d8e2e020af
fix failing tests
2023-07-21 12:41:56 +10:00
fc75c0ea6b
fix up bi-di warning message
2023-07-20 08:21:34 +10:00
616cf5fdb3
Add provisional support for alternate codes
2023-07-20 08:21:19 +10:00
4fb70ba1e8
other missed code
2023-07-18 11:08:57 +10:00
ced714305d
Fix to get context variables right when running invariants + fix for parent not always being populated + check type in derived profiles
2023-07-18 11:05:06 +10:00
2cb7c052af
OMOP importer
2023-07-05 07:23:47 +10:00
09b653d9ed
better testing of extension context (when limited to profile)
2023-07-05 07:23:32 +10:00
5382025b44
Fix bug in Package installation
2023-07-01 07:31:51 +10:00
bef82f5630
remove bad logging
2023-06-30 16:32:29 +10:00
adfa344e5e
pay attention to closing streams
2023-06-30 14:38:04 +10:00
dfb0e0d5b9
Fix windows file renaming issue
2023-06-30 13:42:46 +10:00
99d6060363
Android support
2023-06-30 08:41:27 +10:00
1dd41134a0
Stream line Package install process for Android
2023-06-30 08:41:18 +10:00
bb66eccf45
Allow target to be treated as source when validating FML
2023-06-29 13:18:01 +10:00
2cdd92868b
SPDX: Fix missing code for 'not-open-source'
2023-06-29 13:14:28 +10:00
a0c776e61d
Merge pull request #1327 from hapifhir/do-20230627-fix-help-placeholders
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Fix CLI '-help' text placeholders
2023-06-28 15:51:29 +10:00
9b94e6a1ec
Fix test for correct type name in logical models (CDA)
2023-06-28 15:10:20 +10:00
284ad1c2be
fix bug loading package
2023-06-28 11:06:09 +10:00
a114d751db
Refactor version utility code
2023-06-27 11:29:24 -04:00
4b07f4f7dc
fix missing error validation structure maps
2023-06-27 22:18:56 +10:00
ba27fc9da7
fix testing bugs
2023-06-24 09:36:45 +10:00
3570bcb07f
Finish changes for Npm loading changes
2023-06-24 09:05:14 +10:00
2f253f3457
Update SPDX implementation
2023-06-24 08:55:51 +10:00
0615f2a163
Minimal Memory model for NpmPackage
2023-06-22 15:05:59 +10:00
189d9811c0
Allow custom folder for NPM Cache, for Android
2023-06-21 17:13:17 +10:00
fea8d5c29a
fix test cases
2023-06-21 11:40:39 +10:00
ea8e26df62
update release notes
2023-06-21 10:53:54 +10:00
098b8d5520
fix extension context checking
2023-06-21 09:22:47 +10:00
ec7b79bc1e
Fix rendering for unresolvable value sets
2023-06-20 07:02:26 +10:00
ac68a99429
More validate invariants
2023-06-19 22:43:24 +10:00
19d3952b11
Validate FHIRPath constraints in IGs and profiles
2023-06-19 22:42:02 +10:00
8e0e360350
Merge pull request #1306 from hapifhir/do-20230612-ssl-too-trusting
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Get rid of too trusting SSLCertTruster
2023-06-19 02:31:17 +10:00
712582d941
fix test cases
2023-06-18 19:48:33 +10:00
ff92de7c1d
Fix failing tests
2023-06-18 18:18:19 +10:00
dfb4404ce6
Add support for mustHaveValue and valueAlternatives + render imposesProfile + compliesWithProfile
2023-06-18 13:00:58 +10:00
64f84274af
Validation Derived Questionnaires
2023-06-17 09:41:06 +10:00
7fa80ac80b
Get rid of too trusting SSLCertTruster
2023-06-12 15:53:41 -04:00
8c412d78ef
fix bugs in language handling
2023-06-07 21:31:25 +02:00
bfdb28b96e
add JsonObject.clear()
2023-06-07 13:57:56 +02:00
33d60c2496
clean up display error messages
2023-06-05 21:17:12 +02:00
0bcb9d6196
make NPM packages slightly smaller
2023-06-05 21:17:02 +02:00
01b4219259
update language file handling to handle context properly
2023-06-05 21:16:51 +02:00
d4d5b42aa1
add Resource Dependency walker + Resource Minifier functionality
2023-05-31 06:32:55 +03:00
