Header updates
This commit is contained in:
James Agnew
parent
0acb99744b
commit
e265477c6e
|
|
@ -1,80 +1,101 @@
|
||||||
package org.hl7.fhir.convertors.misc;
|
package org.hl7.fhir.convertors.misc;
|
||||||
|
|
||||||
import java.io.File;
|
/*-
|
||||||
import java.io.IOException;
|
* #%L
|
||||||
import java.util.ArrayList;
|
* org.hl7.fhir.convertors
|
||||||
import java.util.List;
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2019 Health Level 7
|
||||||
import org.hl7.fhir.utilities.TextFile;
|
* %%
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
import org.hl7.fhir.utilities.json.JsonTrackingParser;
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
import com.google.gson.Gson;
|
*
|
||||||
import com.google.gson.GsonBuilder;
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
import com.google.gson.JsonObject;
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
public class PackageMaintainer {
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
private static final String PATH = "C:\\work\\org.hl7.fhir\\packages\\core";
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
public static void main(String[] args) throws IOException {
|
*/
|
||||||
new PackageMaintainer().check("r4");
|
|
||||||
new PackageMaintainer().check("r2");
|
|
||||||
new PackageMaintainer().check("r3");
|
import java.io.File;
|
||||||
new PackageMaintainer().check("r2b");
|
import java.io.IOException;
|
||||||
}
|
import java.util.ArrayList;
|
||||||
|
import java.util.List;
|
||||||
private void check(String ver) throws IOException {
|
|
||||||
System.out.println("Check "+ver);
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
List<String> allIds = listResources(Utilities.path(PATH, "hl7.fhir."+ver+".examples", "package"));
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
List<String> coreIds = listResources(Utilities.path(PATH, "hl7.fhir."+ver+".core", "package"));
|
import org.hl7.fhir.utilities.json.JsonTrackingParser;
|
||||||
for (String s : coreIds) {
|
|
||||||
if (!allIds.contains(s)) {
|
import com.google.gson.Gson;
|
||||||
System.out.println("Core contains "+s+" but allIds doesn't");
|
import com.google.gson.GsonBuilder;
|
||||||
}
|
import com.google.gson.JsonObject;
|
||||||
}
|
|
||||||
for (String s : allIds) {
|
public class PackageMaintainer {
|
||||||
if (!coreIds.contains(s)) {
|
|
||||||
String c = s.substring(0, s.indexOf("-"));
|
|
||||||
if (Utilities.existsInList(c, "CodeSystem", "ValueSet", "ConceptMap", "StructureDefinition", "StructureMap", "NamingSystem", "SearchParameter", "OperationDefinition", "CapabilityStatement", "Conformance"))
|
private static final String PATH = "C:\\work\\org.hl7.fhir\\packages\\core";
|
||||||
System.out.println("Examples contains "+s+" but core doesn't");
|
|
||||||
}
|
public static void main(String[] args) throws IOException {
|
||||||
}
|
new PackageMaintainer().check("r4");
|
||||||
strip(new File(Utilities.path(PATH, "hl7.fhir."+ver+".core", "package")));
|
new PackageMaintainer().check("r2");
|
||||||
strip(new File(Utilities.path(PATH, "hl7.fhir."+ver+".expansions", "package")));
|
new PackageMaintainer().check("r3");
|
||||||
if (!ver.equals("r2b"))
|
new PackageMaintainer().check("r2b");
|
||||||
strip(new File(Utilities.path(PATH, "hl7.fhir."+ver+".elements", "package")));
|
}
|
||||||
}
|
|
||||||
|
private void check(String ver) throws IOException {
|
||||||
|
System.out.println("Check "+ver);
|
||||||
private List<String> listResources(String dir) {
|
List<String> allIds = listResources(Utilities.path(PATH, "hl7.fhir."+ver+".examples", "package"));
|
||||||
File folder = new File(dir);
|
List<String> coreIds = listResources(Utilities.path(PATH, "hl7.fhir."+ver+".core", "package"));
|
||||||
List<String> res = new ArrayList<>();
|
for (String s : coreIds) {
|
||||||
for (String fn : folder.list()) {
|
if (!allIds.contains(s)) {
|
||||||
if (fn.endsWith(".json") && fn.contains("-")) {
|
System.out.println("Core contains "+s+" but allIds doesn't");
|
||||||
String s = fn;
|
}
|
||||||
s = s.substring(0, s.indexOf("."));
|
}
|
||||||
res.add(s);
|
for (String s : allIds) {
|
||||||
}
|
if (!coreIds.contains(s)) {
|
||||||
}
|
String c = s.substring(0, s.indexOf("-"));
|
||||||
return res;
|
if (Utilities.existsInList(c, "CodeSystem", "ValueSet", "ConceptMap", "StructureDefinition", "StructureMap", "NamingSystem", "SearchParameter", "OperationDefinition", "CapabilityStatement", "Conformance"))
|
||||||
}
|
System.out.println("Examples contains "+s+" but core doesn't");
|
||||||
|
}
|
||||||
private void strip(File folder) throws IOException {
|
}
|
||||||
for (File f : folder.listFiles()) {
|
strip(new File(Utilities.path(PATH, "hl7.fhir."+ver+".core", "package")));
|
||||||
if (f.isDirectory())
|
strip(new File(Utilities.path(PATH, "hl7.fhir."+ver+".expansions", "package")));
|
||||||
strip(f);
|
if (!ver.equals("r2b"))
|
||||||
else if (f.getName().endsWith(".json")) {
|
strip(new File(Utilities.path(PATH, "hl7.fhir."+ver+".elements", "package")));
|
||||||
JsonObject json = JsonTrackingParser.parseJson(f);
|
}
|
||||||
if (json.has("resourceType") && json.has("text")) {
|
|
||||||
json.remove("text");
|
|
||||||
Gson gson = new GsonBuilder().create();
|
private List<String> listResources(String dir) {
|
||||||
String src = gson.toJson(json);
|
File folder = new File(dir);
|
||||||
TextFile.stringToFile(src, f.getAbsolutePath());
|
List<String> res = new ArrayList<>();
|
||||||
}
|
for (String fn : folder.list()) {
|
||||||
}
|
if (fn.endsWith(".json") && fn.contains("-")) {
|
||||||
}
|
String s = fn;
|
||||||
}
|
s = s.substring(0, s.indexOf("."));
|
||||||
|
res.add(s);
|
||||||
}
|
}
|
||||||
|
}
|
||||||
|
return res;
|
||||||
|
}
|
||||||
|
|
||||||
|
private void strip(File folder) throws IOException {
|
||||||
|
for (File f : folder.listFiles()) {
|
||||||
|
if (f.isDirectory())
|
||||||
|
strip(f);
|
||||||
|
else if (f.getName().endsWith(".json")) {
|
||||||
|
JsonObject json = JsonTrackingParser.parseJson(f);
|
||||||
|
if (json.has("resourceType") && json.has("text")) {
|
||||||
|
json.remove("text");
|
||||||
|
Gson gson = new GsonBuilder().create();
|
||||||
|
String src = gson.toJson(json);
|
||||||
|
TextFile.stringToFile(src, f.getAbsolutePath());
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
||||||
|
|
|
||||||
|
|
@ -1,297 +1,318 @@
|
||||||
package org.hl7.fhir.convertors.misc;
|
package org.hl7.fhir.convertors.misc;
|
||||||
|
|
||||||
import java.io.FileInputStream;
|
/*-
|
||||||
import java.io.FileNotFoundException;
|
* #%L
|
||||||
import java.io.FileOutputStream;
|
* org.hl7.fhir.convertors
|
||||||
import java.io.IOException;
|
* %%
|
||||||
import java.io.UnsupportedEncodingException;
|
* Copyright (C) 2014 - 2019 Health Level 7
|
||||||
import java.util.ArrayList;
|
* %%
|
||||||
import java.util.Collection;
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
import java.util.Collections;
|
* you may not use this file except in compliance with the License.
