93b0d74eb5
Add GraphDefinition engine
2020-06-17 12:23:00 +10:00
faf31afda1
fix rendering issues found in main build
2020-06-17 12:22:40 +10:00
1a4edb33a4
Fix problem with NPE rendering quantity
2020-06-14 07:08:31 +10:00
49c35b1de2
Updating version to: 5.0.8-SNAPSHOT
...
***NO_CI***
2020-06-13 13:12:37 +00:00
b2ecaa2bfa
Release: v5.0.7
...
* Override extension methods in BackboneElement to look in modifierExtensions as well as extensions
* First draft of Profile Comparison tools (org.hl7.fhir.r5.comparison)
* Improved error messages when snapshot generation fails when slicing something that doesn't repeat
* Improvements for CDA round-tripping (XML esacping issues, xsi:type related issues, namespacing issues)
* Fix bug rendering DiagnosticReports with multiple categories
* adjust check on Attachment to only be an warning (when no meaningful content exists)
* add security check mode to Validator
***NO_CI***
2020-06-13 12:51:27 +00:00
f5455bb9e9
Merge branch 'release' into merge_branch
2020-06-12 19:34:50 -04:00
c1a9d3d1e5
beef up tests for multiple dependencies in snapshot generation
2020-06-12 09:23:12 +10:00
c6d667db04
fix for profile comparison issues
2020-06-12 09:22:48 +10:00
3e55b24473
Merge pull request #237 from hapifhir/gg-work
...
override Element extension methods to also check for modifierExtensions
2020-06-11 21:58:20 +10:00
ebbee32827
Merge pull request #238 from hapifhir/gg-work-2
...
fix bug with category
2020-06-11 21:57:50 +10:00
5f1d6e193c
first release of functional Profile comparison on new framework
2020-06-11 16:40:57 +10:00
a09c4c3cea
fix NPE in IG publisher
2020-06-11 16:40:20 +10:00
3b925f219d
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work
2020-06-11 06:24:02 +10:00
ebc2a7a6ba
don't escape umlaut in elem utf8
2020-06-10 19:50:52 +02:00
8f838d164f
fix bug with category
2020-06-10 22:08:04 +10:00
5efaee2c47
add javadoc around extension mgmt
2020-06-10 12:16:54 +10:00
0c9375aa5b
fix whitespace
2020-06-10 09:47:12 +10:00
cfe386e141
clarify
2020-06-10 09:45:27 +10:00
fb9b123c65
override Element extension methods to also check for modifierExtensions
2020-06-10 09:00:51 +10:00
b01c64dc2c
Merge pull request #197 from ahdis/oliveregger_cdatitle
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Deserializing CDA ST and ED elements from JSON fix
2020-06-10 08:47:13 +10:00
4d9ace1619
Merge pull request #228 from ahdis/oliveregger_fml_xsitype
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CDA xsi:type serialization when using fhir mapping language
2020-06-10 08:45:12 +10:00
9e7ef8ab38
Merge pull request #230 from ahdis/oe_cdanarrative_npfix
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CDA Narrative conversion from FHIR, Nullpointer exception fix
2020-06-10 08:43:17 +10:00
c26b331850
more work on profile comparison
2020-06-09 17:22:37 +10:00
81ebd97599
fix bug in validator XML parser
2020-06-09 17:22:03 +10:00
31a4d31755
CDA Narrative conversion from FHIR NP fix
2020-06-08 21:51:05 +02:00
473a9aab0a
roundtrip for sdtc, add ns, xml name to serialize
2020-06-08 15:48:13 +02:00
d0ee44dfa8
json roundtrip cda title
2020-06-08 10:47:54 +02:00
5576a02378
add ed/st type definition and roundrip
2020-06-08 10:32:47 +02:00
22ec0924da
logical model not as resource (create xsi:type)
2020-06-08 10:01:09 +02:00
94467b270a
standardise terminology client across versions
2020-06-07 08:42:14 +10:00
0fb57007c4
Release v5.0.6 ( #226 )
...
