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4737 Commits

Author SHA1 Message Date
Grahame Grieve 4a5985fe59
Merge pull request #1098 from hapifhir/do-fix-fhirpathengine-plurals 
Fix for #1091
 2023-02-01 14:47:59 +11:00
dotasek 6e03d34d4b
Update RELEASE_NOTES.md 
***NO_CI***
 2023-01-31 17:09:03 -05:00
dotasek f8fa68cc4a Merge remote-tracking branch 'origin/do-fix-fhirpathengine-plurals' into do-fix-fhirpathengine-plurals 2023-01-31 17:02:50 -05:00
dotasek 3ff9b9e937 Fix FHIRPath message for HAPI Test Case 
An Invalid FHIRPath message is tested in HAPI-FHIR FhirPathFilterInterceptorTest.testFilteredResponse_ExpressionIsInvalid()
 2023-01-31 17:02:12 -05:00
Neelima Karipineni 61e63b128a
Enhancements to StructureMap transform to support logical models as source and value set lookup (#1092) 
* implement resolveValueSet from AHDIS Matchbox

* get SD from map source type, set logical model

* test for getSourceResourceFromStructureMap DefinitionException

* test resolveValueSet

* test transform logical source

* fix formatting
 2023-01-31 16:56:02 -05:00
Grahame Grieve 54a883254d
Merge pull request #1096 from hapifhir/gg-202301-npm-auth 
Rework Package API to allow for authentication on package servers
 2023-01-31 18:38:05 +11:00
Grahame Grieve f9b386d5b2 r5 extension extractor 2023-01-31 16:54:30 +11:00
Grahame Grieve 1e6fd76ace special case work around for old THO problem 2023-01-31 16:07:10 +11:00
Grahame Grieve 373abb7dcc ignore ig-r4 when converting for generated package versions 2023-01-31 16:06:51 +11:00
Grahame Grieve 08ed54fd35 Rework Package API to allow for authentication on package servers 2023-01-31 10:32:21 +11:00
Grahame Grieve 8bface0a6d
Merge pull request #1095 from hapifhir/gg-202301-misc-fixes 
Gg 202301 misc fixes
 2023-01-31 08:43:12 +11:00
dotasek c4d11a73cf
Update README.md 
***NO_CI***
 2023-01-30 15:39:09 -05:00
Grahame Grieve 4ab03c5c93 cater for "." in XML element and attribute names 2023-01-31 07:23:52 +11:00
Grahame Grieve bda3a74b40 handle R3 encoding of primitive values when validating profiles 2023-01-31 07:23:33 +11:00
Grahame Grieve 7ad4bd62c6 fix for NPE rendering resources 2023-01-31 07:23:12 +11:00
Grahame Grieve d859e0b4bd Temporary Support for MedicationStatement in R5 (going to be renamed again) 2023-01-31 07:22:33 +11:00
Lloyd McKenzie 2afe12051c
Merge pull request #1093 from hapifhir/do-20230127-remove-wtf 
Replace WTF error with clearer description
 2023-01-27 12:10:36 -07:00
dotasek f5f03442aa Better error description 2023-01-27 11:22:37 -05:00
dotasek e0224e67a7 Fix FHIRPath message for HAPI Test Case 
An Invalid FHIRPath message is tested in HAPI-FHIR FhirPathFilterInterceptorTest.testFilteredResponse_ExpressionIsInvalid()
 2023-01-25 11:09:34 -05:00
dotasek cca38587ce
Cleanup jetbrains annotations (#1090) 
Co-authored-by: dotasek <david.otasek@smilecdr.com>
 2023-01-23 18:27:47 -05:00
dotasek 21f2549ddb
Merge pull request from GHSA-jqh6-9574-5x22 
* Update cache and comparison downloads to use https

* Zip Slip tests and fix

* Zip Slip tests 2 and fix

* Add missing tempDir child in ScannerTest

* Add win format zip test

* Add tests to r4b

* Add tests and fixes for slips in tgz processing

* Update fhir-test-cases version
 2023-01-23 15:02:44 -05:00
markiantorno cb441456a8 Updating version to: 5.6.93-SNAPSHOT and incrementing test cases dependency. 2023-01-20 23:14:26 +00:00
markiantorno dc677cad51 Release: v5.6.92 
## Validator Changes

* update FHIRPath implementation for corrections to 'as' (R5 only in validator)
* Critical Security fix: enforce correct paths when unpacking archives (SecurityAdvisory-1082, CVE TBA)

## Other code changes

* Update to latest FHIRPath for older versions
* Add new ElementModel based parser for StructureMaps
* go-publish related changes
* FTP Client upload and logging improvements
* Refactor base64 handling for Android compatibility

