Commit Graph

513 Commits

Author SHA1 Message Date
markiantorno 06a1d523a3 Updating version to: 6.0.19-SNAPSHOT and incrementing test cases dependency. 2023-06-29 05:12:43 +00:00
markiantorno 76955fa3d5 Release: v6.0.18
## Validator Changes

* Fix issue loading SPDX value set + Fix missing code for 'not-open-source'
* Allow target to be treated as source when validating FML
* Fix issues validating names and urls for logical models
* Don't duplicate warnings about missing expressions on invariants in R5

## Other code changes

* Handle case where base hasn't got a snapshot generating snapshots
***NO_CI***
2023-06-29 04:47:28 +00:00
markiantorno 7ffbe7703d Updating version to: 6.0.18-SNAPSHOT and incrementing test cases dependency. 2023-06-28 07:13:43 +00:00
markiantorno 345151b132 Release: v6.0.17
## Validator Changes

* Fix check for correct type name use in logical models (for CDA)
* Fix bug loading packages (introduced working on minimal loading)
* Fir NPE processing R3 Structure Definitions
* exempt ele-1 from constraint consistency checking
* Add -watch-scan-delay and -watch-settle-time
* fix missing error validating structure maps
* Fix bug with erroneous warning in snapshot generation about profile not being found
* Update SPDX code system to latest version
* Output proper filename in validation log

## Other code changes

* Refactor version utility code
* Fix help placeholders
* Better error when handling loading resources
* fix duplicate element generation in CDA.AD type snapshot generation
* Fix message about rendering problem. Actual solution... not sure.
* Minimal Memory model changes for Npm for Android
***NO_CI***
2023-06-28 06:47:19 +00:00
markiantorno 67cb3006f2 Updating version to: 6.0.17-SNAPSHOT and incrementing test cases dependency. 2023-06-21 07:40:48 +00:00
markiantorno 8bd0f0b1ad Release: v6.0.16
## Validator Changes

Post DevDays Release - many significant changes!

* Add ```-watch-mode``` parameter (See [doco](https://confluence.hl7.org/display/FHIR/Using+the+FHIR+Validator#UsingtheFHIRValidator-Watchmode))
* Start checking constraint expressions defined in profiles and logical models, and update FHIRPath for logical models
* Start checking ElementDefinition.mustHaveValue and ElementDefinition.valueAlternatives
* Start validating derived questionnaires
* Tighten up checking on FHIRPath - enforce use of ```'```, and don't accept ```"``` for string delimiters
* Add ```-allow-double-quotes-in-fhirpath``` parameter ([doco](https://confluence.hl7.org/display/FHIR/Using+the+FHIR+Validator#UsingtheFHIRValidator-LegacyFHIRPathSetting))
* Fix error when validating profiles that mix canonical() and Reference() types
* Fix extension context checking
* Fix erroneous FHIRPath expression eld-11 when loading
* Fix incomplete support for ```-display-issues-are-warnings``` parameter
* Fix broken NullFlavor binding in R4
* Fix various NPE errors doing value set validation (+ logging tx operations)
* Minor performance improvements to start up time
* Auto-update implied slicing elements when min < slice min

## Other code changes

* Add CodeQL to the build process
* Various NPE fixes
* Add getValueAsString(TemporalPrecisionEnum) method to date/time types
* Fix rendering for unresolvable ValueSets
* Remove r4b eclipse project files
* Upgrade multiple dependency libraries (per CodeQL)
* Only record sorting errors when generating snapshots when debug mode is on
* Tighten up SSL certificate checking
* Partial refactor of CLI parameter handling
* Fix path regex (per CodeQL)
* Remove erroneous logging from conversion tests
* Rendering improvements for various profile related extensions
* More work on TxTests operation (lenient wrt extensions)
* Fix handling of summary extension (delete duplicate tools summary extension, and don't inherit it)
* Reprocess URLs in Markdown extensions on both StructureDefinition and ElementDefinition
* Improve URL detection in markdown when reprocessing URLs
***NO_CI***
2023-06-21 07:09:07 +00:00
dotasek 829882773a
More use of dependencyManagement, bump guava (#1313) 2023-06-19 12:26:21 -04:00
markiantorno 8237fb862b Updating version to: 6.0.16-SNAPSHOT and incrementing test cases dependency. 2023-06-08 21:23:36 +00:00
markiantorno cc14a4142f Release: v6.0.15
## Validator Changes

* no changes

## Other code changes

* Update commons-beanutils and apache.poi dependencies
***NO_CI***
2023-06-08 20:56:04 +00:00
markiantorno 10f466487b Updating version to: 6.0.15-SNAPSHOT and incrementing test cases dependency. 2023-06-08 05:03:27 +00:00
markiantorno 3969ac75c4 Release: v6.0.14
## Validator Changes

