Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core
This commit is contained in:
commit
de79e47de6
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@ -14,11 +14,11 @@ import javax.xml.parsers.ParserConfigurationException;
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import org.hl7.fhir.exceptions.FHIRException;
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import org.hl7.fhir.exceptions.FHIRException;
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import org.hl7.fhir.r5.utils.EOperationOutcome;
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import org.hl7.fhir.r5.utils.EOperationOutcome;
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import org.hl7.fhir.utilities.SimpleHTTPClient;
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import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
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import org.hl7.fhir.utilities.TextFile;
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import org.hl7.fhir.utilities.TextFile;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
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import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
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import org.hl7.fhir.utilities.http.HTTPResult;
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import org.hl7.fhir.utilities.http.ManagedWebAccess;
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import org.hl7.fhir.utilities.json.model.JsonArray;
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import org.hl7.fhir.utilities.json.model.JsonArray;
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import org.hl7.fhir.utilities.json.model.JsonObject;
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import org.hl7.fhir.utilities.json.model.JsonObject;
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import org.hl7.fhir.utilities.json.parser.JsonParser;
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import org.hl7.fhir.utilities.json.parser.JsonParser;
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@ -233,8 +233,8 @@ public class PackageVisitor {
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JsonObject manifest = JsonParser.parseObjectFromUrl(repo+"/package.manifest.json");
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JsonObject manifest = JsonParser.parseObjectFromUrl(repo+"/package.manifest.json");
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File co = ManagedFileAccess.file(Utilities.path(cache, pid+"."+manifest.asString("date")+".tgz"));
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File co = ManagedFileAccess.file(Utilities.path(cache, pid+"."+manifest.asString("date")+".tgz"));
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if (!co.exists()) {
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if (!co.exists()) {
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SimpleHTTPClient fetcher = new SimpleHTTPClient();
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HTTPResult res = fetcher.get(repo+"/package.tgz?nocache=" + System.currentTimeMillis());
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HTTPResult res = ManagedWebAccess.get(repo+"/package.tgz?nocache=" + System.currentTimeMillis());
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res.checkThrowException();
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res.checkThrowException();
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TextFile.bytesToFile(res.getContent(), co);
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TextFile.bytesToFile(res.getContent(), co);
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}
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}
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@ -330,8 +330,8 @@ public class PackageVisitor {
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private void processFeed(Set<String> list, String str) throws IOException, ParserConfigurationException, SAXException {
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private void processFeed(Set<String> list, String str) throws IOException, ParserConfigurationException, SAXException {
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System.out.println("Feed "+str);
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System.out.println("Feed "+str);
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try {
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try {
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SimpleHTTPClient fetcher = new SimpleHTTPClient();
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HTTPResult res = fetcher.get(str+"?nocache=" + System.currentTimeMillis());
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HTTPResult res = ManagedWebAccess.get(str+"?nocache=" + System.currentTimeMillis());
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res.checkThrowException();
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res.checkThrowException();
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Document xml = XMLUtil.parseToDom(res.getContent());
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Document xml = XMLUtil.parseToDom(res.getContent());
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for (Element channel : XMLUtil.getNamedChildren(xml.getDocumentElement(), "channel")) {
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for (Element channel : XMLUtil.getNamedChildren(xml.getDocumentElement(), "channel")) {
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@ -40,11 +40,11 @@ import javax.xml.parsers.DocumentBuilderFactory;
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import org.hl7.fhir.convertors.misc.adl.ADLImporter;
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import org.hl7.fhir.convertors.misc.adl.ADLImporter;
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import org.hl7.fhir.utilities.SimpleHTTPClient;
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import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
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import org.hl7.fhir.utilities.TextFile;
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import org.hl7.fhir.utilities.TextFile;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
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import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
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import org.hl7.fhir.utilities.http.HTTPResult;
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import org.hl7.fhir.utilities.http.ManagedWebAccess;
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import org.hl7.fhir.utilities.xml.XMLUtil;
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import org.hl7.fhir.utilities.xml.XMLUtil;
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import org.w3c.dom.Document;
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import org.w3c.dom.Document;
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import org.w3c.dom.Element;
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import org.w3c.dom.Element;
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@ -125,8 +125,8 @@ public class CKMImporter {
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}
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}
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private Document loadXml(String address) throws Exception {
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private Document loadXml(String address) throws Exception {
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SimpleHTTPClient http = new SimpleHTTPClient();
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HTTPResult res = http.get(address, "application/xml");
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HTTPResult res = ManagedWebAccess.get(address, "application/xml");
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res.checkThrowException();
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res.checkThrowException();
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InputStream xml = new ByteArrayInputStream(res.getContent());
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InputStream xml = new ByteArrayInputStream(res.getContent());
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@ -25,10 +25,10 @@ import org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent;
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import org.hl7.fhir.r4.model.ValueSet.FilterOperator;
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import org.hl7.fhir.r4.model.ValueSet.FilterOperator;
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import org.hl7.fhir.r4.terminologies.CodeSystemUtilities;
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import org.hl7.fhir.r4.terminologies.CodeSystemUtilities;
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import org.hl7.fhir.r4.utils.ToolingExtensions;
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import org.hl7.fhir.r4.utils.ToolingExtensions;
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import org.hl7.fhir.utilities.SimpleHTTPClient;
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import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
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import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
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import org.hl7.fhir.utilities.http.HTTPResult;
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import org.hl7.fhir.utilities.http.ManagedWebAccess;
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import org.hl7.fhir.utilities.json.model.JsonElement;
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import org.hl7.fhir.utilities.json.model.JsonElement;
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import org.hl7.fhir.utilities.json.model.JsonObject;
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import org.hl7.fhir.utilities.json.model.JsonObject;
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import org.hl7.fhir.utilities.json.parser.JsonParser;
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import org.hl7.fhir.utilities.json.parser.JsonParser;
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@ -395,10 +395,7 @@ public class ICD11Generator {
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private JsonObject fetchJson(String source) throws IOException {
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private JsonObject fetchJson(String source) throws IOException {
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SimpleHTTPClient http = new SimpleHTTPClient();
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HTTPResult res = ManagedWebAccess.builder().withAccept("application/json").withHeader("API-Version", "v2").withHeader("Accept-Language", "en").get(source);
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http.addHeader("API-Version", "v2");
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http.addHeader("Accept-Language", "en");
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HTTPResult res = http.get(source, "application/json");
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res.checkThrowException();
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res.checkThrowException();
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return JsonParser.parseObject(res.getContent());
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return JsonParser.parseObject(res.getContent());
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}
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}
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@ -66,11 +66,11 @@ import org.hl7.fhir.r4.terminologies.ValueSetExpander.ValueSetExpansionOutcome;
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import org.hl7.fhir.r4.utils.DefinitionNavigator;
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import org.hl7.fhir.r4.utils.DefinitionNavigator;
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import org.hl7.fhir.r4.utils.ToolingExtensions;
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import org.hl7.fhir.r4.utils.ToolingExtensions;
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import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
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import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
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import org.hl7.fhir.utilities.SimpleHTTPClient;
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import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
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import org.hl7.fhir.utilities.TextFile;
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import org.hl7.fhir.utilities.TextFile;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
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import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
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import org.hl7.fhir.utilities.http.HTTPResult;
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import org.hl7.fhir.utilities.http.ManagedWebAccess;
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import org.hl7.fhir.utilities.validation.ValidationMessage;
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import org.hl7.fhir.utilities.validation.ValidationMessage;
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import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
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import org.hl7.fhir.utilities.validation.ValidationMessage.Source;
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@ -1383,8 +1383,8 @@ public class ProfileComparer {
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File f = ManagedFileAccess.file(local);
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File f = ManagedFileAccess.file(local);
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if (f.exists())
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if (f.exists())
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return TextFile.fileToString(f);
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return TextFile.fileToString(f);
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SimpleHTTPClient http = new SimpleHTTPClient();
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HTTPResult res = http.get(source);
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HTTPResult res = ManagedWebAccess.get(source);
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res.checkThrowException();
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res.checkThrowException();
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String result = TextFile.bytesToString(res.getContent());
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String result = TextFile.bytesToString(res.getContent());
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TextFile.stringToFile(result, f);
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TextFile.stringToFile(result, f);
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@ -22,13 +22,13 @@ import java.util.zip.ZipEntry;
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import java.util.zip.ZipInputStream;
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import java.util.zip.ZipInputStream;
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import java.util.zip.ZipOutputStream;
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import java.util.zip.ZipOutputStream;