ea84271d84
release new test cases
2023-05-29 08:58:52 +03:00
783a8cf28b
Support for Obligation Profiles
2023-05-29 01:12:46 +03:00
70a450bf01
more json and xml utils
2023-05-25 16:42:26 +10:00
0ec2dfab78
Add support for SubscriptionTopic in R4 IGs
2023-05-24 16:57:09 +10:00
0bcb2ab268
Strip all paras
2023-05-23 17:41:16 +10:00
035841f13e
#692 - error when meaning-when-missing found in profiles
2023-05-22 21:07:17 +10:00
7da282b5d7
update test cases for various issues encountered and fixed
2023-05-22 17:17:17 +10:00
f97da1c722
Merge pull request #1261 from hapifhir/gg-202304-display-warning
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Gg 202304 display warning
2023-05-17 13:08:13 +10:00
9f205044d3
Switch to System.err for now + report missing constants
2023-05-16 10:37:43 -04:00
819685b63c
Add I18n tests for coverage and plural validity + fix missing messages
2023-05-15 15:41:26 -04:00
d624385da6
Merge remote-tracking branch 'origin/master' into pw/translations-de
2023-05-15 14:40:28 +02:00
4ef84228cf
added missing german translations
2023-05-15 14:39:53 +02:00
6d2e3ee388
Fixes for display warnings
2023-05-13 21:47:25 -07:00
37bf22f8e9
Add path to error message
2023-05-13 21:46:58 -07:00
0382242b1b
Fix r5 url for package fetch ( #1260 )
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* Fix r5 url for package fetch
* Revert previous commit
* Make r6 the only packages fetched from build.fhir.org
2023-05-12 16:52:18 -04:00
5242d7c9fa
Allow NPM package versions to have the form {id}#{url} for direct acc… ( #1258 )
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* Allow NPM package versions to have the form {id}#{url} for direct access to packages
* fix case issue
---------
Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
2023-05-10 10:22:41 -04:00
28d8491f05
Merge pull request #1247 from pieter-edelman-nictiz/issue-133
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#133 : Escape just embedded HTML tags, not autolinks in Markdown
2023-05-10 05:46:22 -05:00
de0af46394
fix npe and improve error message about uri values
2023-05-09 18:51:03 -05:00
ae13abfc2a
performance related changes
2023-05-07 11:04:04 -05:00
c5f5689714
fixes for R5 redirector
2023-05-07 07:14:44 -05:00
d35b881cf1
Fix FHIRPath split function
2023-05-06 09:55:36 -05:00
f734f98c05
update for failing tests
2023-05-05 22:21:05 -05:00
b402fd1c45
Fix bug handling filter, and refactor terminology code
2023-05-05 13:55:23 -05:00
806c065fcb
fix version return + profile support in testing
2023-05-04 10:01:35 +10:00
33694d9e2b
133: Improve regex and tests to escape just embedded HTML tags, not autolinks in Markdown
2023-05-03 16:48:47 +02:00
07c95455a4
#133 : Escape just embedded HTML tags, not autolinks in Markdown
2023-05-02 20:40:49 +02:00
43ef45813b
Improvements to StructureMap validation use with profiles (+ fix various bugs)
2023-05-01 18:10:05 +10:00
7f8817295b
Fix NPE
2023-05-01 18:09:26 +10:00
7b5aceb722
Language improvements for Lang Packs
2023-05-01 18:09:15 +10:00
28b21d566a
Fix up error messages
2023-04-28 18:56:00 +10:00
d60db32e37
more quote fixing
2023-04-28 17:50:13 +10:00
f9121a51c9
Merge branch 'master' into gg-202304-extension-validation
2023-04-28 17:47:11 +10:00
d021a9dc7f
Merge branch 'hapifhir:master' into master
2023-04-28 09:39:54 +02:00
b4870b0a6b
Updated Dutch according to Messages.properties
2023-04-28 09:38:53 +02:00
9a165b75d4
Fixed some more typos
2023-04-28 09:31:09 +02:00
069dc03c90
Validate Extension Context + fix questionnaire value set validation
