Commit Graph

1557 Commits

Author SHA1 Message Date
Grahame Grieve 6b1ae35ef3 * Add validator support for fhir_comments in R2/R2B (#1042) + Add validator checks around versions in extension URLs 2022-12-17 07:11:06 +11:00
Grahame Grieve 85931f9ff2 commit version-base 2022-12-17 05:56:37 +11:00
Alexey Tschudnowsky 84508415ef fixes #1040 2022-12-16 16:46:49 +01:00
Grahame Grieve bd85546820 reintroduce hack for invalid template OO json 2022-12-16 11:27:48 +11:00
Grahame Grieve 64cc3771a6 fix tests to get versions consistent 2022-12-16 08:49:14 +11:00
Grahame Grieve 415d8acc12 Add R5 snapshot3 to R4 versions enum 2022-12-16 08:48:24 +11:00
Grahame Grieve 72eae55218 fix new bug in package manager 2022-12-14 09:59:25 +11:00
Grahame Grieve 2a7136021f Allow any for resource enum 2022-12-14 07:05:39 +11:00
Grahame Grieve 38c4785236 reverse SearchParameter.base change 2022-12-14 06:29:21 +11:00
Grahame Grieve 0cf8cbcba5 fix failing tests 2022-12-13 22:17:45 +11:00
Grahame Grieve d1d391496e upgrade to new R5 release 2022-12-13 21:13:29 +11:00
Grahame Grieve 5f2317a87c Merge remote-tracking branch 'origin/master' 2022-12-09 23:34:24 +11:00
Grahame Grieve dd7ca2182a rendering improvements for deprecated codes 2022-12-09 23:28:58 +11:00
Grahame Grieve f8a0e82785 Add standards status reason 2022-12-09 20:08:51 +11:00
Grahame Grieve 771fb0ac00 Changes related to validation of document and message links 2022-12-09 11:09:17 +11:00
Grahame Grieve 73cd123234
Merge pull request #1028 from hapifhir/gg-202212-xlsx-csv
Gg 202212 xlsx csv
2022-12-07 06:11:32 +11:00
Grahame Grieve 3ee52938d6 updates for all-profiles csv and xlsx 2022-12-06 16:21:33 +11:00
dotasek a67ca99786
Profile Utilities refactor (#1027)
* Refactor 1 rename and starter comments

* Refactor 2 more renaming make method for match

* Make final what can be final

* Wrap root call to processPaths

* WIP Create ProfilePathProcessor

* Redo method scoop, move internal classes

* Use profileUtilities instance

* Finish scoop. Tests pass.

* Finish scoop for real this time.