* reenable test and fix recursion
* remove disabled r4 fml tests
* add conformsTo test and support for FML
* Snapshot builder fix (#223 )
* Update module-snapshot-publishing.yml for Azure Pipelines
* Changing pipeline, because intermodule depenedecies are not being read in correctly.
* Update README.md
* Fixed bad link
* Release: v5.0.6
***NO_CI***
* Updating version to: 5.0.7-SNAPSHOT
***NO_CI***
* Fixing issues and preparing for release (#225 )
* Issue #189 - improve Questionnaire error message
* fix for issue #187
* more work on comparison
* Fix for NamingSystem display
Co-authored-by: Oliver Egger <oliver.egger@ahdis.ch>
Co-authored-by: Grahame Grieve <grahameg@gmail.com>
2020-06-05 18:47:17 -04:00
0c718c7a9b
Fix for NamingSystem display
2020-06-06 07:28:58 +10:00
b2367e94b6
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work
2020-06-06 07:24:00 +10:00
60119b5f64
more work on comparison
2020-06-06 07:23:43 +10:00
eaab390aa4
Merge pull request #218 from ahdis/oliveregger_fml_conformsto
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FHIR Mapping Language support for conformsTo function
2020-06-06 07:00:23 +10:00
97b6a9fbdb
Snapshot builder fix ( #223 )
...
* Update module-snapshot-publishing.yml for Azure Pipelines
* Changing pipeline, because intermodule depenedecies are not being read in correctly.
2020-06-05 13:23:52 -04:00
e6e4515777
add conformsTo test and support for FML
2020-06-05 17:56:14 +02:00
72d250a40a
Merge remote-tracking branch 'upstream/master'
2020-06-05 17:55:01 +02:00
7975a65474
wip
2020-06-05 11:05:52 -04:00
3c296b3ff7
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work
2020-06-05 05:36:14 +10:00
9c3d678f6e
changing package cache manager to the new version used in r4 so builds pass. reverting changes to fork number in maven
2020-06-04 09:57:34 -04:00
bc4f99bed8
Merge remote-tracking branch 'upstream/master'
2020-06-04 10:29:48 +02:00
fcc18a0e39
Merge pull request #214 from hapifhir/ja_20200524_npm_rework
...
Refactor package support to remove filesystem dependency
2020-06-04 16:04:02 +10:00
f90d456ddc
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work
2020-06-04 10:37:37 +10:00
83157e689f
Improve rendering of content reference in profiles
2020-06-04 10:37:18 +10:00
7a63c0b353
wip
2020-06-03 13:33:12 -04:00
38e2afbf25
Packaging all SNAPSHOTS at once, instead of iterating through individual pom files
2020-06-03 11:19:57 -04:00
a74b604ca3
wip
2020-06-03 10:21:06 -04:00
429774afb9
Merge remote-tracking branch 'upstream/master'
2020-06-03 14:48:53 +02:00
861a0ee706
change error to warning for extension frrom different version because context might change between versions
2020-06-03 16:03:14 +10:00
14505af3b5
Fix NPE validating from unknown code system when the code is in extension
2020-06-03 09:32:52 +10:00
6534a5358b
Merge branch 'master' into ja_20200524_npm_rework
2020-06-02 18:02:51 -04:00
7ac1b1f0e0
implement new FHIRPath functions