2023-04-28 17:28:28 +10:00
07a08f5de2
Fixed two typos
2023-04-28 08:51:30 +02:00
53eae9b51f
fix error messages
2023-04-28 10:14:17 +10:00
6e2b113f94
improved error message
2023-04-28 07:36:39 +10:00
789eae760e
Merge pull request #1236 from ahenket/patch-1
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Fixed missing = in key "QUESTIONNAIRE_QR_ITEM_BADOPTION_CS"
2023-04-28 06:33:00 +10:00
de75e4db52
Fixed missing = in key "QUESTIONNAIRE_QR_ITEM_BADOPTION_CS"
2023-04-27 17:50:43 +02:00
07a2e63941
more http logging to subdirectory of temp
2023-04-27 20:09:23 +10:00
3ed7813973
language translations support in validator
2023-04-25 21:51:31 +10:00
b6b4fbcd0c
more tx test fixes
2023-04-24 23:08:29 +10:00
907126703f
fix default server settings
2023-04-22 18:55:56 +08:00
1498823d5f
fix error processing nucc locally
2023-04-21 18:53:03 +08:00
fe86ab1d7c
reorg server settings
2023-04-21 18:52:36 +08:00
580079f26d
allow to prohibit network access from within code
2023-04-21 12:25:54 +08:00
9b4b1ae2cc
Add -fhir-settings param to Validator CLI ( #1203 )
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* Start work
* Tests for new Param
* More tests, add param, refactor
* Rename + JsonProperty annotations
* Logging for API keys
* WIP rename search parameter + add settings object for serialization
* Switch to JSON based settings file.
* Rename FHIRSettings and remove ToolGlobalSettings
* Update default path for settings file + expand test
* Only allow single instantiation with explicitFilePath
* Move and expand tests
* Fix failing test
* Add test for FhirSettings param precedence
* Refactor to only call getInstance() internally in FhirSettings
2023-04-19 17:18:29 -04:00
5ec1bd9f67
fix npe
2023-04-18 09:51:23 +08:00
cc8c7be307
fix which servers tests are based on
2023-04-18 09:41:15 +08:00
02bd1d8ce7
more fixing for language handling issues
2023-04-18 09:40:49 +08:00
81d26c5160
work on no-network-access mode
2023-04-18 09:39:59 +08:00
f1d5676425
run txTests from validator
2023-04-16 21:56:41 +10:00
48e86fa905
fix failing tests
2023-04-14 22:39:48 +10:00
6ac00b8c68
rework terminology interface
2023-04-14 17:59:06 +10:00
03eb6e7bf0
more work doing terminology server testing
2023-04-08 15:06:51 +10:00
548284fcda
rework language handling again
2023-04-02 23:08:17 +10:00
0bbff8d14d
rework package cache manager - add testing mode
2023-04-02 23:06:29 +10:00
981d233827
fix index error validating HierarchicalTable
2023-04-01 07:34:14 +11:00
7ef17d41d6
warning not error when the code system isn't known validating questionnaire answer options
2023-04-01 07:33:56 +11:00
e59c83855d
Defining the existence of R6
2023-04-01 07:32:02 +11:00
e18cfcf0f8
Add reading translations
2023-03-30 23:30:53 +11:00
1b6137967f
i18n framework for HTML generation in renderers - step #1
2023-03-30 10:16:51 +11:00
12de53f336
Work on language translations
2023-03-30 06:32:10 +11:00
bbdb3dea89
undo dependency on test case packages (memory reasons)
2023-03-29 17:10:38 +11:00
d7817c785a
XML utils - add tag
2023-03-29 15:06:59 +11:00
520d13ab51
fix R5 path for spec
2023-03-29 15:06:35 +11:00
0233e48a1c
suppress prism if ttl source is too big
2023-03-29 15:06:24 +11:00
9460f1f64b
Merge pull request #1183 from hapifhir/do-20230315-pathbuilder
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Give finer grained control over path building with dedicated PathBuilder class
2023-03-28 05:47:26 +11:00
3044a188d9
Add PathBuilder documentation clean up code.