|
||||||
import java.util.Date;
|
* You may obtain a copy of the License at
|
||||||
import java.util.List;
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
import org.hl7.fhir.convertors.misc.SearchParameterProcessor.SPRelationship;
|
*
|
||||||
import org.hl7.fhir.exceptions.FHIRException;
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
import org.hl7.fhir.exceptions.FHIRFormatError;
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
import org.hl7.fhir.r5.formats.IParser.OutputStyle;
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
import org.hl7.fhir.r5.formats.JsonParser;
|
* See the License for the specific language governing permissions and
|
||||||
import org.hl7.fhir.r5.model.ConceptMap;
|
* limitations under the License.
|
||||||
import org.hl7.fhir.r5.model.ConceptMap.ConceptMapGroupComponent;
|
* #L%
|
||||||
import org.hl7.fhir.r5.model.ConceptMap.SourceElementComponent;
|
*/
|
||||||
import org.hl7.fhir.r5.model.Enumerations.ConceptMapEquivalence;
|
|
||||||
import org.hl7.fhir.r5.model.Enumerations.PublicationStatus;
|
|
||||||
import org.hl7.fhir.utilities.CSVReader;
|
import java.io.FileInputStream;
|
||||||
import org.hl7.fhir.utilities.TextFile;
|
import java.io.FileNotFoundException;
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
import java.io.FileOutputStream;
|
||||||
|
import java.io.IOException;
|
||||||
public class SearchParameterProcessor {
|
import java.io.UnsupportedEncodingException;
|
||||||
|
import java.util.ArrayList;
|
||||||
public class SPRelationship {
|
import java.util.Collection;
|
||||||
private String r4;
|
import java.util.Collections;
|
||||||
private String r3;
|
import java.util.Date;
|
||||||
private String r2b;
|
import java.util.List;
|
||||||
private String r2;
|
|
||||||
public SPRelationship(String r4, String r3, String r2b, String r2) {
|
import org.hl7.fhir.convertors.misc.SearchParameterProcessor.SPRelationship;
|
||||||
super();
|
import org.hl7.fhir.exceptions.FHIRException;
|
||||||
this.r4 = r4;
|
import org.hl7.fhir.exceptions.FHIRFormatError;
|
||||||
this.r3 = r3;
|
import org.hl7.fhir.r5.formats.IParser.OutputStyle;
|
||||||
this.r2b = r2b;
|
import org.hl7.fhir.r5.formats.JsonParser;
|
||||||
this.r2 = r2;
|
import org.hl7.fhir.r5.model.ConceptMap;
|
||||||
}
|
import org.hl7.fhir.r5.model.ConceptMap.ConceptMapGroupComponent;
|
||||||
public String getR4() {
|
import org.hl7.fhir.r5.model.ConceptMap.SourceElementComponent;
|
||||||
return r4;
|
import org.hl7.fhir.r5.model.Enumerations.ConceptMapEquivalence;
|
||||||
}
|
import org.hl7.fhir.r5.model.Enumerations.PublicationStatus;
|
||||||
public String getR3() {
|
import org.hl7.fhir.utilities.CSVReader;
|
||||||
return r3;
|
import org.hl7.fhir.utilities.TextFile;
|
||||||
}
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
public String getR2b() {
|
|
||||||
return r2b;
|
public class SearchParameterProcessor {
|
||||||
}
|
|
||||||
public String getR2() {
|
public class SPRelationship {
|
||||||
return r2;
|
private String r4;
|
||||||
}
|
private String r3;
|
||||||
public String getByCode(String code) {
|
private String r2b;
|
||||||
if ("R4".equals(code))
|
private String r2;
|
||||||
return r4;
|
public SPRelationship(String r4, String r3, String r2b, String r2) {
|
||||||
if ("R3".equals(code))
|
super();
|
||||||
return r3;
|
this.r4 = r4;
|
||||||
if ("R2b".equals(code))
|
this.r3 = r3;
|
||||||
return r2b;
|
this.r2b = r2b;
|
||||||
if ("R2".equals(code))
|
this.r2 = r2;
|
||||||
return r2;
|
}
|
||||||
return null;
|
public String getR4() {
|
||||||
}
|
return r4;
|
||||||
|
}
|
||||||
}
|
public String getR3() {
|
||||||
|
return r3;
|
||||||
private static final String ROOT = "C:\\work\\org.hl7.fhir\\org.fhir.interversion\\package";
|
}
|
||||||
|
public String getR2b() {
|
||||||
private List<SPRelationship> list = new ArrayList<>();
|
return r2b;
|
||||||
|
}
|
||||||
private List<String> list4 = new ArrayList<>();
|
public String getR2() {
|
||||||
private List<String> list3 = new ArrayList<>();
|
return r2;
|
||||||
private List<String> list2 = new ArrayList<>();
|
}
|
||||||
private List<String> list2b = new ArrayList<>();
|
public String getByCode(String code) {
|
||||||
|
if ("R4".equals(code))
|
||||||
private void load() throws FileNotFoundException, IOException, FHIRException {
|
return r4;
|
||||||
load4();
|
if ("R3".equals(code))
|
||||||
load3();
|
return r3;
|
||||||
load2b();
|
if ("R2b".equals(code))
|
||||||
load2();
|
return r2b;
|
||||||
loadCsv();
|
if ("R2".equals(code))
|
||||||
|
return r2;
|
||||||
check4();
|
return null;
|
||||||
check3();
|
}
|
||||||
check2b();
|
|
||||||
check2();
|
}
|
||||||
|
|
||||||
generate("R3", "R4", "STU3", "R4");
|
private static final String ROOT = "C:\\work\\org.hl7.fhir\\org.fhir.interversion\\package";
|
||||||
generate("R4", "R3", "R4", "STU3");
|
|
||||||
generate("R2", "R4", "DSTU2", "R4");
|
private List<SPRelationship> list = new ArrayList<>();
|
||||||
generate("R4", "R2", "R4", "DSTU2");
|
|
||||||
generate("R2", "R3", "DSTU2", "STU3");
|
private List<String> list4 = new ArrayList<>();
|
||||||
generate("R3", "R2", "STU3", "DSTU2");
|
private List<String> list3 = new ArrayList<>();
|
||||||
}
|
private List<String> list2 = new ArrayList<>();
|
||||||
|
private List<String> list2b = new ArrayList<>();
|
||||||
private void generate(String src, String dst, String srcURL, String tgtURL) throws FileNotFoundException, IOException {
|
|
||||||
ConceptMap map = new ConceptMap();
|
private void load() throws FileNotFoundException, IOException, FHIRException {
|
||||||
map.setId("search-parameters-"+src+"-to-"+dst);
