806c065fcb
fix version return + profile support in testing
2023-05-04 10:01:35 +10:00
94fd0ae795
more tests fixes
2023-05-03 17:16:16 +10:00
0b71add74c
Always report version on validation, and use the correct type for version in expansion parameters
2023-05-03 11:59:54 +10:00
410f08e6d6
terminology fixes - add expParams to cache key, fix up parameter types, report version
2023-05-02 16:58:54 +10:00
7b5aceb722
Language improvements for Lang Packs
2023-05-01 18:09:15 +10:00
53eae9b51f
fix error messages
2023-04-28 10:14:17 +10:00
829549eeff
Add support for R6 formal version
2023-04-28 07:36:13 +10:00
9d53b738df
Improved error message when code not in value set
2023-04-28 07:36:00 +10:00
949c57acbf
Do not spuriously escape in tx text log
2023-04-27 20:08:54 +10:00
30e8f64962
Switch to use text logger for tx unless html is explicitly requested
2023-04-27 20:08:20 +10:00
d04242446e
standardise lang matching
2023-04-25 21:52:17 +10:00
7487c978f2
fix code system rendering when only 1 or 2 translations
2023-04-25 21:51:59 +10:00
3ed7813973
language translations support in validator
2023-04-25 21:51:31 +10:00
20f73e2094
fix spelling mistakes
2023-04-24 23:07:09 +10:00
1498823d5f
fix error processing nucc locally
2023-04-21 18:53:03 +08:00
fe86ab1d7c
reorg server settings
2023-04-21 18:52:36 +08:00
81b3295f3c
fix path problem
2023-04-21 12:25:10 +08:00
a3dc74f3e2
fix bug digging into property type
2023-04-21 12:24:37 +08:00
696f060da3
Remove wrong id from generated value sets
2023-04-21 12:23:37 +08:00
de4da1eab5
Remove spurious header from ConceptMap rendering
2023-04-21 12:21:58 +08:00
9b4b1ae2cc
Add -fhir-settings param to Validator CLI ( #1203 )
...
* Start work
* Tests for new Param
* More tests, add param, refactor
* Rename + JsonProperty annotations
* Logging for API keys
* WIP rename search parameter + add settings object for serialization
* Switch to JSON based settings file.
* Rename FHIRSettings and remove ToolGlobalSettings
* Update default path for settings file + expand test
* Only allow single instantiation with explicitFilePath
* Move and expand tests
* Fix failing test
* Add test for FhirSettings param precedence
* Refactor to only call getInstance() internally in FhirSettings
2023-04-19 17:18:29 -04:00
2fd0a07d9f
Return ID part when FhirPath expression result is converted to string
2023-04-18 09:07:57 -04:00
2d7dfc1ee9
remove spurious debugging code
2023-04-18 09:41:58 +08:00
cdadde108f
fix problem with leaf rendering in profile driven renderer
2023-04-18 09:41:44 +08:00
ec84f6aa0b
fix minor issues in terminology engine
2023-04-18 09:41:28 +08:00
02bd1d8ce7
more fixing for language handling issues
2023-04-18 09:40:49 +08:00
81d26c5160
work on no-network-access mode
2023-04-18 09:39:59 +08:00
9530f40f9c
Fix SimpleWorkerContextTests, ignore ExternalTerminologyServiceTests ( #1217 )
2023-04-14 12:00:44 -04:00
c9416e9a56
Merge remote-tracking branch 'origin/master'
2023-04-14 18:01:18 +10:00
6ac00b8c68
rework terminology interface
2023-04-14 17:59:06 +10:00
b09e536387
Fix HumanName getNameAsSingleString never returning text element ( #1207 )
...
* Fix HumanName getNameAsSingleString never returning text element
* Add test + gentle rename in joinStringsSpaceSeparated
* removed unused variable from unit test. added fix for getNameAsSingleString to r5.
