Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core
This commit is contained in:
Grahame Grieve
commit
e78042940e
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@ -0,0 +1,215 @@
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package org.hl7.fhir.validation.special;
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import com.google.gson.JsonSyntaxException;
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import org.hl7.fhir.r5.formats.JsonParser;
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import org.hl7.fhir.r5.context.IWorkerContext;
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import org.hl7.fhir.r5.formats.IParser;
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import org.hl7.fhir.r5.model.*;
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import org.hl7.fhir.r5.terminologies.utilities.TerminologyServiceErrorClass;
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import org.hl7.fhir.r5.terminologies.utilities.ValidationResult;
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import org.hl7.fhir.r5.test.utils.CompareUtilities;
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import org.hl7.fhir.utilities.FhirPublication;
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import org.hl7.fhir.utilities.TextFile;
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import org.hl7.fhir.utilities.Utilities;
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import org.hl7.fhir.utilities.i18n.I18nConstants;
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import org.hl7.fhir.utilities.json.model.JsonObject;
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import org.hl7.fhir.utilities.validation.ValidationOptions;
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import java.io.File;
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import java.io.FileNotFoundException;
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import java.io.IOException;
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public class TxServiceTestHelper {
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public static String getDiffForValidation(String id, IWorkerContext context, String name, Resource requestParameters, String expectedResponse, String lang, String fp, JsonObject externals, boolean isCodeSystem) throws JsonSyntaxException, FileNotFoundException, IOException {
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org.hl7.fhir.r5.model.Parameters p = (org.hl7.fhir.r5.model.Parameters) requestParameters;
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ValueSet valueSet = null;
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String valueSetUrl = null;
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if (!isCodeSystem) {
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if (p.hasParameter("valueSetVersion")) {
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valueSetUrl = p.getParameterValue("url").primitiveValue()+"|"+p.getParameterValue("valueSetVersion").primitiveValue();
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valueSet = context.fetchResource(ValueSet.class, p.getParameterValue("url").primitiveValue(), p.getParameterValue("valueSetVersion").primitiveValue());
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} else {
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valueSetUrl = p.getParameterValue("url").primitiveValue();
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valueSet = context.fetchResource(ValueSet.class, p.getParameterValue("url").primitiveValue());
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}
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}
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ValidationResult validationResult = null;
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String code = null;
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String system = null;
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String version = null;
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String display = null;
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CodeableConcept codeableConcept = null;
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org.hl7.fhir.r5.model.Parameters parameters = null;
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OperationOutcome operationOutcome = null;
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if (valueSet == null && valueSetUrl != null) {
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String msg = context.formatMessage(I18nConstants.UNABLE_TO_RESOLVE_VALUE_SET_, valueSetUrl);
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operationOutcome = new OperationOutcome();
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CodeableConcept codeableConceptWhenNullValueSet = operationOutcome.addIssue().setSeverity(OperationOutcome.IssueSeverity.ERROR).setCode(OperationOutcome.IssueType.NOTFOUND).getDetails();
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codeableConceptWhenNullValueSet.addCoding("http://hl7.org/fhir/tools/CodeSystem/tx-issue-type", "not-found", null);
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codeableConceptWhenNullValueSet.setText(msg);
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} else {
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ValidationOptions options = new ValidationOptions(FhirPublication.R5);
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if (p.hasParameter("displayLanguage")) {