|
load4();
|
||||||
map.setUrl("http://hl7.org/fhir/interversion/ConceptMap/"+map.getId());
|
load3();
|
||||||
map.setName("SearchParameterMap"+src+dst);
|
load2b();
|
||||||
map.setTitle("Search Parameter Map - "+src+" to "+dst);
|
load2();
|
||||||
map.setStatus(PublicationStatus.DRAFT);
|
loadCsv();
|
||||||
map.setDate(new Date());
|
|
||||||
map.setExperimental(false);
|
check4();
|
||||||
map.setPublisher("HL7");
|
check3();
|
||||||
ConceptMapGroupComponent group = map.addGroup();
|
check2b();
|
||||||
group.setSource("http://hl7.org/fhir/"+srcURL);
|
check2();
|
||||||
group.setTarget("http://hl7.org/fhir/"+tgtURL);
|
|
||||||
for (SPRelationship sp : list) {
|
generate("R3", "R4", "STU3", "R4");
|
||||||
String s = sp.getByCode(src);
|
generate("R4", "R3", "R4", "STU3");
|
||||||
String d = sp.getByCode(dst);
|
generate("R2", "R4", "DSTU2", "R4");
|
||||||
if (!Utilities.noString(s) && !Utilities.noString(d)) {
|
generate("R4", "R2", "R4", "DSTU2");
|
||||||
SourceElementComponent e = makeElement(s, group);
|
generate("R2", "R3", "DSTU2", "STU3");
|
||||||
e.addTarget().setCode(d).setEquivalence(ConceptMapEquivalence.RELATEDTO);
|
generate("R3", "R2", "STU3", "DSTU2");
|
||||||
}
|
}
|
||||||
}
|
|
||||||
new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(ROOT, "ConceptMap-"+map.getId()+".json")), map);
|
private void generate(String src, String dst, String srcURL, String tgtURL) throws FileNotFoundException, IOException {
|
||||||
}
|
ConceptMap map = new ConceptMap();
|
||||||
|
map.setId("search-parameters-"+src+"-to-"+dst);
|
||||||
private SourceElementComponent makeElement(String code, ConceptMapGroupComponent group) {
|
map.setUrl("http://hl7.org/fhir/interversion/ConceptMap/"+map.getId());
|
||||||
for (SourceElementComponent e : group.getElement()) {
|
map.setName("SearchParameterMap"+src+dst);
|
||||||
if (e.getCode().equals(code))
|
map.setTitle("Search Parameter Map - "+src+" to "+dst);
|
||||||
return e;
|
map.setStatus(PublicationStatus.DRAFT);
|
||||||
}
|
map.setDate(new Date());
|
||||||
return group.addElement().setCode(code);
|
map.setExperimental(false);
|
||||||
}
|
map.setPublisher("HL7");
|
||||||
|
ConceptMapGroupComponent group = map.addGroup();
|
||||||
private void check4() {
|
group.setSource("http://hl7.org/fhir/"+srcURL);
|
||||||
for (String s : list4) {
|
group.setTarget("http://hl7.org/fhir/"+tgtURL);
|
||||||
boolean ok = false;
|
for (SPRelationship sp : list) {
|
||||||
for (SPRelationship t : list) {
|
String s = sp.getByCode(src);
|
||||||
if (s.equals(t.r4))
|
String d = sp.getByCode(dst);
|
||||||
ok = true;
|
if (!Utilities.noString(s) && !Utilities.noString(d)) {
|
||||||
}
|
SourceElementComponent e = makeElement(s, group);
|
||||||
if (!ok)
|
e.addTarget().setCode(d).setEquivalence(ConceptMapEquivalence.RELATEDTO);
|
||||||
System.out.println("R4 missing : "+s);
|
}
|
||||||
}
|
}
|
||||||
for (SPRelationship sp : list) {
|
new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(ROOT, "ConceptMap-"+map.getId()+".json")), map);
|
||||||
if (!Utilities.noString(sp.r4)) {
|
}
|
||||||
boolean ok = list4.contains(sp.r4);
|
|
||||||
if (!ok)
|
private SourceElementComponent makeElement(String code, ConceptMapGroupComponent group) {
|
||||||
System.out.println("R4 extra : "+sp.r4);
|
for (SourceElementComponent e : group.getElement()) {
|
||||||
}
|
if (e.getCode().equals(code))
|
||||||
}
|
return e;
|
||||||
}
|
}
|
||||||
|
return group.addElement().setCode(code);
|
||||||
private void check3() {
|
}
|
||||||
for (String s : list3) {
|
|
||||||
boolean ok = false;
|
private void check4() {
|
||||||
for (SPRelationship t : list) {
|
for (String s : list4) {
|
||||||
if (s.equals(t.r3))
|
boolean ok = false;
|
||||||
ok = true;
|
for (SPRelationship t : list) {
|
||||||
}
|
if (s.equals(t.r4))
|
||||||
if (!ok)
|
ok = true;
|
||||||
System.out.println("R3 : "+s);
|
}
|
||||||
}
|
if (!ok)
|
||||||
for (SPRelationship sp : list) {
|
System.out.println("R4 missing : "+s);
|
||||||
if (!Utilities.noString(sp.r3)) {
|
}
|
||||||
boolean ok = list3.contains(sp.r3);
|
for (SPRelationship sp : list) {
|
||||||
if (!ok)
|
if (!Utilities.noString(sp.r4)) {
|
||||||
System.out.println("R3 extra : "+sp.r3);
|
boolean ok = list4.contains(sp.r4);
|
||||||
}
|
if (!ok)
|
||||||
}
|
System.out.println("R4 extra : "+sp.r4);
|
||||||
}
|
}
|
||||||
|
}
|
||||||
private void check2b() {
|
}
|
||||||
for (String s : list2b) {
|
|
||||||
boolean ok = false;
|
private void check3() {
|
||||||
for (SPRelationship t : list) {
|
for (String s : list3) {
|
||||||
if (s.equals(t.r2b))
|
boolean ok = false;
|
||||||
ok = true;
|
for (SPRelationship t : list) {
|
||||||
}
|
if (s.equals(t.r3))
|
||||||
if (!ok)
|
ok = true;
|
||||||
System.out.println("R2b : "+s);
|
}
|
||||||
}
|
if (!ok)
|
||||||
for (SPRelationship sp : list) {
|
System.out.println("R3 : "+s);
|
||||||
if (!Utilities.noString(sp.r2b)) {
|
}
|
||||||
boolean ok = list2b.contains(sp.r2b);
|
for (SPRelationship sp : list) {
|
||||||
if (!ok)
|
if (!Utilities.noString(sp.r3)) {
|
||||||
System.out.println("R2b extra : "+sp.r2b);
|
boolean ok = list3.contains(sp.r3);
|
||||||
}
|
if (!ok)
|
||||||
}
|
System.out.println("R3 extra : "+sp.r3);
|
||||||
}
|
}
|
||||||
|
}
|
||||||
private void check2() {
|
}
|
||||||
for (String s : list2) {
|
|
||||||
boolean ok = false;
|
private void check2b() {
|
||||||
for (SPRelationship t : list) {
|
for (String s : list2b) {
|
||||||
if (s.equals(t.r2))
|
boolean ok = false;
|
||||||
ok = true;
|
for (SPRelationship t : list) {
|
||||||
}
|
if (s.equals(t.r2b))
|
||||||
