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Merge pull request #1123 from hapifhir/gg-202302-fhirpath-check 

Gg 202302 fhirpath check
This commit is contained in:
Grahame Grieve 2023-02-18 17:29:47 +11:00 committed by GitHub
parent 34b1bd05c5 98f4a02789
commit d00a672f08
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GPG Key ID: 4AEE18F83AFDEB23
11 changed files with 186 additions and 73 deletions
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5
org.hl7.fhir.dstu2/src/main/java/org/hl7/fhir/dstu2/utils/ProfileUtilities.java
View File

@ -79,6 +79,7 @@ import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Cell;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Piece;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Row;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.TableGenerationMode;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.TableModel;
import org.hl7.fhir.utilities.xhtml.XhtmlNode;
import org.hl7.fhir.utilities.xml.SchematronWriter;
@ -1183,7 +1184,7 @@ public class ProfileUtilities {
public XhtmlNode generateExtensionTable(String defFile, StructureDefinition ed, String imageFolder, boolean inlineGraphics, boolean full, String corePath, Set<String> outputTracker) throws IOException, FHIRException {
HierarchicalTableGenerator gen = new HierarchicalTableGenerator(imageFolder, inlineGraphics);
TableModel model = gen.initNormalTable(corePath, false, true, ed.getId(), false);
TableModel model = gen.initNormalTable(corePath, false, true, ed.getId(), false, TableGenerationMode.XML);
boolean deep = false;
boolean vdeep = false;
@ -1447,7 +1448,7 @@ public class ProfileUtilities {
public XhtmlNode generateTable(String defFile, StructureDefinition profile, boolean diff, String imageFolder, boolean inlineGraphics, String profileBaseFileName, boolean snapshot, String corePath, Set<String> outputTracker) throws IOException, FHIRException {
assert(diff != snapshot);// check it's ok to get rid of one of these
HierarchicalTableGenerator gen = new HierarchicalTableGenerator(imageFolder, inlineGraphics);
TableModel model = gen.initNormalTable(corePath, false, true, profile.getId()+(diff ? "d" : "s"), false);
TableModel model = gen.initNormalTable(corePath, false, true, profile.getId()+(diff ? "d" : "s"), false, TableGenerationMode.XML);
List<ElementDefinition> list = diff ? profile.getDifferential().getElement() : profile.getSnapshot().getElement();
List<StructureDefinition> profiles = new ArrayList<StructureDefinition>();
profiles.add(profile);

5
org.hl7.fhir.dstu2016may/src/main/java/org/hl7/fhir/dstu2016may/utils/ProfileUtilities.java
View File

@ -80,6 +80,7 @@ import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Cell;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Piece;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Row;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.TableGenerationMode;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.TableModel;
import org.hl7.fhir.utilities.xhtml.XhtmlNode;
import org.hl7.fhir.utilities.xml.SchematronWriter;
@ -1184,7 +1185,7 @@ public class ProfileUtilities {
public XhtmlNode generateExtensionTable(String defFile, StructureDefinition ed, String imageFolder, boolean inlineGraphics, boolean full, String corePath, Set<String> outputTracker) throws IOException, FHIRException {
HierarchicalTableGenerator gen = new HierarchicalTableGenerator(imageFolder, inlineGraphics);
TableModel model = gen.initNormalTable(corePath, false, true, ed.getId(), false);
TableModel model = gen.initNormalTable(corePath, false, true, ed.getId(), false, TableGenerationMode.XML);
boolean deep = false;
boolean vdeep = false;
@ -1446,7 +1447,7 @@ public class ProfileUtilities {
public XhtmlNode generateTable(String defFile, StructureDefinition profile, boolean diff, String imageFolder, boolean inlineGraphics, String profileBaseFileName, boolean snapshot, String corePath, boolean logicalModel, Set<String> outputTracker) throws IOException, FHIRException {
assert(diff != snapshot);// check it's ok to get rid of one of these
HierarchicalTableGenerator gen = new HierarchicalTableGenerator(imageFolder, inlineGraphics);
TableModel model = gen.initNormalTable(corePath, false, true, profile.getId()+(diff ? "d" : "s"), false);
TableModel model = gen.initNormalTable(corePath, false, true, profile.getId()+(diff ? "d" : "s"), false, TableGenerationMode.XML);
List<ElementDefinition> list = diff ? profile.getDifferential().getElement() : profile.getSnapshot().getElement();
List<StructureDefinition> profiles = new ArrayList<StructureDefinition>();
profiles.add(profile);