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options = options.withLanguage(p.getParameterString("displayLanguage"));
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} else if (lang != null ) {
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options = options.withLanguage(lang);
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}
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if (p.hasParameter("valueset-membership-only") && "true".equals(p.getParameterString("valueset-membership-only"))) {
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options = options.withCheckValueSetOnly();
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}
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if (p.hasParameter("lenient-display-validation") && "true".equals(p.getParameterString("lenient-display-validation"))) {
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options = options.setDisplayWarningMode(true);
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}
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if (p.hasParameter("activeOnly") && "true".equals(p.getParameterString("activeOnly"))) {
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options = options.setActiveOnly(true);
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}
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context.getExpansionParameters().clearParameters("includeAlternateCodes");
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for (Parameters.ParametersParameterComponent pp : p.getParameter()) {
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if ("includeAlternateCodes".equals(pp.getName())) {
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context.getExpansionParameters().addParameter(pp.copy());
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}
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}
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if (p.hasParameter("code")) {
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code = p.getParameterString("code");
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system = p.getParameterString(isCodeSystem ? "url" : "system");
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version = p.getParameterString(isCodeSystem ? "version" : "systemVersion");
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display = p.getParameterString("display");
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validationResult = context.validateCode(options.withGuessSystem(),
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p.getParameterString(isCodeSystem ? "url" : "system"), p.getParameterString(isCodeSystem ? "version" : "systemVersion"),
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p.getParameterString("code"), p.getParameterString("display"), valueSet);
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} else if (p.hasParameter("coding")) {
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Coding coding = (Coding) p.getParameterValue("coding");
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code = coding.getCode();
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system = coding.getSystem();
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version = coding.getVersion();
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display = coding.getDisplay();
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validationResult = context.validateCode(options, coding, valueSet);
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} else if (p.hasParameter("codeableConcept")) {
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codeableConcept = (CodeableConcept) p.getParameterValue("codeableConcept");
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validationResult = context.validateCode(options, codeableConcept, valueSet);
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} else {
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throw new Error("validate not done yet for this steup");
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}
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}
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if (operationOutcome == null && validationResult != null && validationResult.getSeverity() == org.hl7.fhir.utilities.validation.ValidationMessage.IssueSeverity.FATAL) {
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operationOutcome = new OperationOutcome();
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operationOutcome.getIssue().addAll(validationResult.getIssues());
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}
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if (operationOutcome != null) {
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TxTesterSorters.sortOperationOutcome(operationOutcome);
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TxTesterScrubbers.scrubOO(operationOutcome, false);
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String actualResponse = new JsonParser().setOutputStyle(IParser.OutputStyle.PRETTY).composeString(operationOutcome);
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writeDiffToFileSystem( name, expectedResponse, actualResponse);
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String diff = CompareUtilities.checkJsonSrcIsSame(id, expectedResponse, actualResponse, externals);
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if (diff != null) {