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import org.hl7.fhir.utilities.SimpleHTTPClient;
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import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
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import org.hl7.fhir.utilities.IniFile;
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import org.hl7.fhir.utilities.IniFile;
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import org.hl7.fhir.utilities.TextFile;
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import org.hl7.fhir.utilities.TextFile;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.VersionUtilities;
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import org.hl7.fhir.utilities.VersionUtilities;
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import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
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import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
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import org.hl7.fhir.utilities.http.HTTPResult;
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import org.hl7.fhir.utilities.http.ManagedWebAccess;
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public class TerminologyCacheManager {
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public class TerminologyCacheManager {
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@ -87,8 +87,7 @@ public class TerminologyCacheManager {
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try {
|
try {
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System.out.println("Initialise terminology cache from " + source);
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System.out.println("Initialise terminology cache from " + source);
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SimpleHTTPClient http = new SimpleHTTPClient();
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HTTPResult res = ManagedWebAccess.get(source + "?nocache=" + System.currentTimeMillis());
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HTTPResult res = http.get(source + "?nocache=" + System.currentTimeMillis());
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res.checkThrowException();
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res.checkThrowException();
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unzip(new ByteArrayInputStream(res.getContent()), cacheFolder);
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unzip(new ByteArrayInputStream(res.getContent()), cacheFolder);
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} catch (Exception e) {
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} catch (Exception e) {
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@ -156,11 +155,10 @@ public class TerminologyCacheManager {
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// post it to
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// post it to
|
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String url = "https://tx.fhir.org/post/tx-cache/" + ghOrg + "/" + ghRepo + "/" + ghBranch + ".zip";
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String url = "https://tx.fhir.org/post/tx-cache/" + ghOrg + "/" + ghRepo + "/" + ghBranch + ".zip";
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System.out.println("Sending tx-cache to " + url + " (" + Utilities.describeSize(bs.toByteArray().length) + ")");
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System.out.println("Sending tx-cache to " + url + " (" + Utilities.describeSize(bs.toByteArray().length) + ")");
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SimpleHTTPClient http = new SimpleHTTPClient();
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http.setAuthenticationMode(SimpleHTTPClient.AuthenticationMode.BASIC);
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HTTPResult res = ManagedWebAccess.builder()
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http.setUsername(token.substring(0, token.indexOf(':')));
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.withBasicAuth(token.substring(0, token.indexOf(':')), token.substring(token.indexOf(':') + 1))
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http.setPassword(token.substring(token.indexOf(':') + 1));
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.withAccept("application/zip").put(url, bs.toByteArray(), null);
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HTTPResult res = http.put(url, "application/zip", bs.toByteArray(), null); // accept doesn't matter
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if (res.getCode() >= 300) {
|
if (res.getCode() >= 300) {
|
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System.out.println("sending cache failed: " + res.getCode());
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System.out.println("sending cache failed: " + res.getCode());
|
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} else {
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} else {
|
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|
@ -29,11 +29,11 @@ import org.hl7.fhir.r5.context.IWorkerContext;
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import org.hl7.fhir.r5.formats.IParser.OutputStyle;
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import org.hl7.fhir.r5.formats.IParser.OutputStyle;
|
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import org.hl7.fhir.r5.test.utils.TestingUtilities;
|
import org.hl7.fhir.r5.test.utils.TestingUtilities;
|
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import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
|
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
|
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import org.hl7.fhir.utilities.SimpleHTTPClient;
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import org.hl7.fhir.utilities.TextFile;
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
import org.hl7.fhir.utilities.VersionUtilities;
|
import org.hl7.fhir.utilities.VersionUtilities;
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
|
import org.hl7.fhir.utilities.http.HTTPResult;
|
||||||
|
import org.hl7.fhir.utilities.http.ManagedWebAccess;
|
||||||
import org.hl7.fhir.utilities.json.model.JsonArray;
|
import org.hl7.fhir.utilities.json.model.JsonArray;
|
||||||
import org.hl7.fhir.utilities.json.model.JsonElement;
|
import org.hl7.fhir.utilities.json.model.JsonElement;
|
||||||
import org.hl7.fhir.utilities.json.model.JsonElementType;
|
import org.hl7.fhir.utilities.json.model.JsonElementType;
|
||||||
|
@ -287,9 +287,7 @@ public class SHLParser extends ParserBase {
|
||||||
|
|
||||||
|
|
||||||
private HTTPResult fetchFile(String url, String ct) throws IOException {
|
private HTTPResult fetchFile(String url, String ct) throws IOException {
|
||||||
SimpleHTTPClient fetcher = new SimpleHTTPClient();
|
HTTPResult res = ManagedWebAccess.get(url, ct);
|
||||||
fetcher.addHeader("Accept", ct);
|
|
||||||
HTTPResult res = fetcher.get(url);
|
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
return res;
|
return res;
|
||||||
}
|
}
|
||||||
|
@ -298,10 +296,10 @@ public class SHLParser extends ParserBase {
|
||||||
if (testMode) {
|
if (testMode) {
|
||||||
return new HTTPResult(url, 200, "OK", "application/json", TextFile.streamToBytes(TestingUtilities.loadTestResourceStream("validator", "shlink.manifest.json")));
|
return new HTTPResult(url, 200, "OK", "application/json", TextFile.streamToBytes(TestingUtilities.loadTestResourceStream("validator", "shlink.manifest.json")));
|
||||||
}
|
}
|
||||||
SimpleHTTPClient fetcher = new SimpleHTTPClient();
|
|
||||||
JsonObject j = new JsonObject();
|
JsonObject j = new JsonObject();
|
||||||
j.add("recipient", "FHIR Validator");
|
j.add("recipient", "FHIR Validator");
|
||||||
HTTPResult res = fetcher.post(url, "application/json", org.hl7.fhir.utilities.json.parser.JsonParser.composeBytes(j), "application/json");
|
HTTPResult res = ManagedWebAccess.post(url, org.hl7.fhir.utilities.json.parser.JsonParser.composeBytes(j), "application/json", "application/json");
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
return res;
|
return res;
|
||||||
}
|
}
|
||||||
|
|
|
@ -294,7 +294,7 @@ public class DataRenderer extends Renderer implements CodeResolver {
|
||||||
if (system.equals("http://loinc.org"))
|
if (system.equals("http://loinc.org"))
|
||||||
return (context.formatMessage(RenderingContext.DATA_REND_LOINC));
|
return (context.formatMessage(RenderingContext.DATA_REND_LOINC));
|
||||||
if (system.startsWith("http://snomed.info"))
|
if (system.startsWith("http://snomed.info"))
|
||||||
return (context.formatMessage(RenderingContext.DATA_REND_SNOWMED));
|
return (context.formatMessage(RenderingContext.DATA_REND_SNOMED));
|
||||||
if (system.equals("http://www.nlm.nih.gov/research/umls/rxnorm"))
|
if (system.equals("http://www.nlm.nih.gov/research/umls/rxnorm"))
|
||||||
return (context.formatMessage(RenderingContext.DATA_REND_RXNORM));
|
return (context.formatMessage(RenderingContext.DATA_REND_RXNORM));
|
||||||
if (system.equals("http://hl7.org/fhir/sid/icd-9"))
|
if (system.equals("http://hl7.org/fhir/sid/icd-9"))
|
||||||
|
|
|
@ -22,13 +22,13 @@ import java.util.zip.ZipEntry;
|
||||||
import java.util.zip.ZipInputStream;
|
import java.util.zip.ZipInputStream;
|
||||||
import java.util.zip.ZipOutputStream;
|
import java.util.zip.ZipOutputStream;
|
||||||
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient;
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
|
|
||||||
import org.hl7.fhir.utilities.IniFile;
|
import org.hl7.fhir.utilities.IniFile;
|
||||||
import org.hl7.fhir.utilities.TextFile;
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
import org.hl7.fhir.utilities.VersionUtilities;
|
import org.hl7.fhir.utilities.VersionUtilities;
|
||||||
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
||||||
|
import org.hl7.fhir.utilities.http.HTTPResult;
|
||||||
|
import org.hl7.fhir.utilities.http.ManagedWebAccess;
|
||||||
|
|
||||||
public class TerminologyCacheManager {
|
public class TerminologyCacheManager {
|
||||||
|
|
||||||
|
@ -86,8 +86,7 @@ public class TerminologyCacheManager {
|
||||||
try {
|
try {
|
||||||
System.out.println("Initialise terminology cache from "+source);
|
System.out.println("Initialise terminology cache from "+source);
|
||||||
|
|
||||||
SimpleHTTPClient http = new SimpleHTTPClient();
|
HTTPResult res = ManagedWebAccess.get(source+"?nocache=" + System.currentTimeMillis());
|
||||||
HTTPResult res = http.get(source+"?nocache=" + System.currentTimeMillis());
|
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
unzip(new ByteArrayInputStream(res.getContent()), cacheFolder);
|
unzip(new ByteArrayInputStream(res.getContent()), cacheFolder);
|
||||||
} catch (Exception e) {
|
} catch (Exception e) {
|
||||||
|
@ -157,11 +156,10 @@ public class TerminologyCacheManager {
|
||||||
// post it to
|
// post it to
|
||||||
String url = "https://tx.fhir.org/post/tx-cache/"+ghOrg+"/"+ghRepo+"/"+ghBranch+".zip";
|
String url = "https://tx.fhir.org/post/tx-cache/"+ghOrg+"/"+ghRepo+"/"+ghBranch+".zip";
|
||||||
System.out.println("Sending tx-cache to "+url+" ("+Utilities.describeSize(bs.toByteArray().length)+")");
|
System.out.println("Sending tx-cache to "+url+" ("+Utilities.describeSize(bs.toByteArray().length)+")");
|
||||||
SimpleHTTPClient http = new SimpleHTTPClient();
|
HTTPResult res = ManagedWebAccess.builder()
|
||||||
http.setAuthenticationMode(SimpleHTTPClient.AuthenticationMode.BASIC);
|
.withBasicAuth(token.substring(0, token.indexOf(':')), token.substring(token.indexOf(':') + 1))
|
||||||
http.setUsername(token.substring(0, token.indexOf(':')));
|
.withAccept("application/zip").put(url, bs.toByteArray(), null);
|
||||||
http.setPassword(token.substring(token.indexOf(':')+1));
|
|
||||||
HTTPResult res = http.put(url, "application/zip", bs.toByteArray(), null); // accept doesn't matter
|
|
||||||
if (res.getCode() >= 300) {
|
if (res.getCode() >= 300) {
|
||||||
System.out.println("sending cache failed: "+res.getCode());
|
System.out.println("sending cache failed: "+res.getCode());
|
||||||
} else {
|
} else {
|
||||||
|
|
|
@ -0,0 +1,7 @@
|
||||||
|
package org.hl7.fhir.utilities.http;
|
||||||
|
|
||||||
|
public enum HTTPAuthenticationMode {
|
||||||
|
NONE,
|
||||||
|
BASIC,
|
||||||
|
TOKEN
|
||||||
|
}
|
|
@ -0,0 +1,62 @@
|
||||||
|
package org.hl7.fhir.utilities.http;
|
||||||
|
|
||||||
|
import java.io.IOException;
|
||||||
|
import java.nio.charset.StandardCharsets;
|
||||||
|
|
||||||
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
|
|
||||||
|
public class HTTPResult {
|
||||||
|
private int code;
|
||||||
|
private String contentType;
|
||||||
|
private byte[] content;
|
||||||
|
private String source;
|
||||||
|
private String message;
|
||||||
|
|
||||||
|
|
||||||
|
public HTTPResult(String source, int code, String message, String contentType, byte[] content) {
|
||||||
|
super();
|
||||||
|
this.source = source;
|
||||||
|
this.code = code;
|
||||||
|
this.contentType = contentType;
|
||||||
|
this.content = content;
|
||||||
|
this.message = message;
|
||||||
|
}
|
||||||
|
|
||||||
|
public int getCode() {
|
||||||
|
return code;
|
||||||
|
}
|
||||||
|
public String getContentType() {
|
||||||
|
return contentType;
|
||||||
|
}
|
||||||
|
public byte[] getContent() {
|
||||||
|
return content;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getSource() {
|
||||||
|
return source;
|
||||||
|
}
|
||||||
|
|
||||||
|
public void checkThrowException() throws IOException {
|
||||||
|
if (code >= 300) {
|
||||||
|
String filename = Utilities.path("[tmp]", "http-log", "fhir-http-"+(SimpleHTTPClient.nextCounter())+".log");
|
||||||
|
if (content == null || content.length == 0) {
|
||||||
|
HTTPResultException exception = new HTTPResultException(code, message, source, null);
|
||||||
|
throw new IOException(exception.message, exception);
|
||||||
|
} else {
|
||||||
|
Utilities.createDirectory(Utilities.path("[tmp]", "http-log"));
|
||||||
|
TextFile.bytesToFile(content, filename);
|
||||||
|
HTTPResultException exception = new HTTPResultException(code, message, source, filename);
|
||||||
|
throw new IOException(exception.message, exception);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getMessage() {
|
||||||
|
return message;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getContentAsString() {
|
||||||
|
return new String(content, StandardCharsets.UTF_8);
|
||||||
|
}
|
||||||
|
}
|
|
@ -0,0 +1,24 @@
|
||||||
|
package org.hl7.fhir.utilities.http;
|
||||||
|
|
||||||
|
public class HTTPResultException extends Exception{
|
||||||
|
public final int httpCode;
|
||||||
|
|
||||||
|
public final String message;
|
||||||
|
|
||||||
|
public final String url;
|
||||||
|
public final String logPath;
|
||||||
|
|
||||||
|
public HTTPResultException(int httpCode, String message, String url, String logPath) {
|
||||||
|
this.httpCode = httpCode;
|
||||||
|
this.message = message;
|
||||||
|
this.url = url;
|
||||||
|
this.logPath = logPath;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getMessage() {
|
||||||
|
return "Invalid HTTP response "+httpCode+" from "+url+" ("+message+") (" + (
|
||||||
|
logPath != null ? "Response in " + logPath : "No response content")
|
||||||
|
+ ")";
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
|
@ -0,0 +1,131 @@
|
||||||
|
package org.hl7.fhir.utilities.http;
|
||||||
|
|
||||||
|
/*
|
||||||
|
Copyright (c) 2011+, HL7, Inc.
