5fef79c08d
Update Validator -version handling, and improve tx server error handling
2022-04-20 11:17:40 +10:00
a7354f999e
Dotasek oe r4r5structuremapconversion ( #775 )
...
* Fix exception R5 to R4 of StructureMap #771
* Fix typo
* Enhance conversion from r5 to r4 + add failing test for r4 to r5
* WIP Convert R4 variable to R5 parameter and try to get correct dataType
* Clean up rough-work test
* Move static methods to FHIRPathConstant class
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-04-13 18:22:58 -04:00
9928efa0d1
align additional bindings with extension definition
2022-04-13 18:07:57 +10:00
6328230f9f
Updating version to: 5.6.42-SNAPSHOT and incrementing test cases dependency.
2022-04-12 04:03:54 +00:00
8785babf24
Release: v5.6.41
...
## Validator Changes
* Handle reslicing within the same profile
* Fix up wrong handling of context on exists() in FHIRPath
* Add hints to profiles around behavior of pattern on repeating elements
* Ignore all tooling extensions when validating
* support specifying an alternative version when loading source using -ig parameter
* Don't validate Bundle.entry.fullUrl as a reference to some other content
## Other code changes
* Improved output for unit test comparisons
* Fix conversion issues around Base64Binary
* Fix for R4/R5 DataRequirements conversion for DeviceUsage
* Add AdditionalBindings Rendering (draft)
* Display all designations when rendering ValueSets
* Fix bug where expansions have empty objects some times
* Fix R4B Snapshot generation
* Enable Linking to fragment CodeSystems
***NO_CI***
2022-04-12 03:31:27 +00:00
6f3fe23f49
refactor additional bindings
2022-04-12 13:11:42 +10:00
b9902833c5
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir
2022-04-12 09:12:35 +10:00
d73881df55
Add Get canonical URL names
2022-04-12 09:11:39 +10:00
c3281340a0
Add Additional Bindings rendering
2022-04-12 09:11:18 +10:00
9385557e04
Merge pull request #783 from gabriel0316/allowOtherDesignations
...
Allow other designations
2022-04-12 09:08:52 +10:00
fcbc13cb9c
Merge pull request #784 from gabriel0316/displayDesignations
...
Display all designations
2022-04-12 09:08:16 +10:00
a8da416ee3
Fix xml test + add unit tests
2022-04-11 14:57:10 -04:00
2181cb14d5
Change tests to xml + fix breaking test
2022-04-11 14:10:53 -04:00
2fb5c67e32
Display all designations
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With this commit all designations (incl. languages) will be displayed
in the Logical Definition and the Expansion of a ValueSet.
2022-04-08 13:39:09 +02:00
cdef76bc6d
Fix bug where expansions have empty onbjects
2022-04-07 00:20:11 +10:00
51cd908f20
Allow other designations
...
With returning the url it is possible to allow other
designation.use than only the two specified
SNOMED codes.
2022-04-06 16:09:09 +02:00
76411218ac
Merge pull request #782 from hapifhir/gg-202204-various
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various fixes
2022-04-06 09:28:09 +10:00
03bb7d4f5e
Merge pull request #781 from gabriel0316/fixCodeSystemLink
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Enable linking to fragment CodeSystems
2022-04-05 15:55:45 +10:00
8a05e4b2b2
various fixes
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* Handle reslicing within the same profile
* Fix up wrong handling of context on exists() in FHIRPath
* Add hints to profiles around behavior of pattern on repeating elements
* Ignore all tooling extensions when validating
2022-04-05 15:52:33 +10:00
c6fcf165e9
Enable linking to fragment CodeSystems
2022-04-04 15:47:29 +02:00
880039c78b
Reorganize TestingUtilities to use expected/actual convention from JUnit ( #780 )
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* Make testing utilities conform to JUnit expected-actual convention
* Refactor to CompareUtilities
* Add tests for CompareUtilities
* RELEASE_NOTES
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-04-04 09:44:04 -04:00
87fed0cfc8
Updating version to: 5.6.41-SNAPSHOT and incrementing test cases dependency.