if (!ok)
|
ok = true;
|
||||||
System.out.println("R2 : "+s);
|
}
|
||||||
}
|
if (!ok)
|
||||||
for (SPRelationship sp : list) {
|
System.out.println("R2b : "+s);
|
||||||
if (!Utilities.noString(sp.r2)) {
|
}
|
||||||
boolean ok = list2.contains(sp.r2);
|
for (SPRelationship sp : list) {
|
||||||
if (!ok)
|
if (!Utilities.noString(sp.r2b)) {
|
||||||
System.out.println("R2 extra : "+sp.r2);
|
boolean ok = list2b.contains(sp.r2b);
|
||||||
}
|
if (!ok)
|
||||||
}
|
System.out.println("R2b extra : "+sp.r2b);
|
||||||
}
|
}
|
||||||
|
}
|
||||||
private void load4() throws FHIRFormatError, FileNotFoundException, IOException {
|
}
|
||||||
org.hl7.fhir.r4.model.Bundle bundle = (org.hl7.fhir.r4.model.Bundle) new org.hl7.fhir.r4.formats.JsonParser().parse(new FileInputStream("c:\\temp\\sp4.json"));
|
|
||||||
for (org.hl7.fhir.r4.model.Bundle.BundleEntryComponent be : bundle.getEntry()) {
|
private void check2() {
|
||||||
org.hl7.fhir.r4.model.SearchParameter sp = (org.hl7.fhir.r4.model.SearchParameter) be.getResource();
|
for (String s : list2) {
|
||||||
for (org.hl7.fhir.r4.model.CodeType br : sp.getBase()) {
|
boolean ok = false;
|
||||||
if (!Utilities.existsInList(br.asStringValue(), "DomainResource", "Resource"))
|
for (SPRelationship t : list) {
|
||||||
list4.add(br.asStringValue()+"."+sp.getCode());//+", "+sp.getType().toCode());
|
if (s.equals(t.r2))
|
||||||
}
|
ok = true;
|
||||||
}
|
}
|
||||||
Collections.sort(list4);
|
if (!ok)
|
||||||
System.out.println("R4 loaded - "+list4.size()+" parameters");
|
System.out.println("R2 : "+s);
|
||||||
}
|
}
|
||||||
|
for (SPRelationship sp : list) {
|
||||||
private void load3() throws FHIRFormatError, FileNotFoundException, IOException {
|
if (!Utilities.noString(sp.r2)) {
|
||||||
org.hl7.fhir.dstu3.model.Bundle bundle = (org.hl7.fhir.dstu3.model.Bundle) new org.hl7.fhir.dstu3.formats.JsonParser().parse(new FileInputStream("c:\\temp\\sp3.json"));
|
boolean ok = list2.contains(sp.r2);
|
||||||
for (org.hl7.fhir.dstu3.model.Bundle.BundleEntryComponent be : bundle.getEntry()) {
|
if (!ok)
|
||||||
org.hl7.fhir.dstu3.model.SearchParameter sp = (org.hl7.fhir.dstu3.model.SearchParameter) be.getResource();
|
System.out.println("R2 extra : "+sp.r2);
|
||||||
for (org.hl7.fhir.dstu3.model.CodeType br : sp.getBase()) {
|
}
|
||||||
if (!Utilities.existsInList(br.asStringValue(), "DomainResource", "Resource"))
|
}
|
||||||
list3.add(br.asStringValue()+"."+sp.getCode());//+", "+sp.getType().toCode());
|
}
|
||||||
}
|
|
||||||
}
|
private void load4() throws FHIRFormatError, FileNotFoundException, IOException {
|
||||||
Collections.sort(list3);
|
org.hl7.fhir.r4.model.Bundle bundle = (org.hl7.fhir.r4.model.Bundle) new org.hl7.fhir.r4.formats.JsonParser().parse(new FileInputStream("c:\\temp\\sp4.json"));
|
||||||
System.out.println("R3 loaded - "+list3.size()+" parameters");
|
for (org.hl7.fhir.r4.model.Bundle.BundleEntryComponent be : bundle.getEntry()) {
|
||||||
}
|
org.hl7.fhir.r4.model.SearchParameter sp = (org.hl7.fhir.r4.model.SearchParameter) be.getResource();
|
||||||
|
for (org.hl7.fhir.r4.model.CodeType br : sp.getBase()) {
|
||||||
private void load2() throws FHIRFormatError, FileNotFoundException, IOException {
|
if (!Utilities.existsInList(br.asStringValue(), "DomainResource", "Resource"))
|
||||||
org.hl7.fhir.dstu2.model.Bundle bundle = (org.hl7.fhir.dstu2.model.Bundle) new org.hl7.fhir.dstu2.formats.JsonParser().parse(new FileInputStream("c:\\temp\\sp2.json"));
|
list4.add(br.asStringValue()+"."+sp.getCode());//+", "+sp.getType().toCode());
|
||||||
for (org.hl7.fhir.dstu2.model.Bundle.BundleEntryComponent be : bundle.getEntry()) {
|
}
|
||||||
org.hl7.fhir.dstu2.model.SearchParameter sp = (org.hl7.fhir.dstu2.model.SearchParameter) be.getResource();
|
}
|
||||||
String br = sp.getBase();
|
Collections.sort(list4);
|
||||||
if (!Utilities.existsInList(br, "DomainResource", "Resource"))
|
System.out.println("R4 loaded - "+list4.size()+" parameters");
|
||||||
list2.add(br+"."+sp.getCode());//+", "+sp.getType().toCode());
|
}
|
||||||
}
|
|
||||||
Collections.sort(list2);
|
private void load3() throws FHIRFormatError, FileNotFoundException, IOException {
|
||||||
System.out.println("R2 loaded - "+list2.size()+" parameters");
|
org.hl7.fhir.dstu3.model.Bundle bundle = (org.hl7.fhir.dstu3.model.Bundle) new org.hl7.fhir.dstu3.formats.JsonParser().parse(new FileInputStream("c:\\temp\\sp3.json"));
|
||||||
}
|
for (org.hl7.fhir.dstu3.model.Bundle.BundleEntryComponent be : bundle.getEntry()) {
|
||||||
|
org.hl7.fhir.dstu3.model.SearchParameter sp = (org.hl7.fhir.dstu3.model.SearchParameter) be.getResource();
|
||||||
private void load2b() throws FHIRFormatError, FileNotFoundException, IOException {
|
for (org.hl7.fhir.dstu3.model.CodeType br : sp.getBase()) {
|
||||||
org.hl7.fhir.dstu2016may.model.Bundle bundle = (org.hl7.fhir.dstu2016may.model.Bundle) new org.hl7.fhir.dstu2016may.formats.JsonParser().parse(new FileInputStream("c:\\temp\\sp2b.json"));
|
if (!Utilities.existsInList(br.asStringValue(), "DomainResource", "Resource"))
|
||||||
for (org.hl7.fhir.dstu2016may.model.Bundle.BundleEntryComponent be : bundle.getEntry()) {
|
list3.add(br.asStringValue()+"."+sp.getCode());//+", "+sp.getType().toCode());
|
||||||
org.hl7.fhir.dstu2016may.model.SearchParameter sp = (org.hl7.fhir.dstu2016may.model.SearchParameter) be.getResource();
|
}
|
||||||
String br = sp.getBase();
|
}
|
||||||
if (!Utilities.existsInList(br, "DomainResource", "Resource"))
|
Collections.sort(list3);
|
||||||
list2b.add(br+"."+sp.getCode());//+", "+sp.getType().toCode());
|
