Commit Graph

712 Commits

Author SHA1 Message Date
markiantorno 2c8db93787 Updating version to: 5.6.48-SNAPSHOT and incrementing test cases dependency. 2022-05-27 17:24:16 +00:00
markiantorno 567a9b2ce7 Release: v5.6.47
## Validator Changes

* Significant improvement in performance of validation (10-100 fold for simple resources)
* Add output tracker to trask progress of validation (Validate %R against %P..........20..........40..........60..........80.........|)
* Alter per-1 to handle different precision on start/end
* Add support for a -jurisdiction parameter, preparing for jurisdictionally specific constraints in profiles
* Fix bug in snapshot generation where type slices on a mandatory element were all marked as mandatory
* Add warnings when potential matches are found when performing reference resolution in bundles

## Other code changes

* extend FHIRPath to support lowBoundary(), highBoundary() and precision()
* Fix for inefficiency in StructureMap engine
* Update version of PubPack used by the IGPublisher
* Handle scope on TestScript R4 <-> r5 conversion
* Fix bug converting extension context = Resource (R4 <-> R5 conversion)
* Update VSAC importer for changes to VSAC FHIR authorization
* Fix broken links in profile comparison due to cross version issues
***NO_CI***
2022-05-27 16:52:13 +00:00
markiantorno 3ab828c381 Updating version to: 5.6.47-SNAPSHOT and incrementing test cases dependency. 2022-05-12 10:35:09 +00:00
markiantorno eca2fa5a5c Release: v5.6.46
## Validator Changes

* Trim unknown resource types when pre-adopting cross version extensions with type=Reference

## Other code changes

* Package Client: Get Packages by Dependency
* Snapshot Generator (R4b/R5): Fix generation of complex extension snapshot + improve rendering
* New tests for StructureMap execution
***NO_CI***
2022-05-12 10:18:11 +00:00
markiantorno a4fd92633d Updating version to: 5.6.46-SNAPSHOT and incrementing test cases dependency. 2022-05-06 01:02:54 +00:00
markiantorno f2134e9643 Release: v5.6.45
## Validator Changes

* Support IGs #current where main instead of master

## Other code changes

* Add id to Profile CSVs
***NO_CI***
2022-05-06 00:29:32 +00:00
markiantorno 264e79bc24 Updating version to: 5.6.45-SNAPSHOT and incrementing test cases dependency. 2022-05-05 01:29:36 +00:00
markiantorno 5801daeb08 Release: v5.6.44
## Validator Changes

* Handle invalid HTTP responses better when accessing packages

## Other code changes

* Fix various rendering NPEs
***NO_CI***
2022-05-05 01:09:45 +00:00
markiantorno 6df50d482b Updating version to: 5.6.44-SNAPSHOT and incrementing test cases dependency. 2022-04-28 02:39:13 +00:00
markiantorno 3fffad10e3 Release: v5.6.43
## Validator Changes

* fix problem with non-new data types on xver extensions
* enable -extension parameter for validator

## Other code changes

* Fix bug when converting resolved clinical status for allergy intolerance
***NO_CI***
2022-04-28 02:20:19 +00:00
markiantorno 5fc2e9d6ec Updating version to: 5.6.43-SNAPSHOT and incrementing test cases dependency. 2022-04-23 14:25:48 +00:00
markiantorno 4f5aa8754c Release: v5.6.42
## Validator Changes

* Fix invalid FHIR version bug when loading IGs with explicit FHIR version

## Other code changes

* Fix reverse references in GraphQL searches
* Regenerate R4B code for candidate final release (not quite final yet)
* Various minor fixes for bugs found doing R4B finalization (wildcard types, version difference comparisons)
***NO_CI***
2022-04-23 14:06:50 +00:00
Grahame Grieve b47b0653c4 moving FHIRPublication 2022-04-23 23:18:23 +10:00
dotasek 1645982389
Fix for issues/766 - reverse references with _history in GraphQL (#790)
* Create and use getIdPart