2023-03-27 10:41:44 -04:00
7bf243f593
Merge pull request #1188 from hapifhir/gg-202303-ftp-windows
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Fix FTP problem on windows
2023-03-24 22:20:05 +11:00
ac64a6bbd7
Fix FTP problem on windows
2023-03-24 21:13:54 +11:00
37206a1f30
Merge pull request #1187 from hapifhir/gg-202303-r5-final-gen
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Gg 202303 r5 final gen
2023-03-24 11:50:23 +11:00
b8777319da
update tests to use R5 package from test case repo everywhere
2023-03-24 10:18:42 +11:00
d16e6d3249
Merge pull request #1184 from hapifhir/gg-202303-r5-final-gen
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Gg 202303 r5 final gen
2023-03-23 21:42:19 +11:00
b5c48d1934
rebuild .index.json if it's empty
2023-03-23 20:49:55 +11:00
f122dc164f
update code for R5 final
2023-03-23 20:48:38 +11:00
36dce28691
Make getter for remote separator
2023-03-22 17:31:40 -04:00
8ce7cd8323
Merge remote-tracking branch 'origin/master' into do-20230315-pathbuilder
2023-03-22 12:09:56 -04:00
6173d77a24
Merge pull request #1181 from hapifhir/gg-202303-vs-example-urls
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Gg 202303 vs example urls
2023-03-22 23:56:01 +11:00
74a69de992
validate example URLs in value sets correctly
2023-03-22 23:06:33 +11:00
05a367b088
validate example URLs in value sets correctly
2023-03-22 23:06:06 +11:00
1442f1609c
Stop re-initializing file type and mode with each upload ( #1178 )
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* Stop re-initializing file type and mode with each upload
* Methods for setting up buffer size
2023-03-21 15:36:19 -04:00
f796ffc57f
fix issues with help16.png
2023-03-21 18:21:42 +11:00
c053ed9c6e
suppress data attributes in XHTML
2023-03-21 17:27:14 +11:00
5444c3a33a
Inline help6.png in resources
2023-03-21 17:26:51 +11:00
7ea1e5197d
Fix OS issue with zipslip protection
2023-03-21 06:14:01 +11:00
7a85bc00c9
Merge branch 'master' into do-20230315-pathbuilder
2023-03-20 11:38:53 -04:00
e1fed0a8eb
Merge remote-tracking branch 'origin/master'
2023-03-19 08:52:55 +11:00
95f3fdd187
Add file: to URL scheme list
2023-03-19 08:52:49 +11:00
cbf864b1b9
Refactor FTPClient to perform fewer directory creates ( #1159 )
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* Refactor FTPClient to perform fewer directory creates
* Restore old main
* More lenient test for delete timing (delete is fast)
* More timing leniency
* Add more checks for command completion, switch time track to nanos
* Logging logging logging
2023-03-16 14:53:59 -04:00
cf9bd54a74
fix bug in XhtmlNode
2023-03-16 15:42:04 +11:00
413cbb115a
fix issues with R3R4MapTester
2023-03-16 14:08:00 +11:00
27598a382d
Fix issues with xhtml handling
2023-03-16 14:07:11 +11:00
19cb639d37
refactor how types are handled loading packages
2023-03-16 13:26:34 +11:00
0ae4aa9a0f
Start pathbuilder work
2023-03-15 16:20:51 -04:00
6be0becc61
fix for NPE
2023-03-14 21:28:37 +11:00
a45de03431
add tail() to Utilities
2023-03-13 13:53:41 +11:00
96f265653e
fix run time test
2023-03-12 23:02:46 +11:00
957e9fe7cc
Load all types not no types from Npm Package when no types are specified
2023-03-11 18:54:23 +11:00
10d560c859
