.6-SNAPSHOT</version>
<version>5.6.8-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
org.hl7.fhir.dstu2016may/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.6-SNAPSHOT</version>
<version>5.6.8-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
org.hl7.fhir.dstu3/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.6-SNAPSHOT</version>
<version>5.6.8-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
org.hl7.fhir.r4/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.6-SNAPSHOT</version>
<version>5.6.8-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
org.hl7.fhir.r5/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.6-SNAPSHOT</version>
<version>5.6.8-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/conformance/ProfileUtilities.java
View File

@ -691,8 +691,8 @@ public class ProfileUtilities extends TranslatingUtilities {
}
if (!e.hasUserData(GENERATED_IN_SNAPSHOT)) {
b.append(e.hasId() ? "id: "+e.getId() : "path: "+e.getPath());
ce++;
if (e.hasId()) {
ce++;
String msg = "No match found in the generated snapshot: check that the path and definitions are legal in the differential (including order)";
messages.add(new ValidationMessage(Source.ProfileValidator, ValidationMessage.IssueType.VALUE, url+"#"+e.getId(), msg, ValidationMessage.IssueSeverity.ERROR));
}

44
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/context/BaseWorkerContext.java
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@ -1279,8 +1279,12 @@ public abstract class BaseWorkerContext extends I18nBase implements IWorkerConte
return fetchResourceWithException(cls, uri, null);
}
@SuppressWarnings("unchecked")
public <T extends Resource> T fetchResourceWithException(Class<T> class_, String uri, CanonicalResource source) throws FHIRException {
return fetchResourceWithException(class_, uri, null, source);
}
@SuppressWarnings("unchecked")
public <T extends Resource> T fetchResourceWithException(Class<T> class_, String uri, String version, CanonicalResource source) throws FHIRException {
if (uri == null) {
return null;
}
@ -1290,7 +1294,6 @@ public abstract class BaseWorkerContext extends I18nBase implements IWorkerConte
}
synchronized (lock) {
String version = null;
if (uri.contains("|")) {
version = uri.substring(uri.lastIndexOf("|")+1);
uri = uri.substring(0, uri.lastIndexOf("|"));
@ -1338,10 +1341,23 @@ public abstract class BaseWorkerContext extends I18nBase implements IWorkerConte
if (questionnaires.has(uri)) {
return (T) questionnaires.get(uri, version);
}
if (uri.matches(Constants.URI_REGEX) && !uri.contains("ValueSet")) {
return null;
}
// it might be a special URL.
if (Utilities.isAbsoluteUrl(uri) || uri.startsWith("ValueSet/")) {
Resource res = null; // findTxValueSet(uri);
if (res != null) {
return (T) res;
}
}
for (Map<String, ResourceProxy> rt : allResourcesById.values()) {
for (ResourceProxy r : rt.values()) {
if (uri.equals(r.getUrl())) {
return (T) r.getResource();
if (version == null || version == r.getResource().getMeta().getVersionId()) {
return (T) r.getResource();
}
}
}
}
@ -1385,20 +1401,6 @@ public abstract class BaseWorkerContext extends I18nBase implements IWorkerConte
if (class_ == Questionnaire.class) {
return (T) questionnaires.get(uri, version);
}
if (class_ == null) {
if (uri.matches(Constants.URI_REGEX) && !uri.contains("ValueSet")) {
return null;
}
// it might be a special URL.
if (Utilities.isAbsoluteUrl(uri) || uri.startsWith("ValueSet/")) {
Resource res = null; // findTxValueSet(uri);
if (res != null) {
return (T) res;
}
}
return null;
}
if (supportedCodeSystems.contains(uri)) {
return null;
}
@ -1635,6 +1637,14 @@ public abstract class BaseWorkerContext extends I18nBase implements IWorkerConte
}
}
public <T extends Resource> T fetchResource(Class<T> class_, String uri, String version) {
try {
return fetchResourceWithException(class_, uri, version, null);
} catch (FHIRException e) {
throw new Error(e);
}
}
@Override
public <T extends Resource> boolean hasResource(Class<T> class_, String uri) {
try {

1
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/context/IWorkerContext.java
View File

@ -337,6 +337,7 @@ public interface IWorkerContext {
*/
public <T extends Resource> T fetchResource(Class<T> class_, String uri);
public <T extends Resource> T fetchResourceWithException(Class<T> class_, String uri) throws FHIRException;
public <T extends Resource> T fetchResource(Class<T> class_, String uri, String version);
/** has the same functionality as fetchResource, but passes in information about the source of the
* reference (this may affect resolution of version)