2022-03-30 23:21:31 +00:00
f80a28816c
Release: v5.6.40
...
## Validator Changes
* Add further clarification to Value set imports warning message
## Other code changes
* Consistent use of string values for primitive type conversions
* Fix problem with generated NPM Packages
* Fix URls when processing markdown while generating snapshots
* Default output to console, with additional output available via -debug option in CLI.
* Bump jackson-databind version to fix security vulnerability.
***NO_CI***
2022-03-30 23:05:39 +00:00
7c8f5a3d8b
Merge pull request #779 from hapifhir/gg-202203-urls
...
Gg 202203 urls
2022-03-31 09:34:47 +11:00
d2ebb37e9b
Fix problem with generated NPM packages
2022-03-31 07:17:00 +11:00
610a7067a1
fix URLs processing in markdown
2022-03-31 07:12:44 +11:00
0b5f1dd351
Merge pull request #777 from hapifhir/dotasek-add-terminology-to-testingutilities
...
Add hl7.terminology to shared worker contexts in tests
2022-03-29 19:07:59 -04:00
759ba33bdd
Remove v3-NullFlavor from invalid urls
2022-03-29 16:35:26 -04:00
927bdffd2e
Add hl7.terminology to shared worker contexts in tests
2022-03-29 10:23:54 -04:00
4237554d2c
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir
2022-03-29 11:17:14 +11:00
4735d99114
stability fixes
2022-03-29 11:17:01 +11:00
86b714bb7b
Pass -debug param to default logger + add logger to context builders
2022-03-25 13:38:24 -04:00
35f5b96eb7
Use SystemOutLoggingService for logging
2022-03-24 17:33:27 -04:00
25d9439fa9
Fix null exception for debug messages in BaseWorkerContext
2022-03-23 14:11:26 -04:00
6e45dd522e
Merge remote-tracking branch 'origin/master' into dotasek-primitivetype-conversion-via-stringvalue
2022-03-18 14:09:12 -04:00
b075c5695f
Updating version to: 5.6.40-SNAPSHOT and incrementing test cases dependency.
2022-03-18 04:05:44 +00:00
e053d5a260
Release: v5.6.39
...
## Validator Changes
* no changes
* Add messageid to OperationOutcome from Validation
* Add support for new rules around value set interpretation with multiple imported value sets (https://jira.hl7.org/browse/FHIR-25179 )
## Other code changes
* Fix for FHIRPathEngine.funcReplaceMatches() incorrectly returning Boolean in DSTU2 & DSTU3
* Fix NPE Processing missing markdown in definitions when generating snapshots
* add support for .matchesFull() and fix .matches() in FHIRPath
* Fix core package identification when loading new R5 core packages
***NO_CI***
2022-03-18 03:46:59 +00:00
48d87a2075
Merge branch 'master' into gg-202203-misc
2022-03-18 12:54:53 +11:00
cf95c1a2ba
Fix for Jira 25179 - change handling of imports
...
See https://chat.fhir.org/#narrow/stream/179202-terminology/topic/ValueSet.20defined.20by.20an.20intersection.20.3F
2022-03-18 12:45:40 +11:00
d0feacaaa8
Add tests and changes for Decimal
2022-03-17 15:41:07 -04:00
b5b43836eb
Add tests and changes for Base64Binary
2022-03-16 12:20:58 -04:00
9903d15ecc
Add tests for setValueAsString and contructor precision checking
2022-03-15 17:47:23 -04:00
def7d5566a
Surface message id in OperationOutcome from validator
2022-03-16 08:30:44 +11:00
5ae5e5d4c8
fix PatientRenderer
2022-03-16 08:30:25 +11:00
535a9cd9c9
fix FHIRPath matches() issue, and add support for matchesFull
2022-03-16 08:30:02 +11:00
dc84f94a17
fix NPE processing markdown
2022-03-16 08:29:19 +11:00
209a5e777b
Merge remote-tracking branch 'origin/master' into dotasek-primitivetype-conversion-via-stringvalue
2022-03-15 12:36:09 -04:00
4068db73ff
WIP Add tests for Primitive Types + use getValueAsString for conversion
2022-03-15 12:35:50 -04:00
8f5db15937
Updating version to: 5.6.39-SNAPSHOT and incrementing test cases dependency.