2020-06-03 06:52:47 +10:00
08b59b89e2
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core
2020-06-03 05:06:45 +10:00
8658047c16
FHIRPath functions
2020-06-03 05:06:25 +10:00
b8a4f6ae4f
putting back in check for WINDOWS os for sdc test case. I know this isn't ideal, but this will get the tests back to a passing state, and we canmake changes with the CI running
2020-06-02 11:25:59 -04:00
f169a4315f
start working on R3 string functions
2020-06-02 18:21:27 +10:00
211ac8fc12
fix bug processing profiles for v1.4.0
2020-06-02 18:21:09 +10:00
f1d901a842
Support for rendering contained resources in IG Publisher
2020-06-02 13:52:28 +10:00
c5634c012e
Questionnaire Rendering improvements
2020-06-02 13:51:41 +10:00
a0245ca926
Release new version 5.0.6
2020-06-01 17:40:06 +10:00
a99c2cee96
Fix bad path in QuestionnaireRenderer
2020-06-01 16:53:02 +10:00
adf7daff51
fix bad path in snapshot generation tests
2020-06-01 16:52:47 +10:00
ba505a800e
Add toBase64 & fromBase64 to FHIRPath
2020-06-01 16:51:49 +10:00
17411a3659
Merge branch 'master' into ja_20200524_npm_rework
2020-05-30 12:07:17 -04:00
05ac3ebc98
Release new version 5.0.5
2020-05-30 09:55:30 +10:00
b4fc944afc
fix up CDA tests, and add support for http://hl7.org/fhir/StructureDefinition/elementdefinition-xml-name for CDA
2020-05-30 09:39:53 +10:00
4af4925657
move turtle parser + tests to Utilities
2020-05-30 09:38:48 +10:00
112b09d00d
fix bug rendering by profile
2020-05-29 17:44:36 +10:00
c4185492a5
fix bug rendering content references in profiles
2020-05-29 15:06:45 +10:00
dab9a7d4cd
fix up sdc test
2020-05-29 12:47:30 +10:00
a8176a841d
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into junit_test_issues
2020-05-28 14:16:19 -04:00
5c7e713997
Adding conditional execution for new Narrative test, removing test suite, as we don't use those anymore, they are from JUnit 4 and cause the vintage engine to kick in, which double runs some tests.
2020-05-28 13:47:10 -04:00
0f0d19cd94
Add checks for illegal constratins on elements
2020-05-28 22:55:35 +10:00
f64d5c7fd5
fix problem with rendering confusion between paths around local and base specifications
2020-05-28 14:08:30 +10:00
c7258dc7eb
fix bug constraining elements once they are sliced
2020-05-28 14:07:26 +10:00
998d1e0afc
Release new version 5.0.4
2020-05-27 11:06:30 +10:00
ccb6b067b3
Release new version 5.0.3
2020-05-26 06:15:36 +10:00
444b612805
Start reworking NPM manager
2020-05-24 15:02:37 -04:00
b828169317
Fix for Core issue #95 - recursion on profile definition
2020-05-24 08:17:19 +10:00
ad82386a9c
More questionnaire rendering improvements
2020-05-23 08:16:03 +10:00
3f4d574571
Update Liquid Implementation
2020-05-23 08:15:37 +10:00
50ea83322f
Release new version 5.0.2
2020-05-22 08:58:45 +10:00
786aa001c5
fix misleading error message + uppate for new release of tests
2020-05-22 08:17:36 +10:00
130caef348
Add support for Attachment validation + max size and max decimal places validation