## Security Note

The validator unzips archive files to the local file system when
it is scanning zip files it has been asked to validate, and when it is
installing packages. These processes are now resistant to the zip-slip
vulnerability.
***NO_CI***
 2023-01-20 22:57:29 +00:00
dotasek b50aec5912
Advisory fix 1 (#1089) 
* Update cache and comparison downloads to use https

* Zip Slip tests and fix

* Zip Slip tests 2 and fix

* Add missing tempDir child in ScannerTest

* Add win format zip test

* Add tests to r4b

* Add tests and fixes for slips in tgz processing

* Update fhir-test-cases version
 2023-01-20 16:56:57 -05:00
Grahame Grieve b5da39ffe8 Merge remote-tracking branch 'origin/master' 2023-01-21 07:36:15 +11:00
Grahame Grieve 2c93585bb6 better error message 2023-01-21 07:36:09 +11:00
Mark Iantorno a2b766a9ec Updating test case dependency to v1.2.9 
***NO_CI***
 2023-01-20 20:06:34 +00:00
Grahame Grieve ecf775af38 add security note 2023-01-21 06:19:06 +11:00
Grahame Grieve 36ea83d5ff release notes for security alert 2023-01-21 06:11:44 +11:00
Grahame Grieve e069508ce5 release notes 2023-01-21 06:07:26 +11:00
Grahame Grieve 4a68fac9a8
Merge pull request #1087 from hapifhir/gg-202301-sm-errors 
Gg 202301 sm errors
 2023-01-20 21:25:11 +11:00
Grahame Grieve f8e6371e1f
Merge branch 'master' into gg-202301-sm-errors 2023-01-20 19:44:24 +11:00
Grahame Grieve 6fdcbf2e2c release notes 2023-01-20 17:30:39 +11:00
Grahame Grieve 68b36d3cb5 go-publish related changes 2023-01-20 11:23:17 +11:00
Grahame Grieve b16fc37b02 clean up error handling when parsing structure maps 2023-01-20 04:24:42 +11:00
dotasek f58b7acfb5
Swaps isBase64 with internal implementation for Android compatibility (#1079) 
* Adding animal sniffer to display all issues related to android compatibility.

* Duplicate isBase64 internally

Co-authored-by: Vitor Pamplona <vitor@vitorpamplona.com>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
 2023-01-18 18:40:24 -05:00
Vitor Pamplona 2c60f5b5e3
Adding animal sniffer to display all issues related to android compatibility. (#1050) 2023-01-18 18:39:44 -05:00
Grahame Grieve 7cc01ef7db update new FHIRPath for older versions 2023-01-19 07:57:05 +11:00
Grahame Grieve 26027fa3d6 update FHIRPath implementation for discussion at 84a07a6a92 2023-01-19 06:59:45 +11:00
dotasek 8c43e21094
Update RELEASE_NOTES.md 
***NO_CI***
 2023-01-18 12:43:49 -05:00
dotasek 885e55352f
FTPClient: upload file path creation, logging, and improved default path (#1078) 
* More logging of errors.

* WIP create path for file to upload.

* WIP Tests

* More tests

* Improved logging and path fixes

* Clean up imports

* Rename test

* add testing code

Co-authored-by: dotasek <david.otasek@smilecdr.com>
Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
 2023-01-18 12:42:59 -05:00
Grahame Grieve 742c22b1b8 Merge remote-tracking branch 'origin/master' 2023-01-19 03:34:15 +11:00
Grahame Grieve d7071312ba
Merge pull request #1080 from hapifhir/gg-202301-sm-em-parser 
Add ElementModel based StructureMap parser
 2023-01-18 20:07:52 +11:00
Grahame Grieve 4f2fd817a3 Merge remote-tracking branch 'origin/master' 2023-01-18 12:33:59 +11:00
Grahame Grieve c9833f94d3 Add ElementModel based StructureMap parser 2023-01-18 12:32:06 +11:00
markiantorno 4367813a2c Updating version to: 5.6.92-SNAPSHOT and incrementing test cases dependency. 2023-01-17 21:59:38 +00:00
markiantorno 7b22d0355b Release: v5.6.91 
## Validator Changes

* Fixed validation of URNs
* Check profiles don't have slicing on roof

## Other code changes

* Fix significant performance issue with profile xls generation
* Fix issue with setProperty dropping extensions in R3 - R5
* Debug logging improvements generating snapshots
* Fix issues with types missing in CDA IGs
* Fix problem converting ActivityDefinition R4(B)/R5
* More work on FTP Client
***NO_CI***
 2023-01-17 21:40:28 +00:00
dotasek a5b8a5465d Bump test case version to 1.2.8 2023-01-17 15:30:56 -05:00
Grahame Grieve 054fba7505
Merge pull request #1077 from jkiddo/master 
Reopen PR
 2023-01-18 06:58:48 +11:00
Jens Kristian Villadsen a24add4a4d
Merge branch 'hapifhir:master' into master 2023-01-17 11:01:04 +01:00