Commit Graph

669 Commits

Author SHA1 Message Date
Grahame Grieve 711eae48e0
Merge pull request #1795 from brianpos/BP-fhirpath-tostring
fhirpath `tostring` implementation fix
2024-11-19 13:19:55 +11:00
dotasek cc75799664 Updating version to: 6.4.2-SNAPSHOT and incrementing test cases dependency. 2024-11-12 21:52:10 +00:00
dotasek d306cb0dcb Release: v6.4.1
## Validator Changes

* Support authentication for terminology servers (see https://confluence.hl7.org/display/FHIR/Using+fhir-settings.json)
* Fix issue where valdiator not retaining extension context when checking constraint expressions in profiles
* Validate min-length when found in extension
* Correct bug parsing json-property-key values with meant validation failed
* Fix problem validating json-property-key value pairs
* Fix special case r5 loading of terminology to fix validation error on ExampleScenario
* Improve handling of JSON format errors
* Fix bug where extension slices defined in other profiles are not found when processing slices based on extension
* Validate fhirpath expression in slice discriminators
* Fix slicing by type and profile to allow multiple options per slice
* List measure choices when a match by version can't be found
* Check server metadata when executing terminology test cases

## Other code changes

* More work on code generation for profiles
* Render min-length extension on profiles
* Clone SQL on FHIR engine to R4, and update FHIRPath engine based on R5 current code
* Update SQL on FHIR engine to allow push as well as pull
* Change R5 tx server to use http://tx.fhir.org/r5 (instead of /r4)
* Update output from tx-tester to include release ready statement
* Fix rendering of Logical Models for polymorphic elements, and rendering target profiles with versions
* Render contained resources in List resource
* #1790 - Fix versionFromCanonical returns system instead and systemFromCanonical returns version
***NO_CI***
2024-11-12 21:19:51 +00:00
dotasek 06fbc0c77b Roll back to fix release (again) 2024-11-12 15:42:50 -05:00
dotasek 63c77e52fa Release: v6.4.1
## Validator Changes

* Support authentication for terminology servers (see https://confluence.hl7.org/display/FHIR/Using+fhir-settings.json)
* Fix issue where valdiator not retaining extension context when checking constraint expressions in profiles
* Validate min-length when found in extension
* Correct bug parsing json-property-key values with meant validation failed
* Fix problem validating json-property-key value pairs
* Fix special case r5 loading of terminology to fix validation error on ExampleScenario
* Improve handling of JSON format errors
* Fix bug where extension slices defined in other profiles are not found when processing slices based on extension
* Validate fhirpath expression in slice discriminators
* Fix slicing by type and profile to allow multiple options per slice
* List measure choices when a match by version can't be found
* Check server metadata when executing terminology test cases

## Other code changes

* More work on code generation for profiles
* Render min-length extension on profiles
* Clone SQL on FHIR engine to R4, and update FHIRPath engine based on R5 current code
* Update SQL on FHIR engine to allow push as well as pull
* Change R5 tx server to use http://tx.fhir.org/r5 (instead of /r4)
* Update output from tx-tester to include release ready statement
* Fix rendering of Logical Models for polymorphic elements, and rendering target profiles with versions
* Render contained resources in List resource
* #1790 - Fix versionFromCanonical returns system instead and systemFromCanonical returns version
***NO_CI***
2024-11-12 18:54:04 +00:00
dotasek be330ba38a Rollback to fix release 2024-11-12 12:40:55 -05:00
dotasek 29cc135f6c Release: v6.4.1
## Validator Changes

* Support authentication for terminology servers (see https://confluence.hl7.org/display/FHIR/Using+fhir-settings.json)
* Fix issue where valdiator not retaining extension context when checking constraint expressions in profiles
* Validate min-length when found in extension
* Correct bug parsing json-property-key values with meant validation failed
* Fix problem validating json-property-key value pairs
* Fix special case r5 loading of terminology to fix validation error on ExampleScenario
* Improve handling of JSON format errors
* Fix bug where extension slices defined in other profiles are not found when processing slices based on extension
* Validate fhirpath expression in slice discriminators
* Fix slicing by type and profile to allow multiple options per slice
* List measure choices when a match by version can't be found
* Check server metadata when executing terminology test cases