* no changes

## Other code changes

* Fix bugs in language handling
* Implement Trivy vulnerability scanning and update POI and okhttp libraries
***NO_CI***
2023-06-08 04:33:30 +00:00
markiantorno 619703dbf8 Updating version to: 6.0.14-SNAPSHOT and incrementing test cases dependency. 2023-06-07 13:14:17 +00:00
markiantorno b704ea50fc Release: v6.0.13
## Validator Changes

* no changes

## Other code changes

* add clear() to JsonObject
***NO_CI***
2023-06-07 12:48:04 +00:00
markiantorno a605d944bc Updating version to: 6.0.13-SNAPSHOT and incrementing test cases dependency. 2023-06-06 21:27:18 +00:00
markiantorno 8edd61a197 Release: v6.0.12
## Validator Changes

* Improve message when there's multiple display options

## Other code changes

* Fix loading issue with r5 extensions
* NPM package compression improvements
* Update language file handling to handle context
* Remove logical models in minifier, and other improvements
* Auto update minimum slicing cardinality when slicer is assumed (extensions)
***NO_CI***
2023-06-06 20:55:08 +00:00
markiantorno 72eee9cab7 Updating version to: 6.0.12-SNAPSHOT and incrementing test cases dependency. 2023-06-02 14:24:34 +00:00
markiantorno 44db954743 Release: v6.0.11
## Validator Changes

* no changes

## Other code changes

* Increment CQFramework dependency
***NO_CI***
2023-06-02 13:58:04 +00:00
markiantorno f238d1af14 Updating version to: 6.0.11-SNAPSHOT and incrementing test cases dependency. 2023-05-29 22:43:58 +00:00
markiantorno edd06865c7 Release: v6.0.10
## Validator Changes

* no changes

## Other code changes

* Delete unused package import that breaks downstream JavaDoc
***NO_CI***
2023-05-29 22:14:49 +00:00
markiantorno 253357e5aa Updating version to: 6.0.10-SNAPSHOT and incrementing test cases dependency. 2023-05-29 13:44:41 +00:00
markiantorno 4014698c7d Release: v6.0.9
## Validator Changes

* Add support for "Obligation Profiles" (see https://chat.fhir.org/#narrow/stream/179177-conformance/topic/Proposed.20new.20Profile.20features)
* Adjust slice min/max checking to ignore type slices (rules are different in this case)
* Properly handle validating mime/type when terminology server is not available

## Other code changes

* Rework Pipelines - more stability and quicker
* Fix bug where elementmodel.Element.copy() didn't clone children. Users of the Element Model (not the normal model) should check all uses of copy. (Only known users are Validator + IG publisher)
* Add nimbus & ZXing to core library dependencies for forthcoming improved SHC/SHL support
***NO_CI***
2023-05-29 13:18:12 +00:00
markiantorno 8f52ad8fe8 Updating version to: 6.0.9-SNAPSHOT and incrementing test cases dependency. 2023-05-24 14:51:20 +00:00
markiantorno 4f90606776 Release: v6.0.8
## Validator Changes

* Snapshot Generation Changes:
** Check for slicenames without any slicing
** Check that slice names are unique
** Check for additional slicing rules in a set of slices
** Check that the minimum cardinality of a set of slices is correct
* Clean up duplicate errors when dates/dateTimes/instants have invalid formats
* Handle unknown code systems consistently when validating coded elements
* Handle sub-slicing case where slice matches both the slice definition and the sub-slice definition

## Other code changes

* Add support for R4B to loader
* Change type if cache-id parameter
* Change snapshot generation to not update documentation from profile for elements with profiled types that are not extensions
* Add support for TestPlan and SubscriptionTopic in R4 IGs
***NO_CI***
2023-05-24 14:23:30 +00:00
markiantorno ff8943061c Updating version to: 6.0.8-SNAPSHOT and incrementing test cases dependency. 2023-05-17 04:54:30 +00:00
markiantorno 9221395f06 Release: v6.0.7
## Validator Changes

* Update terminology for changes to tx validation policy: Wrong displays change from a warning to an error
* Add parameter ```-display-issues-are-warnings``` for restoring original behaviour that display issues are warnings
* Relax constraints on Reference targets for logical models
* Update dutch and german validation error messages + minor improvements to error messages
* Fix r5 url for package fetch (#1260)  …

## Other code changes

* Fix up all terminology cache tests
* Switch to System.err for now + report missing constants
* Add I18n tests for coverage and plural validity + fix missing messages
* Partial fix for R4/R5 conversion issues
***NO_CI***
2023-05-17 04:23:04 +00:00
markiantorno 110f695e9c Updating version to: 6.0.7-SNAPSHOT and incrementing test cases dependency. 2023-05-12 23:49:33 +00:00
markiantorno 171a87c777 Release: v6.0.6
## Validator Changes