Add support for locally processed special case code systems (and an example - rgb)
2023-03-10 21:28:08 +11:00
1212b85b5e
Change from Error to FHIRException when wrong value type is wrong on polymorphic element
2023-03-10 16:12:59 +11:00
cedadbcbe7
Convenience method for unchecked read only use of Utilities.path ( #1164 )
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* Convenience method for unchecked read only use of Utilities.path
* Restore remove first null behaviour
* Method rename and update JavaDoc
2023-03-09 22:08:41 -05:00
909f7e64fe
Additional zip-slip tests ( #1162 )
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* Additional zip-slip tests
* Fix windows path test
2023-03-09 14:30:53 -05:00
95813d9004
Fix FML Comments parsing, and add StructureMap rendering to pretty FML
2023-03-09 19:44:57 +11:00
187d3e98c7
More fixes for structure map validation
2023-03-09 09:11:31 +11:00
53e67bc1cb
handle re-use of mapping groups when validating maps
2023-03-08 09:11:24 +11:00
26eb1311a4
release notes
2023-03-07 23:33:35 +11:00
6bf26255ab
fix structure map validation issues around type
2023-03-07 20:58:51 +11:00
58a933094f
fix json escaping
2023-03-07 06:30:01 +11:00
0c26f09721
revise whitespace handling for unicode conformance in validator
2023-03-07 06:25:45 +11:00
5eca02f879
bug fixes
2023-03-06 23:33:38 +11:00
6559c4b245
improve SM validation message
2023-03-06 20:45:05 +11:00
507ff74c23
recognise R4B and R5 core packages
2023-03-06 20:44:41 +11:00
adafa7eec8
Improve Specification Difference Engine
2023-03-06 16:55:02 +11:00
36d22c522a
make xhtml nodes use less memory
2023-03-06 10:32:54 +11:00
356e500ab6
finish ConceptMap validation
2023-03-05 23:25:12 +11:00
ec72b1fcdd
fix parsing and validating of concept maps in structure maps + validate terminology part of structure maps
2023-03-05 18:29:11 +11:00
c42da7af68
more package hacking work
2023-03-05 06:14:22 +11:00
52c97f3c70
test primitive regexes if other tests pass
2023-03-05 06:14:07 +11:00
99d2421014
fix using wrong version of extensions package
2023-03-02 08:49:22 +11:00
31b770db8a
ping build
2023-03-02 07:36:10 +11:00
abba72d099
Fix bug in CommaSeparatedStringBuilder
2023-03-01 21:48:43 +11:00
4c30621491
structuremap validation and invariant fixes for forthcoming R5 release
2023-02-27 18:32:38 +11:00
2bd73c650e
Work on StructureMap validation
2023-02-27 07:30:04 +11:00
d3a407e369
FML validation
2023-02-25 14:05:03 +11:00
521e72a5ff
Merge pull request #1110 from balhoff/rdf-wg-r5-with-generated
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Implement R5 RDF format changes
2023-02-24 10:21:19 +11:00
1eeee429ce
More markdown detection work
2023-02-21 16:52:32 +11:00
3eda8580fc
fix rendering for conditional references
2023-02-21 16:46:02 +11:00
76a3129b30
fix validation of conditional references
2023-02-20 23:48:16 +11:00
455d2774da
remove reference to package-client folder
2023-02-20 10:44:11 +11:00
38a55d261d
update table generator to suppress external links in base row and column
2023-02-18 15:13:13 +11:00
fecf024952
FHIR-40387 Improve guidance for markdown datatype
2023-02-16 13:03:37 +11:00
3011b37df4
fix bugs in XHTML parser (common entities)
2023-02-16 10:07:18 +11:00
c3580528bb
Fix Turtle syntax errors with multiline comments.