* Encapsulate cursors

* Delete unused params

* Split path processing into two branches

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-12-05 17:32:16 -05:00
Grahame Grieve a0c28f3326 Round trip XHTML faithfully wrt empty elements 2022-12-05 13:41:31 +11:00
Grahame Grieve cacf27428e Fix rendering of Timing to not have specific verb 2022-12-05 13:41:01 +11:00
Grahame Grieve 54875fd17e fix broken link to base spec 2022-12-05 13:40:17 +11:00
Grahame Grieve 8b5cb283af suppress logging 2022-12-01 08:26:07 +11:00
Grahame Grieve d24cc6c5ee Merge remote-tracking branch 'origin/master' 2022-12-01 08:22:19 +11:00
Grahame Grieve 8d6f2ff57d
Merge pull request #1020 from ahdis/oe_r5_structuremap_cast
FHIR Mapping Language: cast support for more types #1019
2022-12-01 08:18:27 +11:00
Grahame Grieve fedfa88ffb refactor resource reference resolution to use package dependencies whereever possible 2022-12-01 08:16:00 +11:00
Grahame Grieve d79ac9ba66 Merge remote-tracking branch 'origin/master' 2022-11-30 16:34:51 +11:00
Michael Lawley 518e5559c7 fix for #1022 2022-11-30 10:20:57 +10:00
Grahame Grieve 8f9261febf #1022 - fix expected type for Code Validation parameters 2022-11-30 11:04:47 +11:00
Grahame Grieve aaa53cdfb0 #1005 - fix graphql processing issue 2022-11-30 08:32:25 +11:00
Grahame Grieve 5225640e50
Merge pull request #1018 from hapifhir/ja_20221129_graphql_type_cleanup
Correct GraphQL Schema Validation Errors
2022-11-30 08:18:35 +11:00
Oliver Egger 2d8885d4e3 FHIR Mapping Language: cast support for more types #1019 2022-11-29 22:15:02 +01:00
James Agnew 2744b5eeed Fixes to schema generator 2022-11-29 14:42:47 -05:00
dotasek 8f1f961315
Revert "BugFix: Accepts null base in all implementations of FHIRPathEngines.evaluate(Base base, String path) to match all other evaluate methods. (#1015)" (#1017)
This reverts commit ba828cbb0e.
2022-11-29 14:39:59 -05:00
Vitor Pamplona ba828cbb0e
BugFix: Accepts null base in all implementations of FHIRPathEngines.evaluate(Base base, String path) to match all other evaluate methods. (#1015) 2022-11-29 14:35:39 -05:00
Grahame Grieve 1048a483a2
Fix turtle generation (#1014)
Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
2022-11-29 11:29:04 -05:00
Grahame Grieve adfd0d26e6 Fix turtle generation 2022-11-30 01:40:07 +11:00
James Agnew 82bd4e5c25 Work on cleanup 2022-11-29 07:54:58 -05:00
Grahame Grieve 1b07d221ea Merge remote-tracking branch 'origin/master' 2022-11-28 12:28:07 -03:00
Grahame Grieve a49a82aab5 capture exception chasing references 2022-11-28 12:27:41 -03:00
Grahame Grieve 9405d0b715 Fix problems validating logical models 2022-11-28 12:27:26 -03:00
Grahame Grieve 35774955ae Produce Standards Status in tree view 2022-11-28 12:26:58 -03:00
Grahame Grieve 65863d88d1
Merge pull request #1012 from hapifhir/gg-202211-json-comments
Consistency around rendering comments in examples in IGs
2022-11-27 05:33:35 -03:00
Grahame Grieve 49f798de48 Consistency around rendering comments in examples in IGs 2022-11-26 22:24:17 -03:00
Grahame Grieve 83b2921c2e
Merge pull request #1011 from hapifhir/gg-202211-json5
update JSON parser used by validator to JSON5 parser
2022-11-26 19:22:05 -03:00
Grahame Grieve 53fb08ab19 update JSON parser used by validator to JSON5 parser 2022-11-26 18:24:29 -03:00
Grahame Grieve e189ae2b76
Merge pull request #1001 from ahdis/oe_np_with_structuremaps
fix np and index out of bound exception
2022-11-26 01:00:34 -03:00
Grahame Grieve 21bd9bf7e9 improve parsing speed for json resources 2022-11-25 22:36:51 -03:00
Grahame Grieve 8f1e6f2c59 Improve parsing speed for Json resources 2022-11-25 22:36:38 -03:00
Grahame Grieve 275d83a4c7 work around bug in template OO 2022-11-25 22:36:14 -03:00
Grahame Grieve 962f3f09ea prepare for changing the way the IG publisher generates narrative 2022-11-24 18:02:21 -03:00
Grahame Grieve 80f275ff18 upgrade to new JSON parser 2022-11-24 17:57:46 -03:00
Oliver Egger b3cc460ccd fix nullpointer exceptions 2022-11-22 16:19:16 +01:00
Grahame Grieve 6bdf3389bb fix bug missing R5 definitions in publisher 2022-11-22 06:38:01 -03:00
Grahame Grieve 74b1b7f201 fix rendering issue when reference.reference missing 2022-11-22 05:58:17 -03:00
Grahame Grieve 24331956f1 Add rule date to validation messages so new rules can be highlighted 2022-11-22 05:58:02 -03:00
Grahame Grieve 8136b00c86 work on loading speed for validator 2022-11-21 18:46:47 -03:00
Grahame Grieve 68360cb110 Fix issue handling path on content references on deeply nested content 2022-11-21 18:45:33 -03:00
Grahame Grieve 5cda3573be fix for non-breaking space usage 2022-11-20 12:27:41 -03:00
Grahame Grieve 8e3833f58a Fix broken LOINC link 2022-11-19 03:39:35 -03:00
Grahame Grieve b4d21b8263
Merge pull request #994 from hapifhir/gg-202211-xhtml-entities
Gg 202211 xhtml entities
2022-11-17 16:57:04 -03:00
Grahame Grieve 4fa05d8297 fix bug producing html entities in XHTML in resources when rendering 2022-11-17 15:21:39 -03:00
Grahame Grieve 28d107b4ae Validate XHTML entities in XML 2022-11-17 15:21:17 -03:00
dotasek 82972d5216
Add https-proxy param + fix proxy authorization header (#888)
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-11-17 11:27:21 -05:00
Grahame Grieve 47443acaf3 prepare release 2022-11-16 18:36:02 -03:00
Grahame Grieve cf7ef7218a
Merge pull request #979 from lmckenzi/NewIGHelp
Change default help location for tables
2022-11-15 07:18:13 +11:00
dotasek d724d48f89
Do remove excluded tests 2 (#988)
* WIP remove excluded tests + disable breaking test