3
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/renderers/ListRenderer.java
View File

@ -59,7 +59,8 @@ public class ListRenderer extends ResourceRenderer {
shortForRef(td, list.get("subject"));
}
if (list.has("encounter")) {
shortForRef(td.tx("Encounter: "), list.get("encounter"));
td.tx("Encounter: ");
shortForRef(td, list.get("encounter"));
}
if (list.has("source")) {
td.tx("Source: ");

2
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/renderers/QuestionnaireRenderer.java
View File

@ -703,7 +703,7 @@ public class QuestionnaireRenderer extends TerminologyRenderer {
}
if (i.hasAnswerValueSet()) {
XhtmlNode ans = item(ul, "Answers");
if (Utilities.noString(i.getAnswerValueSet()) && i.getAnswerValueSet().startsWith("#")) {
if (!Utilities.noString(i.getAnswerValueSet()) && i.getAnswerValueSet().startsWith("#")) {
ValueSet vs = (ValueSet) q.getContained(i.getAnswerValueSet().substring(1));
if (vs == null) {
ans.tx(i.getAnswerValueSet());

16
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/renderers/ResourceRenderer.java
View File

@ -202,7 +202,7 @@ public abstract class ResourceRenderer extends DataRenderer {
}
// what to display: if text is provided, then that. if the reference was resolved, then show the name, or the generated narrative
String display = r.hasDisplayElement() ? r.getDisplay() : null;
String name = tr != null && tr.getResource() != null ? tr.getResource().getNameFromResource() : null;
String name = tr != null && tr.getResource() != null ? tr.getResource().getNameFromResource() : null;
if (display == null && (tr == null || tr.getResource() == null)) {
c.addText(r.getReference());
@ -214,6 +214,11 @@ public abstract class ResourceRenderer extends DataRenderer {
if ((tr == null || !tr.getReference().startsWith("#")) && name != null) {
x.addText(" \""+name+"\"");
}
if (r.hasExtension(ToolingExtensions.EXT_TARGET_ID)) {
x.addText("(#"+r.getExtensionString(ToolingExtensions.EXT_TARGET_ID)+")");
} else if (r.hasExtension(ToolingExtensions.EXT_TARGET_PATH)) {
x.addText("(#/"+r.getExtensionString(ToolingExtensions.EXT_TARGET_PATH)+")");
}
} else {
if (display != null) {
c.addText(display);
@ -272,6 +277,11 @@ public abstract class ResourceRenderer extends DataRenderer {
}
return null;
}
String version = null;
if (url.contains("/_history/")) {
version = url.substring(url.indexOf("/_history/")+10);
url = url.substring(0, url.indexOf("/_history/"));
}
if (rcontext != null) {
BundleEntryComponent bundleResource = rcontext.resolve(url);
@ -279,7 +289,7 @@ public abstract class ResourceRenderer extends DataRenderer {
String bundleUrl = "#" + bundleResource.getResource().getResourceType().name() + "_" + bundleResource.getResource().getId();
return new ResourceWithReference(bundleUrl, new ResourceWrapperDirect(this.context, bundleResource.getResource()));
}
org.hl7.fhir.r5.elementmodel.Element bundleElement = rcontext.resolveElement(url);
org.hl7.fhir.r5.elementmodel.Element bundleElement = rcontext.resolveElement(url, version);
if (bundleElement != null) {
String bundleUrl = null;
Element br = bundleElement.getNamedChild("resource");
@ -292,7 +302,7 @@ public abstract class ResourceRenderer extends DataRenderer {
}
}
Resource ae = getContext().getWorker().fetchResource(null, url);
Resource ae = getContext().getWorker().fetchResource(null, url, version);
if (ae != null)
return new ResourceWithReference(url, new ResourceWrapperDirect(this.context, ae));
else if (context.getResolver() != null) {

36
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/renderers/utils/Resolver.java
View File

