Commit Graph

2562 Commits

Author SHA1 Message Date
markiantorno c030740d9e Updating version to: 6.3.31-SNAPSHOT and incrementing test cases dependency. 2024-10-08 15:52:36 +00:00
markiantorno ad0af19fb3 Release: v6.3.30
## Validator Changes

* Show message ids in validator (-show-message--ids)
* Fix bug where message id not showing for slicing messages
* Add advisor documentation (not yet functional)
* Fix issue checking package currency for #current packages
* Add warning when code system is marked complete but has no content
* Fix bug processing adding discriminators in derived profiles
* Break valueset concept validation into multiple smaller batches for performance reasons

## Other code changes

* More work on translations in IGs
* Override inheritance of HAPI's old maven-compiler-plugin
* do not use loadPackageFromCacheOnly from outside cache manager
* Fix issues with rendering example scenario
* refactor sql view validation to fix NPE
* Fix misc warnings flagged by builds (#1772) + TRIVY typo
* Bump codeql actions to v3
* Bump checkout action to v4
* Bump commons.io to 2.14.0 (#1771)
* Workaround for ghcr rate limiting of trivy db downloads (#1770)
* Add VSACfinder (template for package analysis)
* Fix github urls
* Spelling fixes
***NO_CI***
2024-10-08 15:04:29 +00:00
Grahame Grieve c15968c0ad add missing release notes 2024-10-08 17:46:11 +08:00
Grahame Grieve bfe4fdd572 release notes 2024-10-08 17:39:33 +08:00
Grahame Grieve eb149f5abd fix missed file 2024-10-08 05:53:31 +08:00
dotasek 6439a2a732
Fix misc warnings flagged by builds (#1772) 2024-10-07 17:16:21 -04:00
Grahame Grieve 4a1aa461a9 fix text 2024-10-05 11:55:21 +08:00
Grahame Grieve cbb645b9e0 show message ids in validator + advisor documentation 2024-10-05 11:52:07 +08:00
Grahame Grieve 4241fc9d7f fix bug where message id not showing for slicing messages 2024-10-05 11:51:11 +08:00
Grahame Grieve 837aa319c0 do not use loadPackageFromCacheOnly from outside cache manager 2024-10-05 06:41:33 +08:00
Grahame Grieve 43b85c8108 Add warning when code system is marked complete but has no content 2024-10-05 06:40:05 +08:00
Grahame Grieve 6888355c84 compile fixes 2024-09-30 17:23:56 +08:00
Grahame Grieve 6890349be2 spelling fixes 2024-09-30 08:33:02 +10:00
Grahame Grieve ef6a398ebe Break valueset concept validation into multiple smaller batches for performance reasons 2024-09-30 08:32:49 +10:00
markiantorno e8a0bba072 Updating version to: 6.3.30-SNAPSHOT and incrementing test cases dependency. 2024-09-26 12:30:18 +00:00
markiantorno 53ec745184 Release: v6.3.29
## Validator Changes

* remove spurious logging statement

## Other code changes

* no changes
***NO_CI***
2024-09-26 11:44:41 +00:00
markiantorno 8358354d2f Updating version to: 6.3.29-SNAPSHOT and incrementing test cases dependency. 2024-09-25 21:46:09 +00:00
markiantorno 569fe4b697 Release: v6.3.28
## Validator Changes

* Validator supports R6 from now on (using last stable release)
* Set default language to tag not display
* Handle tx server issues better
* Do not use server piecemeal when validating complex value sets
* Add support for -txCache parameter

## Other code changes

* Add support for R6 to R4 version enumeration
* Fix SCT link to include version and point to the right place
* Add response time to tx log
* Allow for code to turn off use of cache-id on tx interface (for debugging)
* Support n/a for tx cache folder
* Update tx cache for tests
* Add more logging for too costly validation
* Fix xml annotation suppression
***NO_CI***
2024-09-25 21:01:00 +00:00
Grahame Grieve 6289638833 fix npe in test cases 2024-09-25 05:16:02 -04:00
Grahame Grieve 004d367340 fix tests 2024-09-24 22:27:50 -04:00
Grahame Grieve ea04d9a96b update tx cache for tests 2024-09-24 20:43:14 -04:00
Grahame Grieve f4096319a3 Add support for -txCache parameter 2024-09-24 20:42:48 -04:00
Grahame Grieve b37073592b set default language to tag not display 2024-09-23 09:12:17 -04:00
markiantorno be8944ab94 Updating version to: 6.3.28-SNAPSHOT and incrementing test cases dependency. 2024-09-22 18:36:30 +00:00
markiantorno 102e755283 Release: v6.3.27
## Validator Changes