* Add tests and changes for dstu3, r4, r4b, and r5

* Update get/set Id javadoc

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-04-22 18:06:24 -04:00
Grahame Grieve fa92f85f3c Merge remote-tracking branch 'origin/master' 2022-04-22 07:36:53 +10:00
Grahame Grieve c58516ce44 remove references to c:\temp 2022-04-20 09:59:30 +10:00
markiantorno 6328230f9f Updating version to: 5.6.42-SNAPSHOT and incrementing test cases dependency. 2022-04-12 04:03:54 +00:00
markiantorno 8785babf24 Release: v5.6.41
## Validator Changes

* Handle reslicing within the same profile
* Fix up wrong handling of context on exists() in FHIRPath
* Add hints to profiles around behavior of pattern on repeating elements
* Ignore all tooling extensions when validating
* support specifying an alternative version when loading source using -ig parameter
* Don't validate Bundle.entry.fullUrl as a reference to some other content

## Other code changes

* Improved output for unit test comparisons
* Fix conversion issues around Base64Binary
* Fix for R4/R5 DataRequirements conversion for DeviceUsage
* Add AdditionalBindings Rendering (draft)
* Display all designations when rendering ValueSets
* Fix bug where expansions have empty objects some times
* Fix R4B Snapshot generation
* Enable Linking to fragment CodeSystems
***NO_CI***
2022-04-12 03:31:27 +00:00
dotasek a8da416ee3 Fix xml test + add unit tests 2022-04-11 14:57:10 -04:00
dotasek 2181cb14d5 Change tests to xml + fix breaking test 2022-04-11 14:10:53 -04:00
markiantorno 87fed0cfc8 Updating version to: 5.6.41-SNAPSHOT and incrementing test cases dependency. 2022-03-30 23:21:31 +00:00
markiantorno f80a28816c Release: v5.6.40
## Validator Changes

* Add further clarification to Value set imports warning message

## Other code changes

* Consistent use of string values for primitive type conversions
* Fix problem with generated NPM Packages
* Fix URls when processing markdown while generating snapshots
* Default output to console, with additional output available via -debug option in CLI.
* Bump jackson-databind version to fix security vulnerability.
***NO_CI***
2022-03-30 23:05:39 +00:00
dotasek 6e45dd522e Merge remote-tracking branch 'origin/master' into dotasek-primitivetype-conversion-via-stringvalue 2022-03-18 14:09:12 -04:00
markiantorno b075c5695f Updating version to: 5.6.40-SNAPSHOT and incrementing test cases dependency. 2022-03-18 04:05:44 +00:00
markiantorno e053d5a260 Release: v5.6.39
## Validator Changes

* no changes
* Add messageid to OperationOutcome from Validation
* Add support for new rules around value set interpretation with multiple imported value sets (https://jira.hl7.org/browse/FHIR-25179)

## Other code changes

* Fix for FHIRPathEngine.funcReplaceMatches() incorrectly returning Boolean in DSTU2 & DSTU3
* Fix NPE Processing missing markdown in definitions when generating snapshots
* add support for .matchesFull() and fix .matches() in FHIRPath
* Fix core package identification when loading new R5 core packages
***NO_CI***
2022-03-18 03:46:59 +00:00
dotasek b5b43836eb Add tests and changes for Base64Binary 2022-03-16 12:20:58 -04:00
dotasek 9903d15ecc Add tests for setValueAsString and contructor precision checking 2022-03-15 17:47:23 -04:00
dotasek 1a7e076479 Move precision checking code to setValueAsString 2022-03-15 16:49:51 -04:00
markiantorno 8f5db15937 Updating version to: 5.6.39-SNAPSHOT and incrementing test cases dependency. 2022-03-14 21:48:39 +00:00
markiantorno 9ad69aca53 Release: v5.6.38
## Validator Changes