|
||||||
|
All rights reserved.
|
||||||
|
|
||||||
|
Redistribution and use in source and binary forms, with or without modification,
|
||||||
|
are permitted provided that the following conditions are met:
|
||||||
|
|
||||||
|
* Redistributions of source code must retain the above copyright notice, this
|
||||||
|
list of conditions and the following disclaimer.
|
||||||
|
* Redistributions in binary form must reproduce the above copyright notice,
|
||||||
|
this list of conditions and the following disclaimer in the documentation
|
||||||
|
and/or other materials provided with the distribution.
|
||||||
|
* Neither the name of HL7 nor the names of its contributors may be used to
|
||||||
|
endorse or promote products derived from this software without specific
|
||||||
|
prior written permission.
|
||||||
|
|
||||||
|
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
|
||||||
|
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
||||||
|
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
|
||||||
|
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
|
||||||
|
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
|
||||||
|
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
|
||||||
|
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
|
||||||
|
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
|
||||||
|
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
|
||||||
|
POSSIBILITY OF SUCH DAMAGE.
|
||||||
|
|
||||||
|
*/
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
import java.io.File;
|
||||||
|
import java.io.FileInputStream;
|
||||||
|
import java.io.FileNotFoundException;
|
||||||
|
import java.io.FileOutputStream;
|
||||||
|
import java.io.IOException;
|
||||||
|
import java.io.InputStream;
|
||||||
|
import java.nio.file.Path;
|
||||||
|
import java.util.ArrayList;
|
||||||
|
import java.util.List;
|
||||||
|
import java.util.Map;
|
||||||
|
|
||||||
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
|
|
||||||
|
/**
|
||||||
|
* see security.md - manages access to the local file system by the FHIR HAPI Core library
|
||||||
|
*
|
||||||
|
* By using accessPolicy, allowedDomains and accessor, a host java application can control
|
||||||
|
* whether this library has direct access to the web (and which domains it is allowed to access),
|
||||||
|
* or whether the host application provides controlled access, or whether no access is allowed at all
|
||||||
|
* (in which case other information providers need to be provided)
|
||||||
|
*
|
||||||
|
* @author Grahame
|
||||||
|
*
|
||||||
|
*/
|
||||||
|
public class ManagedWebAccess {
|
||||||
|
|
||||||
|
public interface IWebAccessor {
|
||||||
|
HTTPResult get(String url, String accept, Map<String, String> headers) throws IOException;
|
||||||
|
HTTPResult post(String url, byte[] bytes, String contentType, String accept, Map<String, String> headers) throws IOException;
|
||||||
|
HTTPResult put(String url, byte[] bytes, String contentType, String accept, Map<String, String> headers) throws IOException;
|
||||||
|
}
|
||||||
|
|
||||||
|
public enum WebAccessPolicy {
|
||||||
|
DIRECT, // open access to the local file system, though access can be restricted only to files under the paths in AllowedPaths
|
||||||
|
MANAGED, // no access except by the FileSystemProxyProvider
|
||||||
|
PROHIBITED, // no access at all to File() services
|
||||||
|
}
|
||||||
|
|
||||||
|
private static WebAccessPolicy accessPolicy = WebAccessPolicy.DIRECT; // for legacy reasons
|
||||||
|
private static List<String> allowedDomains = new ArrayList<>();
|
||||||
|
private static IWebAccessor accessor;
|
||||||
|
private static String userAgent;
|
||||||
|
|
||||||
|
|
||||||
|
public static WebAccessPolicy getAccessPolicy() {
|
||||||
|
return accessPolicy;
|
||||||
|
}
|
||||||
|
|
||||||
|
public static void setAccessPolicy(WebAccessPolicy accessPolicy) {
|
||||||
|
ManagedWebAccess.accessPolicy = accessPolicy;
|
||||||
|
}
|
||||||
|
|
||||||
|
static boolean inAllowedPaths(String pathname) {
|
||||||
|
if (allowedDomains.isEmpty()) {
|
||||||
|
return true;
|
||||||
|
}
|
||||||
|
for (String s : allowedDomains) {
|
||||||
|
if (pathname.startsWith(s)) {
|
||||||
|
return true;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
return false;
|
||||||
|
}
|
||||||
|
|
||||||
|
public static String getUserAgent() {
|
||||||
|
return userAgent;
|
||||||
|
}
|
||||||
|
|
||||||
|
public static void setUserAgent(String userAgent) {
|
||||||
|
ManagedWebAccess.userAgent = userAgent;
|
||||||
|
}
|
||||||
|
|
||||||
|
public static IWebAccessor getAccessor() {
|
||||||
|
return accessor;
|
||||||
|
}
|
||||||
|
|
||||||
|
public static ManagedWebAccessBuilder builder() {
|
||||||
|
return new ManagedWebAccessBuilder(userAgent);
|
||||||
|
}
|
||||||
|
|
||||||
|
public static HTTPResult get(String url) throws IOException {
|
||||||
|
return builder().get(url);
|
||||||
|
}
|
||||||
|
|
||||||
|
public static HTTPResult get(String url, String accept) throws IOException {
|
||||||
|
return builder().withAccept(accept).get(url);
|
||||||
|
}
|
||||||
|
|
||||||
|
public static HTTPResult post(String url, byte[] content, String contentType, String accept) throws IOException {
|
||||||
|
return builder().withAccept(accept).post(url, content, contentType);
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
public static HTTPResult put(String url, byte[] content, String contentType, String accept) throws IOException {
|
||||||
|
return builder().withAccept(accept).put(url, content, contentType);
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
|
@ -0,0 +1,126 @@
|
||||||
|
package org.hl7.fhir.utilities.http;
|
||||||
|
|
||||||
|
import java.io.IOException;
|
||||||
|
import java.nio.charset.StandardCharsets;
|
||||||
|
import java.util.Base64;
|
||||||
|
import java.util.HashMap;
|
||||||
|
import java.util.Map;
|
||||||
|
|
||||||
|
|
||||||
|
public class ManagedWebAccessBuilder {
|
||||||
|
|
||||||
|
private String userAgent;
|
||||||
|
private HTTPAuthenticationMode authenticationMode;
|
||||||
|
private String username;
|
||||||
|
private String password;
|
||||||
|
private String token;
|
||||||
|
private String accept;
|
||||||
|
private Map<String, String> headers = new HashMap<String, String>();
|
||||||
|
|
||||||
|
public ManagedWebAccessBuilder(String userAgent) {
|
||||||
|
this.userAgent = userAgent;
|
||||||
|
}
|
||||||
|
|
||||||
|
public ManagedWebAccessBuilder withAccept(String accept) {
|
||||||
|
this.accept = accept;
|
||||||
|
return this;
|
||||||
|
}
|
||||||
|
|
||||||
|
public ManagedWebAccessBuilder withHeader(String name, String value) {
|
||||||
|
headers.put(name, value);
|
||||||
|
return this;
|
||||||
|
}
|
||||||
|
|
||||||
|
public ManagedWebAccessBuilder withBasicAuth(String username, String password) {
|
||||||
|
this.authenticationMode = HTTPAuthenticationMode.BASIC;
|
||||||
|
this.username = username;
|
||||||
|
this.password = password;
|
||||||
|
return this;
|
||||||
|
}
|
||||||
|
|
||||||
|
public ManagedWebAccessBuilder withToken(String token) {
|
||||||
|
this.authenticationMode = HTTPAuthenticationMode.TOKEN;
|
||||||
|
this.token = token;
|
||||||
|
return this;
|
||||||
|
}
|
||||||
|
|
||||||
|
private Map<String, String> headers() {
|
||||||
|
Map<String, String> headers = new HashMap<String, String>();
|
||||||
|
headers.putAll(this.headers);
|
||||||
|
if (authenticationMode == HTTPAuthenticationMode.TOKEN) {
|
||||||
|
headers.put("Authorization", "Bearer " + token);
|
||||||
|
} else if (authenticationMode == HTTPAuthenticationMode.BASIC) {
|
||||||
|
String auth = username+":"+password;
|
||||||
|
byte[] encodedAuth = Base64.getEncoder().encode(auth.getBytes(StandardCharsets.UTF_8));
|
||||||
|
headers.put("Authorization", "Basic " + new String(encodedAuth));
|
||||||
|
}
|
||||||
|
|
||||||
|
if (userAgent != null) {
|
||||||
|
headers.put("User-Agent", userAgent);
|
||||||
|
}
|
||||||
|
|
||||||
|
return headers;
|
||||||
|
}
|
||||||
|
|
||||||
|
private SimpleHTTPClient setupClient(String url) throws IOException {
|
||||||
|
if (!ManagedWebAccess.inAllowedPaths(url)) {
|
||||||
|