System.out.println("R3 loaded - "+list3.size()+" parameters");
|
||||||
}
|
}
|
||||||
Collections.sort(list2b);
|
|
||||||
System.out.println("R2b loaded - "+list2b.size()+" parameters");
|
private void load2() throws FHIRFormatError, FileNotFoundException, IOException {
|
||||||
}
|
org.hl7.fhir.dstu2.model.Bundle bundle = (org.hl7.fhir.dstu2.model.Bundle) new org.hl7.fhir.dstu2.formats.JsonParser().parse(new FileInputStream("c:\\temp\\sp2.json"));
|
||||||
|
for (org.hl7.fhir.dstu2.model.Bundle.BundleEntryComponent be : bundle.getEntry()) {
|
||||||
private void loadCsv() throws IOException, FHIRException {
|
org.hl7.fhir.dstu2.model.SearchParameter sp = (org.hl7.fhir.dstu2.model.SearchParameter) be.getResource();
|
||||||
CSVReader csv = new CSVReader(new FileInputStream("C:\\work\\org.hl7.fhir\\org.fhir.interversion\\work\\search-params.csv"));
|
String br = sp.getBase();
|
||||||
csv.readHeaders();
|
if (!Utilities.existsInList(br, "DomainResource", "Resource"))
|
||||||
while (csv.line()) {
|
list2.add(br+"."+sp.getCode());//+", "+sp.getType().toCode());
|
||||||
String r4 = csv.cell("R4");
|
}
|
||||||
String r3 = csv.cell("R3");
|
Collections.sort(list2);
|
||||||
String r2b = csv.cell("R2b");
|
System.out.println("R2 loaded - "+list2.size()+" parameters");
|
||||||
String r2 = csv.cell("R2");
|
}
|
||||||
if (!Utilities.noString(r4) || !Utilities.noString(r3) || !Utilities.noString(r2b) || !Utilities.noString(r2)) {
|
|
||||||
boolean ok = (!Utilities.noString(r4) && r4.contains(".")) ||
|
private void load2b() throws FHIRFormatError, FileNotFoundException, IOException {
|
||||||
(!Utilities.noString(r3) && r3.contains(".")) ||
|
org.hl7.fhir.dstu2016may.model.Bundle bundle = (org.hl7.fhir.dstu2016may.model.Bundle) new org.hl7.fhir.dstu2016may.formats.JsonParser().parse(new FileInputStream("c:\\temp\\sp2b.json"));
|
||||||
(!Utilities.noString(r2b) && r2b.contains(".")) ||
|
for (org.hl7.fhir.dstu2016may.model.Bundle.BundleEntryComponent be : bundle.getEntry()) {
|
||||||
(!Utilities.noString(r2) && r2.contains("."));
|
org.hl7.fhir.dstu2016may.model.SearchParameter sp = (org.hl7.fhir.dstu2016may.model.SearchParameter) be.getResource();
|
||||||
if (ok) {
|
String br = sp.getBase();
|
||||||
list.add(new SPRelationship(r4, r3, r2b, r2));
|
if (!Utilities.existsInList(br, "DomainResource", "Resource"))
|
||||||
}
|
list2b.add(br+"."+sp.getCode());//+", "+sp.getType().toCode());
|
||||||
}
|
}
|
||||||
}
|
Collections.sort(list2b);
|
||||||
System.out.println("Map loaded - "+list.size()+" entries");
|
System.out.println("R2b loaded - "+list2b.size()+" parameters");
|
||||||
}
|
}
|
||||||
|
|
||||||
// private void generate(String name) throws IOException {
|
private void loadCsv() throws IOException, FHIRException {
|
||||||
// StringBuilder b = new StringBuilder();
|
CSVReader csv = new CSVReader(new FileInputStream("C:\\work\\org.hl7.fhir\\org.fhir.interversion\\work\\search-params.csv"));
|
||||||
//
|
csv.readHeaders();
|
||||||
// String rn = "";
|
while (csv.line()) {
|
||||||
// Collections.sort(list);
|
String r4 = csv.cell("R4");
|
||||||
// for (String s : list) {
|
String r3 = csv.cell("R3");
|
||||||
// String rnn = s.substring(0, s.indexOf("."));
|
String r2b = csv.cell("R2b");
|
||||||
// if (!rnn.equals(rn)) {
|
String r2 = csv.cell("R2");
|
||||||
// rn = rnn;
|
if (!Utilities.noString(r4) || !Utilities.noString(r3) || !Utilities.noString(r2b) || !Utilities.noString(r2)) {
|
||||||
// b.append(rn+"\r\n");
|
boolean ok = (!Utilities.noString(r4) && r4.contains(".")) ||
|
||||||
// }
|
(!Utilities.noString(r3) && r3.contains(".")) ||
|
||||||
// b.append(s+"\r\n");
|
(!Utilities.noString(r2b) && r2b.contains(".")) ||
|
||||||
// }
|
(!Utilities.noString(r2) && r2.contains("."));
|
||||||
// TextFile.stringToFile(b.toString(), name);
|
if (ok) {
|
||||||
// }
|
list.add(new SPRelationship(r4, r3, r2b, r2));
|
||||||
//
|
}
|
||||||
public static void main(String[] args) throws FileNotFoundException, IOException, FHIRException {
|
}
|
||||||
new SearchParameterProcessor().load();
|
}
|
||||||
}
|
System.out.println("Map loaded - "+list.size()+" entries");
|
||||||
|
}
|
||||||
|
|
||||||
}
|
// private void generate(String name) throws IOException {
|
||||||
|
// StringBuilder b = new StringBuilder();
|
||||||
|
//
|
||||||
|
// String rn = "";
|
||||||
|
// Collections.sort(list);
|
||||||
|
// for (String s : list) {
|
||||||
|
// String rnn = s.substring(0, s.indexOf("."));
|
||||||
|
// if (!rnn.equals(rn)) {
|
||||||
|
// rn = rnn;
|
||||||
|
// b.append(rn+"\r\n");
|
||||||
|
// }
|
||||||
|
// b.append(s+"\r\n");
|
||||||
|
// }
|
||||||
|
// TextFile.stringToFile(b.toString(), name);
|
||||||
|
// }
|
||||||
|
//
|
||||||
|
public static void main(String[] args) throws FileNotFoundException, IOException, FHIRException {
|
||||||
|
new SearchParameterProcessor().load();
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
}
|
||||||
|
|
|
||||||
|
|
@ -1,45 +1,66 @@
|
||||||
package org.hl7.fhir.dstu2.utils;
|
package org.hl7.fhir.dstu2.utils;
|
||||||
|
|
||||||
import java.io.FileInputStream;
|
/*-
|
||||||
import java.io.FileNotFoundException;
|
* #%L
|
||||||
import java.io.FileOutputStream;
|
* org.hl7.fhir.dstu2
|
||||||
import java.io.IOException;
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2019 Health Level 7
|
||||||
import org.hl7.fhir.exceptions.FHIRFormatError;
|
* %%
|
||||||
import org.apache.commons.lang3.StringUtils;
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
import org.hl7.fhir.dstu2.formats.JsonParser;
|
* you may not use this file except in compliance with the License.