2022-03-14 21:48:39 +00:00
9ad69aca53
Release: v5.6.38
...
## Validator Changes
* no changes
## Other code changes
* Fix for FHIRPathEngine.funcReplaceMatches() incorrectly returning Boolean in DSTU2 & DSTU3
***NO_CI***
2022-03-14 21:32:32 +00:00
79d6c7034d
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir
2022-03-15 06:45:18 +11:00
e8e6337b7c
preserve message id in operation outcome
2022-03-15 06:44:10 +11:00
4c82c9c738
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into Branch_685ea98d
2022-03-11 11:21:55 -07:00
a6faece71b
Added R4B releases to the R4<->R5 conversion process
...
Corrected release number for R4B to be 4.3xxx rather than 4.1xxx
2022-03-11 11:16:04 -07:00
e4ce145a0b
Updating version to: 5.6.38-SNAPSHOT and incrementing test cases dependency.
2022-03-11 03:21:07 +00:00
e86c9afc7a
Release: v5.6.37
...
## Validator Changes
* fix handling of xver extensions with choice sub-extensions
* validate consistency of extension modifier flag with extension use in a profile
## Other code changes
* more presenting extensions when rendering.
* Get package id from 'package' field when 'npm-package' unavailable
* Ignore META-INF contents from other dependencies while building Validator jar
* Fix to r5 TestingUtilities to allow NarrativeGenerationTests to pass.
* fix handling to xver extensions generating snapshots
***NO_CI***
2022-03-11 03:04:43 +00:00
d23c319a90
Merge branch 'master' into gg-202203-vs-system
2022-03-11 11:30:07 +11:00
a3e8fca51a
Merge pull request #759 from hapifhir/R4B-datatypes-and-xml-cleanup
...
R4 b datatypes and xml cleanup
2022-03-11 10:53:52 +11:00
0b3ccbbe37
Reverted lower-casing of version comparison
2022-03-10 16:48:41 -07:00
6b3d7d4eaa
infer system when value set has includes
2022-03-11 10:37:10 +11:00
56c52ab7dd
make fhir version code case independent
2022-03-11 10:34:18 +11:00
791f16a05d
fix failing tests.
2022-03-10 11:18:03 +11:00
33f6c57d48
fix NPE
2022-03-10 06:52:44 +11:00
89b912dde2
Fix cross version extension validation, and check that extensions are consistent wrt isModifier in profiles
2022-03-09 17:37:26 +11:00
d7754a321f
Fix snapshot generation - always populate constraint source properly
2022-03-09 17:36:39 +11:00
2ff53e9bf1
merge
...
# Conflicts:
# RELEASE_NOTES.md
2022-03-08 13:25:16 +11:00
478663cdf8
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into R4B-datatypes-and-xml-cleanup
2022-03-07 19:20:19 -07:00
cc983073cd
more cross version extensions
2022-03-08 13:19:19 +11:00
32c2ad96b7
Merge pull request #755 from hapifhir/gg-202203-extensions
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Gg 202203 extensions
2022-03-08 09:39:54 +11:00
074da98066
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into R4B-datatypes-and-xml-cleanup
...
# Conflicts:
# org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/model/Enumerations.java
2022-03-04 22:01:48 -07:00
9f01f7c9f2
Per FHIR-31722 and FHIR-34453, ensure that CodeableReference and RatioRange aren't allowed in extensions Parameters, etc. in R4B
2022-03-04 21:58:17 -07:00
ca91cfad1a
When running in Eclipse, the version comes in as upper-case, and the enum comparison needs it to be lower-case, so fold it to be that way.