## Other code changes

* More work on code generation for profiles
* Render min-length extension on profiles
* Clone SQL on FHIR engine to R4, and update FHIRPath engine based on R5 current code
* Update SQL on FHIR engine to allow push as well as pull
* Change R5 tx server to use http://tx.fhir.org/r5 (instead of /r4)
* Update output from tx-tester to include release ready statement
* Fix rendering of Logical Models for polymorphic elements, and rendering target profiles with versions
* Render contained resources in List resource
* #1790 - Fix versionFromCanonical returns system instead and systemFromCanonical returns version
***NO_CI***
2024-11-12 16:30:30 +00:00
Grahame Grieve 8a831a9e45 Start testing metadata in tx tests, and consequent bugs and library upgrades for that (patternMode in ComparisonUtilities) 2024-11-12 13:24:09 +10:30
dotasek 5cbb45abec Allow ManagedWebAccess to fetch specific server types for auth 2024-11-11 14:35:06 -05:00
Grahame Grieve 60acdd0b88 Add mode to web access 2024-11-09 18:39:12 +10:30
dotasek d724a27d95 Final rename 2024-11-08 14:35:36 -05:00
dotasek fb6a22c3b1 Clean up comments and JavaDoc 2024-11-08 14:29:40 -05:00
dotasek ebcbf4db49 More TODO erasures. Plus found missing functionality 2024-11-08 11:18:57 -05:00
dotasek 2bbfcb8845 Resolve all deletions enclosed in FIXME + fix headers in dstu2 postfeed 2024-11-08 11:08:06 -05:00
dotasek e9917defb0 Rename ...AccessBuilder classes to ...Accessor 2024-11-07 17:53:14 -05:00
dotasek 2c57f5954e Remove conflicting authorization header setting methods 2024-11-07 15:44:25 -05:00
dotasek afd9e7a471 Merge remote-tracking branch 'origin/master' into do-20241021-tx-auth 2024-11-06 19:19:53 -05:00
dotasek b6ef81c9f3 Switch to static fhirBuilder for all FhirRequestBuilders
+ Fix null user agent issue
+ Load ManagedWebAccess from FHIR settings
+ Add terminology servers to FhirSettings
2024-11-06 09:47:27 -05:00
dotasek bdc02a5622 Merge remote-tracking branch 'origin/master' into do-20241021-tx-auth 2024-11-01 09:16:36 -04:00
Grahame Grieve 4db933235a PECodeGenerator fixes 2024-11-01 23:11:45 +10:30
Grahame Grieve d58188748c Clone SQL on FHIR engine to R4, and update FHIRPath engine based on R5 current code 2024-11-01 08:05:43 +10:30
Brian Postlethwaite 01af08030f #1794
Update the implementation of the `toString` fhirpath function to: (pending FHIR-48737)
* not return the text 'null' when no primitive value exists (when extension only)
* throw an error if more than 1 item is to be returned (doesn't support collections)
* return an empty set when no primitive values exist (when extension only)
2024-10-31 10:04:57 +11:00
dotasek 2fdfaf8602 Removing leftover okttp usage 2024-10-29 18:32:58 -04:00
dotasek a5ef974c3d Use ManagedFhirWebAccess in r4 2024-10-29 17:07:41 -04:00
dotasek d8ca1cc144 Apply changes to r4b 2024-10-29 10:06:42 -04:00
dotasek b51ac15051 Fix for renamed class 2024-10-28 10:45:06 -04:00
dotasek 03b0c163be Merge branch 'master' into do-20241021-tx-auth 2024-10-25 13:56:06 -04:00
dotasek b33de12e49 WIP move accept to parameter 2024-10-24 13:57:51 -04:00
markiantorno 54d239a38a Updating version to: 6.4.1-SNAPSHOT and incrementing test cases dependency. 2024-10-24 14:15:50 +00:00
markiantorno 26c445c8fc Release: v6.4.0
## Validator Changes

* Improve warning messages about collections in SQL ViewDefinitions
* Fix type evaluation of .item() in FHIRPath
* Revise message about unknown usage context on additional binding
* Add support for code generation
* Add check for # in CanonicalResource.version
* Fix problem parsing urls in cds-hooks formats
* Fix issues with output folder running tx tests
* Fix bug evaluating resolve() in contained resources when doing slicing

