utilities for OID rework in R5

org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/elementmodel/ParserBase.java

@@ -120,7 +120,7 @@ public abstract class ParserBase {
   
   public Element parseSingle(InputStream stream) throws IOException, FHIRFormatError, DefinitionException, FHIRException {
     List<NamedElement> res = parse(stream);
-    if (res.size() == 1) {
+    if (res.size() == 0) {
       throw new FHIRException("Parsing FHIR content returned no elements in a context where one element is required");
     }
     if (res.size() != 1) {

org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/model/CanonicalResource.java

@@ -35,6 +35,10 @@ import java.util.ArrayList;
 import java.util.Date;
 import java.util.List;
 import org.hl7.fhir.utilities.Utilities;
+import org.hl7.fhir.utilities.json.JsonUtilities;
+
+import com.google.gson.JsonObject;
+
 import org.hl7.fhir.r5.model.Enumerations.*;
 import org.hl7.fhir.instance.model.api.IBaseBackboneElement;
 import org.hl7.fhir.exceptions.FHIRException;
@@ -568,5 +572,14 @@ public abstract class CanonicalResource extends DomainResource {
     return null;
   }
 
+  public String getOid() {
+    for (Identifier id : getIdentifier()) {
+      if ("urn:ietf:rfc:3986".equals(id.getSystem()) && id.hasValue() && id.getValue().startsWith("urn:oid:")) {
+        return id.getValue().substring(8);
+      }
+    }
+    return null;
+  }
+
 }
 

org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/terminologies/ConceptMapUtilities.java

@@ -0,0 +1,34 @@
+package org.hl7.fhir.r5.terminologies;
+
+import org.hl7.fhir.r5.model.ConceptMap;
+import org.hl7.fhir.r5.model.Identifier;
+import org.hl7.fhir.r5.model.ValueSet;
+
+public class ConceptMapUtilities {
+
+  public static boolean hasOID(ConceptMap cm) {
+    return getOID(cm) != null;
+  }
+
+  public static String getOID(ConceptMap cm) {
+    for (Identifier id : cm.getIdentifier()) {
+      if ("urn:ietf:rfc:3986".equals(id.getSystem()) && id.hasValue() && id.getValue().startsWith("urn:oid:"))
+        return id.getValue().substring(8);
+    }
+    return null;
+  }
+
+  public static void setOID(ConceptMap cm, String oid) {
+    if (!oid.startsWith("urn:oid:"))
+      oid = "urn:oid:" + oid;
+    for (Identifier id : cm.getIdentifier()) {
+      if ("urn:ietf:rfc:3986".equals(id.getSystem()) && id.hasValue() && id.getValue().startsWith("urn:oid:")) {
+        id.setValue(oid);
+        return;
+      }
+    }
+    cm.addIdentifier().setSystem("urn:ietf:rfc:3986").setValue(oid);
+  }
+
+
+}

org.hl7.fhir.utilities/src/main/java/org/hl7/fhir/utilities/xml/XMLUtil.java

@@ -461,6 +461,13 @@ public class XMLUtil {
     return builder.parse(new FileInputStream(filename));
   }
 
+  public static Document parseFileToDom(String filename, boolean ns) throws ParserConfigurationException, SAXException, IOException  {
+    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
+    factory.setNamespaceAware(ns);
+    DocumentBuilder builder = factory.newDocumentBuilder();
+    return builder.parse(new FileInputStream(filename));
+  }
+
   public static Element getLastChild(Element e) {
     if (e == null)
       return null;