2022-03-04 21:56:27 -07:00
6f57013f98
Fix intermittent failures in NarrativeGenerationTests
2022-03-03 16:19:39 -05:00
38e84a46f2
Merge pull request #750 from cqframework/master
...
Fix include resolution in LiquidRenderer
2022-03-03 07:46:12 +11:00
64aed90f1e
fix handling of xver extensions with choice sub-extensions
2022-03-03 07:43:43 +11:00
4f652bceee
more presenting extensions when rendering.
2022-03-03 07:43:09 +11:00
862c8de664
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir
2022-03-01 11:38:53 +11:00
4909286a4b
Updating version to: 5.6.37-SNAPSHOT and incrementing test cases dependency.
2022-02-26 05:00:46 +00:00
17bf21ecf8
Release: v5.6.36
...
## Validator Changes
* No changes
## Other code changes
* fix expansions where inactive = false (was wrongly including inactive codes)
***NO_CI***
2022-02-26 04:42:17 +00:00
23fe900624
Merge branch 'gg-202202-various' of https://github.com/hapifhir/org.hl7.fhir
2022-02-26 08:09:27 +11:00
df89ca1df3
remdering work
2022-02-26 08:09:15 +11:00
6975397675
Fix breaking SimpleWorkerContextTests
2022-02-25 15:36:04 -05:00
a5060d9475
fix failing JUnit test
2022-02-26 06:42:43 +11:00
c918f724ee
fix problem missing profiles on references in discriminators
2022-02-26 06:22:42 +11:00
f32895da67
Fix ValueSet presentation
2022-02-26 06:21:14 +11:00
c5b3e022a4
fix bug where inactive codes always put in expansions, and add unit tests for this
2022-02-25 13:07:07 +11:00
778738d3ac
Fix constructor argument
2022-02-23 20:20:38 -07:00
8212604250
Fix missing argument
2022-02-23 20:09:17 -07:00
5544460d20
Added documentation
2022-02-23 19:44:21 -07:00
ab329c8c63
Added a Liquid template resolver to narrative generation to support include resolution in the publisher
2022-02-21 15:05:42 -07:00
9e693b6a03
Updating version to: 5.6.36-SNAPSHOT and incrementing test cases dependency.
2022-02-19 22:00:05 +00:00
685ea98d37
Release: v5.6.35
...
## Validator Changes
* no changes
## Other code changes
* fix various rendering issues from core spec
***NO_CI***
2022-02-19 21:28:34 +00:00
905f8a7197
Merge pull request #746 from lmckenzi/Suppress-ignoring-ignore-messages
...
When you have a dependency on the R4 examples package, you get 100s o…
2022-02-20 08:00:04 +11:00
98ba40748e
Follow content reference when rendering XML resources
2022-02-19 21:46:05 +11:00
a1912cd423
fix various rendering issues from core spec
2022-02-19 21:41:50 +11:00
4d26ca64fb
When you have a dependency on the R4 examples package, you get 100s of messages about every value set, profile, etc. that's being ignored. Changed this so it's only a debug log message rather than something that happens all the time.
2022-02-16 23:17:09 -07:00
c9b6ab4e64
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir
2022-02-17 02:07:00 +11:00
84f7133cf1
remove debugging statements
2022-02-17 02:05:02 +11:00
73baca035e
Updating version to: 5.6.35-SNAPSHOT and incrementing test cases dependency.
2022-02-16 05:52:52 +00:00
edd2c43e64
Release: v5.6.34
...
## Validator Changes
* Improve code validation error when value set can't be supported on tx.fhir.org
* Hide error about regex in core package
## Other code changes
* Fix wrong URL links in processed markdown
* Don't let txCache errors stop the process
* Fix broken links in questionnaire +
***NO_CI***
2022-02-16 05:32:34 +00:00
db19b0dd00
Fix broken links + remove error about regex in core package
2022-02-16 14:04:35 +11:00
647d3efcee
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir
2022-02-16 13:15:19 +11:00
0f1d9db24f
Fix wrong URL links + txCache errors + questionnaire rendering at root
2022-02-16 13:14:55 +11:00
1d02e04edd
Updating version to: 5.6.34-SNAPSHOT and incrementing test cases dependency.