throw new IOException("The pathname '"+url+"' cannot be accessed by policy");
|
||||||
|
}
|
||||||
|
SimpleHTTPClient client = new SimpleHTTPClient();
|
||||||
|
if (userAgent != null) {
|
||||||
|
client.addHeader("User-Agent", userAgent);
|
||||||
|
}
|
||||||
|
if (username != null || token != null) {
|
||||||
|
client.setUsername(username);
|
||||||
|
client.setPassword(password);
|
||||||
|
client.setToken(token);
|
||||||
|
client.setAuthenticationMode(authenticationMode);
|
||||||
|
}
|
||||||
|
return client;
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
public HTTPResult get(String url) throws IOException {
|
||||||
|
switch (ManagedWebAccess.getAccessPolicy()) {
|
||||||
|
case DIRECT:
|
||||||
|
SimpleHTTPClient client = setupClient(url);
|
||||||
|
return client.get(url, accept);
|
||||||
|
case MANAGED:
|
||||||
|
return ManagedWebAccess.getAccessor().get(url, accept, headers());
|
||||||
|
case PROHIBITED:
|
||||||
|
throw new IOException("Access to the internet is not allowed by local security policy");
|
||||||
|
default:
|
||||||
|
throw new IOException("Internal Error");
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
public HTTPResult post(String url, byte[] content, String contentType) throws IOException {
|
||||||
|
switch (ManagedWebAccess.getAccessPolicy()) {
|
||||||
|
case DIRECT:
|
||||||
|
SimpleHTTPClient client = setupClient(url);
|
||||||
|
return client.post(url, contentType, content, accept);
|
||||||
|
case MANAGED:
|
||||||
|
return ManagedWebAccess.getAccessor().post(url, content, contentType, accept, headers());
|
||||||
|
case PROHIBITED:
|
||||||
|
throw new IOException("Access to the internet is not allowed by local security policy");
|
||||||
|
default:
|
||||||
|
throw new IOException("Internal Error");
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
public HTTPResult put(String url, byte[] content, String contentType) throws IOException {
|
||||||
|
switch (ManagedWebAccess.getAccessPolicy()) {
|
||||||
|
case DIRECT:
|
||||||
|
SimpleHTTPClient client = setupClient(url);
|
||||||
|
return client.put(url, contentType, content, accept);
|
||||||
|
case MANAGED:
|
||||||
|
return ManagedWebAccess.getAccessor().put(url, content, contentType, accept, headers());
|
||||||
|
case PROHIBITED:
|
||||||
|
throw new IOException("Access to the internet is not allowed by local security policy");
|
||||||
|
default:
|
||||||
|
throw new IOException("Internal Error");
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
|
@ -1,4 +1,4 @@
|
||||||
package org.hl7.fhir.utilities;
|
package org.hl7.fhir.utilities.http;
|
||||||
|
|
||||||
import java.io.IOException;
|
import java.io.IOException;
|
||||||
import java.net.HttpURLConnection;
|
import java.net.HttpURLConnection;
|
||||||
|
@ -12,6 +12,7 @@ import java.util.List;
|
||||||
import java.util.Map;
|
import java.util.Map;
|
||||||
|
|
||||||
import org.hl7.fhir.exceptions.FHIRException;
|
import org.hl7.fhir.exceptions.FHIRException;
|
||||||
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
import org.hl7.fhir.utilities.settings.FhirSettings;
|
import org.hl7.fhir.utilities.settings.FhirSettings;
|
||||||
|
|
||||||
import lombok.Getter;
|
import lombok.Getter;
|
||||||
|
@ -19,11 +20,6 @@ import lombok.Setter;
|
||||||
|
|
||||||
public class SimpleHTTPClient {
|
public class SimpleHTTPClient {
|
||||||
|
|
||||||
public enum AuthenticationMode {
|
|
||||||
NONE,
|
|
||||||
BASIC,
|
|
||||||
TOKEN
|
|
||||||
}
|
|
||||||
|
|
||||||
public static class Header {
|
public static class Header {
|
||||||
private String name;
|
private String name;
|
||||||
|
@ -44,88 +40,10 @@ public class SimpleHTTPClient {
|
||||||
private static final int MAX_REDIRECTS = 5;
|
private static final int MAX_REDIRECTS = 5;
|
||||||
private static int counter = 1;
|
private static int counter = 1;
|
||||||
|
|
||||||
public static class HTTPResultException extends Exception{
|
|
||||||
public final int httpCode;
|
|
||||||
|
|
||||||
public final String message;
|
|
||||||
|
|
||||||
public final String url;
|
|
||||||
public final String logPath;
|
|
||||||
|
|
||||||
public HTTPResultException(int httpCode, String message, String url, String logPath) {
|
|
||||||
this.httpCode = httpCode;
|
|
||||||
this.message = message;
|
|
||||||
this.url = url;
|
|
||||||
this.logPath = logPath;
|
|
||||||
}
|
|
||||||
|
|
||||||
public String getMessage() {
|
|
||||||
return "Invalid HTTP response "+httpCode+" from "+url+" ("+message+") (" + (
|
|
||||||
logPath != null ? "Response in " + logPath : "No response content")
|
|
||||||
+ ")";
|
|
||||||
}
|
|
||||||
|
|
||||||
}
|
|
||||||
|
|
||||||
public static class HTTPResult {
|
|
||||||
private int code;
|
|
||||||
private String contentType;
|
|
||||||
private byte[] content;
|
|
||||||
private String source;
|
|
||||||
private String message;
|
|
||||||
|
|
||||||
|
|
||||||
public HTTPResult(String source, int code, String message, String contentType, byte[] content) {
|
|
||||||
super();
|
|
||||||
this.source = source;
|
|
||||||
this.code = code;
|
|
||||||
this.contentType = contentType;
|
|
||||||
this.content = content;
|
|
||||||
this.message = message;
|
|
||||||
}
|
|
||||||
|
|
||||||
public int getCode() {
|
|
||||||
return code;
|
|
||||||
}
|
|
||||||
public String getContentType() {
|
|
||||||
return contentType;
|
|
||||||
}
|
|
||||||
public byte[] getContent() {
|
|
||||||
return content;
|
|
||||||
}
|
|
||||||
|
|
||||||
public String getSource() {
|
|
||||||
return source;
|
|
||||||
}
|
|
||||||
|
|
||||||
public void checkThrowException() throws IOException {
|
|
||||||
if (code >= 300) {
|
|
||||||
String filename = Utilities.path("[tmp]", "http-log", "fhir-http-"+(++counter)+".log");
|
|
||||||
if (content == null || content.length == 0) {
|
|
||||||
HTTPResultException exception = new HTTPResultException(code, message, source, null);
|
|
||||||
throw new IOException(exception.message, exception);
|
|
||||||
} else {
|
|
||||||
Utilities.createDirectory(Utilities.path("[tmp]", "http-log"));
|
|
||||||
TextFile.bytesToFile(content, filename);
|
|
||||||
HTTPResultException exception = new HTTPResultException(code, message, source, filename);
|
|
||||||
throw new IOException(exception.message, exception);
|
|
||||||
}
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
||||||
public String getMessage() {
|
|
||||||
return message;
|
|
||||||
}
|
|
||||||
|
|
||||||
public String getContentAsString() {
|
|
||||||
return new String(content, StandardCharsets.UTF_8);
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
||||||
private List<Header> headers = new ArrayList<>();
|
private List<Header> headers = new ArrayList<>();
|
||||||
|
|
||||||
@Getter @Setter
|
@Getter @Setter
|
||||||
private AuthenticationMode authenticationMode;
|
private HTTPAuthenticationMode authenticationMode;
|
||||||
|
|
||||||
@Getter @Setter
|
@Getter @Setter
|
||||||
private String username;
|
private String username;
|
||||||
|
@ -202,9 +120,9 @@ public class SimpleHTTPClient {
|
||||||
|
|
||||||
private void setAuthenticationHeader(HttpURLConnection c) {
|
private void setAuthenticationHeader(HttpURLConnection c) {
|
||||||
String authHeaderValue = null;
|
String authHeaderValue = null;
|
||||||
if (authenticationMode == AuthenticationMode.TOKEN) {
|
if (authenticationMode == HTTPAuthenticationMode.TOKEN) {
|
||||||
authHeaderValue = "Bearer " + new String(token);
|
authHeaderValue = "Bearer " + new String(token);
|
||||||
} else if (authenticationMode == AuthenticationMode.BASIC) {
|
} else if (authenticationMode == HTTPAuthenticationMode.BASIC) {
|
||||||
String auth = username+":"+password;
|
String auth = username+":"+password;
|
||||||
byte[] encodedAuth = Base64.getEncoder().encode(auth.getBytes(StandardCharsets.UTF_8));
|
byte[] encodedAuth = Base64.getEncoder().encode(auth.getBytes(StandardCharsets.UTF_8));
|
||||||
authHeaderValue = "Basic " + new String(encodedAuth);
|
authHeaderValue = "Basic " + new String(encodedAuth);
|
||||||
|
@ -254,5 +172,9 @@ public class SimpleHTTPClient {
|
||||||