5
org.hl7.fhir.dstu3/src/main/java/org/hl7/fhir/dstu3/conformance/ProfileUtilities.java
View File

@ -102,6 +102,7 @@ import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Cell;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Piece;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Row;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.TableGenerationMode;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.TableModel;
import org.hl7.fhir.utilities.xhtml.XhtmlNode;
import org.hl7.fhir.utilities.xml.SchematronWriter;
@ -1621,7 +1622,7 @@ public class ProfileUtilities extends TranslatingUtilities {
public XhtmlNode generateExtensionTable(String defFile, StructureDefinition ed, String imageFolder, boolean inlineGraphics, boolean full, String corePath, String imagePath, Set<String> outputTracker) throws IOException, FHIRException {
HierarchicalTableGenerator gen = new HierarchicalTableGenerator(imageFolder, inlineGraphics);
gen.setTranslator(getTranslator());
TableModel model = gen.initNormalTable(corePath, false, true, ed.getId(), false);
TableModel model = gen.initNormalTable(corePath, false, true, ed.getId(), false, TableGenerationMode.XML);
boolean deep = false;
String m = "";
@ -1990,7 +1991,7 @@ public class ProfileUtilities extends TranslatingUtilities {
assert(diff != snapshot);// check it's ok to get rid of one of these
HierarchicalTableGenerator gen = new HierarchicalTableGenerator(imageFolder, inlineGraphics);
gen.setTranslator(getTranslator());
TableModel model = gen.initNormalTable(corePath, false, true, profile.getId()+(diff ? "d" : "s"), false);
TableModel model = gen.initNormalTable(corePath, false, true, profile.getId()+(diff ? "d" : "s"), false, TableGenerationMode.XML);
List<ElementDefinition> list = diff ? profile.getDifferential().getElement() : profile.getSnapshot().getElement();
List<StructureDefinition> profiles = new ArrayList<StructureDefinition>();
profiles.add(profile);

5
org.hl7.fhir.r4/src/main/java/org/hl7/fhir/r4/conformance/ProfileUtilities.java
View File

@ -110,6 +110,7 @@ import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Cell;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Piece;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Row;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.TableGenerationMode;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.TableModel;
import org.hl7.fhir.utilities.xhtml.XhtmlNode;
import org.hl7.fhir.utilities.xml.SchematronWriter;
@ -2149,7 +2150,7 @@ public class ProfileUtilities extends TranslatingUtilities {
public XhtmlNode generateExtensionTable(String defFile, StructureDefinition ed, String imageFolder, boolean inlineGraphics, boolean full, String corePath, String imagePath, Set<String> outputTracker) throws IOException, FHIRException {
HierarchicalTableGenerator gen = new HierarchicalTableGenerator(imageFolder, inlineGraphics, true);
gen.setTranslator(getTranslator());
TableModel model = gen.initNormalTable(corePath, false, true, ed.getId(), false);
TableModel model = gen.initNormalTable(corePath, false, true, ed.getId(), false, TableGenerationMode.XML);
boolean deep = false;
String m = "";
@ -2519,7 +2520,7 @@ public class ProfileUtilities extends TranslatingUtilities {
assert(diff != snapshot);// check it's ok to get rid of one of these
HierarchicalTableGenerator gen = new HierarchicalTableGenerator(imageFolder, inlineGraphics, true);
gen.setTranslator(getTranslator());
TableModel model = gen.initNormalTable(corePath, false, true, profile.getId()+(diff ? "d" : "s"), false);
TableModel model = gen.initNormalTable(corePath, false, true, profile.getId()+(diff ? "d" : "s"), false, TableGenerationMode.XML);
List<ElementDefinition> list = diff ? profile.getDifferential().getElement() : profile.getSnapshot().getElement();
List<StructureDefinition> profiles = new ArrayList<StructureDefinition>();
profiles.add(profile);

5
org.hl7.fhir.r4b/src/main/java/org/hl7/fhir/r4b/conformance/ProfileUtilities.java
View File