@ -101,7 +101,7 @@ public class Resolver {
return null;
}
public org.hl7.fhir.r5.elementmodel.Element resolveElement(String value) {
public org.hl7.fhir.r5.elementmodel.Element resolveElement(String value, String version) {
if (value.startsWith("#")) {
if (resourceElement != null) {
for (org.hl7.fhir.r5.elementmodel.Element r : resourceElement.getChildrenByName("contained")) {
@ -115,10 +115,18 @@ public class Resolver {
if (containerElement != null) {
for (org.hl7.fhir.r5.elementmodel.Element be : containerElement.getChildren("entry")) {
org.hl7.fhir.r5.elementmodel.Element res = be.getNamedChild("resource");
if (value.equals(be.getChildValue("fullUrl")))
return be;
if (value.equals(res.fhirType()+"/"+res.getChildValue("id")))
return be;
if (res != null) {
if (value.equals(be.getChildValue("fullUrl"))) {
if (checkVersion(version, res)) {
return be;
}
}
if (value.equals(res.fhirType()+"/"+res.getChildValue("id"))) {
if (checkVersion(version, res)) {
return be;
}
}
}
}
}
}
@ -126,13 +134,27 @@ public class Resolver {
if (containerElement != null) {
for (org.hl7.fhir.r5.elementmodel.Element p : containerElement.getChildren("parameter")) {
org.hl7.fhir.r5.elementmodel.Element res = p.getNamedChild("resource");
if (res != null && value.equals(res.fhirType()+"/"+res.getChildValue("id")))
return p;
if (res != null && value.equals(res.fhirType()+"/"+res.getChildValue("id"))) {
if (checkVersion(version, res)) {
return p;
}
}
}
}
}
return null;
}
private boolean checkVersion(String version, org.hl7.fhir.r5.elementmodel.Element res) {
if (version == null) {
return true;
} else if (!res.hasChild("meta")) {
return false;
} else {
org.hl7.fhir.r5.elementmodel.Element meta = res.getNamedChild("meta");
return version.equals(meta.getChildValue("version"));
}
}
}
public static class ResourceWithReference {

2
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/utils/FHIRPathEngine.java
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@ -5539,7 +5539,7 @@ public class FHIRPathEngine {
throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_BAD_NAME, expr.getName());
}
} else if (expr.getKind() == Kind.Group) {
throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_BAD_SYNTAX_GROUP);
throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_BAD_SYNTAX_GROUP, expr.toString());
} else if (expr.getKind() == Kind.Constant) {
throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_BAD_SYNTAX_CONST);
}

2
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/utils/ToolingExtensions.java
View File

@ -195,6 +195,8 @@ public class ToolingExtensions {
public static final String EXT_XML_NAME = "http://hl7.org/fhir/StructureDefinition/elementdefinition-xml-name";
public static final String EXT_BINDING_STYLE = "http://hl7.org/fhir/StructureDefinition/elementdefinition-binding-style";
public static final String EXT_BINARY_FORMAT = "http://hl7.org/fhir/StructureDefinition/implementationguide-resource-format";
public static final String EXT_TARGET_ID = "http://hl7.org/fhir/StructureDefinition/targetElement";
public static final String EXT_TARGET_PATH = "http://hl7.org/fhir/StructureDefinition/targetPath";
// specific extension helpers

1
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/utils/client/network/Client.java
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@ -4,7 +4,6 @@ import okhttp3.Headers;
import okhttp3.MediaType;
import okhttp3.Request;
import okhttp3.RequestBody;
import okhttp3.logging.HttpLoggingInterceptor;
import org.hl7.fhir.r5.model.Bundle;
import org.hl7.fhir.r5.model.Resource;
import org.hl7.fhir.r5.utils.client.EFhirClientException;

2
org.hl7.fhir.report/pom.xml
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@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.6-SNAPSHOT</version>
<version>5.6.8-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
org.hl7.fhir.utilities/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.6-SNAPSHOT</version>
<version>5.6.8-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