* no changes

## Other code changes

* Fix for FHIRPathEngine.funcReplaceMatches() incorrectly returning Boolean in DSTU2 & DSTU3
***NO_CI***
2022-03-14 21:32:32 +00:00
markiantorno 260d8474bf issue_761 fix 2022-03-14 11:27:18 -04:00
markiantorno e4ce145a0b Updating version to: 5.6.38-SNAPSHOT and incrementing test cases dependency. 2022-03-11 03:21:07 +00:00
markiantorno e86c9afc7a Release: v5.6.37
## Validator Changes

* fix handling of xver extensions with choice sub-extensions
* validate consistency of extension modifier flag with extension use in a profile

## Other code changes

* more presenting extensions when rendering.
* Get package id from 'package' field when 'npm-package' unavailable
* Ignore META-INF contents from other dependencies while building Validator jar
* Fix to r5 TestingUtilities to allow NarrativeGenerationTests to pass.
* fix handling to xver extensions generating snapshots
***NO_CI***
2022-03-11 03:04:43 +00:00
markiantorno 4909286a4b Updating version to: 5.6.37-SNAPSHOT and incrementing test cases dependency. 2022-02-26 05:00:46 +00:00
markiantorno 17bf21ecf8 Release: v5.6.36
## Validator Changes

* No changes

## Other code changes

* fix expansions where inactive = false (was wrongly including inactive codes)
***NO_CI***
2022-02-26 04:42:17 +00:00
dotasek f2e9f1247b Add assertions to test case 2022-02-25 13:11:24 -05:00
dotasek baac4ac1a8 Fix + initial test 2022-02-25 11:25:27 -05:00
markiantorno 9e693b6a03 Updating version to: 5.6.36-SNAPSHOT and incrementing test cases dependency. 2022-02-19 22:00:05 +00:00
markiantorno 685ea98d37 Release: v5.6.35
## Validator Changes

* no changes

## Other code changes

* fix various rendering issues from core spec
***NO_CI***
2022-02-19 21:28:34 +00:00
markiantorno 73baca035e Updating version to: 5.6.35-SNAPSHOT and incrementing test cases dependency. 2022-02-16 05:52:52 +00:00
markiantorno edd2c43e64 Release: v5.6.34
## Validator Changes

* Improve code validation error when value set can't be supported on tx.fhir.org
* Hide error about regex in core package

## Other code changes

* Fix wrong URL links in processed markdown
* Don't let txCache errors stop the process
* Fix broken links in questionnaire +
***NO_CI***
2022-02-16 05:32:34 +00:00
markiantorno 1d02e04edd Updating version to: 5.6.34-SNAPSHOT and incrementing test cases dependency. 2022-02-15 11:21:29 +00:00
markiantorno cf7415b33e Release: v5.6.33
## Validator Changes

* no changes

## Other code changes

* Fix error access experimental on canonical
***NO_CI***
2022-02-15 11:00:55 +00:00
markiantorno e1613a7087 Updating version to: 5.6.33-SNAPSHOT and incrementing test cases dependency. 2022-02-14 06:57:10 +00:00
markiantorno 4a8aeda4e9 Release: v5.6.32
## Validator Changes

* no changes

## Other code changes

* Fix NPE error in Patient renderer
***NO_CI***
2022-02-14 06:25:49 +00:00
markiantorno 4ab3fea400 Updating version to: 5.6.32-SNAPSHOT and incrementing test cases dependency. 2022-02-14 01:27:51 +00:00
markiantorno 04bb17783e Release: v5.6.31
## Validator Changes

* accept regex on ElementDefinition and ElementDefinition.type, and an error for regex on ElementDefintion.type (though core packages have it on the wrong place)
* fix handling of cross-version extensions on choice elements
* fix OID validation (accept 1.3.88 GTIN OID)
* only consider bindable types when checking for multi-type bindings