return new HTTPResult(url, c.getResponseCode(), c.getResponseMessage(), c.getRequestProperty("Content-Type"), TextFile.streamToBytes(c.getResponseCode() >= 400 ? c.getErrorStream() : c.getInputStream()));
|
return new HTTPResult(url, c.getResponseCode(), c.getResponseMessage(), c.getRequestProperty("Content-Type"), TextFile.streamToBytes(c.getResponseCode() >= 400 ? c.getErrorStream() : c.getInputStream()));
|
||||||
}
|
}
|
||||||
|
|
||||||
|
public static int nextCounter() {
|
||||||
|
return ++counter;
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
}
|
}
|
|
@ -223,7 +223,7 @@ public class RenderingI18nContext extends I18nBase {
|
||||||
public static final String DATA_REND_MKDWN_LNK = "DATA_REND_MKDWN_LNK";
|
public static final String DATA_REND_MKDWN_LNK = "DATA_REND_MKDWN_LNK";
|
||||||
public static final String DATA_REND_UNRD_EX = "DATA_REND_UNRD_EX";
|
public static final String DATA_REND_UNRD_EX = "DATA_REND_UNRD_EX";
|
||||||
public static final String DATA_REND_LOINC = "DATA_REND_LOINC";
|
public static final String DATA_REND_LOINC = "DATA_REND_LOINC";
|
||||||
public static final String DATA_REND_SNOWMED = "DATA_REND_SNOWMED";
|
public static final String DATA_REND_SNOMED = "DATA_REND_SNOMED";
|
||||||
public static final String DATA_REND_RXNORM = "DATA_REND_RXNORM";
|
public static final String DATA_REND_RXNORM = "DATA_REND_RXNORM";
|
||||||
public static final String DATA_REND_ICD = "DATA_REND_ICD";
|
public static final String DATA_REND_ICD = "DATA_REND_ICD";
|
||||||
public static final String DATA_REND_DICOM = "DATA_REND_DICOM";
|
public static final String DATA_REND_DICOM = "DATA_REND_DICOM";
|
||||||
|
|
|
@ -40,10 +40,10 @@ import java.nio.charset.StandardCharsets;
|
||||||
import java.util.Map;
|
import java.util.Map;
|
||||||
import java.util.Stack;
|
import java.util.Stack;
|
||||||
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient;
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
|
|
||||||
import org.hl7.fhir.utilities.TextFile;
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
|
import org.hl7.fhir.utilities.http.HTTPResult;
|
||||||
|
import org.hl7.fhir.utilities.http.ManagedWebAccess;
|
||||||
|
|
||||||
import com.google.gson.Gson;
|
import com.google.gson.Gson;
|
||||||
import com.google.gson.GsonBuilder;
|
import com.google.gson.GsonBuilder;
|
||||||
|
@ -724,15 +724,13 @@ public class JsonTrackingParser {
|
||||||
}
|
}
|
||||||
|
|
||||||
public static JsonObject fetchJson(String source) throws IOException {
|
public static JsonObject fetchJson(String source) throws IOException {
|
||||||
SimpleHTTPClient fetcher = new SimpleHTTPClient();
|
HTTPResult res = ManagedWebAccess.get(source+"?nocache=" + System.currentTimeMillis(), "application/json, application/fhir+json");
|
||||||
HTTPResult res = fetcher.get(source+"?nocache=" + System.currentTimeMillis());
|
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
return parseJson(res.getContent());
|
return parseJson(res.getContent());
|
||||||
}
|
}
|
||||||
|
|
||||||
public static JsonArray fetchJsonArray(String source) throws IOException {
|
public static JsonArray fetchJsonArray(String source) throws IOException {
|
||||||
SimpleHTTPClient fetcher = new SimpleHTTPClient();
|
HTTPResult res = ManagedWebAccess.get(source+"?nocache=" + System.currentTimeMillis(), "application/json, application/fhir+json");
|
||||||
HTTPResult res = fetcher.get(source+"?nocache=" + System.currentTimeMillis());
|
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
return parseJsonArray(res.getContent());
|
return parseJsonArray(res.getContent());
|
||||||
}
|
}
|
||||||
|
|
|
@ -8,11 +8,11 @@ import java.io.OutputStream;
|
||||||
import java.nio.charset.StandardCharsets;
|
import java.nio.charset.StandardCharsets;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient;
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
|
|
||||||
import org.hl7.fhir.utilities.TextFile;
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
||||||
|
import org.hl7.fhir.utilities.http.HTTPResult;
|
||||||
|
import org.hl7.fhir.utilities.http.ManagedWebAccess;
|
||||||
import org.hl7.fhir.utilities.json.JsonException;
|
import org.hl7.fhir.utilities.json.JsonException;
|
||||||
import org.hl7.fhir.utilities.json.model.JsonArray;
|
import org.hl7.fhir.utilities.json.model.JsonArray;
|
||||||
import org.hl7.fhir.utilities.json.model.JsonBoolean;
|
import org.hl7.fhir.utilities.json.model.JsonBoolean;
|
||||||
|
@ -671,10 +671,8 @@ public class JsonParser {
|
||||||
}
|
}
|
||||||
|
|
||||||
private static byte[] fetch(String source) throws IOException {
|
private static byte[] fetch(String source) throws IOException {
|
||||||
SimpleHTTPClient fetcher = new SimpleHTTPClient();
|
|
||||||
fetcher.addHeader("Accept", "application/json, application/fhir+json");
|
|
||||||
String murl = source.contains("?") ? source+"&nocache=" + System.currentTimeMillis() : source+"?nocache=" + System.currentTimeMillis();
|
String murl = source.contains("?") ? source+"&nocache=" + System.currentTimeMillis() : source+"?nocache=" + System.currentTimeMillis();
|
||||||
HTTPResult res = fetcher.get(murl);
|
HTTPResult res = ManagedWebAccess.get(murl, "application/json, application/fhir+json");
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
return res.getContent();
|
return res.getContent();
|
||||||
}
|
}
|
||||||
|
|
|
@ -27,12 +27,12 @@ import lombok.With;
|
||||||
import org.apache.commons.io.FileUtils;
|
import org.apache.commons.io.FileUtils;
|
||||||
import org.hl7.fhir.exceptions.FHIRException;
|
import org.hl7.fhir.exceptions.FHIRException;
|
||||||
import org.hl7.fhir.utilities.IniFile;
|
import org.hl7.fhir.utilities.IniFile;
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient;
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
|
|
||||||
import org.hl7.fhir.utilities.TextFile;
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
import org.hl7.fhir.utilities.VersionUtilities;
|
import org.hl7.fhir.utilities.VersionUtilities;
|
||||||
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
||||||
|
import org.hl7.fhir.utilities.http.HTTPResult;
|
||||||
|
import org.hl7.fhir.utilities.http.ManagedWebAccess;
|
||||||
import org.hl7.fhir.utilities.json.model.JsonArray;
|
import org.hl7.fhir.utilities.json.model.JsonArray;
|
||||||
import org.hl7.fhir.utilities.json.model.JsonElement;
|
import org.hl7.fhir.utilities.json.model.JsonElement;
|
||||||
import org.hl7.fhir.utilities.json.model.JsonObject;
|
import org.hl7.fhir.utilities.json.model.JsonObject;
|
||||||
|
@ -658,8 +658,7 @@ public class FilesystemPackageCacheManager extends BasePackageCacheManager imple
|
||||||
|
|
||||||
private InputStream fetchFromUrlSpecific(String source, boolean optional) throws FHIRException {
|
private InputStream fetchFromUrlSpecific(String source, boolean optional) throws FHIRException {
|
||||||
try {
|
try {
|
||||||
SimpleHTTPClient http = new SimpleHTTPClient();
|
HTTPResult res = ManagedWebAccess.get(source);
|
||||||
HTTPResult res = http.get(source);
|
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
return new ByteArrayInputStream(res.getContent());
|
return new ByteArrayInputStream(res.getContent());
|
||||||
} catch (Exception e) {
|
} catch (Exception e) {
|
||||||
|
@ -803,9 +802,8 @@ public class FilesystemPackageCacheManager extends BasePackageCacheManager imple
|
||||||
}
|
}
|
||||||
|
|
||||||
private void loadFromBuildServer() throws IOException {
|
private void loadFromBuildServer() throws IOException {
|
||||||
SimpleHTTPClient http = new SimpleHTTPClient();
|
|
||||||
|
|
||||||
HTTPResult res = http.get("https://build.fhir.org/ig/qas.json?nocache=" + System.currentTimeMillis());
|
HTTPResult res = ManagedWebAccess.get("https://build.fhir.org/ig/qas.json?nocache=" + System.currentTimeMillis());
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
|
|
||||||
buildInfo = (JsonArray) JsonParser.parse(TextFile.bytesToString(res.getContent()));
|
buildInfo = (JsonArray) JsonParser.parse(TextFile.bytesToString(res.getContent()));
|
||||||
|
|
|
@ -68,11 +68,11 @@ import org.apache.commons.compress.compressors.gzip.GzipParameters;
|
||||||
import org.hl7.fhir.exceptions.FHIRException;
|
import org.hl7.fhir.exceptions.FHIRException;