32
org.hl7.fhir.utilities/src/main/java/org/hl7/fhir/utilities/i18n/I18nConstants.java
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@ -1,5 +1,6 @@
package org.hl7.fhir.utilities.i18n;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
public class I18nConstants {
@ -483,6 +484,8 @@ public class I18nConstants {
public static final String TYPE_SPECIFIC_CHECKS_DT_DECIMAL_CHARS = "TYPE_SPECIFIC_CHECKS_DT_DECIMAL_CHARS";
public static final String TYPE_SPECIFIC_CHECKS_DT_DECIMAL_RANGE = "Type_Specific_Checks_DT_Decimal_Range";
public static final String TYPE_SPECIFIC_CHECKS_DT_DECIMAL_VALID = "Type_Specific_Checks_DT_Decimal_Valid";
public static final String TYPE_SPECIFIC_CHECKS_DT_DECIMAL_GT = "Type_Specific_Checks_DT_Decimal_GT";
public static final String TYPE_SPECIFIC_CHECKS_DT_DECIMAL_LT = "Type_Specific_Checks_DT_Decimal_LT";
public static final String TYPE_SPECIFIC_CHECKS_DT_IDENTIFIER_IETF_SYSTEM_VALUE = "TYPE_SPECIFIC_CHECKS_DT_IDENTIFIER_IETF_SYSTEM_VALUE";
public static final String TYPE_SPECIFIC_CHECKS_DT_IDENTIFIER_SYSTEM = "Type_Specific_Checks_DT_Identifier_System";
public static final String TYPE_SPECIFIC_CHECKS_DT_ID_VALID = "Type_Specific_Checks_DT_ID_Valid";
@ -659,6 +662,35 @@ public class I18nConstants {
public static final String CODESYSTEM_CS_HL7_PRESENT_ELEMENT_SUPPL = "CODESYSTEM_CS_HL7_PRESENT_ELEMENT_SUPPL";
public static final String CODESYSTEM_CS_HL7_PRESENT_ELEMENT_SUPPL_WRONG = "CODESYSTEM_CS_HL7_PRESENT_ELEMENT_SUPPL_WRONG";
public static final String CODESYSTEM_CS_HL7_PRESENT_ELEMENT_SUPPL_MISSING = "CODESYSTEM_CS_HL7_PRESENT_ELEMENT_SUPPL_MISSING";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_NO_QTY = "TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_NO_QTY";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_SYSTEM_MISMATCH = "TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_SYSTEM_MISMATCH";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_CODE_MISMATCH = "TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_CODE_MISMATCH";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_MIN_NO_VALUE = "TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_MIN_NO_VALUE";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_VALUE_NO_VALUE = "TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_VALUE_NO_VALUE";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_MIN_NO_SYSTEM = "TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_MIN_NO_SYSTEM";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_VALUE_NO_SYSTEM = "TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_VALUE_NO_SYSTEM";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_MIN_NO_CODE = "TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_MIN_NO_CODE";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_VALUE_NO_CODE = "TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_VALUE_NO_CODE";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_NO_UCUM_SVC = "TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_NO_UCUM_SVC";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_MIN_NO_CONVERT = "TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_MIN_NO_CONVERT";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_VALUE_WRONG = "TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_VALUE_WRONG";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_VALUE_WRONG_UCUM = "TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_VALUE_WRONG_UCUM";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_NO_QTY = "TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_NO_QTY";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_SYSTEM_MISMATCH = "TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_SYSTEM_MISMATCH";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_CODE_MISMATCH = "TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_CODE_MISMATCH";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_MIN_NO_VALUE = "TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_MIN_NO_VALUE";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_VALUE_NO_VALUE = "TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_VALUE_NO_VALUE";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_MIN_NO_SYSTEM = "TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_MIN_NO_SYSTEM";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_VALUE_NO_SYSTEM = "TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_VALUE_NO_SYSTEM";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_MIN_NO_CODE = "TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_MIN_NO_CODE";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_VALUE_NO_CODE = "TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_VALUE_NO_CODE";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_NO_UCUM_SVC = "TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_NO_UCUM_SVC";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_MIN_NO_CONVERT = "TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_MIN_NO_CONVERT";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_VALUE_WRONG = "TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_VALUE_WRONG";
public static final String TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_VALUE_WRONG_UCUM = "TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_VALUE_WRONG_UCUM";
}