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Utilities.createDirectory(Utilities.getDirectoryForFile(fp));
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TextFile.stringToFile(actualResponse, fp);
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System.out.println("Test "+name+"failed: "+diff);
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}
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return diff;
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} else {
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if (parameters == null) {
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parameters = new org.hl7.fhir.r5.model.Parameters();
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if (validationResult.getSystem() != null) {
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parameters.addParameter("system", new UriType(validationResult.getSystem()));
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} else if (system != null) {
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parameters.addParameter("system", new UriType(system));
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}
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if (validationResult.getCode() != null) {
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if (code != null && !code.equals(validationResult.getCode())) {
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parameters.addParameter("code", new CodeType(code));
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parameters.addParameter("normalized-code", new CodeType(validationResult.getCode()));
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} else {
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parameters.addParameter("code", new CodeType(validationResult.getCode()));
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}
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} else if (code != null) {
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parameters.addParameter("code", new CodeType(code));
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}
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if (validationResult.getSeverity() == org.hl7.fhir.utilities.validation.ValidationMessage.IssueSeverity.ERROR) {
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parameters.addParameter("result", false);
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} else {
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parameters.addParameter("result", true);
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}
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if (validationResult.getMessage() != null) {
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parameters.addParameter("message", validationResult.getMessage());
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}
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if (validationResult.getVersion() != null) {
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parameters.addParameter("version", validationResult.getVersion());
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} else if (version != null) {
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parameters.addParameter("version", new StringType(version));
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}
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if (validationResult.getDisplay() != null) {
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parameters.addParameter("display", validationResult.getDisplay());
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} else if (display != null) {
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parameters.addParameter("display", new StringType(display));
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}
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// if (vm.getCodeableConcept() != null) {
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// res.addParameter("codeableConcept", vm.getCodeableConcept());
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// } else
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if (codeableConcept != null) {
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parameters.addParameter("codeableConcept", codeableConcept);
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}
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if (validationResult.isInactive()) {
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parameters.addParameter("inactive", true);
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}
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if (validationResult.getStatus() != null) {
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parameters.addParameter("status", validationResult.getStatus());
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}
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if (validationResult.getUnknownSystems() != null) {
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for (String s : validationResult.getUnknownSystems()) {
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parameters.addParameter(validationResult.getErrorClass() == TerminologyServiceErrorClass.CODESYSTEM_UNSUPPORTED ? "x-caused-by-unknown-system" : "x-unknown-system", new CanonicalType(s));
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}
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}
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if (validationResult.getIssues().size() > 0) {