|
||||||
import org.hl7.fhir.utilities.ByteProvider;
|
import org.hl7.fhir.utilities.ByteProvider;
|
||||||
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
|
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient;
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
|
|
||||||
import org.hl7.fhir.utilities.TextFile;
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
||||||
|
import org.hl7.fhir.utilities.http.HTTPResult;
|
||||||
|
import org.hl7.fhir.utilities.http.ManagedWebAccess;
|
||||||
import org.hl7.fhir.utilities.json.JsonException;
|
import org.hl7.fhir.utilities.json.JsonException;
|
||||||
import org.hl7.fhir.utilities.json.model.JsonArray;
|
import org.hl7.fhir.utilities.json.model.JsonArray;
|
||||||
import org.hl7.fhir.utilities.json.model.JsonElement;
|
import org.hl7.fhir.utilities.json.model.JsonElement;
|
||||||
|
@ -1443,8 +1443,7 @@ public class NpmPackage {
|
||||||
}
|
}
|
||||||
|
|
||||||
public static NpmPackage fromUrl(String source) throws IOException {
|
public static NpmPackage fromUrl(String source) throws IOException {
|
||||||
SimpleHTTPClient fetcher = new SimpleHTTPClient();
|
HTTPResult res = ManagedWebAccess.get(source+"?nocache=" + System.currentTimeMillis());
|
||||||
HTTPResult res = fetcher.get(source+"?nocache=" + System.currentTimeMillis());
|
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
return fromPackage(new ByteArrayInputStream(res.getContent()));
|
return fromPackage(new ByteArrayInputStream(res.getContent()));
|
||||||
}
|
}
|
||||||
|
|
|
@ -18,11 +18,13 @@ import javax.annotation.Nonnull;
|
||||||
import javax.annotation.Nullable;
|
import javax.annotation.Nullable;
|
||||||
|
|
||||||
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
|
import org.hl7.fhir.utilities.CommaSeparatedStringBuilder;
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient;
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
|
|
||||||
import org.hl7.fhir.utilities.TextFile;
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
import org.hl7.fhir.utilities.VersionUtilities;
|
import org.hl7.fhir.utilities.VersionUtilities;
|
||||||
|
import org.hl7.fhir.utilities.http.HTTPAuthenticationMode;
|
||||||
|
import org.hl7.fhir.utilities.http.HTTPResult;
|
||||||
|
import org.hl7.fhir.utilities.http.ManagedWebAccess;
|
||||||
|
import org.hl7.fhir.utilities.http.ManagedWebAccessBuilder;
|
||||||
import org.hl7.fhir.utilities.json.model.JsonArray;
|
import org.hl7.fhir.utilities.json.model.JsonArray;
|
||||||
import org.hl7.fhir.utilities.json.model.JsonObject;
|
import org.hl7.fhir.utilities.json.model.JsonObject;
|
||||||
import org.hl7.fhir.utilities.json.model.JsonProperty;
|
import org.hl7.fhir.utilities.json.model.JsonProperty;
|
||||||
|
@ -174,22 +176,17 @@ public class PackageClient {
|
||||||
}
|
}
|
||||||
|
|
||||||
private InputStream fetchUrl(String source, String accept) throws IOException {
|
private InputStream fetchUrl(String source, String accept) throws IOException {
|
||||||
SimpleHTTPClient http = getSimpleHTTPClient();
|
ManagedWebAccessBuilder client = ManagedWebAccess.builder().withAccept(accept);
|
||||||
HTTPResult res = http.get(source, accept);
|
if (server.getAuthenticationMode() == HTTPAuthenticationMode.TOKEN) {
|
||||||
|
client.withToken(server.getToken());
|
||||||
|
} else if (server.getAuthenticationMode() == HTTPAuthenticationMode.BASIC) {
|
||||||
|
client.withBasicAuth(server.getUsername(), server.getPassword());
|
||||||
|
}
|
||||||
|
HTTPResult res = client.get(source);
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
return new ByteArrayInputStream(res.getContent());
|
return new ByteArrayInputStream(res.getContent());
|
||||||
}
|
}
|
||||||
|
|
||||||
@Nonnull
|
|
||||||
private SimpleHTTPClient getSimpleHTTPClient() {
|
|
||||||
SimpleHTTPClient client = new SimpleHTTPClient();
|
|
||||||
client.setAuthenticationMode(server.getAuthenticationMode());
|
|
||||||
client.setUsername(server.getUsername());
|
|
||||||
client.setPassword(server.getPassword());
|
|
||||||
client.setToken(server.getToken());
|
|
||||||
return client;
|
|
||||||
}
|
|
||||||
|
|
||||||
private JsonObject fetchJson(String source) throws IOException {
|
private JsonObject fetchJson(String source) throws IOException {
|
||||||
String src = TextFile.streamToString(fetchUrl(source, "application/json"));
|
String src = TextFile.streamToString(fetchUrl(source, "application/json"));
|
||||||
//System.out.println(src);
|
//System.out.println(src);
|
||||||
|
|
|
@ -6,7 +6,8 @@ import java.util.stream.Collectors;
|
||||||
|
|
||||||
import javax.annotation.Nullable;
|
import javax.annotation.Nullable;
|
||||||
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient;
|
import org.hl7.fhir.utilities.http.HTTPAuthenticationMode;
|
||||||
|
import org.hl7.fhir.utilities.http.SimpleHTTPClient;
|
||||||
import org.hl7.fhir.utilities.settings.FhirSettings;
|
import org.hl7.fhir.utilities.settings.FhirSettings;
|
||||||
import org.hl7.fhir.utilities.settings.PackageServerPOJO;
|
import org.hl7.fhir.utilities.settings.PackageServerPOJO;
|
||||||
|
|
||||||
|
@ -22,14 +23,14 @@ public class PackageServer {
|
||||||
|
|
||||||
public PackageServer(String url) {
|
public PackageServer(String url) {
|
||||||
this.url = url;
|
this.url = url;
|
||||||
authenticationMode = SimpleHTTPClient.AuthenticationMode.NONE;
|
authenticationMode = HTTPAuthenticationMode.NONE;
|
||||||
serverType = PackageServerType.FHIR;
|
serverType = PackageServerType.FHIR;
|
||||||
}
|
}
|
||||||
|
|
||||||
private String url;
|
private String url;
|
||||||
|
|
||||||
@Getter
|
@Getter
|
||||||
private SimpleHTTPClient.AuthenticationMode authenticationMode;
|
private HTTPAuthenticationMode authenticationMode;
|
||||||
|
|
||||||
@Getter
|
@Getter
|
||||||
private PackageServerType serverType;
|
private PackageServerType serverType;
|
||||||
|
@ -76,9 +77,9 @@ public class PackageServer {
|
||||||
}
|
}
|
||||||
|
|
||||||
@Nullable
|
@Nullable
|
||||||
private static SimpleHTTPClient.AuthenticationMode getModeFromPOJO(PackageServerPOJO pojo) {
|
private static HTTPAuthenticationMode getModeFromPOJO(PackageServerPOJO pojo) {
|
||||||
if (pojo.getAuthenticationType().equalsIgnoreCase("basic")) return SimpleHTTPClient.AuthenticationMode.BASIC;
|
if (pojo.getAuthenticationType().equalsIgnoreCase("basic")) return HTTPAuthenticationMode.BASIC;
|
||||||
if (pojo.getAuthenticationType().equalsIgnoreCase("token")) return SimpleHTTPClient.AuthenticationMode.TOKEN;
|
if (pojo.getAuthenticationType().equalsIgnoreCase("token")) return HTTPAuthenticationMode.TOKEN;
|
||||||
return null;
|
return null;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@ -103,7 +104,7 @@ public class PackageServer {
|
||||||
return packageServer;
|
return packageServer;
|
||||||
}
|
}
|
||||||
|
|
||||||
public PackageServer withAuthenticationMode( SimpleHTTPClient.AuthenticationMode mode) {
|
public PackageServer withAuthenticationMode(HTTPAuthenticationMode mode) {
|
||||||
PackageServer packageServer = this.copy();
|
PackageServer packageServer = this.copy();
|
||||||
packageServer.authenticationMode = mode;
|
packageServer.authenticationMode = mode;
|
||||||
return packageServer;
|
return packageServer;
|
||||||
|
|
|
@ -135,6 +135,12 @@ public class FhirSettings {
|
||||||
: instance.fhirSettings.getProhibitNetworkAccess();
|
: instance.fhirSettings.getProhibitNetworkAccess();
|
||||||
}
|
}
|
||||||
|
|
||||||
|
/**
|
||||||
|
* See ManagedWebAccess and use that to control network access
|
||||||
|
*
|
||||||
|
* @param value
|
||||||
|
*/
|
||||||
|
@Deprecated
|
||||||
public static void setProhibitNetworkAccess(boolean value) {
|
public static void setProhibitNetworkAccess(boolean value) {
|
||||||
prohibitNetworkAccess = value;
|
prohibitNetworkAccess = value;
|
||||||
}
|
}
|
||||||
|
|
|
@ -230,7 +230,7 @@ CONC_MAP_PROP = Properties
|
||||||
DATA_REND_MKDWN_LNK = Unable to resolve markdown link
|
DATA_REND_MKDWN_LNK = Unable to resolve markdown link
|
||||||
DATA_REND_UNRD_EX = WARNING: Unrenderable Modifier Extension!
|
DATA_REND_UNRD_EX = WARNING: Unrenderable Modifier Extension!