* changed variable names in joinStringSpaceSeparated to more meaningful names
* Add tests and fixes for dstu2016may, dstu3, and r4b + gentle refactor
---------
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-04-12 14:31:58 -04:00
8ba4d75451
Import original test, and fix with renamed method ( #1173 )
2023-04-12 13:22:13 -04:00
03eb6e7bf0
more work doing terminology server testing
2023-04-08 15:06:51 +10:00
730a199f7a
fix R4/R5 conversion issues
2023-04-08 15:06:09 +10:00
7d4cb4b5a2
Add support for CodeSystem supplements and correctly processing extensions when doing expansions
2023-04-03 20:47:23 +10:00
548284fcda
rework language handling again
2023-04-02 23:08:17 +10:00
0188fcedd1
fix NPE in requirements renderer
2023-04-02 23:07:52 +10:00
42a9e47379
Add terminology service tests
2023-04-02 23:07:34 +10:00
0bbff8d14d
rework package cache manager - add testing mode
2023-04-02 23:06:29 +10:00
4966731195
Add link to questionnaire rendering questionnaireResponse
2023-04-01 07:33:09 +11:00
9e98128eee
Fix access violation rendering questionnaire
2023-04-01 07:32:45 +11:00
c66da517bb
Fix bug generating narratives
2023-04-01 07:32:26 +11:00
e59c83855d
Defining the existence of R6
2023-04-01 07:32:02 +11:00
3df8593c48
Fix up loading of IG bundles
2023-03-30 23:30:41 +11:00
76c96a53d6
Work around issue with R5 path in extensions pack
2023-03-30 23:30:23 +11:00
1b6137967f
i18n framework for HTML generation in renderers - step #1
2023-03-30 10:16:51 +11:00
b1bd539b03
memory conservation testing
2023-03-30 08:31:01 +11:00
5e2330c6e2
Better error handling loading resources
2023-03-30 08:30:47 +11:00
bb94efa873
restore broken R4 loading
2023-03-30 08:30:32 +11:00
12de53f336
Work on language translations
2023-03-30 06:32:10 +11:00
50b5802d39
Don't preload resources to fix them
2023-03-30 06:24:50 +11:00
25d7affba4
fix up R5 paths that are wrong in Extensions package
2023-03-29 15:05:50 +11:00
d82bec0f90
Add binding.description to markdown fields that get their URLs processed
2023-03-29 15:03:08 +11:00
77e771af2a
Fix up URLs for untouched elements when generating
2023-03-29 15:02:45 +11:00
18cc404567
fix loading version of extensions package
2023-03-28 07:45:29 +11:00
8101ae8a3b
display checking case insensitive
2023-03-28 07:45:14 +11:00
d43d6ce19a
don't suppress error when FML doesn't parse
2023-03-28 07:44:44 +11:00
ce75d57808
fix extension status and extension generator
2023-03-25 21:54:53 +11:00
8e9b96b4b7
refactor loader for easier loading of old versions
2023-03-25 18:58:22 +11:00
ade21ddb1f
fix NPEs
2023-03-24 23:09:01 +11:00
490e588cf3
First draft of generation for extensions
2023-03-24 22:19:17 +11:00
272f00e786
move web path out of user data into resource field
2023-03-24 22:18:52 +11:00
b8777319da
update tests to use R5 package from test case repo everywhere
2023-03-24 10:18:42 +11:00
fcd6484657
finish removing population type
2023-03-24 10:17:48 +11:00
f98c2b2f03
more r5 updates
2023-03-24 01:45:34 +11:00
adf6d5e3a0
updates for R5 final
2023-03-23 20:49:30 +11:00
f122dc164f
update code for R5 final
2023-03-23 20:48:38 +11:00
417bae01b1
more work to sort out mappings
2023-03-22 23:05:44 +11:00
aba6e8958d
fix broken links
2023-03-22 13:44:52 +11:00
19760bcaf2
add todo note
2023-03-22 13:44:19 +11:00
085ce861d8
remove warning when profile-element is used
2023-03-21 19:14:00 +11:00
851d9c149d
Merge remote-tracking branch 'origin/master'
2023-03-21 17:41:52 +11:00
5444c3a33a
Inline help6.png in resources
2023-03-21 17:26:51 +11:00
075bb46fa3
Suppress value set expansion for core value sets that tx.fhir.org is handling wrongly
2023-03-21 17:26:24 +11:00
bb61229931
suppress NPE in profile comparison
2023-03-21 17:25:56 +11:00
98a7f26b84
fix problem with composition library reference in R4
2023-03-21 17:25:45 +11:00
50f2d05a87
Merge pull request #1176 from aehrc/ml-202303-fix-1175-incorrect-type-in-validate-code-call
...