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operationOutcome = new OperationOutcome();
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operationOutcome.getIssue().addAll(validationResult.getIssues());
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parameters.addParameter().setName("issues").setResource(operationOutcome);
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}
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}
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TxTesterSorters.sortParameters(parameters);
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TxTesterScrubbers.scrubParams(parameters);
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String actualResponse = new JsonParser().setOutputStyle(IParser.OutputStyle.PRETTY).composeString(parameters);
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writeDiffToFileSystem(name, expectedResponse, actualResponse);
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String diff = CompareUtilities.checkJsonSrcIsSame(id, expectedResponse, actualResponse, externals);
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if (diff != null) {
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Utilities.createDirectory(Utilities.getDirectoryForFile(fp));
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TextFile.stringToFile(actualResponse, fp);
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System.out.println("Test "+name+"failed: "+diff);
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}
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return diff;
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}
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}
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public static void writeDiffToFileSystem(String testName, String expected, String actual) throws IOException {
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String rootDirectory = System.getenv("TX_SERVICE_TEST_DIFF_TARGET");
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if (rootDirectory == null || rootDirectory.isEmpty()) {
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return;
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}
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String fullExpected = rootDirectory + "/expected/";
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String fullActual = rootDirectory + "/actual/";
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File expectedDirectory = new File(fullExpected);
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if (!expectedDirectory.exists()) {
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expectedDirectory.mkdirs();
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}
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File actualDirectory = new File(fullActual);
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if (!actualDirectory.exists()) {
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actualDirectory.mkdirs();
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}
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TextFile.stringToFile(expected, fullExpected + testName + ".json");
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TextFile.stringToFile(actual, fullActual + testName + ".json");
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}
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}
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@ -0,0 +1,55 @@
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package org.hl7.fhir.validation.special;
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import lombok.Getter;
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import org.hl7.fhir.r5.test.utils.TestingUtilities;
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import org.hl7.fhir.utilities.json.model.JsonObject;
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import java.io.IOException;
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import java.util.*;
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public class TxTestData {
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@Getter
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private final JsonObject manifest;
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@Getter
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private final JsonObject externals;
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@Getter
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private final List<Object[]> testData;
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private TxTestData(List<Object[]> testData, JsonObject manifest, JsonObject externals) throws IOException {
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this.testData = testData;
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this.manifest = manifest;
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this.externals = externals;
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}
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public static TxTestData loadTestDataFromDefaultClassPath() throws IOException {
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String contents = TestingUtilities.loadTestResource("tx", "test-cases.json");
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String externalSource = TestingUtilities.loadTestResource("tx", "messages-tx.fhir.org.json");