2020-05-21 13:22:21 +10:00
5f1889765d
add debugging hook for convenience
2020-05-21 13:20:58 +10:00
028d1a6ce9
enhance API for external use
2020-05-20 21:43:39 +10:00
4e6c8ba232
Fix bug not handling slicing/sparse differentials correctly (both snapshot and rendering)
2020-05-20 18:52:11 +10:00
f02c9f0e09
Add questionnaire + NamingSystem rendering and fix various bugs in renderers from further testing
2020-05-20 18:50:08 +10:00
e496907985
fix compile
2020-05-19 05:43:50 +10:00
13e99bac29
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core
2020-05-19 05:40:07 +10:00
c7444745de
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core
2020-05-19 05:38:46 +10:00
80d9102aee
Add questionnaire renderer
2020-05-19 05:38:24 +10:00
5aad454764
reenable test and fix recursion
2020-05-18 14:34:02 +02:00
31db4b7666
refactor rendering code
2020-05-18 20:30:05 +10:00
e4292f6830
fix rendering of exclusions
2020-05-18 06:18:49 +10:00
38849214fc
prevent NPE in slicing rendering
2020-05-18 06:18:28 +10:00
2e5d9ff77c
Version bump to 5.0.1
2020-05-12 19:27:30 -04:00
60502b3c77
Prepare for 5.0.0 release
2020-05-12 11:33:54 -04:00
463a557402
Release new version 4.2.30
2020-05-12 11:54:28 +10:00
edea997312
Clean up license
2020-05-12 08:55:27 +10:00
14f803ea42
Just cleaning up imports
2020-05-11 13:24:23 -04:00
56b0acf73f
A bit of datatype cleanup
2020-05-11 09:01:31 -04:00
7c81ebce56
Two model fixes
2020-05-11 08:05:36 -04:00
daa58aea8f
Release new version 4.2.29
2020-05-11 17:25:24 +10:00
b43497897b
upgrade to v4.4.0, with attendant fixes
2020-05-11 17:09:14 +10:00
5f74bea327
move tests & do new release
2020-05-10 09:18:54 +10:00
d203b17c7d
update to use new secondary package server
2020-05-10 08:15:40 +10:00
2af8d94081
new release
2020-05-08 12:00:51 +10:00
eb9de04d2d
Start building conformance resource comparison code
2020-05-08 11:58:02 +10:00
48d9c21748
fix to compile
2020-05-06 12:17:08 +10:00
c5c0a8db92
Release new version 4.2.26
2020-05-06 11:16:19 +10:00
17ef340972
Release new version 4.2.25
2020-05-06 11:16:01 +10:00
37d4994c8f
start building the renderer package
2020-05-05 11:50:23 +10:00
868fbb5f95
Release new version 4.2.25
2020-05-02 10:53:58 +10:00
af6df3e798
improve rendering of concept maps with multiple targets
2020-05-02 07:57:30 +10:00
b214e99930
Release new version 4.2.24
2020-05-02 06:57:31 +10:00
d5bb555151
fix for issue #188 + fix for transition of ConceptMap enumeration
2020-05-02 06:56:29 +10:00
3a6d03fb7e
ConceptMap updates for 'source-is-narrower-than-target' (formerly 'broader') and 'source-is-broader-than-target' (formerly 'narrower') relationships
2020-04-30 22:54:47 -05:00
f8ca02d697
Release new version 4.2.23
2020-05-01 11:15:25 +10:00
c003f1fca4
Add provenance support for version conversion. + add Provenance rendering
2020-05-01 11:14:29 +10:00
bc21de6d78
fix broken test
2020-04-30 14:58:30 +10:00
89f98bb960
I cast you out unclean spirit.