|
||||||
import org.hl7.fhir.dstu2.model.Bundle;
|
* You may obtain a copy of the License at
|
||||||
import org.hl7.fhir.dstu2.model.Bundle.BundleEntryComponent;
|
*
|
||||||
import org.hl7.fhir.dstu2.model.Resource;
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
import org.hl7.fhir.dstu2.model.ValueSet;
|
*
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
public class Unbundler {
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
public static void main(String[] args) throws Exception {
|
* limitations under the License.
|
||||||
unbundle(args[0]);
|
* #L%
|
||||||
}
|
*/
|
||||||
|
|
||||||
private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
|
|
||||||
String folder = Utilities.getDirectoryForFile(src);
|
import java.io.FileInputStream;
|
||||||
Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
|
import java.io.FileNotFoundException;
|
||||||
for (BundleEntryComponent be : bnd.getEntry()) {
|
import java.io.FileOutputStream;
|
||||||
Resource r = be.getResource();
|
import java.io.IOException;
|
||||||
if (r != null) {
|
|
||||||
if (StringUtils.isBlank(r.getId())) {
|
import org.hl7.fhir.exceptions.FHIRFormatError;
|
||||||
if (r instanceof ValueSet)
|
import org.apache.commons.lang3.StringUtils;
|
||||||
r.setId(tail((ValueSet) r));
|
import org.hl7.fhir.dstu2.formats.JsonParser;
|
||||||
}
|
import org.hl7.fhir.dstu2.model.Bundle;
|
||||||
if (!StringUtils.isBlank(r.getId())) {
|
import org.hl7.fhir.dstu2.model.Bundle.BundleEntryComponent;
|
||||||
String tgt = Utilities.path(folder, r.fhirType()+"-"+r.getId()+".json");
|
import org.hl7.fhir.dstu2.model.Resource;
|
||||||
new JsonParser().compose(new FileOutputStream(tgt), r);
|
import org.hl7.fhir.dstu2.model.ValueSet;
|
||||||
}
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
}
|
|
||||||
}
|
public class Unbundler {
|
||||||
}
|
|
||||||
|
public static void main(String[] args) throws Exception {
|
||||||
private static String tail(ValueSet r) {
|
unbundle(args[0]);
|
||||||
return r.getUrl().contains("/") ? r.getUrl().substring(r.getUrl().lastIndexOf("/")+1) : null;
|
}
|
||||||
}
|
|
||||||
|
private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
|
||||||
}
|
String folder = Utilities.getDirectoryForFile(src);
|
||||||
|
Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
|
||||||
|
for (BundleEntryComponent be : bnd.getEntry()) {
|
||||||
|
Resource r = be.getResource();
|
||||||
|
if (r != null) {
|
||||||
|
if (StringUtils.isBlank(r.getId())) {
|
||||||
|
if (r instanceof ValueSet)
|
||||||
|
r.setId(tail((ValueSet) r));
|
||||||
|
}
|
||||||
|
if (!StringUtils.isBlank(r.getId())) {
|
||||||
|
String tgt = Utilities.path(folder, r.fhirType()+"-"+r.getId()+".json");
|
||||||
|
new JsonParser().compose(new FileOutputStream(tgt), r);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
private static String tail(ValueSet r) {
|
||||||
|
return r.getUrl().contains("/") ? r.getUrl().substring(r.getUrl().lastIndexOf("/")+1) : null;
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
||||||
|
|
|
||||||
|
|
@ -1,45 +1,66 @@
|
||||||
package org.hl7.fhir.dstu2016may.utils;
|
package org.hl7.fhir.dstu2016may.utils;
|
||||||
|
|
||||||
import java.io.FileInputStream;
|
/*-
|
||||||
import java.io.FileNotFoundException;
|
* #%L
|
||||||
import java.io.FileOutputStream;
|
* org.hl7.fhir.dstu2016may
|
||||||
import java.io.IOException;
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2019 Health Level 7
|
||||||
import org.hl7.fhir.exceptions.FHIRFormatError;
|
* %%
|
||||||
import org.apache.commons.lang3.StringUtils;
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
import org.hl7.fhir.dstu2016may.model.ValueSet;
|
* you may not use this file except in compliance with the License.
|
||||||
import org.hl7.fhir.dstu2016may.formats.JsonParser;
|
* You may obtain a copy of the License at
|
||||||
import org.hl7.fhir.dstu2016may.model.Bundle;
|
*
|
||||||
import org.hl7.fhir.dstu2016may.model.Bundle.BundleEntryComponent;
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
import org.hl7.fhir.dstu2016may.model.Resource;
|
*
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
public class Unbundler {
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
public static void main(String[] args) throws Exception {
|
* limitations under the License.
|
||||||
unbundle(args[0]);
|
* #L%
|
||||||
}
|
*/
|
||||||
|
|
||||||
private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
|
|
||||||
String folder = Utilities.getDirectoryForFile(src);
|
import java.io.FileInputStream;
|
||||||
Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
|
import java.io.FileNotFoundException;
|
||||||
for (BundleEntryComponent be : bnd.getEntry()) {
|
import java.io.FileOutputStream;
|
||||||
Resource r = be.getResource();
|
import java.io.IOException;
|
||||||
if (r != null) {
|
|
||||||
if (StringUtils.isBlank(r.getId())) {
|
import org.hl7.fhir.exceptions.FHIRFormatError;
|
||||||
if (r instanceof ValueSet)
|
import org.apache.commons.lang3.StringUtils;
|
||||||
r.setId(tail((ValueSet) r));
|
import org.hl7.fhir.dstu2016may.model.ValueSet;
|
||||||
}
|
import org.hl7.fhir.dstu2016may.formats.JsonParser;
|
||||||
if (!StringUtils.isBlank(r.getId())) {
|
import org.hl7.fhir.dstu2016may.model.Bundle;
|
||||||
String tgt = Utilities.path(folder, r.fhirType()+"-"+r.getId()+".json");
|
import org.hl7.fhir.dstu2016may.model.Bundle.BundleEntryComponent;
|
||||||
new JsonParser().compose(new FileOutputStream(tgt), r);
|
import org.hl7.fhir.dstu2016may.model.Resource;
|
||||||
}
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
}
|
|
||||||
}
|
public class Unbundler {
|
||||||
}
|
|
||||||
|
public static void main(String[] args) throws Exception {
|
||||||
private static String tail(ValueSet r) {
|
unbundle(args[0]);
|
||||||
return r.getUrl().contains("/") ? r.getUrl().substring(r.getUrl().lastIndexOf("/")+1) : null;
|
}
|
||||||
}
|
|
||||||
|
private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
|
||||||
}
|
String folder = Utilities.getDirectoryForFile(src);
|
||||||
|
Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
|
||||||
|
for (BundleEntryComponent be : bnd.getEntry()) {
|
||||||
|
Resource r = be.getResource();
|
||||||
|
if (r != null) {
|
||||||
|
if (StringUtils.isBlank(r.getId())) {
|
||||||
|
if (r instanceof ValueSet)
|
||||||
|
r.setId(tail((ValueSet) r));
|
||||||
|
}
|
||||||
|
if (!StringUtils.isBlank(r.getId())) {
|
||||||
|
String tgt = Utilities.path(folder, r.fhirType()+"-"+r.getId()+".json");
|
||||||
|
new JsonParser().compose(new FileOutputStream(tgt), r);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
private static String tail(ValueSet r) {
|
||||||
|
return r.getUrl().contains("/") ? r.getUrl().substring(r.getUrl().lastIndexOf("/")+1) : null;
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
||||||
|
|
|
||||||
|
|
@ -1,33 +1,54 @@
|
||||||
package org.hl7.fhir.dstu3.utils;
|
package org.hl7.fhir.dstu3.utils;
|
||||||
|
|
||||||
import java.io.FileInputStream;
|
/*-
|
||||||
import java.io.FileNotFoundException;
|
* #%L
|
||||||
import java.io.FileOutputStream;
|
* org.hl7.fhir.dstu3
|
||||||
import java.io.IOException;
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2019 Health Level 7
|
||||||
import org.hl7.fhir.exceptions.FHIRFormatError;
|
* %%
|
||||||
import org.hl7.fhir.dstu3.formats.JsonParser;
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
import org.hl7.fhir.dstu3.model.Bundle;
|
* you may not use this file except in compliance with the License.