30
org.hl7.fhir.utilities/src/main/resources/Messages.properties
View File

@ -186,6 +186,8 @@ Type_Specific_Checks_DT_DateTime_Valid = Not a valid date/time ({0})
Type_Specific_Checks_DT_Date_Valid = Not a valid date ({0})
Type_Specific_Checks_DT_Decimal_Range = The value ''{0}'' is outside the range of commonly/reasonably supported decimals
Type_Specific_Checks_DT_Decimal_Valid = The value ''{0}'' is not a valid decimal
Type_Specific_Checks_DT_Decimal_GT = value is greater than permitted maximum value of {0}
Type_Specific_Checks_DT_Decimal_LT = value is less than permitted minimum value of {0}
Type_Specific_Checks_DT_ID_Valid = id value ''{0}'' is not valid
Type_Specific_Checks_DT_Identifier_System = Identifier.system must be an absolute reference, not a local reference
Type_Specific_Checks_DT_Instant_Valid = Not a valid instant ({0})
@ -571,7 +573,7 @@ FHIRPATH_DISCRIMINATOR_TYPE_NONE = illegal use of ofType() in discriminator - no
FHIRPATH_DISCRIMINATOR_TYPE_MULTIPLE = illegal use of ofType() in discriminator - Multiple possible types on {0}
FHIRPATH_DISCRIMINATOR_NO_CODE = illegal use of ofType() in discriminator - Type has no code on {0}
FHIRPATH_DISCRIMINATOR_BAD_NAME = illegal function name {0}() in discriminator
FHIRPATH_DISCRIMINATOR_BAD_SYNTAX_GROUP = illegal expression syntax in discriminator (group)
FHIRPATH_DISCRIMINATOR_BAD_SYNTAX_GROUP = illegal expression syntax in discriminator (group ''{0}'')
FHIRPATH_DISCRIMINATOR_BAD_SYNTAX_CONST = illegal expression syntax in discriminator (const)
FHIRPATH_DISCRIMINATOR_CANT_FIND = Unable to resolve discriminator in definitions: {0} in profile {1} on element {2}, looking in profile {3}
FHIRPATH_DISCRIMINATOR_CANT_FIND_EXTENSION = Unable to resolve discriminator {0} on {2} found in the definitions because the extension {1} wasn''t found in the profile {3}
@ -670,4 +672,30 @@ CODESYSTEM_CS_NONHL7_MISSING_ELEMENT = CodeSystems SHOULD have a stated value fo
CODESYSTEM_CS_HL7_PRESENT_ELEMENT_SUPPL = CodeSystems SHOULD NOT have a stated value for the {0} element when they are a supplement
CODESYSTEM_CS_HL7_PRESENT_ELEMENT_SUPPL_WRONG = CodeSystem Supplements SHALL have a content value of 'supplement'
CODESYSTEM_CS_HL7_PRESENT_ELEMENT_SUPPL_MISSING = CodeSystem Supplements with a content value of 'supplement' SHALL have a supplements elemnet that specifies which code system is being supplemented
TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_NO_QTY = Found {0} of type {2} in the profile validating a Quantity (so it must be a Quantity)
TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_SYSTEM_MISMATCH = The minValue in the profile has a system of {0} which is different to the system in the value {1} so the minimum value cannot be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_CODE_MISMATCH = The minValue in the profile has a system code of {0} which is different to the system code in the value {1} so the minimum value cannot be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_MIN_NO_VALUE = The minValue in the profile doesn't have an actual value, so the minimum value can't be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_VALUE_NO_VALUE = The quantity doesn't have an actual value, so the minimum value can't be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_MIN_NO_SYSTEM = The minValue in the profile has no system so the minimum value cannot be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_VALUE_NO_SYSTEM = The value has no system so the minimum value cannot be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_MIN_NO_CODE = The minValue in the profile has no code so the minimum value cannot be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_VALUE_NO_CODE = The value has no code so the minimum value cannot be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_NO_UCUM_SVC = There is no UCUM service, and the UCUM codes aren't identical, so the minimum value can't be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_MIN_NO_CONVERT = Unable to convert value {0} from unit {1} to minValue unit {2} based on UCUM definitions; minimum value is not valid
TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_VALUE_WRONG = The value in the instance ({2}) is less than the specified minimum value ({3})
TYPE_SPECIFIC_CHECKS_DT_QTY_MIN_VALUE_WRONG_UCUM = The value in the instance ({0} {1}) is less than the specified minValue ({2} {3}) after UCUM conversion
TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_NO_QTY = Found {0} of type {2} in the profile validating a Quantity (so it must be a Quantity)
TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_SYSTEM_MISMATCH = The maxValue in the profile has a system of {0} which is different to the system in the value {1} so the maximum value cannot be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_CODE_MISMATCH = The maxValue in the profile has a system code of {0} which is different to the system code in the value {1} so the maximum value cannot be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_MIN_NO_VALUE = The maxValue in the profile doesn't have an actual value, so the maximum value can't be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_VALUE_NO_VALUE = The quantity doesn't have an actual value, so the maximum value can't be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_MIN_NO_SYSTEM = The maxValue in the profile has no system so the maximum value cannot be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_VALUE_NO_SYSTEM = The value has no system so the maximum value cannot be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_MIN_NO_CODE = The maxValue in the profile has no code so the maximum value cannot be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_VALUE_NO_CODE = The value has no code so the maximum value cannot be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_NO_UCUM_SVC = There is no UCUM service, and the UCUM codes aren't identical, so the maximum value can't be checked
TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_MIN_NO_CONVERT = Unable to convert value {0} from unit {1} to maxValue unit {2} based on UCUM definitions; maximum value is not valid
TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_VALUE_WRONG = The value in the instance ({2}) is greater than the specified maximum value ({3})
TYPE_SPECIFIC_CHECKS_DT_QTY_MAX_VALUE_WRONG_UCUM = The value in the instance ({0} {1}) is greater than the specified maxValue ({2} {3}) after UCUM conversion