|
||||||
DATA_REND_LOINC = LOINC
|
DATA_REND_LOINC = LOINC
|
||||||
DATA_REND_SNOWMED = SNOWMED CT
|
DATA_REND_SNOMED = SNOMED CT
|
||||||
DATA_REND_RXNORM = RxNorm
|
DATA_REND_RXNORM = RxNorm
|
||||||
DATA_REND_ICD = ICD-9
|
DATA_REND_ICD = ICD-9
|
||||||
DATA_REND_DICOM = DICOM
|
DATA_REND_DICOM = DICOM
|
||||||
|
|
|
@ -4,6 +4,8 @@ import static org.junit.jupiter.api.Assertions.assertTrue;
|
||||||
|
|
||||||
import java.io.IOException;
|
import java.io.IOException;
|
||||||
|
|
||||||
|
import org.hl7.fhir.utilities.http.HTTPResult;
|
||||||
|
import org.hl7.fhir.utilities.http.SimpleHTTPClient;
|
||||||
import org.junit.jupiter.api.Test;
|
import org.junit.jupiter.api.Test;
|
||||||
|
|
||||||
public class SimpleHTTPClientTest {
|
public class SimpleHTTPClientTest {
|
||||||
|
@ -13,7 +15,7 @@ public class SimpleHTTPClientTest {
|
||||||
SimpleHTTPClient http = new SimpleHTTPClient();
|
SimpleHTTPClient http = new SimpleHTTPClient();
|
||||||
String url = "https://hl7.org/fhir/us/core/package-list.json?nocache=" + System.currentTimeMillis();
|
String url = "https://hl7.org/fhir/us/core/package-list.json?nocache=" + System.currentTimeMillis();
|
||||||
|
|
||||||
SimpleHTTPClient.HTTPResult res = http.get(url, "application/json");
|
HTTPResult res = http.get(url, "application/json");
|
||||||
|
|
||||||
// System.out.println(res.getCode());
|
// System.out.println(res.getCode());
|
||||||
// System.out.println(new String(res.getContent(), StandardCharsets.UTF_8));
|
// System.out.println(new String(res.getContent(), StandardCharsets.UTF_8));
|
||||||
|
|
|
@ -9,7 +9,7 @@ import javax.annotation.Nonnull;
|
||||||
import javax.annotation.Nullable;
|
import javax.annotation.Nullable;
|
||||||
|
|
||||||
import org.hl7.fhir.exceptions.FHIRException;
|
import org.hl7.fhir.exceptions.FHIRException;
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient;
|
import org.hl7.fhir.utilities.http.HTTPAuthenticationMode;
|
||||||
import org.junit.jupiter.api.DisplayName;
|
import org.junit.jupiter.api.DisplayName;
|
||||||
import org.junit.jupiter.api.Test;
|
import org.junit.jupiter.api.Test;
|
||||||
|
|
||||||
|
@ -26,7 +26,7 @@ public class BasePackageCacheManagerTests {
|
||||||
server.enqueueDummyPackage();
|
server.enqueueDummyPackage();
|
||||||
|
|
||||||
PackageServer testServer = new PackageServer(packageServerUrl)
|
PackageServer testServer = new PackageServer(packageServerUrl)
|
||||||
.withAuthenticationMode(SimpleHTTPClient.AuthenticationMode.BASIC)
|
.withAuthenticationMode(HTTPAuthenticationMode.BASIC)
|
||||||
.withServerType(PackageServer.PackageServerType.NPM)
|
.withServerType(PackageServer.PackageServerType.NPM)
|
||||||
.withUsername(MockPackageServer.DUMMY_USERNAME)
|
.withUsername(MockPackageServer.DUMMY_USERNAME)
|
||||||
.withPassword(MockPackageServer.DUMMY_PASSWORD);
|
.withPassword(MockPackageServer.DUMMY_PASSWORD);
|
||||||
|
@ -57,11 +57,11 @@ public class BasePackageCacheManagerTests {
|
||||||
String packageServerBUrl = serverB.getPackageServerUrl();
|
String packageServerBUrl = serverB.getPackageServerUrl();
|
||||||
|
|
||||||
PackageServer testServerA = new PackageServer(packageServerAUrl)
|
PackageServer testServerA = new PackageServer(packageServerAUrl)
|
||||||
.withAuthenticationMode(SimpleHTTPClient.AuthenticationMode.BASIC)
|
.withAuthenticationMode(HTTPAuthenticationMode.BASIC)
|
||||||
.withServerType(PackageServer.PackageServerType.NPM);
|
.withServerType(PackageServer.PackageServerType.NPM);
|
||||||
|
|
||||||
PackageServer testServerB = new PackageServer(packageServerBUrl)
|
PackageServer testServerB = new PackageServer(packageServerBUrl)
|
||||||
.withAuthenticationMode(SimpleHTTPClient.AuthenticationMode.BASIC)
|
.withAuthenticationMode(HTTPAuthenticationMode.BASIC)
|
||||||
.withServerType(PackageServer.PackageServerType.NPM);
|
.withServerType(PackageServer.PackageServerType.NPM);
|
||||||
|
|
||||||
basePackageCacheManager.addPackageServer(testServerA);
|
basePackageCacheManager.addPackageServer(testServerA);
|
||||||
|
|
|
@ -10,7 +10,7 @@ import java.io.InputStream;
|
||||||
import java.nio.charset.StandardCharsets;
|
import java.nio.charset.StandardCharsets;
|
||||||
import java.util.Base64;
|
import java.util.Base64;
|
||||||
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient;
|
import org.hl7.fhir.utilities.http.HTTPAuthenticationMode;
|
||||||
import org.junit.jupiter.api.AfterEach;
|
import org.junit.jupiter.api.AfterEach;
|
||||||
import org.junit.jupiter.api.BeforeEach;
|
import org.junit.jupiter.api.BeforeEach;
|
||||||
import org.junit.jupiter.api.Test;
|
import org.junit.jupiter.api.Test;
|
||||||
|
@ -41,7 +41,7 @@ public class PackageServerTest {
|
||||||
server.enqueueDummyPackage();
|
server.enqueueDummyPackage();
|
||||||
|
|
||||||
PackageServer testServer = new PackageServer(packageServerUrl)
|
PackageServer testServer = new PackageServer(packageServerUrl)
|
||||||
.withAuthenticationMode(SimpleHTTPClient.AuthenticationMode.BASIC)
|
.withAuthenticationMode(HTTPAuthenticationMode.BASIC)
|
||||||
.withServerType(PackageServer.PackageServerType.NPM)
|
.withServerType(PackageServer.PackageServerType.NPM)
|
||||||
.withUsername(MockPackageServer.DUMMY_USERNAME)
|
.withUsername(MockPackageServer.DUMMY_USERNAME)
|
||||||
.withPassword(MockPackageServer.DUMMY_PASSWORD);
|
.withPassword(MockPackageServer.DUMMY_PASSWORD);
|
||||||
|
@ -74,7 +74,7 @@ public class PackageServerTest {
|
||||||
server.enqueueDummyPackage();
|
server.enqueueDummyPackage();
|
||||||
|
|
||||||
PackageServer testServer = new PackageServer(packageServerUrl)
|
PackageServer testServer = new PackageServer(packageServerUrl)
|
||||||
.withAuthenticationMode(SimpleHTTPClient.AuthenticationMode.TOKEN)
|
.withAuthenticationMode(HTTPAuthenticationMode.TOKEN)
|
||||||
.withServerType(PackageServer.PackageServerType.NPM)
|
.withServerType(PackageServer.PackageServerType.NPM)
|
||||||
.withToken(MockPackageServer.DUMMY_TOKEN);
|
.withToken(MockPackageServer.DUMMY_TOKEN);
|
||||||
PackageClient packageClient = new PackageClient(testServer);
|
PackageClient packageClient = new PackageClient(testServer);
|
||||||
|
|
|
@ -32,12 +32,12 @@ import org.hl7.fhir.r5.model.Resource;
|
||||||
import org.hl7.fhir.r5.utils.structuremap.StructureMapUtilities;
|
import org.hl7.fhir.r5.utils.structuremap.StructureMapUtilities;
|
||||||
import org.hl7.fhir.utilities.ByteProvider;
|
import org.hl7.fhir.utilities.ByteProvider;
|
||||||
import org.hl7.fhir.utilities.IniFile;
|
import org.hl7.fhir.utilities.IniFile;
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient;
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
|
|
||||||
import org.hl7.fhir.utilities.TextFile;
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
import org.hl7.fhir.utilities.VersionUtilities;
|
import org.hl7.fhir.utilities.VersionUtilities;
|
||||||
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
||||||
|
import org.hl7.fhir.utilities.http.HTTPResult;
|
||||||
|
import org.hl7.fhir.utilities.http.ManagedWebAccess;
|
||||||
import org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager;
|
import org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager;
|
||||||
import org.hl7.fhir.utilities.npm.NpmPackage;
|
import org.hl7.fhir.utilities.npm.NpmPackage;
|
||||||
import org.hl7.fhir.utilities.turtle.Turtle;
|
import org.hl7.fhir.utilities.turtle.Turtle;
|
||||||
|
@ -416,8 +416,7 @@ public class IgLoader implements IValidationEngineLoader {
|
||||||
|
|
||||||
private InputStream fetchFromUrlSpecific(String source, boolean optional) throws FHIRException, IOException {
|
private InputStream fetchFromUrlSpecific(String source, boolean optional) throws FHIRException, IOException {
|
||||||
try {
|
try {
|
||||||
SimpleHTTPClient http = new SimpleHTTPClient();
|
HTTPResult res = ManagedWebAccess.get(source + "?nocache=" + System.currentTimeMillis());
|
||||||
HTTPResult res = http.get(source + "?nocache=" + System.currentTimeMillis());
|
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
return new ByteArrayInputStream(res.getContent());
|
return new ByteArrayInputStream(res.getContent());
|
||||||
} catch (IOException e) {
|
} catch (IOException e) {
|
||||||
|
@ -561,14 +560,13 @@ public class IgLoader implements IValidationEngineLoader {
|
||||||
|
|
||||||
private byte[] fetchFromUrlSpecific(String source, String contentType, boolean optional, List<String> errors) throws FHIRException, IOException {
|
private byte[] fetchFromUrlSpecific(String source, String contentType, boolean optional, List<String> errors) throws FHIRException, IOException {
|
||||||
try {
|
try {
|
||||||
SimpleHTTPClient http = new SimpleHTTPClient();
|
|
||||||
try {
|
try {
|
||||||
// try with cache-busting option and then try withhout in case the server doesn't support that
|
// try with cache-busting option and then try withhout in case the server doesn't support that
|
||||||
HTTPResult res = http.get(source + "?nocache=" + System.currentTimeMillis(), contentType);
|
HTTPResult res = ManagedWebAccess.get(source + "?nocache=" + System.currentTimeMillis(), contentType);
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
return res.getContent();
|
return res.getContent();
|
||||||
} catch (Exception e) {
|
} catch (Exception e) {
|
||||||
HTTPResult res = http.get(source, contentType);
|
HTTPResult res = ManagedWebAccess.get(source, contentType);
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
return res.getContent();
|
return res.getContent();
|
||||||
}
|
}
|
||||||
|
|
|
@ -31,11 +31,11 @@ import org.hl7.fhir.r5.renderers.RendererFactory;
|
||||||
import org.hl7.fhir.r5.renderers.utils.RenderingContext;
|
import org.hl7.fhir.r5.renderers.utils.RenderingContext;
|
||||||
import org.hl7.fhir.r5.renderers.utils.RenderingContext.GenerationRules;
|
import org.hl7.fhir.r5.renderers.utils.RenderingContext.GenerationRules;
|
||||||
import org.hl7.fhir.r5.utils.EOperationOutcome;
|
import org.hl7.fhir.r5.utils.EOperationOutcome;
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient;
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
|
|
||||||
import org.hl7.fhir.utilities.TextFile;
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
||||||
|
import org.hl7.fhir.utilities.http.HTTPResult;
|
||||||
|
import org.hl7.fhir.utilities.http.ManagedWebAccess;
|
||||||
import org.hl7.fhir.utilities.validation.ValidationMessage;
|
import org.hl7.fhir.utilities.validation.ValidationMessage;
|
||||||
import org.hl7.fhir.utilities.xhtml.XhtmlComposer;
|