2020-04-29 16:55:40 -04:00
1086a46a6c
wip
2020-04-29 14:55:47 -04:00
5893249747
fixing tests
2020-04-29 14:40:46 -04:00
368a45a150
Fix for HAPI-FHIR issue 1820
2020-04-29 14:08:36 -04:00
6110b56396
Release new version 4.2.22
2020-04-29 20:37:31 +10:00
d63e05b3cb
Fix problem evaluating "type" discriminators ending with .resolve() + fix NPE in FHIRPath parser
2020-04-29 20:34:18 +10:00
608149e494
Release new version 4.2.21
2020-04-29 14:57:18 +10:00
01a5420a68
Generate Narrative correctly for ContactDetails
2020-04-29 14:49:08 +10:00
6f3362918d
Release new version 4.2.20
2020-04-28 13:27:23 +10:00
f9bdd5c9f0
fix handling of unknown code systems
2020-04-28 10:14:23 +10:00
fdbcbacd1c
fix bug in tests
2020-04-27 14:27:25 +10:00
7e3051535d
fix error in caching
2020-04-27 14:27:07 +10:00
3d2214d9eb
fix definition title for UTG
2020-04-26 15:13:43 +10:00
c829de2f86
Merge branch 'master' into testing_updates
2020-04-24 07:20:35 +10:00
0ef4b01e90
disabled test that wasn't supposed to run yet
2020-04-23 14:51:57 -04:00
7673400a13
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into testing_updates
2020-04-23 10:51:49 -04:00
9c83540c2f
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into validator_gui
2020-04-23 10:47:00 -04:00
602e684bc6
Release new version 4.2.19
2020-04-23 21:07:04 +10:00
01e0afd72a
get mutli-languages displaying for code systems
2020-04-23 20:57:39 +10:00
4316c81f7e
reorganize generation code for terminology resources
2020-04-23 17:31:58 +10:00
8d3a0cf18e
fix problem with abstract codes not appearing in value set expansions
2020-04-23 17:29:59 +10:00
ce67dabfeb
fix problem expanding flat code systems part #2 + fix misleading error message for URI value set validation
2020-04-22 16:45:17 +10:00
4cbf328e54
support validation against code system fragments
2020-04-22 16:43:32 +10:00
4e81bb5edb
Test suites are a thing of the past.
2020-04-21 20:36:40 -04:00
a7e874501e
Tests updated to JUnit Jupiter. Various quality of life improvements.
2020-04-21 20:36:17 -04:00
175d5fa0b7
Release new version 4.2.18
2020-04-21 13:58:17 +10:00
957a71dc41
better debugging of error strings
2020-04-21 13:57:41 +10:00
e76c65e6c9
Fix problem expanding flat code systems
2020-04-21 10:00:30 +10:00
8a9bcbf6e6
reorganise to test cross-version extensions
2020-04-17 22:27:02 +10:00
ec517834b0
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core
2020-04-17 10:58:54 +10:00
4d30314a3d
Improve URL validation + fix NPE in Measure validation
2020-04-17 10:58:06 +10:00
549abaa799
more informative error message for package failure
2020-04-17 10:56:20 +10:00
b4a9765aa0
Merge pull request #172 from hapifhir/base64_fix
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Fix for NPEs in Base64BinaryType. Added tests to cover the cases.
2020-04-17 10:54:18 +10:00
82d80caec5
Allow expansions on code system fragments, with warnings when appropriate
2020-04-17 10:46:09 +10:00
d3733b3409
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into validator_gui
2020-04-16 20:28:25 -04:00
8c3e03399e
wip
2020-04-16 10:17:33 -04:00
118fe3d7e3
Restore expansion version notice capability for multiple versions of same code system.
2020-04-15 02:24:36 -05:00
55622f53cb
Fix for NPEs in Base64BinaryType. Added tests to cover the cases. Updated for all FHIR versions.
2020-04-14 22:28:32 -04:00
979bad6af1
Add support for R5 version extensions and using cross version extensions when generating narrative
2020-04-12 22:04:57 +10:00
4bd0d60e5c
Release new version 4.2.17
2020-04-12 08:25:18 +10:00
fa9c1cae1d
bug fixes for list narrative generation
2020-04-12 08:22:29 +10:00
d97e408d3c
Release new version 4.2.16
2020-04-11 20:50:39 +10:00
8431a12195
Pass too-costly note on when including value sets + Improve rendering of value set version dependencies
2020-04-11 19:28:12 +10:00
6e3af326de
minor fixes for getting tests passing
2020-04-09 11:33:41 +10:00
01de20c310
Release new version 4.2.15
2020-04-09 10:50:54 +10:00
a261ad0f75
improve error message for randon text in xml format
2020-04-09 10:28:08 +10:00
f1594bc133
beef up the Context interface to support package related tracking, and use that to manage UTG resource contention
2020-04-09 10:26:39 +10:00
35074ca0b2
fix bug in ConceptMap rendering for unmapped codes
2020-04-07 14:49:55 +10:00
0e2797827d
Merge pull request #166 from lmckenzi/IdentifyValueSetSystemWithExcludes
...