Make url parameter type UriType, not StringType
2023-03-21 07:59:20 +11:00
900faa2450
part of fix for type checking
2023-03-21 06:12:16 +11:00
71a19710a0
Fix for where profile_element extension was being ignored when checking types after snapshot generation
2023-03-21 06:12:02 +11:00
2fbb607f81
Fix generated name for FML rules to be a valid name
2023-03-21 06:04:31 +11:00
11c80f7d00
allow loaders to decide which resources to load into the context
2023-03-21 06:03:36 +11:00
813a850730
adjust mappings handling code generating diffs
2023-03-19 08:52:37 +11:00
14edde2ab8
Make url parameter type UriType, not StringType
2023-03-18 10:33:16 +10:00
f8a19a1bae
Refactor how mappings are handled when generating differentials: in R5, mapping names are unique
2023-03-18 05:47:33 +11:00
fe538ea530
fhirpath tests on element model
2023-03-17 07:56:06 +11:00
72d97a2960
better error messages setting properties when transforming
2023-03-17 07:55:53 +11:00
d9c632d9ad
better error messages converting types
2023-03-17 07:55:32 +11:00
413cbb115a
fix issues with R3R4MapTester
2023-03-16 14:08:00 +11:00
27598a382d
Fix issues with xhtml handling
2023-03-16 14:07:11 +11:00
4a7abab5e8
Fix for parsing Bundle.issues
2023-03-16 14:05:54 +11:00
19cb639d37
refactor how types are handled loading packages
2023-03-16 13:26:34 +11:00
824f51f82e
fixing broken links, and r4/r5 map testing
2023-03-14 13:24:00 +11:00
46ed0157ce
fix bug parsing FML metadata
2023-03-13 13:53:27 +11:00
a6466f4265
add url and md escaping and unescape in FHIRPath + 2nd param to join()
2023-03-13 13:53:04 +11:00
753a90b463
fix bug listing types when old versions are loaded
2023-03-13 13:52:31 +11:00
7b30dc02f9
check for NPE
2023-03-13 05:10:08 +11:00
96f265653e
fix run time test
2023-03-12 23:02:46 +11:00
f11bdb9560
fix NPE
2023-03-12 21:55:44 +11:00
2dc72fcaf1
fix bug parsing FML (id)
2023-03-12 21:54:21 +11:00
43253e8d10
improve extension representation
2023-03-12 21:53:38 +11:00
525ba127e8
make sorter public and static
2023-03-11 18:59:31 +11:00
26ed139031
fix up build extensions
2023-03-11 18:58:35 +11:00
571c170e13
hack observation for change
2023-03-11 18:54:35 +11:00
83f608597a
fix errors rendering mapping file
2023-03-11 18:53:53 +11:00
939d1d06c0
improve error message
2023-03-11 18:53:29 +11:00
10d560c859
Add support for locally processed special case code systems (and an example - rgb)
2023-03-10 21:28:08 +11:00
1212b85b5e
Change from Error to FHIRException when wrong value type is wrong on polymorphic element
2023-03-10 16:12:59 +11:00
909f7e64fe
Additional zip-slip tests ( #1162 )
...
* Additional zip-slip tests
* Fix windows path test
2023-03-09 14:30:53 -05:00
9e87e6915c
Fix for NPE in R5 IG
2023-03-09 22:20:10 +11:00
3338cfbe39
fix issues parsing test maps
2023-03-09 20:57:37 +11:00
95813d9004
Fix FML Comments parsing, and add StructureMap rendering to pretty FML
2023-03-09 19:44:57 +11:00
ce246df4a0
fix comment parsing
2023-03-09 19:44:06 +11:00
187d3e98c7
More fixes for structure map validation
2023-03-09 09:11:31 +11:00
0e41463886
move test cases
2023-03-08 15:32:52 +11:00
eb852a8d03
mark location for input parsing FML
2023-03-08 11:48:37 +11:00
015d53e8ee
fix problem parsing types
2023-03-08 09:11:00 +11:00
4486c12df5
fix location bugs in FML parsing
2023-03-07 21:47:38 +11:00
6bf26255ab
fix structure map validation issues around type
2023-03-07 20:58:51 +11:00
bbc3cd5121
Fix FML parsing missing locations
2023-03-07 20:58:01 +11:00
0c26f09721
revise whitespace handling for unicode conformance in validator
2023-03-07 06:25:45 +11:00
6fe16d1812
fix bug parsing parameters in FML
2023-03-06 20:44:17 +11:00
36d22c522a
make xhtml nodes use less memory
2023-03-06 10:32:54 +11:00
356e500ab6
finish ConceptMap validation
2023-03-05 23:25:12 +11:00
ec72b1fcdd
fix parsing and validating of concept maps in structure maps + validate terminology part of structure maps
2023-03-05 18:29:11 +11:00
8ac01bd5a4
update conversions for discovered issues for R5
2023-03-03 06:30:49 +11:00
5e070b226b
Add back code missed when regenerating R5
2023-03-03 06:30:10 +11:00
99d2421014
fix using wrong version of extensions package
2023-03-02 08:49:22 +11:00
042c1dd29e
last qa fixes for R5 preview
2023-03-01 23:46:32 +11:00
68090356cb
Update for regenerated java code in 5.0.0-draft-final
2023-03-01 21:49:49 +11:00
2e11041fc5
Regenerate R5 for 5.0.0-draft-final
2023-03-01 21:49:11 +11:00
0425a2beff
suppress spurious log message
2023-03-01 05:30:10 +11:00
fe9eaca741
Merge remote-tracking branch 'origin/master'
2023-03-01 04:54:25 +11:00
94de728553
Merge pull request #1144 from hapifhir/do-20230227-fhircat-shex-fix
...