* no changes

## Other code changes

* Update R6 package tgz fetching
***NO_CI***
2023-05-12 23:22:47 +00:00
markiantorno 44c1b43516 Updating version to: 6.0.6-SNAPSHOT and incrementing test cases dependency. 2023-05-10 15:28:58 +00:00
markiantorno 91de165e2c Release: v6.0.5
## Validator Changes

* Fix NPE validating StructureMap
* Improve error message about uri values
* Fix for wrong display when server returns error
* Slight improvement in performance
* Fix FHIRPath split function (parameter is not regex)
* Stop warning that Markdown autolinks need to be escaped
* Allow NPM package versions to have the form {id}#{url} for direct access to packages

## Other code changes

* Support for NamingSystem conversion of url, version, and title (for THO)
* Update Conversion package docs (#1257)  …
* Return codeableConcept from validate-code
* Refactor: Resource Root Elements Conversion
* Minor fixes for R5 redirector
* Fix bug handling filter, and refactor terminology code
* Fix for dstu2016may Resource equals methods (#1251)  + Tests a
***NO_CI***
2023-05-10 14:58:38 +00:00
markiantorno 551fe6d7c0 Updating version to: 6.0.5-SNAPSHOT and incrementing test cases dependency. 2023-05-04 13:17:39 +00:00
markiantorno 83a45f95f9 Release: v6.0.4
## Validator Changes

* Fix bug accessing canonical resources on servers

## Other code changes

* Various changes to support terminology service testing
***NO_CI***
2023-05-04 07:22:08 +00:00
markiantorno 8ba62413ff Updating version to: 6.0.4-SNAPSHOT and incrementing test cases dependency. 2023-05-01 15:33:38 +00:00
markiantorno 9ed0b9ccee Release: v6.0.3
## Validator Changes

* Structure map validation improvements

## Other code changes

* Fix wrong name for systemVersion Parameter
* Language improvements for Lang Packs
* Fix up StructureMap R4/R5 conversion
***NO_CI***
2023-05-01 15:05:34 +00:00
markiantorno 03a1271508 Updating version to: 6.0.3-SNAPSHOT and incrementing test cases dependency. 2023-04-28 23:47:43 +00:00
markiantorno ccdaf9fe1d Release: v6.0.2
## Validator Changes

* Add support for JSON in tx client batch handling

## Other code changes

* no changes
***NO_CI***
2023-04-28 23:18:04 +00:00
markiantorno 718cd5e369 Updating version to: 6.0.2-SNAPSHOT and incrementing test cases dependency. 2023-04-28 14:29:47 +00:00
markiantorno d43d9bbdd8 Release: v6.0.1
## Validator Changes

* Improved Error messages when code is not in value set + various typo fixes
* Updated Dutch translations for error messages
* More informative failures when questionnaire value set validation fails
* Warnings when extension context is 'Element'
* Fix missing source id for tx server messages in validation output

## Other code changes

* Move HTTP logging to a sub-directory of temp
* Default to text log not HTML log for terminology logging, and don't spuriously escape the text log
* Use JSON not XML by default when using R4 terminology service
* Add support for R6 final version
* Bump HAPI to 6.4.1
***NO_CI***
2023-04-28 14:00:19 +00:00
dotasek e01aa876c8
Bump HAPI to 6.4.1 (#1237)
* Bump HAPI to 6.4.1

* Fix broken checkstyle configs

* Fix checkstyle in convertors
2023-04-27 18:11:25 -04:00
markiantorno 46259c47e0 Updating version to: 6.0.1-SNAPSHOT and incrementing test cases dependency. 2023-04-26 23:45:01 +00:00
markiantorno 5a4049e0e2 Release: v6.0.0
## Validator Changes

Note: This validator release is accompanied by a new release of tx.fhir.org, and earlier versions
of the validator will not perform validation correctly for some valuesets and languages. This is
in effect a mandatory upgrade

* Major **Breaking** change: test multi-lanugage support on the terminology service API, and make many fixes.
** This release also includes full support for supplements providing designations and properties
* Add support for -install operation to install packages and generate snapshots while at it (support simplifier packages in sushi)
* Add support for ```lang-transform extract``` and ```-lang-transform inject``` to the validator (start of multi-lingual implementation support)
* Add support for -tx-tests to validator
* Change settings file to fhir-settings.json in .fhir, instead of fhir-tools-setting.ini (see [here](https://confluence.hl7.org/display/FHIR/Using+fhir-settings.json) for documentation)
* Add provisional support for running without a network: -no-network. Beware: this is not fully tested at this point
* Warning not error when the code system isn't known validating questionnaires
* Fix up loading of IG bundles
* Work around issue with R5 path in extensions pack
* Fix issue with SearchParameter validation throwing an exception if no expressions are valid