@ -130,6 +130,7 @@ import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Cell;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Piece;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Row;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.TableGenerationMode;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.TableModel;
import org.hl7.fhir.utilities.xhtml.XhtmlNode;
import org.hl7.fhir.utilities.xml.SchematronWriter;
@ -3471,7 +3472,7 @@ public class ProfileUtilities extends TranslatingUtilities {
public XhtmlNode generateExtensionTable(String defFile, StructureDefinition ed, String imageFolder, boolean inlineGraphics, boolean full, String corePath, String imagePath, Set<String> outputTracker, RenderingContext rc) throws IOException, FHIRException {
HierarchicalTableGenerator gen = new HierarchicalTableGenerator(imageFolder, inlineGraphics, true);
gen.setTranslator(getTranslator());
TableModel model = gen.initNormalTable(corePath, false, true, ed.getId()+(full ? "f" : "n"), true);
TableModel model = gen.initNormalTable(corePath, false, true, ed.getId()+(full ? "f" : "n"), true, TableGenerationMode.XHTML);
boolean deep = false;
String m = "";
@ -3988,7 +3989,7 @@ public class ProfileUtilities extends TranslatingUtilities {
assert(diff != snapshot);// check it's ok to get rid of one of these
HierarchicalTableGenerator gen = new HierarchicalTableGenerator(imageFolder, inlineGraphics, true);
gen.setTranslator(getTranslator());
TableModel model = gen.initNormalTable(corePath, false, true, profile.getId()+(diff ? "d" : "s"), active);
TableModel model = gen.initNormalTable(corePath, false, true, profile.getId()+(diff ? "d" : "s"), active, active ? TableGenerationMode.XHTML : TableGenerationMode.XML);
List<ElementDefinition> list = new ArrayList<>();
if (diff)
list.addAll(profile.getDifferential().getElement());

8
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/context/ContextUtilities.java
View File

@ -42,6 +42,7 @@ public class ContextUtilities implements ProfileKnowledgeProvider {
private boolean ignoreProfileErrors;
private XVerExtensionManager xverManager;
private Map<String, String> oidCache = new HashMap<>();
private List<StructureDefinition> allStructuresList = new ArrayList<StructureDefinition>();
public ContextUtilities(IWorkerContext context) {
super();
@ -209,7 +210,7 @@ public class ContextUtilities implements ProfileKnowledgeProvider {
* @return a list of all structure definitions, with snapshots generated (if possible)
*/
public List<StructureDefinition> allStructures(){
List<StructureDefinition> result = new ArrayList<StructureDefinition>();
if (allStructuresList.isEmpty()) {
Set<StructureDefinition> set = new HashSet<StructureDefinition>();
for (StructureDefinition sd : getStructures()) {
if (!set.contains(sd)) {
@ -224,11 +225,12 @@ public class ContextUtilities implements ProfileKnowledgeProvider {
}
}
}
result.add(sd);
allStructuresList.add(sd);
set.add(sd);
}
}
return result;
}
return allStructuresList;
}
/**

23
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/model/TypeDetails.java
View File

@ -151,6 +151,7 @@ public class TypeDetails {
addType(pt);
return res;
}
public void addType(ProfiledType pt) {
for (ProfiledType et : types) {
if (et.uri.equals(pt.uri)) {
@ -176,6 +177,28 @@ public class TypeDetails {
types.add(pt);
}
public void addType(CollectionStatus status, ProfiledType pt) {
addType(pt);
if (collectionStatus == null) {
collectionStatus = status;
} else {
switch (status) {
case ORDERED:
if (collectionStatus == CollectionStatus.SINGLETON) {
collectionStatus = status;
}
break;
case SINGLETON:
break;
case UNORDERED:
collectionStatus = status;
break;
default:
break;
}
}
}
public void addTypes(Collection<String> names) {
for (String n : names)
addType(new ProfiledType(n));

4
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/renderers/DiagnosticReportRenderer.java
View File

@ -125,8 +125,12 @@ public class DiagnosticReportRenderer extends ResourceRenderer {
pw = getProperty(dr, "conclusion");
if (valued(pw)) {
if (pw.fhirType().equals("markdown")) {
render(x, pw.value());
} else {
render(x.para(), pw.value());
}
}
pw = getProperty(dr, "conclusionCode");
if (!valued(pw)) {

5
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/renderers/StructureDefinitionRenderer.java
View File