11
org.hl7.fhir.utilities/src/test/java/org/hl7/fhir/utilities/UtilitiesTest.java
View File

@ -22,17 +22,20 @@ class UtilitiesTest {
public static final String TEST_TXT = "test.txt";
private static final String getNormalizedJavaHomeDir() {
return System.getenv("JAVA_HOME") == null ? null : Paths.get(System.getenv("JAVA_HOME")).normalize().toString();
}
public static final String LINUX_TEMP_DIR = "/tmp/";
public static final String LINUX_USER_DIR = System.getProperty("user.home") + "/";
public static final String LINUX_JAVA_HOME = System.getenv("JAVA_HOME") + "/";
public static final String LINUX_JAVA_HOME = getNormalizedJavaHomeDir() + "/";
public static final String WIN_TEMP_DIR = "c:\\temp\\";
public static final String WIN_USER_DIR = System.getProperty("user.home") + "\\";
public static final String WIN_JAVA_HOME = System.getenv("JAVA_HOME") + "\\";
public static final String WIN_JAVA_HOME = getNormalizedJavaHomeDir() + "\\";
public static final String OSX_USER_DIR = System.getProperty("user.home") + "/";
public static final String OSX_JAVA_HOME = System.getenv("JAVA_HOME") == null ? null : Paths.get(System.getenv("JAVA_HOME")).normalize().toString() + "/";
public static final String OSX_JAVA_HOME = getNormalizedJavaHomeDir() + "/";
@Test
@DisplayName("Test Utilities.path maps temp directory correctly")
public void testTempDirPath() throws IOException {

2
org.hl7.fhir.validation.cli/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.6-SNAPSHOT</version>
<version>5.6.8-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
org.hl7.fhir.validation/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.6-SNAPSHOT</version>
<version>5.6.8-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

12
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/ValidationEngine.java
View File

@ -3,6 +3,9 @@ package org.hl7.fhir.validation;
import lombok.Getter;
import lombok.Setter;
import lombok.experimental.Accessors;
import org.fhir.ucum.UcumEssenceService;
import org.fhir.ucum.UcumException;
import org.hl7.fhir.convertors.factory.VersionConvertorFactory_10_50;
import org.hl7.fhir.convertors.factory.VersionConvertorFactory_14_50;
import org.hl7.fhir.convertors.factory.VersionConvertorFactory_30_50;
@ -227,6 +230,15 @@ public class ValidationEngine implements IValidatorResourceFetcher, IValidationP
context = SimpleWorkerContext.fromDefinitions(source, ValidatorUtils.loaderForVersion(version), new PackageVersion(src));
ValidatorUtils.grabNatives(getBinaries(), source, "http://hl7.org/fhir");
}
// ucum-essence.xml should be in the class path. if it's not, ask about how to sort this out
// on https://chat.fhir.org/#narrow/stream/179167-hapi
try {
ClassLoader classLoader = ValidationEngine.class.getClassLoader();
InputStream ue = classLoader.getResourceAsStream("ucum-essence.xml");
context.setUcumService(new UcumEssenceService(ue));
} catch (Exception e) {
throw new FHIRException("Error loading UCUM from embedded ucum-essence.xml: "+e.getMessage(), e);
}
initContext(tt);
}

2
pom.xml
View File

@ -14,7 +14,7 @@
HAPI FHIR
-->
<artifactId>org.hl7.fhir.core</artifactId>
<version>5.6.6-SNAPSHOT</version>
<version>5.6.8-SNAPSHOT</version>
<packaging>pom</packaging>
<properties>