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JsonObject externals = org.hl7.fhir.utilities.json.parser.JsonParser.parseObject(externalSource);
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Map<String, TxTestSetup> examples = new HashMap<String, TxTestSetup>();
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JsonObject manifest = org.hl7.fhir.utilities.json.parser.JsonParser.parseObject(contents);
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for (JsonObject suite : manifest.getJsonObjects("suites")) {
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if (!"tx.fhir.org".equals(suite.asString("mode"))) {
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String sn = suite.asString("name");
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for (JsonObject test : suite.getJsonObjects("tests")) {
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String tn = test.asString("name");
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examples.put(sn + "." + tn, new TxTestSetup(suite, test));
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}
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}
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}
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List<String> names = new ArrayList<String>(examples.size());
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names.addAll(examples.keySet());
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Collections.sort(names);
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List<Object[]> testData = new ArrayList<Object[]>(examples.size());
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for (String id : names) {
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testData.add(new Object[]{id, examples.get(id)});
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}
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return new TxTestData(testData, manifest, externals);
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}
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}
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@ -0,0 +1,17 @@
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package org.hl7.fhir.validation.special;
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import lombok.Getter;
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import org.hl7.fhir.utilities.json.model.JsonObject;
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public class TxTestSetup {
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public TxTestSetup(JsonObject suite, JsonObject test) {
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this.suite = suite;
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this.test = test;
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}
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@Getter
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private JsonObject suite;
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@Getter
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private JsonObject test;
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}
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@ -4,11 +4,6 @@ import java.io.File;
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import java.io.FileNotFoundException;
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import java.io.IOException;
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import java.io.InputStream;
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import java.util.ArrayList;
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import java.util.Collections;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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import org.apache.commons.io.IOUtils;
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import org.hl7.fhir.convertors.factory.VersionConvertorFactory_10_50;
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@ -21,34 +16,27 @@ import org.hl7.fhir.exceptions.FHIRFormatError;
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import org.hl7.fhir.r5.formats.IParser.OutputStyle;
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import org.hl7.fhir.r5.formats.JsonParser;
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import org.hl7.fhir.r5.formats.XmlParser;
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import org.hl7.fhir.r5.model.CanonicalType;
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import org.hl7.fhir.r5.model.CodeType;
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import org.hl7.fhir.r5.model.StringType;
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import org.hl7.fhir.r5.model.CodeableConcept;
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import org.hl7.fhir.r5.model.Coding;
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import org.hl7.fhir.r5.model.Constants;
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import org.hl7.fhir.r5.model.OperationOutcome;
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import org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity;
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import org.hl7.fhir.r5.model.OperationOutcome.IssueType;
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import org.hl7.fhir.r5.model.OperationOutcome.OperationOutcomeIssueComponent;
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import org.hl7.fhir.r5.model.Parameters.ParametersParameterComponent;