## Other code changes

* Fix NPE processing markdown
* Capture missing snapshot generation messages
* Track OID status
* Improve rendering of coded values
* update tests for changes to PE code generation
* Tx Tests: Add support for special header on specific tests
* Tx Tests: Fix framework to handle diagnostics correctly
* Tx Tests: check http code in tx test cases
* Add support for NCI code rendering
* Adding missing lombok annotation (cannot build without it from scratch) (#1785)
* Remove Encounter Renderer
* Profile code generation fixes
* Add r4 code gen classes
* Draft work for tx server authentication (not landed yet)
* Move XXE safe SAXParserFactory and XMLReader instantiation to XMLUtil
* Bump commons-compress version
***NO_CI***
2024-10-24 13:30:23 +00:00
Grahame Grieve 89be42a649 Merge remote-tracking branch 'origin/master' 2024-10-24 07:16:05 +10:30
Grahame Grieve e6c720450b
Merge pull request #1774 from hapifhir/do-20241009-documentbuilderfactory-refactor
Move new DocumentBuilderFactory calls to XMLUtils
2024-10-24 07:14:28 +10:30
dotasek ddb0a661dd Merge branch '2024-10-gg-tx-server-auth-1' into do-20241021-tx-auth 2024-10-23 11:55:58 -04:00
Grahame Grieve 5a4f794add Merge remote-tracking branch 'origin/master' 2024-10-23 23:34:39 +10:30
Grahame Grieve d652aa2f30 Fix NPE processing markdown 2024-10-23 22:19:08 +10:30
dotasek a94e1bc2af WIP keep moving FhirRequestBuilder to ManagedWebAccess + fix some tests 2024-10-22 17:33:50 -04:00
dotasek d0bbc93c32
Add commons-lang3 to support commons-compress bump (#1784) 2024-10-18 00:38:24 -04:00
dotasek f0a25dabe3 Move XXE safe SAXParserFactory and XMLReader instantiation to XMLUtil 2024-10-17 15:46:05 -04:00
dotasek 2d80a09deb Merge remote-tracking branch 'origin/master' into do-20241009-documentbuilderfactory-refactor 2024-10-16 11:59:24 -04:00
markiantorno cabee9a341 Updating version to: 6.3.33-SNAPSHOT and incrementing test cases dependency. 2024-10-14 06:03:42 +00:00
markiantorno 54bf319161 Release: v6.3.32
## Validator Changes

* Fix validation issue with open-choice questions in R4 questionnaires
* Add command line parameter ```-tx-routing```
* Add command line parameter ```-clear-tx-cache```
* Add command line parameter ```-advisor-file```

## Other code changes

* Render extensions on some data types
* Fix rendering of complex data types when doing profile rendering
***NO_CI***
2024-10-14 05:18:21 +00:00
markiantorno a7e216e2c3 Updating version to: 6.3.32-SNAPSHOT and incrementing test cases dependency. 2024-10-10 14:35:11 +00:00
markiantorno 0388bd0835 Release: v6.3.31
## Validator Changes

* Don't send expansion to tx server if there's a compose when sending value sets
* Better handling of error messages from terminology servers
* Stop hitting VSAC server directly

## Other code changes

* Add support for $id$ in terminology tests
* Move new documentbuilderfactory calls to XMLUtils (Security)
***NO_CI***
2024-10-10 13:54:40 +00:00
Grahame Grieve c7ccbb0110 more work on http client 2024-10-10 19:29:58 +08:00
Grahame Grieve b9299fa9e2 fix typo 2024-10-09 23:14:11 +08:00
Grahame Grieve cacce9b05e fix up processing of server responses 2024-10-09 23:10:09 +08:00
dotasek 7ede053a5f Move new documentbuilderfactory calls to XMLUtils 2024-10-09 09:26:41 -04:00
markiantorno c030740d9e Updating version to: 6.3.31-SNAPSHOT and incrementing test cases dependency. 2024-10-08 15:52:36 +00:00
markiantorno ad0af19fb3 Release: v6.3.30
## Validator Changes

* Show message ids in validator (-show-message--ids)
* Fix bug where message id not showing for slicing messages
* Add advisor documentation (not yet functional)
* Fix issue checking package currency for #current packages
* Add warning when code system is marked complete but has no content
* Fix bug processing adding discriminators in derived profiles
* Break valueset concept validation into multiple smaller batches for performance reasons

## Other code changes

* More work on translations in IGs
* Override inheritance of HAPI's old maven-compiler-plugin
* do not use loadPackageFromCacheOnly from outside cache manager
* Fix issues with rendering example scenario
* refactor sql view validation to fix NPE
* Fix misc warnings flagged by builds (#1772) + TRIVY typo
* Bump codeql actions to v3
* Bump checkout action to v4
* Bump commons.io to 2.14.0 (#1771)
* Workaround for ghcr rate limiting of trivy db downloads (#1770)
* Add VSACfinder (template for package analysis)
* Fix github urls
* Spelling fixes
***NO_CI***
2024-10-08 15:04:29 +00:00
markiantorno e8a0bba072 Updating version to: 6.3.30-SNAPSHOT and incrementing test cases dependency. 2024-09-26 12:30:18 +00:00