@ -77,6 +77,7 @@ import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Cell;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Piece;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Row;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.TableGenerationMode;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.TableModel;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.Title;
import org.hl7.fhir.utilities.xhtml.NodeType;
@ -324,7 +325,7 @@ public class StructureDefinitionRenderer extends ResourceRenderer {
model = initCustomTable(gen, corePath, false, true, profile.getId()+(diff ? "d" : "s"), rc.getRules() == GenerationRules.IG_PUBLISHER, columns);
break;
case SUMMARY:
model = gen.initNormalTable(corePath, false, true, profile.getId()+(diff ? "d" : "s"), rc.getRules() == GenerationRules.IG_PUBLISHER);
model = gen.initNormalTable(corePath, false, true, profile.getId()+(diff ? "d" : "s"), rc.getRules() == GenerationRules.IG_PUBLISHER, rc.getRules() == GenerationRules.IG_PUBLISHER ? TableGenerationMode.XHTML : TableGenerationMode.XML);
break;
default:
throw new Error("Unknown structure mode");
@ -2667,7 +2668,7 @@ public class StructureDefinitionRenderer extends ResourceRenderer {
public XhtmlNode generateExtensionTable(String defFile, StructureDefinition ed, String imageFolder, boolean inlineGraphics, boolean full, String corePath, String imagePath, Set<String> outputTracker, RenderingContext rc) throws IOException, FHIRException {
HierarchicalTableGenerator gen = new HierarchicalTableGenerator(imageFolder, inlineGraphics, true);
gen.setTranslator(getTranslator());
TableModel model = gen.initNormalTable(corePath, false, true, ed.getId()+(full ? "f" : "n"), true);
TableModel model = gen.initNormalTable(corePath, false, true, ed.getId()+(full ? "f" : "n"), true, TableGenerationMode.XHTML);
boolean deep = false;
String m = "";

114
org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/utils/FHIRPathEngine.java
View File