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import org.hl7.fhir.r5.model.Resource;
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import org.hl7.fhir.r5.model.UriType;
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import org.hl7.fhir.r5.model.ValueSet;
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import org.hl7.fhir.r5.model.ValueSet.ValueSetExpansionParameterComponent;
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import org.hl7.fhir.r5.terminologies.expansion.ValueSetExpansionOutcome;
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import org.hl7.fhir.r5.terminologies.utilities.TerminologyServiceErrorClass;
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import org.hl7.fhir.r5.terminologies.utilities.ValidationResult;
|
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import org.hl7.fhir.r5.test.utils.CompareUtilities;
|
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import org.hl7.fhir.r5.test.utils.TestingUtilities;
|
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import org.hl7.fhir.utilities.FhirPublication;
|
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import org.hl7.fhir.utilities.TextFile;
|
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import org.hl7.fhir.utilities.Utilities;
|
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import org.hl7.fhir.utilities.filesystem.ManagedFileAccess;
|
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import org.hl7.fhir.utilities.i18n.I18nConstants;
|
||||
import org.hl7.fhir.utilities.json.model.JsonObject;
|
||||
import org.hl7.fhir.utilities.validation.ValidationOptions;
|
||||
import org.hl7.fhir.validation.ValidationEngine;
|
||||
import org.hl7.fhir.validation.special.TxServiceTestHelper;
|
||||
import org.hl7.fhir.validation.special.TxTestSetup;
|
||||
import org.hl7.fhir.validation.special.TxTestData;
|
||||
import org.hl7.fhir.validation.special.TxTesterScrubbers;
|
||||
import org.hl7.fhir.validation.special.TxTesterSorters;
|
||||
import org.hl7.fhir.validation.tests.utilities.TestUtilities;
|
||||
|
|
@ -60,62 +48,30 @@ import org.junit.runners.Parameterized;
|
|||
import org.junit.runners.Parameterized.Parameters;
|
||||
|
||||
import com.google.common.base.Charsets;
|
||||
import com.google.gson.JsonSyntaxException;
|
||||
|
||||
import static org.junit.Assert.assertNull;
|
||||
|
||||
|
||||
@RunWith(Parameterized.class)
|
||||
public class TerminologyServiceTests {
|
||||
|
||||
public static class JsonObjectPair {
|
||||
public JsonObjectPair(JsonObject suite, JsonObject test) {
|
||||
this.suite = suite;
|
||||
this.test = test;
|
||||
}
|
||||
private JsonObject suite;
|
||||
private JsonObject test;
|
||||
}
|
||||
|
||||
private static TxTestData testData;
|
||||
|
||||
@Parameters(name = "{index}: id {0}")
|
||||
public static Iterable<Object[]> data() throws IOException {
|
||||
|
||||
String contents = TestingUtilities.loadTestResource("tx", "test-cases.json");
|
||||
String externalSource = TestingUtilities.loadTestResource("tx", "messages-tx.fhir.org.json");
|
||||
externals = org.hl7.fhir.utilities.json.parser.JsonParser.parseObject(externalSource);
|
||||
|
||||
Map<String, JsonObjectPair> examples = new HashMap<String, JsonObjectPair>();
|
||||
manifest = org.hl7.fhir.utilities.json.parser.JsonParser.parseObject(contents);
|
||||
for (org.hl7.fhir.utilities.json.model.JsonObject suite : manifest.getJsonObjects("suites")) {
|
||||
if (!"tx.fhir.org".equals(suite.asString("mode"))) {
|
||||
String sn = suite.asString("name");
|
||||
for (org.hl7.fhir.utilities.json.model.JsonObject test : suite.getJsonObjects("tests")) {
|
||||
String tn = test.asString("name");
|
||||
examples.put(sn+"."+tn, new JsonObjectPair(suite, test));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
List<String> names = new ArrayList<String>(examples.size());
|
||||
names.addAll(examples.keySet());
|
||||
Collections.sort(names);
|
||||
|
||||
List<Object[]> objects = new ArrayList<Object[]>(examples.size());
|
||||
for (String id : names) {
|
||||
objects.add(new Object[]{id, examples.get(id)});
|
||||
}
|
||||
return objects;
|
||||
testData = TxTestData.loadTestDataFromDefaultClassPath();
|
||||
return testData.getTestData();
|
||||
}
|
||||
|
||||
private static org.hl7.fhir.utilities.json.model.JsonObject manifest;
|
||||
private static org.hl7.fhir.utilities.json.model.JsonObject externals;
|
||||
private JsonObjectPair setup;
|
||||
private String version;
|
||||
private String name;
|
||||
private final TxTestSetup setup;
|
||||
private final String version;
|
||||
private final String name;
|
||||
|
||||
|
||||
private static ValidationEngine baseEngine;
|
||||
|
||||
public TerminologyServiceTests(String name, JsonObjectPair setup) {
|
||||
public TerminologyServiceTests(String name, TxTestSetup setup) {
|
||||
this.name = name;
|
||||
this.setup = setup;
|
||||
version = "5.0.0";
|
||||
|
|
@ -128,33 +84,35 @@ public class TerminologyServiceTests {
|
|||
baseEngine = TestUtilities.getValidationEngineNoTxServer("hl7.fhir.r5.core#5.0.0", FhirPublication.R5, "5.0.0");
|
||||
}
|
||||
ValidationEngine engine = new ValidationEngine(this.baseEngine);
|
||||
for (String s : setup.suite.forceArray("setup").asStrings()) {
|
||||
for (String s : setup.getSuite().forceArray("setup").asStrings()) {
|
||||
// System.out.println(s);
|
||||
Resource res = loadResource(s);
|
||||
engine.seeResource(res);
|
||||
}
|
||||