## Other code changes

* Fix definitions in ListResource ("List" not "ListResource")
* introduce fhir-tools-settings.conf (see https://confluence.hl7.org/display/FHIR/Using+fhir-tool-settings.conf)
* Rendering fixes & improvements for Questionnaire and Patient and partial dates
* improvements to relative link handling in markdown when generating snapshots
* updates to package tools for changes to package.json#type (see https://confluence.hl7.org/pages/viewpage.action?pageId=35718629#NPMPackageSpecification-Packagemanifest)
* fix semver handling for tags in versions
* Bump mockito and bytebuddy versions for Java 17 compatibility & fix Kotlin ref
***NO_CI***
2022-02-14 01:08:37 +00:00
Grahame Grieve 6310b1158e #722 fix ListResource name misuse 2022-02-13 08:29:01 +11:00
dotasek f6d3139461 Clean up duplicate entries for httpclient in pom.xml 2022-02-10 13:44:54 -05:00
markiantorno 045299ae7a Updating version to: 5.6.31-SNAPSHOT and incrementing test cases dependency. 2022-02-07 15:56:51 +00:00
markiantorno 7ee476a9b6 Release: v5.6.30
## Validator Changes

* no changes

## Other code changes

* Use builders for SimpleWorkerContext and ValidationEngine to enforce initialization order for caches and capabilities
***NO_CI***
2022-02-07 15:07:54 +00:00
dotasek 0e3e410ea1 Merge branch 'master' into simpleworkercontextbuilder 2022-02-04 09:50:42 -05:00
markiantorno 703f907289 Updating version to: 5.6.30-SNAPSHOT and incrementing test cases dependency. 2022-02-03 23:15:06 +00:00
markiantorno 9a89045bac Release: v5.6.29
## Validator Changes

* no changes

## Other code changes

* Fix package location for CacheVerificationLogger
***NO_CI***
2022-02-03 22:42:27 +00:00
dotasek 847ede5f88 Refactor SimpleWorkerContext and ValidationEngine 2022-02-01 15:28:19 -05:00
markiantorno c41fcf9fa9 Updating version to: 5.6.29-SNAPSHOT and incrementing test cases dependency. 2022-02-01 02:57:54 +00:00
markiantorno fe073b6a8a Release: v5.6.28
## Validator Changes

* no changes
* Add ability to [compile a map file to a StructureDefinition](https://confluence.hl7.org/display/FHIR/Using+the+FHIR+Mapping+Language#UsingtheFHIRMappingLanguage-runtransformsjavavalidator)
* Add knowledge of additional R5 extensions for StructureDefinitions
* Fix problem validating extension context on choice types
* Add hint when binding found on element with multiple types
* Fix validator to guess system on all uses of code (not just most)

## Other code changes

* Use cached terminology server responses for unit and integration tests.
* Add more HTTP logging
* Clean up various issues with graphQL and polymorphic elements
* Add better support for date/time rendering
* Significant speed improvement for terminology caching
***NO_CI***
2022-02-01 02:36:54 +00:00
Grahame Grieve cae92c8621
Merge pull request #727 from hapifhir/ja_20220130_graphql_cleanup
Updates to GraphQL
2022-02-01 11:49:10 +11:00
jamesagnew 846866472b Updates to GraphQL 2022-01-30 17:04:10 -05:00
dotasek 09ddd964ff Merge remote-tracking branch 'origin/master' into tx-server-cache-analysis 2022-01-21 17:39:51 -05:00
markiantorno f69a30421f Updating version to: 5.6.28-SNAPSHOT and incrementing test cases dependency. 2022-01-21 21:43:26 +00:00
markiantorno 90008b7744 Release: v5.6.27
## Validator Changes

* no changes

## Other code changes

* Fix unnecessary JsonParser/XmlParser class load
***NO_CI***
2022-01-21 21:12:00 +00:00
markiantorno 8818acfbf8 Updating version to: 5.6.27-SNAPSHOT and incrementing test cases dependency. 2022-01-21 16:20:40 +00:00
markiantorno b82cc42663 Release: v5.6.26
## Validator Changes