@ -386,6 +386,7 @@ public class FHIRPathEngine {
}
}
initFlags();
cu = new ContextUtilities(worker);
}
private void initFlags() {
@ -578,6 +579,22 @@ public class FHIRPathEngine {
* @if the path is not valid
*/
public TypeDetails check(Object appContext, String resourceType, String context, ExpressionNode expr) throws FHIRLexerException, PathEngineException, DefinitionException {
return check(appContext, resourceType, context, expr, null);
}
/**
* check that paths referred to in the ExpressionNode are valid
*
* xPathStartsWithValueRef is a hack work around for the fact that FHIR Path sometimes needs a different starting point than the xpath
*
* returns a list of the possible types that might be returned by executing the ExpressionNode against a particular context
*
* @param context - the logical type against which this path is applied
* @throws DefinitionException
* @throws PathEngineException
* @if the path is not valid
*/
public TypeDetails check(Object appContext, String resourceType, String context, ExpressionNode expr, Set<ElementDefinition> elementDependencies) throws FHIRLexerException, PathEngineException, DefinitionException {
// if context is a path that refers to a type, do that conversion now
TypeDetails types;
if (context == null) {
@ -610,7 +627,7 @@ public class FHIRPathEngine {
}
}
return executeType(new ExecutionTypeContext(appContext, resourceType, types, types), types, expr, true);
return executeType(new ExecutionTypeContext(appContext, resourceType, types, types), types, expr, elementDependencies, true);
}
private FHIRException makeExceptionPlural(Integer num, ExpressionNode holder, String constName, Object... args) {
@ -659,13 +676,13 @@ public class FHIRPathEngine {
}
}
return executeType(new ExecutionTypeContext(appContext, sd.getUrl(), types, types), types, expr, true);
return executeType(new ExecutionTypeContext(appContext, sd.getUrl(), types, types), types, expr, null, true);
}
public TypeDetails check(Object appContext, StructureDefinition sd, ExpressionNode expr) throws FHIRLexerException, PathEngineException, DefinitionException {
// if context is a path that refers to a type, do that conversion now
TypeDetails types = null; // this is a special case; the first path reference will have to resolve to something in the context
return executeType(new ExecutionTypeContext(appContext, sd == null ? null : sd.getUrl(), null, types), types, expr, true);
return executeType(new ExecutionTypeContext(appContext, sd == null ? null : sd.getUrl(), null, types), types, expr, null, true);
}
public TypeDetails check(Object appContext, String resourceType, String context, String expr) throws FHIRLexerException, PathEngineException, DefinitionException {
@ -1557,7 +1574,7 @@ public class FHIRPathEngine {
return new TypeDetails(CollectionStatus.SINGLETON, exp.getName());
}
private TypeDetails executeType(ExecutionTypeContext context, TypeDetails focus, ExpressionNode exp, boolean atEntry) throws PathEngineException, DefinitionException {
private TypeDetails executeType(ExecutionTypeContext context, TypeDetails focus, ExpressionNode exp, Set<ElementDefinition> elementDependencies, boolean atEntry) throws PathEngineException, DefinitionException {
TypeDetails result = new TypeDetails(null);
switch (exp.getKind()) {
case Name:
@ -1571,7 +1588,7 @@ public class FHIRPathEngine {
result.update(executeContextType(context, exp.getName(), exp));
} else {
for (String s : focus.getTypes()) {
result.update(executeType(s, exp, atEntry));
result.update(executeType(s, exp, atEntry, elementDependencies));
}
if (result.hasNoTypes()) {
throw makeException(exp, I18nConstants.FHIRPATH_UNKNOWN_NAME, exp.getName(), focus.describe());
@ -1579,7 +1596,7 @@ public class FHIRPathEngine {
}
break;
case Function:
result.update(evaluateFunctionType(context, focus, exp));
result.update(evaluateFunctionType(context, focus, exp, elementDependencies));
break;
case Unary:
result.addType(TypeDetails.FP_Integer);
@ -1590,12 +1607,12 @@ public class FHIRPathEngine {
result.update(resolveConstantType(context, exp.getConstant(), exp));
break;
case Group:
result.update(executeType(context, focus, exp.getGroup(), atEntry));
result.update(executeType(context, focus, exp.getGroup(), elementDependencies, atEntry));
}
exp.setTypes(result);
if (exp.getInner() != null) {
result = executeType(context, result, exp.getInner(), false);
