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WIP try refactor

This commit is contained in:
dotasek 2024-12-02 12:26:37 -05:00
parent 459020a426
commit ef9fb4c504
1 changed files with 59 additions and 54 deletions
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113
org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/InstanceValidator.java
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@ -38,19 +38,7 @@ import java.io.InputStream;
import java.math.BigDecimal;
import java.net.URI;
import java.net.URISyntaxException;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Calendar;
import java.util.Collection;
import java.util.Collections;
import java.util.EnumSet;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.Set;
import java.util.UUID;
import java.util.*;
import javax.annotation.Nonnull;
@ -1731,54 +1719,71 @@ public class InstanceValidator extends BaseValidator implements IResourceValidat
boolean ok = true;
if (vr != null) {
for (OperationOutcomeIssueComponent iss : vr.getIssues()) {
if (!iss.getDetails().hasCoding("http://hl7.org/fhir/tools/CodeSystem/tx-issue-type", "not-in-vs")
&& !iss.getDetails().hasCoding("http://hl7.org/fhir/tools/CodeSystem/tx-issue-type", "this-code-not-in-vs")
&& !(ignoreCantInfer || iss.getDetails().hasCoding("http://hl7.org/fhir/tools/CodeSystem/tx-issue-type", "cannot-infer"))) {
OperationOutcomeIssueComponent i = iss.copy();
if (i.getDetails().hasCoding("http://hl7.org/fhir/tools/CodeSystem/tx-issue-type", "not-found")) {
String msg = iss.getDetails().getText();
boolean isHL7 = msg == null ? false : msg.contains("http://hl7.org/fhir") || msg.contains("http://terminology.hl7.org");
org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity notFoundLevel = null;
String notFoundNote = null;
if (bs == null) {
notFoundLevel = org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.WARNING;
notFoundNote = null; // "binding=null";
} else if (bs == BindingStrength.REQUIRED && isHL7) {
notFoundLevel = org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.ERROR;
notFoundNote = "error because this is a required binding to an HL7 code system";
} else if (bs == BindingStrength.REQUIRED && unknownCodeSystemsCauseErrors) {
notFoundLevel = org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.ERROR;
notFoundNote = "error because this is a required binding";
} else if (bs == BindingStrength.REQUIRED) {
notFoundLevel = org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.WARNING;
notFoundNote = null; // "binding=required";
} else if (bs == BindingStrength.EXTENSIBLE) {
notFoundLevel = org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.WARNING;
notFoundNote = null; // "binding=extensible";
} else {
notFoundLevel = org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.WARNING;
notFoundNote = null; // "binding="+bs.toCode();
}
if (notFoundLevel != null && i.getSeverity().isHigherThan(notFoundLevel)) { // && (vsurl != null && i.getDetails().getText().contains(vsurl))) {
i.setSeverity(notFoundLevel);
if (notFoundNote != null) {
i.getDetails().setText(i.getDetails().getText()+" ("+notFoundNote+")");
}
Optional<OperationOutcomeIssueComponent> processedTxIssue = processTxIssue(iss, ignoreCantInfer, bs);
if (processedTxIssue.isPresent()) {
var vmsg = txIssue(errors, null, vr.getTxLink(), element.line(), element.col(), path, processedTxIssue.get());
if (vmsg.isError()) {
ok = false;
}
}
if (baseOptions.isDisplayWarningMode() && i.getSeverity() == org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.ERROR && i.getDetails().hasCoding("http://hl7.org/fhir/tools/CodeSystem/tx-issue-type", "invalid-display")) {
i.setSeverity(org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.WARNING);
}
var vmsg = txIssue(errors, null, vr.getTxLink(), element.line(), element.col(), path, i);
if (vmsg.isError()) {
ok = false;
}
}
}
}
return ok;
}
private Optional<OperationOutcomeIssueComponent> processTxIssue(OperationOutcomeIssueComponent iss, boolean ignoreCantInfer, BindingStrength bs) {
if (iss.getDetails().hasCoding("http://hl7.org/fhir/tools/CodeSystem/tx-issue-type", "not-in-vs"))
{
return Optional.empty();
}
if (iss.getDetails().hasCoding("http://hl7.org/fhir/tools/CodeSystem/tx-issue-type", "this-code-not-in-vs"))
{
return Optional.empty();
}
if (ignoreCantInfer || iss.getDetails().hasCoding("http://hl7.org/fhir/tools/CodeSystem/tx-issue-type", "cannot-infer"))
{
return Optional.empty();
}
OperationOutcomeIssueComponent i = iss.copy();
if (i.getDetails().hasCoding("http://hl7.org/fhir/tools/CodeSystem/tx-issue-type", "not-found")) {
String msg = iss.getDetails().getText();
boolean isHL7 = msg == null ? false : msg.contains("http://hl7.org/fhir") || msg.contains("http://terminology.hl7.org");
org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity notFoundLevel = null;
String notFoundNote = null;
if (bs == null) {
notFoundLevel = org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.WARNING;
notFoundNote = null; // "binding=null";
} else if (bs == BindingStrength.REQUIRED && isHL7) {
notFoundLevel = org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.ERROR;
notFoundNote = "error because this is a required binding to an HL7 code system";
} else if (bs == BindingStrength.REQUIRED && unknownCodeSystemsCauseErrors) {
notFoundLevel = org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.ERROR;
notFoundNote = "error because this is a required binding";
} else if (bs == BindingStrength.REQUIRED) {
notFoundLevel = org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.WARNING;
notFoundNote = null; // "binding=required";
} else if (bs == BindingStrength.EXTENSIBLE) {
notFoundLevel = org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.WARNING;
notFoundNote = null; // "binding=extensible";
} else {
notFoundLevel = org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.WARNING;
notFoundNote = null; // "binding="+bs.toCode();
}
if (notFoundLevel != null && i.getSeverity().isHigherThan(notFoundLevel)) { // && (vsurl != null && i.getDetails().getText().contains(vsurl))) {
i.setSeverity(notFoundLevel);
if (notFoundNote != null) {
i.getDetails().setText(i.getDetails().getText()+" ("+notFoundNote+")");
}
}
}
if (baseOptions.isDisplayWarningMode() && i.getSeverity() == org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.ERROR && i.getDetails().hasCoding("http://hl7.org/fhir/tools/CodeSystem/tx-issue-type", "invalid-display")) {
i.setSeverity(org.hl7.fhir.r5.model.OperationOutcome.IssueSeverity.WARNING);
}
return Optional.of(i);
}
public boolean checkBindings(List<ValidationMessage> errors, String path, Element element, NodeStack stack, ValueSet valueset, Coding nextCoding) {
boolean ok = true;
if (isNotBlank(nextCoding.getCode()) && isNotBlank(nextCoding.getSystem()) && context.supportsSystem(nextCoding.getSystem(), baseOptions.getFhirVersion())) {