2023-02-15 09:58:25 -05:00
d1690a9416
Merge pull request #1101 from hapifhir/do-20230202-fix-jsonobject-instant-test
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Fix JsonObjectTests interaction with Instant
2023-02-15 08:31:58 +11:00
97772ada1e
Merge branch 'master' into rdf-wg-r5
2023-02-14 13:47:28 -05:00
33a84012f2
fix bug parsing html entities
2023-02-14 17:32:26 +11:00
d5d83bea9c
fix broken links in R5 builds
2023-02-14 09:53:22 +11:00
3a427385c5
FHIR QA driven changes
2023-02-12 17:53:41 +11:00
e6548bcccd
add unCamelCaseKeepCapitals
2023-02-09 17:39:47 +11:00
1d4f1e9d90
fix bug with duplicate value in getResourceNames()
2023-02-06 05:38:02 +11:00
7b3e206b1c
Fix JsonObjectTests interaction with Instant
2023-02-02 13:52:01 -05:00
5dc19cd052
Tweak spacing.
2023-02-01 11:55:11 -05:00
69ce2b45f2
Output lists in examples using RDF lists. Don’t output fhir:index.
2023-01-31 14:11:29 -05:00
08ed54fd35
Rework Package API to allow for authentication on package servers
2023-01-31 10:32:21 +11:00
4ab03c5c93
cater for "." in XML element and attribute names
2023-01-31 07:23:52 +11:00
cca38587ce
Cleanup jetbrains annotations ( #1090 )
...
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-01-23 18:27:47 -05:00
b50aec5912
Advisory fix 1 ( #1089 )
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* Update cache and comparison downloads to use https
* Zip Slip tests and fix
* Zip Slip tests 2 and fix
* Add missing tempDir child in ScannerTest
* Add win format zip test
* Add tests to r4b
* Add tests and fixes for slips in tgz processing
* Update fhir-test-cases version
2023-01-20 16:56:57 -05:00
f8e6371e1f
Merge branch 'master' into gg-202301-sm-errors
2023-01-20 19:44:24 +11:00
68b36d3cb5
go-publish related changes
2023-01-20 11:23:17 +11:00
f58b7acfb5
Swaps isBase64 with internal implementation for Android compatibility ( #1079 )
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* Adding animal sniffer to display all issues related to android compatibility.
* Duplicate isBase64 internally
Co-authored-by: Vitor Pamplona <vitor@vitorpamplona.com>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-01-18 18:40:24 -05:00
885e55352f
FTPClient: upload file path creation, logging, and improved default path ( #1078 )
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* More logging of errors.
* WIP create path for file to upload.
* WIP Tests
* More tests
* Improved logging and path fixes
* Clean up imports
* Rename test
* add testing code
Co-authored-by: dotasek <david.otasek@smilecdr.com>
Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
2023-01-18 12:42:59 -05:00
829cea8d33
Add check for slicing at the root of a profile
2023-01-17 11:41:42 +11:00
4b1a3dba46
Improve URN validation
2023-01-16 22:13:53 +11:00
a61d860ddb
FTP passive mode
2023-01-16 22:13:38 +11:00
Grahame Grieve
Grahame Grieve
dotasek
dotasek
patrick-werner
Pieter Edelman
Alexander Henket
Jim Balhoff