result = executeType(context, result, exp.getInner(), elementDependencies, false);
}
if (exp.isProximal() && exp.getOperation() != null) {
@ -1606,7 +1623,7 @@ public class FHIRPathEngine {
if (last.getOperation() == Operation.Is || last.getOperation() == Operation.As) {
work = executeTypeName(context, focus, next, atEntry);
} else {
work = executeType(context, focus, next, atEntry);
work = executeType(context, focus, next, elementDependencies, atEntry);
}
result = operateTypes(result, last.getOperation(), work, last);
last = next;
@ -3102,12 +3119,12 @@ public class FHIRPathEngine {
return hostServices.resolveConstantType(context.appInfo, name);
}
private TypeDetails executeType(String type, ExpressionNode exp, boolean atEntry) throws PathEngineException, DefinitionException {
private TypeDetails executeType(String type, ExpressionNode exp, boolean atEntry, Set<ElementDefinition> elementDependencies) throws PathEngineException, DefinitionException {
if (atEntry && Character.isUpperCase(exp.getName().charAt(0)) && hashTail(type).equals(exp.getName())) { // special case for start up
return new TypeDetails(CollectionStatus.SINGLETON, type);
}
TypeDetails result = new TypeDetails(null);
getChildTypesByName(type, exp.getName(), result, exp);
getChildTypesByName(type, exp.getName(), result, exp, elementDependencies);
return result;
}
@ -3118,7 +3135,7 @@ public class FHIRPathEngine {
@SuppressWarnings("unchecked")
private TypeDetails evaluateFunctionType(ExecutionTypeContext context, TypeDetails focus, ExpressionNode exp) throws PathEngineException, DefinitionException {
private TypeDetails evaluateFunctionType(ExecutionTypeContext context, TypeDetails focus, ExpressionNode exp, Set<ElementDefinition> elementDependencies) throws PathEngineException, DefinitionException {
List<TypeDetails> paramTypes = new ArrayList<TypeDetails>();
if (exp.getFunction() == Function.Is || exp.getFunction() == Function.As || exp.getFunction() == Function.OfType) {
paramTypes.add(new TypeDetails(CollectionStatus.SINGLETON, TypeDetails.FP_String));
@ -3126,9 +3143,9 @@ public class FHIRPathEngine {
int i = 0;
for (ExpressionNode expr : exp.getParameters()) {
if (isExpressionParameter(exp, i)) {
paramTypes.add(executeType(changeThis(context, focus), focus, expr, true));
paramTypes.add(executeType(changeThis(context, focus), focus, expr, elementDependencies, true));
} else {
paramTypes.add(executeType(context, context.thisItem, expr, true));
paramTypes.add(executeType(context, context.thisItem, expr, elementDependencies, true));
}
i++;
}
@ -3159,11 +3176,11 @@ public class FHIRPathEngine {
case Where :
return focus;
case Select :
return anything(focus.getCollectionStatus());
return paramTypes.get(0);
case All :
return new TypeDetails(CollectionStatus.SINGLETON, TypeDetails.FP_Boolean);
case Repeat :
return anything(focus.getCollectionStatus());
return paramTypes.get(0); // this might be a little more complicated...
case Aggregate :
return anything(focus.getCollectionStatus());
case Item : {
@ -3572,7 +3589,7 @@ public class FHIRPathEngine {
private TypeDetails childTypes(TypeDetails focus, String mask, ExpressionNode expr) throws PathEngineException, DefinitionException {
TypeDetails result = new TypeDetails(CollectionStatus.UNORDERED);
for (String f : focus.getTypes()) {
getChildTypesByName(f, mask, result, expr);
getChildTypesByName(f, mask, result, expr, null);
}
return result;
}
@ -4011,6 +4028,7 @@ public class FHIRPathEngine {
}
private static final char[] HEX_ARRAY = "0123456789ABCDEF".toCharArray();
private ContextUtilities cu;
public static String bytesToHex(byte[] bytes) {
char[] hexChars = new char[bytes.length * 2];
for (int j = 0; j < bytes.length; j++) {
@ -5693,7 +5711,7 @@ public class FHIRPathEngine {
}
private void getChildTypesByName(String type, String name, TypeDetails result, ExpressionNode expr) throws PathEngineException, DefinitionException {
private void getChildTypesByName(String type, String name, TypeDetails result, ExpressionNode expr, Set<ElementDefinition> elementDependencies) throws PathEngineException, DefinitionException {
if (Utilities.noString(type)) {
throw makeException(expr, I18nConstants.FHIRPATH_NO_TYPE, "", "getChildTypesByName");
}
@ -5704,6 +5722,8 @@ public class FHIRPathEngine {
return;
}
if (type.equals(TypeDetails.FP_SimpleTypeInfo)) {
getSimpleTypeChildTypesByName(name, result);
} else if (type.equals(TypeDetails.FP_ClassInfo)) {