2022-02-15 11:21:29 +00:00
fd36a5b0d2
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir
2022-02-15 22:17:36 +11:00
c13193835e
Preserve code validation error
2022-02-15 22:17:08 +11:00
cf7415b33e
Release: v5.6.33
...
## Validator Changes
* no changes
## Other code changes
* Fix error access experimental on canonical
***NO_CI***
2022-02-15 11:00:55 +00:00
4983b0122c
Fix error accessing experimental on NamingSystem
2022-02-15 19:32:04 +11:00
e1613a7087
Updating version to: 5.6.33-SNAPSHOT and incrementing test cases dependency.
2022-02-14 06:57:10 +00:00
4a8aeda4e9
Release: v5.6.32
...
## Validator Changes
* no changes
## Other code changes
* Fix NPE error in Patient renderer
***NO_CI***
2022-02-14 06:25:49 +00:00
d91f6a450b
Fix Patient Renderer
2022-02-14 16:23:22 +11:00
4ab3fea400
Updating version to: 5.6.32-SNAPSHOT and incrementing test cases dependency.
2022-02-14 01:27:51 +00:00
04bb17783e
Release: v5.6.31
...
## Validator Changes
* accept regex on ElementDefinition and ElementDefinition.type, and an error for regex on ElementDefintion.type (though core packages have it on the wrong place)
* fix handling of cross-version extensions on choice elements
* fix OID validation (accept 1.3.88 GTIN OID)
* only consider bindable types when checking for multi-type bindings
## Other code changes
* Fix definitions in ListResource ("List" not "ListResource")
* introduce fhir-tools-settings.conf (see https://confluence.hl7.org/display/FHIR/Using+fhir-tool-settings.conf )
* Rendering fixes & improvements for Questionnaire and Patient and partial dates
* improvements to relative link handling in markdown when generating snapshots
* updates to package tools for changes to package.json#type (see https://confluence.hl7.org/pages/viewpage.action?pageId=35718629#NPMPackageSpecification-Packagemanifest )
* fix semver handling for tags in versions
* Bump mockito and bytebuddy versions for Java 17 compatibility & fix Kotlin ref
***NO_CI***
2022-02-14 01:08:37 +00:00
6310b1158e
#722 fix ListResource name misuse
2022-02-13 08:29:01 +11:00
b861ca4744
clean up
2022-02-12 09:07:07 +11:00
7700a0cb11
missed rendering fix
2022-02-12 08:29:00 +11:00
e4d886dfec
Fix handling of cross version extensions on choice types
2022-02-12 08:27:56 +11:00
fb1a08dca8
Rendering improvements: partial dates, questionnaire links, and patient renderer
2022-02-12 08:27:29 +11:00
76ed4abba7
Changes for debugging on OSX (fhir-tools-settings.conf)
2022-02-12 07:55:59 +11:00
0fa757b426
Fix markdown relative link issues + start working on additional bindings extension
2022-02-12 07:53:23 +11:00
b49e791cd1
Updates for changes to package.json type
2022-02-11 09:36:47 +11:00
045299ae7a
Updating version to: 5.6.31-SNAPSHOT and incrementing test cases dependency.
2022-02-07 15:56:51 +00:00
7ee476a9b6
Release: v5.6.30
...
## Validator Changes
* no changes
## Other code changes
* Use builders for SimpleWorkerContext and ValidationEngine to enforce initialization order for caches and capabilities
***NO_CI***
2022-02-07 15:07:54 +00:00
0e3e410ea1
Merge branch 'master' into simpleworkercontextbuilder
2022-02-04 09:50:42 -05:00
703f907289
Updating version to: 5.6.30-SNAPSHOT and incrementing test cases dependency.