* Work around problem with language value set being marked experimental
* Fix validation id/idref to resolve in document if in a document
* Fix various issues rendering and validating additional bindings with usage contexts
* Upgrade lock management in Package Cache

## Other code changes

* Fix case typo on Consent.provision in R4
* Fix R3 Quantity.copyValues()
* Remove debugging code
* Add more debugging to validation failure
* Add support for active only to VSAC importer
* Add r4b support to Package Version Generation
* Fix argument confusion in format in time validation
* Added support for tracking whether elements are ellipsed and for rendering accordingly
***NO_CI***
2024-09-22 17:51:33 +00:00
Grahame Grieve 7bafd6e3c8 remove debugging code 2024-09-22 06:40:27 -04:00
Grahame Grieve 3cec189333 Fix id/idref to resolve in document if in a document 2024-09-22 06:40:15 -04:00
Grahame Grieve 8cfcbf389e Fix various issues rendering and validating additional bindings with usage contexts 2024-09-21 00:35:01 -04:00
markiantorno f3bd5b9be8 Updating version to: 6.3.27-SNAPSHOT and incrementing test cases dependency. 2024-09-17 22:00:24 +00:00
markiantorno 46affee48f Release: v6.3.26
## Validator Changes

* Validate of experimental property on bindings
* Add -no-experimental-content flag
* Allow JSON named extensions to be structure types other than logical
* Process relative URLs properly in base when generating snapshots

## Other code changes

* Fix rendering path for value set references for kindling
* refactor error handling in ProfileUtilities
* Fix for NPE processing packages
***NO_CI***
2024-09-17 21:09:53 +00:00
Grahame Grieve fbfd81532d Merge remote-tracking branch 'origin/master' 2024-09-17 16:18:15 +08:00
Grahame Grieve 11efed6635 Validation of experimental property 2024-09-17 16:16:09 +08:00
Grahame Grieve 76c6bb6c44
Merge pull request #1741 from hapifhir/do-20240910-remove-cqframework-dependency
Remove cqlframework dependencies
2024-09-12 07:12:04 +08:00
markiantorno 4af3deff26 Updating version to: 6.3.26-SNAPSHOT and incrementing test cases dependency. 2024-09-11 18:28:22 +00:00
markiantorno f09bc48f7d Release: v6.3.25
## Validator Changes

* no changes

## Other code changes

* Fix logic for cache clearing on package cache initialization
***NO_CI***
2024-09-11 17:40:08 +00:00
dotasek 44464de807 Remove cqlframework dependencies 2024-09-10 09:38:33 -04:00
markiantorno 2c8122a42e Updating version to: 6.3.25-SNAPSHOT and incrementing test cases dependency. 2024-09-09 19:09:24 +00:00
markiantorno 813f8200a2 Release: v6.3.24
## Validator Changes

* Fix expression for con-3 properly (fix validation problem on some condition resources)
* Fix FHIRPath bug using wrong type on simple elements when checking FHIRPath types
* FHIRPath: Allow _ in constant names (per FHIRPath spec)
* Fix value set rendering creating wrong references
* Fix bug processing value set includes / excludes that are just value sets (no system value)
* Alter processing of unknown code systems per discussion at ,https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Don't.20error.20when.20you.20can't.20find.20code.20system and implement unknown-codesystems-cause-errors
* Improve message for when elements are out of order in profile differentials

## Other code changes

* fix problem where profile rendering had spurious 'slices for' nodes everywhere
* Update SQL-On-FHIR implementation for latest cases, and clone test cases to general test care repository
* Fix problem generating value set spreadsheets
* fix concurrent modification error processing language translations
* Check for null fetcher processing ConceptMaps (#1728)
***NO_CI***
2024-09-09 18:23:37 +00:00
Grahame Grieve ffe0ab6414
2024 09 gg vs sql (#1738)
* Fix bug processing value set includes / excludes that are just value sets (no system value)

* fix value set rendering creating wrong references

* Update SQL-On-FHIR implementation for latest cases, and clone test cases to general test care repository

* Fix expression for con-3 properly (fix validation problem on some condition resources)

* FHIRPath: Allow _ in constant names (per FHIRPath spec)

* Fix FHIRPath bug using wrong type on simple elements when checking FHIRPath types