@ -5737,11 +5757,11 @@ public class FHIRPathEngine {
if (dt == null) {
throw makeException(expr, I18nConstants.FHIRPATH_NO_TYPE, ProfileUtilities.sdNs(t.getCode(), null), "getChildTypesByName");
}
addTypeAndDescendents(sdl, dt, new ContextUtilities(worker).allStructures());
addTypeAndDescendents(sdl, dt, cu.allStructures());
// also add any descendant types
}
} else {
addTypeAndDescendents(sdl, sd, new ContextUtilities(worker).allStructures());
addTypeAndDescendents(sdl, sd, cu.allStructures());
if (type.contains("#")) {
tail = type.substring(type.indexOf("#")+1);
tail = tail.substring(tail.indexOf("."));
@ -5753,7 +5773,17 @@ public class FHIRPathEngine {
if (name.equals("**")) {
assert(result.getCollectionStatus() == CollectionStatus.UNORDERED);
for (ElementDefinition ed : sdi.getSnapshot().getElement()) {
if (ed.getPath().startsWith(path))
if (ed.getPath().startsWith(path)) {
if (ed.hasContentReference()) {
String cpath = ed.getContentReference();
String tn = sdi.getType()+cpath;
if (!result.hasType(worker, tn)) {
if (elementDependencies != null) {
elementDependencies.add(ed);
}
getChildTypesByName(result.addType(tn), "**", result, expr, elementDependencies);
}
} else {
for (TypeRefComponent t : ed.getType()) {
if (t.hasCode() && t.getCodeElement().hasValue()) {
String tn = null;
@ -5765,11 +5795,19 @@ public class FHIRPathEngine {
if (t.getCode().equals("Resource")) {
for (String rn : worker.getResourceNames()) {
if (!result.hasType(worker, rn)) {
getChildTypesByName(result.addType(rn), "**", result, expr);
if (elementDependencies != null) {
elementDependencies.add(ed);
}
getChildTypesByName(result.addType(rn), "**", result, expr, elementDependencies);
}
}
} else if (!result.hasType(worker, tn)) {
getChildTypesByName(result.addType(tn), "**", result, expr);
if (elementDependencies != null) {
elementDependencies.add(ed);
}
getChildTypesByName(result.addType(tn), "**", result, expr, elementDependencies);
}
}
}
}
}
@ -5780,12 +5818,24 @@ public class FHIRPathEngine {
if (ed.getPath().startsWith(path) && !ed.getPath().substring(path.length()).contains("."))
for (TypeRefComponent t : ed.getType()) {
if (Utilities.noString(t.getCode())) { // Element.id or Extension.url
if (elementDependencies != null) {
elementDependencies.add(ed);
}
result.addType("System.string");
} else if (t.getCode().equals("Element") || t.getCode().equals("BackboneElement")) {
if (elementDependencies != null) {
elementDependencies.add(ed);
}
result.addType(sdi.getType()+"#"+ed.getPath());
} else if (t.getCode().equals("Resource")) {
if (elementDependencies != null) {
elementDependencies.add(ed);
}
result.addTypes(worker.getResourceNames());
} else {
if (elementDependencies != null) {
elementDependencies.add(ed);
}
result.addType(t.getCode());
}
}
@ -5795,12 +5845,18 @@ public class FHIRPathEngine {
ElementDefinitionMatch ed = getElementDefinition(sdi, path, isAllowPolymorphicNames(), expr);
if (ed != null) {
if (!Utilities.noString(ed.getFixedType()))
if (!Utilities.noString(ed.getFixedType())) {
if (elementDependencies != null) {
elementDependencies.add(ed.definition);
}
result.addType(ed.getFixedType());
else {
} else {
for (TypeRefComponent t : ed.getDefinition().getType()) {
if (Utilities.noString(t.getCode())) {
if (Utilities.existsInList(ed.getDefinition().getId(), "Element.id", "Extension.url") || Utilities.existsInList(ed.getDefinition().getBase().getPath(), "Resource.id", "Element.id", "Extension.url")) {
if (elementDependencies != null) {
elementDependencies.add(ed.definition);
}
result.addType(TypeDetails.FP_NS, "string");
}
break; // throw new PathEngineException("Illegal reference to primitive value attribute @ "+path);
@ -5810,6 +5866,9 @@ public class FHIRPathEngine {
if (t.getCode().equals("Element") || t.getCode().equals("BackboneElement")) {
pt = new ProfiledType(sdi.getUrl()+"#"+path);
} else if (t.getCode().equals("Resource")) {
if (elementDependencies != null) {
elementDependencies.add(ed.definition);
}
result.addTypes(worker.getResourceNames());
} else {
pt = new ProfiledType(t.getCode());
@ -5821,7 +5880,10 @@ public class FHIRPathEngine {
if (ed.getDefinition().hasBinding()) {
pt.addBinding(ed.getDefinition().getBinding());
}
result.addType(pt);
if (elementDependencies != null) {
elementDependencies.add(ed.definition);
}
result.addType(ed.definition.unbounded() ? CollectionStatus.ORDERED : CollectionStatus.SINGLETON, pt);
}
}
}