The validator currently treats value sets that contain exclude elemen…
2020-04-06 10:18:17 +10:00
5865f8da3e
Release new version 4.2.14
2020-04-06 10:12:24 +10:00
12b2011a63
fix bug in ElementModel.Element.setProperty
2020-04-05 20:33:32 +10:00
f6a5217d98
The validator currently treats value sets that contain exclude elements as ones where a code system cannot be determined. However, that's not appropriate. So long as there's only one *include* for the value set, the presence of excludes are irrelevant. For example, I have a value set that includes all specializations of code X, then explicitly excludes code X. There's only one include and only one system, so it's a perfectly appropriate value set to be bound to a 'code' extension. Stripping out the test that checks for excludes as irrelevant.
2020-04-03 23:20:33 -06:00
31f80f29f8
fix for NPE
2020-04-04 00:01:00 +11:00
6d1fe2ff1e
fix apparent bug in Base64binary
2020-04-03 23:59:15 +11:00
8d695bb4c1
Improve List rendering
2020-04-03 12:15:55 +11:00
aef4404405
Release new version 4.2.13
2020-04-02 11:07:25 +11:00
ab581fdf86
further modularise validator and add Measure Validation
2020-04-02 11:05:55 +11:00
95c2f99e7b
track libraries (prep for CQL validation)
2020-04-02 11:04:29 +11:00
bdad4d9a6b
work around issue where constraint.source is not populated properly in base packages
2020-04-02 11:03:35 +11:00
1da57be1c0
support comments in json source when configured to do so
2020-04-02 11:00:42 +11:00
9e59ce2323
Release new version 4.2.12
2020-03-31 11:21:06 +11:00
51952c26c1
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core
2020-03-31 10:16:04 +11:00
d6ee58d47a
fix bug with type at root of statement
2020-03-31 10:14:45 +11:00
232f1ff8ff
Start building support for measure validation
2020-03-31 10:14:12 +11:00
2defba63ec
Fix incorrect appending of <br/> tag causing it to be escaped.
2020-03-29 16:42:07 -05:00
afb0453e7b
Merge pull request #160 from rhausam/multiple-expansion-version-notice
...
Support listing multiple "Expansion based on" versions.
2020-03-29 16:53:11 +11:00
49a6c9d746
Support listing multiple "Expansion based on" versions.
2020-03-28 20:37:56 -05:00
5d9f1d734a
Full disclosure: this isn't really a 'bug' per say, it's more of a best practice thing. The only reason I'm making this change is because I'm working on a parser in my spare time that will most likely never see the light of day, and these accessors are causing me problems because both the line and column fields are private and need to be accessed through the appropriate accessor.
2020-03-28 16:48:37 -04:00
092a694a3f
Release new version 4.2.11
2020-03-28 06:52:41 +11:00
6baf62eca2
Release new version 4.2.12
2020-03-28 06:50:41 +11:00
60cba0c52c
* fix internal exception with missing type in R3 + add missing short definitions from differential format
2020-03-28 06:17:01 +11:00
9a55346de5
fix for parsing nulls when validating
2020-03-28 06:13:31 +11:00
239331ef76
improve parsing error message when parsing json
2020-03-28 06:09:37 +11:00
4f873ebe8b
fix tests
2020-03-20 05:42:13 +11:00
427d8ef0ab
Fix bug picking correct slice on fixed value
2020-03-20 05:23:55 +11:00
1ad12a4396
Fix bug in testing with multiple contexts for the same version
2020-03-20 05:23:29 +11:00
af97232036
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core
2020-03-19 06:23:13 +11:00
a7cf428fef
Validate XML header and syntax issues
2020-03-19 06:17:03 +11:00
Grahame Grieve
markiantorno
Oliver Egger
jamesagnew
Rob Hausam
Lloyd McKenzie