* release notes

* fix sql-on-fhir tests

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
2024-09-09 12:27:08 -04:00
Grahame Grieve 7fc34e509a alter processing of unknown code systems per discussion at ,https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Don't.20error.20when.20you.20can't.20find.20code.20system and implement unknown-codesystems-cause-errors 2024-09-06 22:18:01 +08:00
dotasek c260bece21
Check for null fetcher (#1728) 2024-08-30 09:44:33 -04:00
markiantorno 19c8b17575 Updating version to: 6.3.24-SNAPSHOT and incrementing test cases dependency. 2024-08-28 18:45:30 +00:00
markiantorno 2721ebb8c6 Release: v6.3.23
## Validator Changes

* no changes

## Other code changes

* Set fhir-test-cases to release 1.5.20
***NO_CI***
2024-08-28 17:59:21 +00:00
markiantorno 1e5cb4da49 Updating version to: 6.3.23-SNAPSHOT and incrementing test cases dependency. 2024-08-27 21:23:55 +00:00
markiantorno 0bdba83faf Release: v6.3.22
## Validator Changes

* no changes

## Other code changes

* BugFix: Restore loadFromFolder method in FilesystemPackageCacheManager
***NO_CI***
2024-08-27 20:30:39 +00:00
markiantorno c172df802d Updating version to: 6.3.22-SNAPSHOT and incrementing test cases dependency. 2024-08-27 17:54:17 +00:00
markiantorno c92ee550c0 Release: v6.3.21
## Validator Changes

* Security Fix: Move all instantiation of transformerFactory to XMLUtils and set ACCESS_EXTERNAL flags automatically (slightly improvement to output message, but closes possible attack vector)
* Handle 308 redirects when fetching packages
* Fix NPE in ValueSetValidator
* Fix for NPE in IGLoader
* fix version conversion problem for ConceptMap (4<->5): relationship comment getting lost for noMap entries
* Add check for multiple WG extensions (HL7 context)

## Other code changes

* Suppress spurious logging statement
* Add Australian CDA name prefix & uri to mapping transform code
* Add new messages for tx.fhir.org
* Remove narrative from snapshot tests
* Improve complex extension rendering when rendering by profile
* Rewrite processing of map statements when generating snapshots to fix known bugs
* Updates to Capability Statement rendering (and minor Operation Definition rendering improvement)
* Fix wrong reference to CDA classes for unscoped class names
* fix rendering issue for R4 relationship codes in ConceptMap
* rework decimal lowBoundary() and highBoundary() after discussion on Zulip, and add extensive testing
* Fix existing test case for fixed up boundary handling in FHIRPath
* Add CodeSystem fetching for selected code systems for VSAC import
* Drop to saxon 11.6 for now
* fix issue with json unicode whitespace enscaping
* get Java generator running again (though no code regenerated)
* don't escape unicode whitespace in json files
* Fix NPE in questionnaire renderer
* Hack workaround for R4 issue with ProcessPriority
* Rewrite concurrency management for file system package cache
***NO_CI***
2024-08-27 16:42:13 +00:00
dotasek 18ff00fcc3
Package Cache Concurrency (#1715)
* WIP on do-20240722-thread-safety

* Try lock downgrading for better performance

* Refactor FilesystemPackageCacheLockManager

* Tidy up spacing.

* Refactor initCacheFolder. Change read lock to stop asking for a write lock

* Clean up version in addPackageToCache

Since we run checkValidVersionString, version will never be null, and can be final. Also, everything else can be final.

* Make an even crash-ier test for the FilesystemPackageManager

* Move read lock starting point to beginning of addPackageToCache

* Code cleanup

* More code cleanup + enhanced test + more locks

* More aggressive testing + bug fixes and lock file creation

* Basic checks and creation for lockfile

* More testing + smarter check for lock file

* Some renaming and code cleanup

* Some more general tests

* Check whole cache write lock (instantiating)

* Fix references to local files

* A little less repetition than that...

* Fix unclosed channel causing windows failure

* Fix file sync issues when writing .index.json files + others

* Add TRUNCATE_EXISTING and WRITE open options (fix overwrite behavior)

* Revert "Add TRUNCATE_EXISTING and WRITE open options (fix overwrite behavior)"

This reverts commit cfed736cd6.

* Revert "Fix file sync issues when writing .index.json files + others"

This reverts commit 4daf7feb93.

* Some additional test coverage, since I already wrote it.

* Don't build indexes implicitly during reads.

* Woops. Forgot that a directory can disappear via deletion

* Remove larger package

* Clean up code + remove System.out chatter

* Remove long running test (is tested elsewhere) + clean up code
2024-08-27 11:29:41 -04:00
Grahame Grieve 292c6526dd Add time to output 2024-08-27 07:21:41 +08:00
Grahame Grieve 829e1599a0 new messages for tx.fhir.org 2024-08-26 22:49:36 +08:00