import org.hl7.fhir.utilities.xhtml.XhtmlComposer;
|
||||||
import org.hl7.fhir.validation.ValidatorUtils.SourceFile;
|
import org.hl7.fhir.validation.ValidatorUtils.SourceFile;
|
||||||
|
@ -318,8 +318,7 @@ public class Scanner {
|
||||||
}
|
}
|
||||||
|
|
||||||
protected void download(String address, String filename) throws IOException {
|
protected void download(String address, String filename) throws IOException {
|
||||||
SimpleHTTPClient http = new SimpleHTTPClient();
|
HTTPResult res = ManagedWebAccess.get(address);
|
||||||
HTTPResult res = http.get(address);
|
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
TextFile.bytesToFile(res.getContent(), filename);
|
TextFile.bytesToFile(res.getContent(), filename);
|
||||||
}
|
}
|
||||||
|
|
|
@ -82,13 +82,13 @@ import org.hl7.fhir.r5.utils.validation.constants.ReferenceValidationPolicy;
|
||||||
import org.hl7.fhir.utilities.FhirPublication;
|
import org.hl7.fhir.utilities.FhirPublication;
|
||||||
import org.hl7.fhir.utilities.IniFile;
|
import org.hl7.fhir.utilities.IniFile;
|
||||||
import org.hl7.fhir.utilities.SIDUtilities;
|
import org.hl7.fhir.utilities.SIDUtilities;
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient;
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
|
|
||||||
import org.hl7.fhir.utilities.TextFile;
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
import org.hl7.fhir.utilities.TimeTracker;
|
import org.hl7.fhir.utilities.TimeTracker;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
import org.hl7.fhir.utilities.VersionUtilities;
|
import org.hl7.fhir.utilities.VersionUtilities;
|
||||||
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
||||||
|
import org.hl7.fhir.utilities.http.HTTPResult;
|
||||||
|
import org.hl7.fhir.utilities.http.ManagedWebAccess;
|
||||||
import org.hl7.fhir.utilities.npm.CommonPackages;
|
import org.hl7.fhir.utilities.npm.CommonPackages;
|
||||||
import org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager;
|
import org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager;
|
||||||
import org.hl7.fhir.utilities.npm.NpmPackage;
|
import org.hl7.fhir.utilities.npm.NpmPackage;
|
||||||
|
@ -915,8 +915,7 @@ public class ValidationEngine implements IValidatorResourceFetcher, IValidationP
|
||||||
if (output.startsWith("http://")) {
|
if (output.startsWith("http://")) {
|
||||||
ByteArrayOutputStream bs = new ByteArrayOutputStream();
|
ByteArrayOutputStream bs = new ByteArrayOutputStream();
|
||||||
handleOutputToStream(r, output, bs, version);
|
handleOutputToStream(r, output, bs, version);
|
||||||
SimpleHTTPClient http = new SimpleHTTPClient();
|
HTTPResult res = ManagedWebAccess.post(output, bs.toByteArray(), "application/fhir+xml", "application/fhir+xml");
|
||||||
HTTPResult res = http.post(output, "application/fhir+xml", bs.toByteArray(), "application/fhir+xml");
|
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
} else {
|
} else {
|
||||||
FileOutputStream s = ManagedFileAccess.outStream(output);
|
FileOutputStream s = ManagedFileAccess.outStream(output);
|
||||||
|
@ -1073,8 +1072,7 @@ public class ValidationEngine implements IValidatorResourceFetcher, IValidationP
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
public byte[] fetchRaw(IResourceValidator validator, String source) throws IOException {
|
public byte[] fetchRaw(IResourceValidator validator, String source) throws IOException {
|
||||||
SimpleHTTPClient http = new SimpleHTTPClient();
|
HTTPResult res = ManagedWebAccess.get(source);
|
||||||
HTTPResult res = http.get(source);
|
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
return res.getContent();
|
return res.getContent();
|
||||||
}
|
}
|
||||||
|
|
|
@ -4,11 +4,11 @@ import java.io.File;
|
||||||
import java.io.IOException;
|
import java.io.IOException;
|
||||||
|
|
||||||
import org.hl7.fhir.exceptions.FHIRException;
|
import org.hl7.fhir.exceptions.FHIRException;
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient;
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
|
|
||||||
import org.hl7.fhir.utilities.TextFile;
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
||||||
|
import org.hl7.fhir.utilities.http.HTTPResult;
|
||||||
|
import org.hl7.fhir.utilities.http.ManagedWebAccess;
|
||||||
|
|
||||||
public class ProfileLoader {
|
public class ProfileLoader {
|
||||||
public static byte[] loadProfileSource(String src) throws FHIRException, IOException {
|
public static byte[] loadProfileSource(String src) throws FHIRException, IOException {
|
||||||
|
@ -25,8 +25,7 @@ public class ProfileLoader {
|
||||||
|
|
||||||
private static byte[] loadProfileFromUrl(String src) throws FHIRException {
|
private static byte[] loadProfileFromUrl(String src) throws FHIRException {
|
||||||
try {
|
try {
|
||||||
SimpleHTTPClient http = new SimpleHTTPClient();
|
HTTPResult res = ManagedWebAccess.get(src + "?nocache=" + System.currentTimeMillis());
|
||||||
HTTPResult res = http.get(src + "?nocache=" + System.currentTimeMillis());
|
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
return res.getContent();
|
return res.getContent();
|
||||||
} catch (Exception e) {
|
} catch (Exception e) {
|
||||||
|
|
|
@ -7,8 +7,8 @@ import java.util.Map;
|
||||||
|
|
||||||
import org.hl7.fhir.r5.elementmodel.Element;
|
import org.hl7.fhir.r5.elementmodel.Element;
|
||||||
import org.hl7.fhir.r5.elementmodel.JsonParser;
|
import org.hl7.fhir.r5.elementmodel.JsonParser;
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient;
|
import org.hl7.fhir.utilities.http.HTTPResult;
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
|
import org.hl7.fhir.utilities.http.ManagedWebAccess;
|
||||||
import org.hl7.fhir.utilities.validation.ValidationMessage;
|
import org.hl7.fhir.utilities.validation.ValidationMessage;
|
||||||
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueSeverity;
|
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueSeverity;
|
||||||
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
|
import org.hl7.fhir.utilities.validation.ValidationMessage.IssueType;
|
||||||
|
@ -160,8 +160,7 @@ public class IPAValidator {
|
||||||
|
|
||||||
private Element makeRequest(ValidationNode vn, String url) {
|
private Element makeRequest(ValidationNode vn, String url) {
|
||||||
try {
|
try {
|
||||||
SimpleHTTPClient http = new SimpleHTTPClient();
|
HTTPResult result = ManagedWebAccess.get(url, "application/fhir+json");
|
||||||
HTTPResult result = http.get(url, "application/fhir+json");
|
|
||||||
if (result.getCode() >= 300) {
|
if (result.getCode() >= 300) {
|
||||||
vn.getIssues().add(new ValidationMessage(Source.IPAValidator, IssueType.EXCEPTION, "http.request",
|
vn.getIssues().add(new ValidationMessage(Source.IPAValidator, IssueType.EXCEPTION, "http.request",
|
||||||
"HTTP Return code is "+result.getCode()+" "+result.getMessage(),
|
"HTTP Return code is "+result.getCode()+" "+result.getMessage(),
|
||||||
|
|
|
@ -70,12 +70,12 @@ import org.hl7.fhir.r5.utils.validation.constants.CodedContentValidationPolicy;
|
||||||
import org.hl7.fhir.r5.utils.validation.constants.ContainedReferenceValidationPolicy;
|
import org.hl7.fhir.r5.utils.validation.constants.ContainedReferenceValidationPolicy;
|
||||||
import org.hl7.fhir.r5.utils.validation.constants.ReferenceValidationPolicy;
|
import org.hl7.fhir.r5.utils.validation.constants.ReferenceValidationPolicy;
|
||||||
import org.hl7.fhir.utilities.FhirPublication;
|
import org.hl7.fhir.utilities.FhirPublication;
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient;
|
|
||||||
import org.hl7.fhir.utilities.SimpleHTTPClient.HTTPResult;
|
|
||||||
import org.hl7.fhir.utilities.TextFile;
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
import org.hl7.fhir.utilities.VersionUtilities;
|
import org.hl7.fhir.utilities.VersionUtilities;
|
||||||
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
||||||
|
import org.hl7.fhir.utilities.http.HTTPResult;
|
||||||
|
import org.hl7.fhir.utilities.http.ManagedWebAccess;
|
||||||
import org.hl7.fhir.utilities.json.JsonException;
|
import org.hl7.fhir.utilities.json.JsonException;
|
||||||
import org.hl7.fhir.utilities.json.JsonTrackingParser;
|
import org.hl7.fhir.utilities.json.JsonTrackingParser;
|
||||||
import org.hl7.fhir.utilities.json.JsonUtilities;
|
import org.hl7.fhir.utilities.json.JsonUtilities;
|
||||||
|
@ -828,8 +828,7 @@ public class ValidationTests implements IEvaluationContext, IValidatorResourceFe
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
public byte[] fetchRaw(IResourceValidator validator, String source) throws MalformedURLException, IOException {
|
public byte[] fetchRaw(IResourceValidator validator, String source) throws MalformedURLException, IOException {
|
||||||
SimpleHTTPClient http = new SimpleHTTPClient();
|
HTTPResult res = ManagedWebAccess.get(source);
|
||||||
HTTPResult res = http.get(source);
|
|
||||||
res.checkThrowException();
|
res.checkThrowException();
|
||||||
return res.getContent();
|
return res.getContent();
|
||||||
}
|
}
|
||||||
|
|
15
security.md
15
security.md
|
@ -21,8 +21,19 @@ restricting path access to particular directories.
|
||||||
# Network access
|
# Network access
|
||||||
|
|
||||||
The library will access the web to download needed collateral, or to access terminology resources or servers.
|
The library will access the web to download needed collateral, or to access terminology resources or servers.
|
||||||
All access is by http(s) using the Apache... library, and is controlled by the class XXXX where you can
|
All access is by http(s) using base java http library, and is controlled by the class ManagedWebAccess. You can
|
||||||
turn all network access off.
|
set the static features of this class to completely cut the library off from the
|
||||||
|
web, or provide your own web accessor, or limit the web resources accessed
|
||||||
|
to particular domains or sub-domains. See ManagedWebAccess for details.
|
||||||
|
|
||||||
|
Note that for legacy reasons, network access can also be prohibited using
|
||||||
|
FhirSettings.setProhibitNetworkAccess(), but this is deprecated.
|
||||||
|
|
||||||
|
Note that libraries that this library depends on may still access the network directly. Review
|
||||||
|
of the use of these libraries is ongoing.
|
||||||
|
|
||||||
|
Validator: The validator CLI accesses the web to download packages and make use of the
|
||||||
|
terminology server, which defaults to https://tx.fhir.org.
|
||||||
|
|
||||||
# Logging
|
# Logging
|
||||||
|
|
||||||
|
|
Loading…
Reference in New Issue