Resource req = loadResource(setup.test.asString("request"));
|
||||
String fn = setup.test.has("response:tx.fhir.org") ? setup.test.asString("response:tx.fhir.org") : setup.test.asString("response");
|
||||
Resource req = loadResource(setup.getTest().asString("request"));
|
||||
String fn = setup.getTest().has("response:tx.fhir.org") ? setup.getTest().asString("response:tx.fhir.org") : setup.getTest().asString("response");
|
||||
String resp = TestingUtilities.loadTestResource("tx", fn);
|
||||
String fp = Utilities.path("[tmp]", "tx", fn);
|
||||
JsonObject ext = externals == null ? null : externals.getJsonObject(fn);
|
||||
JsonObject ext = testData.getExternals() == null ? null : testData.getExternals().getJsonObject(fn);
|
||||
File fo = ManagedFileAccess.file(fp);
|
||||
if (fo.exists()) {
|
||||
fo.delete();
|
||||
}
|
||||
if (setup.test.has("profile")) {
|
||||
engine.getContext().setExpansionParameters((org.hl7.fhir.r5.model.Parameters) loadResource(setup.test.asString("profile")));
|
||||
if (setup.getTest().has("profile")) {
|
||||
engine.getContext().setExpansionParameters((org.hl7.fhir.r5.model.Parameters) loadResource(setup.getTest().asString("profile")));
|
||||
} else {
|
||||
engine.getContext().setExpansionParameters((org.hl7.fhir.r5.model.Parameters) loadResource("parameters-default.json"));
|
||||
}
|
||||
if (setup.test.asString("operation").equals("expand")) {
|
||||
expand(setup.test.str("name"), engine, req, resp, setup.test.asString("Content-Language"), fp, ext);
|
||||
} else if (setup.test.asString("operation").equals("validate-code")) {
|
||||
validate(setup.test.str("name"), engine, setup.test.asString("name"), req, resp, setup.test.asString("Content-Language"), fp, ext, false);
|
||||
} else if (setup.test.asString("operation").equals("cs-validate-code")) {
|
||||
validate(setup.test.str("name"), engine, setup.test.asString("name"), req, resp, setup.test.asString("Content-Language"), fp, ext, true);
|
||||
if (setup.getTest().asString("operation").equals("expand")) {
|
||||
expand(setup.getTest().str("name"), engine, req, resp, setup.getTest().asString("Content-Language"), fp, ext);
|
||||
} else if (setup.getTest().asString("operation").equals("validate-code")) {
|
||||
String diff = TxServiceTestHelper.getDiffForValidation(setup.getTest().str("name"), engine.getContext(), setup.getTest().asString("name"), req, resp, setup.getTest().asString("Content-Language"), fp, ext, false);
|
||||
assertNull(diff, diff);
|
||||
} else if (setup.getTest().asString("operation").equals("cs-validate-code")) {
|
||||
String diff = TxServiceTestHelper.getDiffForValidation(setup.getTest().str("name"), engine.getContext(), setup.getTest().asString("name"), req, resp, setup.getTest().asString("Content-Language"), fp, ext, true);
|
||||
assertNull(diff, diff);
|
||||
} else {
|
||||
Assertions.fail("Unknown Operation "+setup.test.asString("operation"));
|
||||
Assertions.fail("Unknown Operation "+ setup.getTest().asString("operation"));
|
||||
}
|
||||
}
|
||||
|
||||
|
|
@ -244,167 +202,7 @@ public class TerminologyServiceTests {
|
|||
}
|
||||
}
|
||||
|
||||
private void validate(String id, ValidationEngine engine, String name, Resource req, String resp, String lang, String fp, JsonObject ext, boolean isCS) throws JsonSyntaxException, FileNotFoundException, IOException {
|
||||
org.hl7.fhir.r5.model.Parameters p = (org.hl7.fhir.r5.model.Parameters) req;
|
||||
ValueSet vs = null;
|
||||
String vsurl = null;
|
||||
if (!isCS) {
|
||||
if (p.hasParameter("valueSetVersion")) {
|
||||
vsurl = p.getParameterValue("url").primitiveValue()+"|"+p.getParameterValue("valueSetVersion").primitiveValue();
|
||||
vs = engine.getContext().fetchResource(ValueSet.class, p.getParameterValue("url").primitiveValue(), p.getParameterValue("valueSetVersion").primitiveValue());
|
||||
} else {
|
||||
vsurl = p.getParameterValue("url").primitiveValue();
|
||||
vs = engine.getContext().fetchResource(ValueSet.class, p.getParameterValue("url").primitiveValue());
|
||||
}
|
||||
}
|
||||
ValidationResult vm = null;
|
||||
String code = null;
|
||||
String system = null;
|
||||
String version = null;
|
||||
String display = null;
|
||||
CodeableConcept cc = null;
|
||||
org.hl7.fhir.r5.model.Parameters res = null;
|
||||
OperationOutcome oo = null;
|
||||
|
||||
if (vs == null && vsurl != null) {
|
||||
String msg = engine.getContext().formatMessage(I18nConstants.UNABLE_TO_RESOLVE_VALUE_SET_, vsurl);
|
||||
oo = new OperationOutcome();
|
||||
CodeableConcept cct = oo.addIssue().setSeverity(IssueSeverity.ERROR).setCode(IssueType.NOTFOUND).getDetails();
|
||||
cct.addCoding("http://hl7.org/fhir/tools/CodeSystem/tx-issue-type", "not-found", null);
|
||||
cct.setText(msg);
|
||||
} else {
|
||||
ValidationOptions options = new ValidationOptions(FhirPublication.R5);
|
||||
if (p.hasParameter("displayLanguage")) {
|
||||
options = options.withLanguage(p.getParameterString("displayLanguage"));
|
||||
} else if (lang != null ) {
|
||||
options = options.withLanguage(lang);
|
||||
}
|
||||
if (p.hasParameter("valueset-membership-only") && "true".equals(p.getParameterString("valueset-membership-only"))) {
|
||||
options = options.withCheckValueSetOnly();
|
||||
}
|
||||
if (p.hasParameter("lenient-display-validation") && "true".equals(p.getParameterString("lenient-display-validation"))) {
|
||||
options = options.setDisplayWarningMode(true);
|
||||
}
|
||||