* no changes

## Other code changes

* Avoid unnecessary JsonParser/XmlParser class load
***NO_CI***
2022-01-21 16:02:59 +00:00
dotasek 4826424499 Make additional caches to cover NativeHostService and ValidationService 2022-01-19 18:36:39 -05:00
dotasek 0a3e9d3f31 Merge branch 'master' into tx-server-cache-analysis 2022-01-18 16:10:21 -05:00
markiantorno 15fcc4607e Updating version to: 5.6.26-SNAPSHOT and incrementing test cases dependency. 2022-01-17 22:42:22 +00:00
markiantorno 4b808f140c Release: v5.6.25
## Validator Changes

* no changes

## Other code changes

* fix bug where generated packages have files in the wrong places
* fix inclusion of Java constants in CLI help text.
* fix bug on `-compile` output when using 'current' version.
***NO_CI***
2022-01-17 22:24:48 +00:00
markiantorno 7823945213 Updating version to: 5.6.25-SNAPSHOT and incrementing test cases dependency. 2022-01-17 11:31:30 +00:00
markiantorno c2bcb08855 Release: v5.6.24
## Validator Changes

* No changes to the validator

## Other code changes

* Improved rendering for value sets
***NO_CI***
2022-01-17 11:13:36 +00:00
markiantorno f368b021e3 Updating version to: 5.6.24-SNAPSHOT and incrementing test cases dependency. 2022-01-14 04:30:14 +00:00
markiantorno a536ceba7f Release: v5.6.23
## Validator
* changes to profile comparison based on discussion at Jan 2022 connectathon
* fix FHIRPath handling for incomplete FHIRPath expressions

## Other code changes
* fix markdown related dependencies
* fix NPE in Utilities.pathURL()
* fix logging problem in tx server logging
* fix problem caching value sets during validation
* fix NPE setting locale based on canonical jurisdiction
* Improve rendering for Quantity/Range + return display when validating for rendering purposes

***NO_CI***
2022-01-14 03:58:44 +00:00
dotasek 6e0b14b0b6 Merge branch 'master' into tx-server-cache-analysis 2022-01-13 09:46:45 -05:00
markiantorno b08691b425 Updating version to: 5.6.23-SNAPSHOT and incrementing test cases dependency. 2022-01-11 00:07:58 +00:00
markiantorno 8a933094b1 Release: v5.6.22
* fix bug for NullPointerException in Bundle convertors when resource is not available.
* fix Java locale backward compatibility in surefire
***NO_CI***
2022-01-10 23:53:00 +00:00
dotasek 7ee5d0c5e4 Merge remote-tracking branch 'origin/master' into tx-server-cache-analysis 2022-01-04 13:23:32 -05:00
markiantorno 13bc0d73ca Updating version to: 5.6.22-SNAPSHOT and incrementing test cases dependency. 2021-12-28 17:45:19 +00:00
markiantorno 0394b96b14 Release: v5.6.21
* Restored missing search parameter constants for R5 model classes
***NO_CI***
2021-12-28 17:28:47 +00:00
markiantorno 4a8d66bd89 Updating version to: 5.6.21-SNAPSHOT and incrementing test cases dependency. 2021-12-23 00:04:24 +00:00
markiantorno 3523d38052 Release: v5.6.20
## Validator Changes

* fix bug looking for contained resources inside bundles when validating resources using conformsTo()
* fix problems validating canonical reference profile types

## Other code changes

n/a
***NO_CI***
2021-12-22 23:46:57 +00:00
markiantorno 2d2000b009 Updating version to: 5.6.20-SNAPSHOT and incrementing test cases dependency. 2021-12-22 20:12:54 +00:00
markiantorno 6bfb964c28 Release: v5.6.19
## Validator Changes:

* ignore canonical resources found in core examples packages
* get .ofType() working in discriminators (round #1!)
* fix bug checking enableWhen - ignoring items in answers
* Improved Error messages validating bundle entries

## Other Code Changes

* Improve rendering of uris that point to known resources
* Fix wrong reference rendering questionnaire
* Fix rendering of QuestionnaireResponses - render items in answers properly
* Improve Error message when snapshot can't be generated
* fix up support for R5
***NO_CI***
2021-12-22 19:57:14 +00:00
markiantorno 66ab13dba7 Updating version to: 5.6.19-SNAPSHOT and incrementing test cases dependency. 2021-12-21 22:32:14 +00:00
markiantorno 4e3bde76e9 Release: v5.6.18
## Validator

* Allow both -output and -output-style parameters (output-style applies to output now) + add csv output style
* Implement the ```-level``` parameter
* Add support for R4B validation
* fix bug in deep profiles (profiles that don't start at the root)

## Other code changes

* Regenerate R5 code for 5.0.0-snapshot1 & many consequential changes
* Add version support for R4B and R5 (R4B code generation still to be done)
***NO_CI***
2021-12-21 22:16:52 +00:00
markiantorno a2a5ad1334 Updating version to: 5.6.18-SNAPSHOT and incrementing test cases dependency. 2021-12-18 00:00:06 +00:00
markiantorno af18cc0225 Release: v5.6.17
Validator:
* check StructureDefinition derivation consistency
* fix bug looking for contained resources inside bundles
* fix up determination criteria for IRIs on identifiers in urn:ietf:rfc:3986

Other code changes:
* Add support for new FHIR releases
* Fix escaping bug in graphQL encoder
***NO_CI***
2021-12-17 23:38:05 +00:00
dotasek a635c06af9 Updating version to: 5.6.17-SNAPSHOT 2021-12-17 15:58:22 -05:00
markiantorno f9893fbcb5 Release: v5.6.16
Validator:
* check StructureDefinition derivation consistency
* fix bug looking for contained resources inside bundles

Other code changes:
* Add support for new FHIR releases
***NO_CI***
2021-12-17 19:39:05 +00:00
dotasek 80382865de Merge branch 'master' into tx-server-cache-analysis 2021-12-15 16:49:39 -05:00
markiantorno 19087d2cb5 Updating version to: 5.6.16-SNAPSHOT and incrementing test cases dependency. 2021-12-15 16:12:57 +00:00
markiantorno 906c5c9785 Release: v5.6.15
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources

Other code changes:
* new version of FHIR (4.3.0)
* start using release indicators in FHIR versions
* various generation related fixes for the main specification build process
***NO_CI***
2021-12-15 01:31:54 +00:00
dotasek 89bc6090f2 Updating version to: 5.6.14-SNAPSHOT 2021-12-14 19:54:14 -05:00
markiantorno cf77dd9492 Release: v5.6.14
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources

Other code changes:
* new version of FHIR (4.3.0)
* start using release indicators in FHIR versions
* various generation related fixes for the main specification build process
***NO_CI***
2021-12-14 22:45:02 +00:00
dotasek d2c2220ab6 Update core version 2021-12-14 17:09:08 -05:00
dotasek 5cbdc8b49d Updating version to: 5.6.14-SNAPSHOT 2021-12-14 12:04:27 -05:00
markiantorno 6275af3a5e Release: v5.6.13
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources
***NO_CI***
2021-12-14 01:44:11 +00:00
dotasek a3fa5a52f1 Updating version to: 5.6.13-SNAPSHOT 2021-12-13 18:28:41 -05:00
markiantorno 0dab4e8e2b Release: v5.6.12
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources
***NO_CI***
2021-12-13 21:28:17 +00:00
dotasek fb66078678 Updating version to: 5.6.12-SNAPSHOT 2021-12-13 15:33:32 -05:00
dotasek cbd1394549 Merge branch 'master' into tx-server-cache-analysis 2021-12-13 15:22:21 -05:00