|
||||||
import org.hl7.fhir.dstu3.model.Bundle.BundleEntryComponent;
|
* You may obtain a copy of the License at
|
||||||
import org.hl7.fhir.dstu3.model.Resource;
|
*
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
public class Unbundler {
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
public static void main(String[] args) throws Exception {
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
unbundle(args[0]);
|
* See the License for the specific language governing permissions and
|
||||||
}
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
|
*/
|
||||||
String folder = Utilities.getDirectoryForFile(src);
|
|
||||||
Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
|
|
||||||
for (BundleEntryComponent be : bnd.getEntry()) {
|
import java.io.FileInputStream;
|
||||||
Resource r = be.getResource();
|
import java.io.FileNotFoundException;
|
||||||
if (r != null) {
|
import java.io.FileOutputStream;
|
||||||
String tgt = Utilities.path(folder, r.fhirType()+"-"+r.getId()+".json");
|
import java.io.IOException;
|
||||||
new JsonParser().compose(new FileOutputStream(tgt), r);
|
|
||||||
}
|
import org.hl7.fhir.exceptions.FHIRFormatError;
|
||||||
}
|
import org.hl7.fhir.dstu3.formats.JsonParser;
|
||||||
}
|
import org.hl7.fhir.dstu3.model.Bundle;
|
||||||
|
import org.hl7.fhir.dstu3.model.Bundle.BundleEntryComponent;
|
||||||
}
|
import org.hl7.fhir.dstu3.model.Resource;
|
||||||
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
|
|
||||||
|
public class Unbundler {
|
||||||
|
|
||||||
|
public static void main(String[] args) throws Exception {
|
||||||
|
unbundle(args[0]);
|
||||||
|
}
|
||||||
|
|
||||||
|
private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
|
||||||
|
String folder = Utilities.getDirectoryForFile(src);
|
||||||
|
Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
|
||||||
|
for (BundleEntryComponent be : bnd.getEntry()) {
|
||||||
|
Resource r = be.getResource();
|
||||||
|
if (r != null) {
|
||||||
|
String tgt = Utilities.path(folder, r.fhirType()+"-"+r.getId()+".json");
|
||||||
|
new JsonParser().compose(new FileOutputStream(tgt), r);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
||||||
|
|
|
||||||
|
|
@ -1,48 +1,69 @@
|
||||||
package org.hl7.fhir.r4.utils;
|
package org.hl7.fhir.r4.utils;
|
||||||
|
|
||||||
import java.io.File;
|
/*-
|
||||||
import java.io.FileInputStream;
|
* #%L
|
||||||
import java.io.FileNotFoundException;
|
* org.hl7.fhir.r4
|
||||||
import java.io.FileOutputStream;
|
* %%
|
||||||
import java.io.IOException;
|
* Copyright (C) 2014 - 2019 Health Level 7
|
||||||
|
* %%
|
||||||
import org.apache.commons.lang3.StringUtils;
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
import org.hl7.fhir.r4.model.ValueSet;
|
* you may not use this file except in compliance with the License.
|
||||||
import org.hl7.fhir.exceptions.FHIRFormatError;
|
* You may obtain a copy of the License at
|
||||||
import org.hl7.fhir.r4.formats.JsonParser;
|
*
|
||||||
import org.hl7.fhir.r4.model.Bundle;
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
import org.hl7.fhir.r4.model.Bundle.BundleEntryComponent;
|
*
|
||||||
import org.hl7.fhir.r4.model.MetadataResource;
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
import org.hl7.fhir.r4.model.Resource;
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
public class Unbundler {
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
public static void main(String[] args) throws Exception {
|
*/
|
||||||
unbundle(args[0]);
|
|
||||||
}
|
|
||||||
|
import java.io.File;
|
||||||
|
import java.io.FileInputStream;
|
||||||
private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
|
import java.io.FileNotFoundException;
|
||||||
String folder = Utilities.getDirectoryForFile(src);
|
import java.io.FileOutputStream;
|
||||||
Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
|
import java.io.IOException;
|
||||||
for (BundleEntryComponent be : bnd.getEntry()) {
|
|
||||||
Resource r = be.getResource();
|
import org.apache.commons.lang3.StringUtils;
|
||||||
if (r != null) {
|
import org.hl7.fhir.r4.model.ValueSet;
|
||||||
if (StringUtils.isBlank(r.getId())) {
|
import org.hl7.fhir.exceptions.FHIRFormatError;
|
||||||
if (r instanceof MetadataResource)
|
import org.hl7.fhir.r4.formats.JsonParser;
|
||||||
r.setId(tail((MetadataResource) r));
|
import org.hl7.fhir.r4.model.Bundle;
|
||||||
}
|
import org.hl7.fhir.r4.model.Bundle.BundleEntryComponent;
|
||||||
if (!StringUtils.isBlank(r.getId())) {
|
import org.hl7.fhir.r4.model.MetadataResource;
|
||||||
String tgt = Utilities.path(folder, r.fhirType()+"-"+r.getId()+".json");
|
import org.hl7.fhir.r4.model.Resource;
|
||||||
if (!new File(tgt).exists())
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
new JsonParser().compose(new FileOutputStream(tgt), r);
|
|
||||||
}
|
public class Unbundler {
|
||||||
}
|
|
||||||
}
|
public static void main(String[] args) throws Exception {
|
||||||
}
|
unbundle(args[0]);
|
||||||
|
}
|
||||||
private static String tail(MetadataResource r) {
|
|
||||||
return r.getUrl().contains("/") ? r.getUrl().substring(r.getUrl().lastIndexOf("/")+1) : null;
|
|
||||||
}
|
private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
|
||||||
}
|
String folder = Utilities.getDirectoryForFile(src);
|
||||||
|
Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
|
||||||
|
for (BundleEntryComponent be : bnd.getEntry()) {
|
||||||
|
Resource r = be.getResource();
|
||||||
|
if (r != null) {
|
||||||
|
if (StringUtils.isBlank(r.getId())) {
|
||||||
|
if (r instanceof MetadataResource)
|
||||||
|
r.setId(tail((MetadataResource) r));
|
||||||
|
}
|
||||||
|
if (!StringUtils.isBlank(r.getId())) {
|
||||||
|
String tgt = Utilities.path(folder, r.fhirType()+"-"+r.getId()+".json");
|
||||||
|
if (!new File(tgt).exists())
|
||||||
|
new JsonParser().compose(new FileOutputStream(tgt), r);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
private static String tail(MetadataResource r) {
|
||||||
|
return r.getUrl().contains("/") ? r.getUrl().substring(r.getUrl().lastIndexOf("/")+1) : null;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
|
||||||
|
|
@ -1,5 +1,25 @@
|
||||||
package org.hl7.fhir.r5.openapi;
|