2022-02-03 23:15:06 +00:00
9a89045bac
Release: v5.6.29
...
## Validator Changes
* no changes
## Other code changes
* Fix package location for CacheVerificationLogger
***NO_CI***
2022-02-03 22:42:27 +00:00
e0bdbda5b7
Fix package location for CacheVerificationLogger
2022-02-03 16:35:26 -05:00
239c436ca5
Code cleanup
2022-02-02 10:07:13 -05:00
847ede5f88
Refactor SimpleWorkerContext and ValidationEngine
2022-02-01 15:28:19 -05:00
5092be9a1d
Clean txCache + update CacheVerificationLogger output
2022-02-01 10:09:23 -05:00
c41fcf9fa9
Updating version to: 5.6.29-SNAPSHOT and incrementing test cases dependency.
2022-02-01 02:57:54 +00:00
fe073b6a8a
Release: v5.6.28
...
## Validator Changes
* no changes
* Add ability to [compile a map file to a StructureDefinition](https://confluence.hl7.org/display/FHIR/Using+the+FHIR+Mapping+Language#UsingtheFHIRMappingLanguage-runtransformsjavavalidator )
* Add knowledge of additional R5 extensions for StructureDefinitions
* Fix problem validating extension context on choice types
* Add hint when binding found on element with multiple types
* Fix validator to guess system on all uses of code (not just most)
## Other code changes
* Use cached terminology server responses for unit and integration tests.
* Add more HTTP logging
* Clean up various issues with graphQL and polymorphic elements
* Add better support for date/time rendering
* Significant speed improvement for terminology caching
***NO_CI***
2022-02-01 02:36:54 +00:00
96538ba249
Merge pull request #704 from lmckenzi/Add_map_compile
...
Add map compile
2022-02-01 11:50:41 +11:00
cae92c8621
Merge pull request #727 from hapifhir/ja_20220130_graphql_cleanup
...
Updates to GraphQL
2022-02-01 11:49:10 +11:00
bac81752c8
merge and fix testing bugs
2022-02-01 10:20:56 +11:00
4c48d597a6
Merge pull request #721 from dotasek/tx-server-cache-analysis
...
TX Server Caching for Tests
2022-02-01 08:09:41 +11:00
180035d306
One more tweak
2022-01-30 18:37:22 -05:00
846866472b
Updates to GraphQL
2022-01-30 17:04:10 -05:00
1aa1e288ec
merge
2022-01-30 07:57:39 +11:00
3559bd6638
fix tests problems with date formats and java versions
2022-01-29 09:16:48 +11:00
7b24e9d4ee
Update FHIRPathEngine.java
...
As mentioned on https://github.com/hapifhir/org.hl7.fhir.core/issues/703
2022-01-28 20:44:39 +01:00
bd9d486846
Significant speed improvement for terminology cache
2022-01-29 06:06:20 +11:00
42f75dfee0
#703 - fix missing .guessSystem() in opMemberOf
2022-01-29 06:05:51 +11:00
fdc6e02b49
Don't log requests when rebuilding cache
2022-01-26 09:31:58 -05:00
39e30a10c4
Clean up comments
2022-01-26 09:28:19 -05:00
a41287a74d
Additional logging for requests in test
2022-01-25 18:02:16 -05:00
9ec63bc1b9
Test capability caching.
...
Just when I think I'm done...
2022-01-25 16:36:13 -05:00
7c58619528
Testing Part 7
2022-01-25 14:43:13 -05:00
38728f2c82
Testing part 6
2022-01-25 10:48:42 -05:00
b5e9a7aa1e
Testing Part 5
2022-01-24 18:16:10 -05:00
Grahame Grieve
dotasek
markiantorno
Grahame Grieve
Grahame Grieve
dotasek
Gabriel
Lloyd McKenzie
Bryn Rhodes
jamesagnew
Jens Kristian Villadsen