if (p.hasParameter("activeOnly") && "true".equals(p.getParameterString("activeOnly"))) {
|
||||
options = options.setActiveOnly(true);
|
||||
}
|
||||
engine.getContext().getExpansionParameters().clearParameters("includeAlternateCodes");
|
||||
for (ParametersParameterComponent pp : p.getParameter()) {
|
||||
if ("includeAlternateCodes".equals(pp.getName())) {
|
||||
engine.getContext().getExpansionParameters().addParameter(pp.copy());
|
||||
}
|
||||
}
|
||||
if (p.hasParameter("code")) {
|
||||
code = p.getParameterString("code");
|
||||
system = p.getParameterString(isCS ? "url" : "system");
|
||||
version = p.getParameterString(isCS ? "version" : "systemVersion");
|
||||
display = p.getParameterString("display");
|
||||
vm = engine.getContext().validateCode(options.withGuessSystem(),
|
||||
p.getParameterString(isCS ? "url" : "system"), p.getParameterString(isCS ? "version" : "systemVersion"),
|
||||
p.getParameterString("code"), p.getParameterString("display"), vs);
|
||||
} else if (p.hasParameter("coding")) {
|
||||
Coding coding = (Coding) p.getParameterValue("coding");
|
||||
code = coding.getCode();
|
||||
system = coding.getSystem();
|
||||
version = coding.getVersion();
|
||||
display = coding.getDisplay();
|
||||
vm = engine.getContext().validateCode(options, coding, vs);
|
||||
} else if (p.hasParameter("codeableConcept")) {
|
||||
cc = (CodeableConcept) p.getParameterValue("codeableConcept");
|
||||
vm = engine.getContext().validateCode(options, cc, vs);
|
||||
} else {
|
||||
throw new Error("validate not done yet for this steup");
|
||||
}
|
||||
}
|
||||
if (oo == null && vm != null && vm.getSeverity() == org.hl7.fhir.utilities.validation.ValidationMessage.IssueSeverity.FATAL) {
|
||||
oo = new OperationOutcome();
|
||||
oo.getIssue().addAll(vm.getIssues());
|
||||
}
|
||||
if (oo != null) {
|
||||
TxTesterSorters.sortOperationOutcome(oo);
|
||||
TxTesterScrubbers.scrubOO(oo, false);
|
||||
|
||||
String pj = new JsonParser().setOutputStyle(OutputStyle.PRETTY).composeString(oo);
|
||||
String diff = CompareUtilities.checkJsonSrcIsSame(id, resp, pj, ext);
|
||||
if (diff != null) {
|
||||
Utilities.createDirectory(Utilities.getDirectoryForFile(fp));
|
||||
TextFile.stringToFile(pj, fp);
|
||||
System.out.println("Test "+name+"failed: "+diff);
|
||||
}
|
||||
Assertions.assertTrue(diff == null, diff);
|
||||
} else {
|
||||
if (res == null) {
|
||||
res = new org.hl7.fhir.r5.model.Parameters();
|
||||
if (vm.getSystem() != null) {
|
||||
res.addParameter("system", new UriType(vm.getSystem()));
|
||||
} else if (system != null) {
|
||||
res.addParameter("system", new UriType(system));
|
||||
}
|
||||
if (vm.getCode() != null) {
|
||||
if (code != null && !code.equals(vm.getCode())) {
|
||||
res.addParameter("code", new CodeType(code));
|
||||
res.addParameter("normalized-code", new CodeType(vm.getCode()));
|
||||
} else {
|
||||
res.addParameter("code", new CodeType(vm.getCode()));
|
||||
}
|
||||
} else if (code != null) {
|
||||
res.addParameter("code", new CodeType(code));
|
||||
}
|
||||
if (vm.getSeverity() == org.hl7.fhir.utilities.validation.ValidationMessage.IssueSeverity.ERROR) {
|
||||
res.addParameter("result", false);
|
||||
} else {
|
||||
res.addParameter("result", true);
|
||||
}
|
||||
if (vm.getMessage() != null) {
|
||||
res.addParameter("message", vm.getMessage());
|
||||
}
|
||||
if (vm.getVersion() != null) {
|
||||
res.addParameter("version", vm.getVersion());
|
||||
} else if (version != null) {
|
||||
res.addParameter("version", new StringType(version));
|
||||
}
|
||||
if (vm.getDisplay() != null) {
|
||||
res.addParameter("display", vm.getDisplay());
|
||||
} else if (display != null) {
|
||||
res.addParameter("display", new StringType(display));
|
||||
}
|
||||
// if (vm.getCodeableConcept() != null) {
|
||||
// res.addParameter("codeableConcept", vm.getCodeableConcept());
|
||||
// } else
|
||||
if (cc != null) {
|
||||
res.addParameter("codeableConcept", cc);
|
||||
}
|
||||
if (vm.isInactive()) {
|
||||
res.addParameter("inactive", true);
|
||||
}
|
||||
if (vm.getStatus() != null) {
|
||||
res.addParameter("status", vm.getStatus());
|
||||
}
|
||||
if (vm.getUnknownSystems() != null) {
|
||||
for (String s : vm.getUnknownSystems()) {
|
||||
res.addParameter(vm.getErrorClass() == TerminologyServiceErrorClass.CODESYSTEM_UNSUPPORTED ? "x-caused-by-unknown-system" : "x-unknown-system", new CanonicalType(s));
|
||||
}
|
||||
}
|
||||
if (vm.getIssues().size() > 0) {
|
||||
oo = new OperationOutcome();
|
||||
oo.getIssue().addAll(vm.getIssues());
|
||||
res.addParameter().setName("issues").setResource(oo);
|
||||
}
|
||||
}
|
||||
|
||||
TxTesterSorters.sortParameters(res);
|
||||
TxTesterScrubbers.scrubParams(res);
|
||||
|
||||
String pj = new JsonParser().setOutputStyle(OutputStyle.PRETTY).composeString(res);
|
||||
String diff = CompareUtilities.checkJsonSrcIsSame(id, resp, pj, ext);
|
||||
if (diff != null) {
|
||||
Utilities.createDirectory(Utilities.getDirectoryForFile(fp));
|
||||
TextFile.stringToFile(pj, fp);
|
||||
System.out.println("Test "+name+"failed: "+diff);
|
||||
}
|
||||
Assertions.assertTrue(diff == null, diff);
|
||||
}
|
||||
}
|
||||
|
||||
public Resource loadResource(String filename) throws IOException, FHIRFormatError, FileNotFoundException, FHIRException, DefinitionException {
|
||||
String contents = TestingUtilities.loadTestResource("tx", filename);
|
||||
|
|
|
|||
Loading…
Reference in New Issue