Fix for build failures in #1120
2023-03-01 04:54:10 +11:00
85eea1df09
tidy up generator code
2023-02-28 22:51:16 +11:00
4055635396
Merge pull request #1143 from hapifhir/gg-202302-fhirpath-where-cleverness
...
pick up types in FHIRPath when filtering references with .where(resol…
2023-02-28 21:44:10 +11:00
18abfdc920
pick up types in FHIRPath when filtering references with .where(resolve() is X)
2023-02-28 20:51:08 +11:00
64cea66959
Merge pull request #1141 from balhoff/anyuri-types
...
Output literal datatypes for anyURI types in RDF examples
2023-02-28 16:29:27 +11:00
1a88c6ebc8
fix for R5 hack
2023-02-28 11:13:19 +11:00
83a323ac33
Merge branch 'hapifhir:master' into master
2023-02-27 14:04:23 -06:00
13fbf16daa
Output literal datatypes for anyURI types.
2023-02-27 13:40:01 -05:00
6ba6a0ae62
Removed BASE directive, sorted value-set rendering and correct imports
2023-02-27 12:23:20 -06:00
a593e9a60d
Minor correction to align with FHIR R5 RDF changes
2023-02-27 02:18:24 -06:00
4c30621491
structuremap validation and invariant fixes for forthcoming R5 release
2023-02-27 18:32:38 +11:00
5fde3a2106
Minor correction to align with FHIR R5 RDF changes
2023-02-26 21:44:07 -06:00
2bd73c650e
Work on StructureMap validation
2023-02-27 07:30:04 +11:00
e64461e940
Corrected TypeArcs and Node Roles
2023-02-24 23:12:43 -06:00
d3a407e369
FML validation
2023-02-25 14:05:03 +11:00
9ca531ff0a
Added IMPORT for all SDs, enabled batch SD ShEx Generation. Disabled Context translation temporarily
2023-02-23 23:19:13 -06:00
3c0fb89cd7
Merge pull request #1121 from costateixeira/master
...
StructureDef: remove example label when no label is given
2023-02-24 11:40:20 +11:00
b12dbe2dfe
Merge pull request #1134 from hapifhir/gg-202302-conceptmap-hack
...
Gg 202302 conceptmap hack
2023-02-24 10:41:18 +11:00
521e72a5ff
Merge pull request #1110 from balhoff/rdf-wg-r5-with-generated
...