package org.hl7.fhir.r5.openapi;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* org.hl7.fhir.r5
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2019 Health Level 7
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import java.util.HashSet;
|
import java.util.HashSet;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
import java.util.Set;
|
import java.util.Set;
|
||||||
|
|
|
||||||
File diff suppressed because it is too large
Load Diff
|
|
@ -1,5 +1,25 @@
|
||||||
package org.hl7.fhir.r5.utils;
|
package org.hl7.fhir.r5.utils;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* org.hl7.fhir.r5
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2019 Health Level 7
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import java.io.File;
|
import java.io.File;
|
||||||
import java.io.FileInputStream;
|
import java.io.FileInputStream;
|
||||||
import java.io.FileNotFoundException;
|
import java.io.FileNotFoundException;
|
||||||
|
|
|
||||||
|
|
@ -1,33 +1,54 @@
|
||||||
package org.hl7.fhir.r5.utils;
|
package org.hl7.fhir.r5.utils;
|
||||||
|
|
||||||
import java.io.FileInputStream;
|
/*-
|
||||||
import java.io.FileNotFoundException;
|
* #%L
|
||||||
import java.io.FileOutputStream;
|
* org.hl7.fhir.r5
|
||||||
import java.io.IOException;
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2019 Health Level 7
|
||||||
import org.hl7.fhir.exceptions.FHIRFormatError;
|
* %%
|
||||||
import org.hl7.fhir.r5.formats.JsonParser;
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
import org.hl7.fhir.r5.model.Bundle;
|
* you may not use this file except in compliance with the License.
|
||||||
import org.hl7.fhir.r5.model.Bundle.BundleEntryComponent;
|
* You may obtain a copy of the License at
|
||||||
import org.hl7.fhir.r5.model.Resource;
|
*
|
||||||
import org.hl7.fhir.utilities.Utilities;
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
public class Unbundler {
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
public static void main(String[] args) throws Exception {
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
unbundle(args[0]);
|
* See the License for the specific language governing permissions and
|
||||||
}
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
|
*/
|
||||||
String folder = Utilities.getDirectoryForFile(src);
|
|
||||||
Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
|
|
||||||
for (BundleEntryComponent be : bnd.getEntry()) {
|
import java.io.FileInputStream;
|
||||||
Resource r = be.getResource();
|
import java.io.FileNotFoundException;
|
||||||
if (r != null) {
|
import java.io.FileOutputStream;
|
||||||
String tgt = Utilities.path(folder, r.fhirType()+"-"+r.getId()+".json");
|
import java.io.IOException;
|
||||||
new JsonParser().compose(new FileOutputStream(tgt), r);
|
|
||||||
}
|
import org.hl7.fhir.exceptions.FHIRFormatError;
|
||||||
}
|
import org.hl7.fhir.r5.formats.JsonParser;
|
||||||
}
|
import org.hl7.fhir.r5.model.Bundle;
|
||||||
|
import org.hl7.fhir.r5.model.Bundle.BundleEntryComponent;
|
||||||
}
|
import org.hl7.fhir.r5.model.Resource;
|
||||||
|
import org.hl7.fhir.utilities.Utilities;
|
||||||
|
|
||||||
|
public class Unbundler {
|
||||||
|
|
||||||
|
public static void main(String[] args) throws Exception {
|
||||||
|
unbundle(args[0]);
|
||||||
|
}
|
||||||
|
|
||||||
|
private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
|
||||||
|
String folder = Utilities.getDirectoryForFile(src);
|
||||||
|
Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
|
||||||
|
for (BundleEntryComponent be : bnd.getEntry()) {
|
||||||
|
Resource r = be.getResource();
|
||||||
|
if (r != null) {
|
||||||
|
String tgt = Utilities.path(folder, r.fhirType()+"-"+r.getId()+".json");
|
||||||
|
new JsonParser().compose(new FileOutputStream(tgt), r);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
||||||
|
|
|
||||||
|
|
@ -1,5 +1,25 @@
|
||||||
package org.hl7.fhir.utilities;
|
package org.hl7.fhir.utilities;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* org.hl7.fhir.utilities
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2019 Health Level 7
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import javax.sound.sampled.AudioFormat;
|
import javax.sound.sampled.AudioFormat;
|
||||||
import javax.sound.sampled.AudioSystem;
|
import javax.sound.sampled.AudioSystem;
|
||||||
import javax.sound.sampled.SourceDataLine;
|
import javax.sound.sampled.SourceDataLine;
|
||||||
|
|
|
||||||
|
|
@ -1,5 +1,25 @@
|
||||||
package org.hl7.fhir.utilities;
|
package org.hl7.fhir.utilities;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* org.hl7.fhir.utilities
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2019 Health Level 7
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import net.sf.saxon.TransformerFactoryImpl;
|
import net.sf.saxon.TransformerFactoryImpl;
|
||||||
|
|
||||||
import javax.xml.transform.Transformer;
|
import javax.xml.transform.Transformer;
|
||||||
|
|
|
||||||
|
|
@ -1,5 +1,25 @@
|
||||||
package org.hl7.fhir.r5.validation;
|
package org.hl7.fhir.r5.validation;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* org.hl7.fhir.validation
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2019 Health Level 7
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import java.util.*;
|
import java.util.*;
|
||||||
import java.util.stream.*;
|
import java.util.stream.*;
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -9,9 +9,9 @@ package org.hl7.fhir.r5.validation;
|
||||||
* Licensed under the Apache License, Version 2.0 (the "License");
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
* you may not use this file except in compliance with the License.
|
* you may not use this file except in compliance with the License.
|
||||||
* You may obtain a copy of the License at
|
* You may obtain a copy of the License at
|
||||||
*
|
*
|
||||||
* http://www.apache.org/licenses/LICENSE-2.0
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
*
|
*
|
||||||
* Unless required by applicable law or agreed to in writing, software
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
* distributed under the License is distributed on an "AS IS" BASIS,
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
|
|
||||||
Loading…
Reference in New Issue