26
org.hl7.fhir.utilities/src/main/java/org/hl7/fhir/utilities/xhtml/HierarchicalTableGenerator.java
View File

@ -83,9 +83,14 @@ import org.commonmark.renderer.html.HtmlRenderer;
import org.hl7.fhir.exceptions.FHIRException;
import org.hl7.fhir.utilities.TranslatingUtilities;
import org.hl7.fhir.utilities.Utilities;
import org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.TableGenerationMode;
public class HierarchicalTableGenerator extends TranslatingUtilities {
public enum TableGenerationMode {
XML, XHTML
}
public static final String TEXT_ICON_REFERENCE = "Reference to another Resource";
public static final String TEXT_ICON_PRIMITIVE = "Primitive Data Type";
public static final String TEXT_ICON_KEY = "JSON Key Value";
@ -599,6 +604,8 @@ public class HierarchicalTableGenerator extends TranslatingUtilities {
*/
private boolean inLineGraphics;
private TableGenerationMode mode;
public HierarchicalTableGenerator() {
super();
}
@ -626,7 +633,9 @@ public class HierarchicalTableGenerator extends TranslatingUtilities {
checkSetup();
}
public TableModel initNormalTable(String prefix, boolean isLogical, boolean alternating, String id, boolean isActive) {
public TableModel initNormalTable(String prefix, boolean isLogical, boolean alternating, String id, boolean isActive, TableGenerationMode mode) {
this.mode = mode;
TableModel model = new TableModel(id, isActive);
model.setAlternating(alternating);
@ -686,12 +695,16 @@ public class HierarchicalTableGenerator extends TranslatingUtilities {
tr.setAttribute("style", "border: " + Integer.toString(1 + border) + "px #F0F0F0 solid; font-size: 11px; font-family: verdana; vertical-align: top");
XhtmlNode tc = null;
for (Title t : model.getTitles()) {
tc = renderCell(tr, t, "th", null, null, null, false, null, "white", 0, imagePath, border, outputTracker, model, null);
tc = renderCell(tr, t, "th", null, null, null, false, null, "white", 0, imagePath, border, outputTracker, model, null, true);
if (t.width != 0)
tc.setAttribute("style", "width: "+Integer.toString(t.width)+"px");
}
if (tc != null && model.getDocoRef() != null) {
XhtmlNode img = tc.addTag("span").setAttribute("style", "float: right").addTag("a").setAttribute("title", "Legend for this format").setAttribute("href", model.getDocoRef()).addTag("img");
XhtmlNode a = tc.addTag("span").setAttribute("style", "float: right").addTag("a").setAttribute("title", "Legend for this format").setAttribute("href", model.getDocoRef());
if (mode == TableGenerationMode.XHTML) {
a.setAttribute("no-external", "true");
}
XhtmlNode img = a.addTag("img");
img.setAttribute("alt", "doco").setAttribute("style", "background-color: inherit").setAttribute("src", model.getDocoImg());
if (model.isActive()) {
img.setAttribute("onLoad", "fhirTableInit(this)");
@ -732,7 +745,7 @@ public class HierarchicalTableGenerator extends TranslatingUtilities {
}
boolean first = true;
for (Cell t : r.getCells()) {
renderCell(tr, t, "td", first ? r.getIcon() : null, first ? r.getHint() : null, first ? indents : null, !r.getSubRows().isEmpty(), first ? r.getAnchor() : null, color, r.getLineColor(), imagePath, border, outputTracker, model, r);
renderCell(tr, t, "td", first ? r.getIcon() : null, first ? r.getHint() : null, first ? indents : null, !r.getSubRows().isEmpty(), first ? r.getAnchor() : null, color, r.getLineColor(), imagePath, border, outputTracker, model, r, first);
first = false;
}
table.addText("\r\n");
@ -751,7 +764,7 @@ public class HierarchicalTableGenerator extends TranslatingUtilities {
}
private XhtmlNode renderCell(XhtmlNode tr, Cell c, String name, String icon, String hint, List<Integer> indents, boolean hasChildren, String anchor, String color, int lineColor, String imagePath, int border, Set<String> outputTracker, TableModel table, Row row) throws IOException {
private XhtmlNode renderCell(XhtmlNode tr, Cell c, String name, String icon, String hint, List<Integer> indents, boolean hasChildren, String anchor, String color, int lineColor, String imagePath, int border, Set<String> outputTracker, TableModel table, Row row, boolean suppressExternals) throws IOException {
XhtmlNode tc = tr.addTag(name);
tc.setAttribute("class", "hierarchy");
if (c.span > 1) {
@ -837,6 +850,9 @@ public class HierarchicalTableGenerator extends TranslatingUtilities {
} else if (!Utilities.noString(p.getReference())) {
XhtmlNode a = addStyle(tc.addTag("a"), p);
a.setAttribute("href", p.getReference());
if (mode == TableGenerationMode.XHTML && suppressExternals) {
a.setAttribute("no-external", "true");
}
if (!Utilities.noString(p.getHint()))
a.setAttribute("title", p.getHint());
if (p.getText() != null) {