## Other code changes

* Code to support translation functionality
* Partial fix for problem parsing maps from previous versions
* Fix Code System rendering for supplements, and when there's 1..2 display translations
* Remove spurious header from ConceptMap rendering
* Return ID part correctly when FhirPath expression result is converted to string
* fix problem with leaf rendering in profile driven renderer
* Fix R4B tests to be based on R4B
* fix index error validating HierarchicalTable
* fix NPE in requirements renderer
* Fix NPE in code generator
* Rework package cache manager - add testing mode
* Add link to questionnaire rendering questionnaireResponse + Fix access violation rendering questionnaire
* Fix bugs generating narratives
* Defining the existence of R6
* i18n framework for HTML generation in renderers - step #1
* Re-org validation testing to be more memory efficient
* Better error handling loading resources
* Restore broken R4 loading
* Add new R5 fields to R4/R5 conversion for ValueSet
* minor changes two HumanName.getNameAsSingleString (missed family name)
***NO_CI***
2023-04-26 23:16:02 +00:00
Grahame Grieve 085ddde843 bump major version 2023-04-27 08:00:56 +10:00
dotasek 6a21d05ab8
Set JaCoCo evaluation via variable (#1213)
* Set JaCoCo evaluation via variable

* Fix variable syntax

* Try syntax again

* And again

* Evaluate against currentName

* More syntax fixes

* Evaluate condition via eq

* Fix logic

* Temp disable failing tests

* Revert "Temp disable failing tests"

This reverts commit 9ff4c88271.

* Bump jacoco + change version property in reports

* Re-use logic for codecov execution
2023-04-12 11:46:11 -04:00
markiantorno aa8cb39580 Updating version to: 5.6.118-SNAPSHOT and incrementing test cases dependency. 2023-03-29 14:03:26 +00:00
markiantorno 3c04b80fdb Release: v5.6.117
## Validator Changes

* no changes

## Other code changes

* Fix R5 path for spec in generated narratives
* Hack to fix wrong R5 paths in generated narratives in extensions pack
* Suppress Prism rendering if ttl source is too big
* Fix up URLs in untouched elements when processing snapshots
* Fix up URLs in binding.description when generating snapshots
***NO_CI***
2023-03-29 13:36:02 +00:00
markiantorno 7928c858bb Updating version to: 5.6.117-SNAPSHOT and incrementing test cases dependency. 2023-03-27 23:58:35 +00:00
markiantorno 9f671be87b Release: v5.6.116
## Validator Changes

* Make checking displays in concept map not case sensitive and just a warning

## Other code changes

* Fix loading version of extensions package in test cases
* Don't suppress error when FML doesn't parse in FMLParser
* Add PathBuilder (documentation + clean up code)
***NO_CI***
2023-03-27 23:33:00 +00:00
markiantorno 794a9c46b6 Updating version to: 5.6.116-SNAPSHOT and incrementing test cases dependency. 2023-03-25 12:24:55 +00:00
markiantorno e68a6171ee Release: v5.6.115
Final Code changes for R5 release

## Validator Changes

* Fix NPE validating maps

## Other code changes

* Refactor Loader for easier loading of earlier versions
* Fix various NPEs from version conversion testing
* First draft of Code generation for Extensions
* Improve summary message for map conversion outcome
* Move web path out of userData into resource field
* Fix FTP problem on windows (remote seperator)
* Update tests to use R5 package from test case repo everywhere
* Finish removing population type
* Rebuild .index.json if it's empty when installing a package
***NO_CI***
2023-03-25 11:55:37 +00:00
markiantorno ce2480a745 Updating version to: 5.6.115-SNAPSHOT and incrementing test cases dependency. 2023-03-22 14:12:23 +00:00
markiantorno 7736f31847 Release: v5.6.114
## Validator Changes

* Fix up stated path in CodeSystemValidator
* Validate example URLs in value sets correctly
* Fix problem with composition library reference in R4

## Other code changes

* More work to sort out mappings
* Fix broken links in FMM & standards status levels
* Fix type of IG-parameter extension
* FTP: Stop re-initializing file type and mode with each upload (#1178)  …
* Fix snaphot generation warning when when profile-element is used
* fix path failure in tests
* Inline help16.png when generating narrative
* Suppress img.src=data content when rendering narrative
* Suppress value set expansion for core value sets that tx.fhir.org is getting wrong
* Fix NPE in profile comparison
***NO_CI***
2023-03-22 13:46:22 +00:00