Implement R5 RDF format changes
2023-02-24 10:21:19 +11:00
b2ef9a3336
fix typo
2023-02-24 09:02:52 +11:00
cf2ddda8d7
workarounds for forthcoming ConceptMap change
2023-02-24 06:52:51 +11:00
5728cf94c2
Adjusted Tests for Build
2023-02-22 00:10:15 -06:00
2adf054733
Correction in ShEx Translation of FHIRPath Constraints
2023-02-22 00:05:56 -06:00
3eda8580fc
fix rendering for conditional references
2023-02-21 16:46:02 +11:00
b38c8c3ae7
track target types on references in FHIRPath
2023-02-20 23:47:50 +11:00
8a354849a7
add standardsStatus support to core model
2023-02-20 16:47:02 +11:00
b653129d1a
minor type checking fixes for FHIRPath
2023-02-20 10:43:53 +11:00
98f4a02789
fix bugs in type checking discovered during R5 preparation
2023-02-18 15:14:24 +11:00
1b86b29d1f
fix bug caused by changing DiagnosticReport.conclusion to markdown
2023-02-18 15:13:37 +11:00
38a55d261d
update table generator to suppress external links in base row and column
2023-02-18 15:13:13 +11:00
dadc3701e4
Added method comments for better understand of utility method usage
2023-02-17 15:59:54 -06:00
0e2e333fa9
remove example label when not existing
2023-02-17 21:56:51 +01:00
3eff78bdb9
Updated code to leverage EXTENDS and not duplicate datatype definitions with usage
2023-02-16 18:57:06 -06:00
e6ca865d68
ShExGenerator Tests included from working branch
2023-02-15 23:28:50 -06:00
b248d00ee7
ShExGenerator.java Changes included from working branch
2023-02-15 23:21:58 -06:00
53710b5390
Merge branch 'rdf-wg-r5' into rdf-wg-r5-with-generated
2023-02-15 10:00:28 -05:00
7f454098b9
search parameter rendering improvements
2023-02-15 12:14:48 +11:00
26f7b3a803
FHIR-38789 SD_Dependencies extension needs work
2023-02-15 12:12:28 +11:00
5c413822bd
Search Parameter Rendering improvements
2023-02-15 11:55:18 +11:00
97772ada1e
Merge branch 'master' into rdf-wg-r5
2023-02-14 13:47:28 -05:00
b46160bc8b
FHIR-27761 Tooling issues around multi-level Operations
2023-02-14 15:08:55 +11:00
de3ec0d27b
fix npe + render OperationDefinition parameter standards status
2023-02-14 12:34:19 +11:00
d9f98902b9
fix npe
2023-02-14 11:01:59 +11:00
d5d83bea9c
fix broken links in R5 builds
2023-02-14 09:53:22 +11:00
d67470a6e1
Add MeSH triples.
2023-02-13 14:24:49 -05:00
4ae0dfe8f4
rendering fixes
2023-02-13 20:29:56 +11:00
ccb5004766
fix issues with URL regex
2023-02-13 11:07:11 +11:00
a72ccaa0ed
Merge branch 'rdf-wg-r5' into rdf-wg-r5-with-generated
2023-02-10 12:43:35 -05:00
a547458274
Update loinc namespace.
2023-02-10 12:43:15 -05:00
bd424e7b60
fixes after more testing
2023-02-10 16:18:33 +11:00
11c887edc5
FHIR-34417: implementations for comparable(), highBoundary(), lowBoundary()
2023-02-10 10:02:40 +11:00
92cae24b1b
Add generated RdfParser code.
2023-02-08 14:09:01 -05:00
ba731b0051
Fix R5 loading problem
2023-02-07 09:53:51 +10:00
1d4f1e9d90
fix bug with duplicate value in getResourceNames()
2023-02-06 05:38:02 +11:00
e4925ea762
minor fixes for extension rendering
2023-02-03 18:42:05 +11:00
2628f6fac1
FHIRPath changes for as - case and singleton issues
2023-02-03 12:11:53 +11:00
f7ad38cc34
fix type of issue source extension
2023-02-02 16:39:53 +11:00
d596a6c343
Use leading underscore for properties with objects with modifier extensions.
2023-02-01 19:49:24 -05:00
12bf57886f
For resources with a modifierExtension, use a leading underscore for the rdf:type.
2023-02-01 13:05:47 -05:00
4a79e89f62
Merge remote-tracking branch 'origin/master'
2023-02-01 14:49:19 +11:00
2cc8ff5e23
extension related validation fixes
2023-02-01 14:49:14 +11:00
61e63b128a
Enhancements to StructureMap transform to support logical models as source and value set lookup ( #1092 )
...
* implement resolveValueSet from AHDIS Matchbox
* get SD from map source type, set logical model
* test for getSourceResourceFromStructureMap DefinitionException
* test resolveValueSet
* test transform logical source
* fix formatting
2023-01-31 16:56:02 -05:00
69ce2b45f2
Output lists in examples using RDF lists. Don’t output fhir:index.
2023-01-31 14:11:29 -05:00
7ad4bd62c6
fix for NPE rendering resources
2023-01-31 07:23:12 +11:00
d859e0b4bd
Temporary Support for MedicationStatement in R5 (going to be renamed again)
2023-01-31 07:22:33 +11:00
890971d110
Output type triples for value[x] nodes. Use simple property names.
2023-01-27 17:35:36 -05:00
00d1ab3517
Use fhir:v for literal values in examples.
2023-01-22 19:14:49 -05:00
b7576dee79
Don’t output ontology import declaration in examples.
2023-01-22 19:14:08 -05:00
Grahame Grieve
Grahame Grieve
dotasek
James Agnew
Amir Toosi
Michael Lawley
Deepak Sharma
Jim Balhoff
dksharma
Jose Costa Teixeira
Neelima Karipineni