* Fix failing test, document test cases.

* Code cleanup

The following are cherry picked from GG branch:

* Fix problem with value set validator hiding errors

* Fix issue rendering resource by name

* fix error location

Co-authored-by: dotasek <david.otasek@smilecdr.com>
Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
2022-11-14 13:30:26 -05:00
Grahame Grieve db643e8eca fix typo 2022-11-10 10:00:26 +11:00
Grahame Grieve 21b0577249 track hint about code validation 2022-11-10 05:16:10 +11:00
Grahame Grieve b7a882114d accept code/display from CLD if no code system available 2022-11-10 05:15:27 +11:00
Grahame Grieve 96218a5ce4 refactor resource narrative generation rules 2022-11-10 05:14:59 +11:00
dotasek 11c369ea09 Remove all _PLURAL labels from constants 2022-11-07 16:52:47 -05:00
dotasek 183f9ecfd2 Remove _PLURAL labels from keys 2022-11-07 16:39:40 -05:00
dotasek 6b5d184f89 Merge remote-tracking branch 'origin/master' into do-i18n-plurals 2022-11-07 14:52:40 -05:00
Hank Yang a6ba8fd67a
Fixed HL7 Validator CLI Jurisdiction Output (#980)
* Failing test

* Fixed breaking jurisdiction test

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-11-07 11:59:33 -05:00
dotasek ffec2ce1c5 Merge remote-tracking branch 'origin/master' into do-i18n-plurals 2022-11-07 09:23:36 -05:00
Lloyd McKenzie 1d9b05a27b Changed flyover for constraints to say "constraint" instead of "invariant" 2022-11-05 23:26:13 -06:00
Grahame Grieve c835201f36 Merge remote-tracking branch 'origin/master' 2022-11-06 10:16:22 +11:00
Grahame Grieve 4b0c42c832 Fix bug with jurisdiction locale in validator 2022-11-06 10:12:36 +11:00
Grahame Grieve d19ff2e1f6
Merge pull request #972 from hapifhir/do-terminology-cache-filewpipechar
Fix pipes in terminologyCache files
2022-11-06 07:04:58 +11:00
Grahame Grieve 305f93ca26 Fix broken SDC links in Q & QR rendering 2022-11-05 11:30:27 +11:00
Grahame Grieve 01411cfa6c regenerate R5 (ActivityDefinition.kind = TASK), and check synced for RDF Generation issues 2022-11-05 11:28:11 +11:00
dotasek 99bd733fe0 Update tests + fix 11073 codesystem 2022-11-03 16:33:56 -04:00
dotasek 6ecd4c70fe Parse out version for all systems in TerminologyCache files 2022-11-03 14:29:38 -04:00
dotasek fc7cd56335 Merge remote-tracking branch 'origin/master' into do-i18n-plurals 2022-11-03 13:35:40 -04:00
dotasek 74659e4648 Merge remote-tracking branch 'origin/master' into do-terminology-cache-filewpipechar 2022-11-03 12:51:19 -04:00
Grahame Grieve c49a2c0fc5 Fix link to extension style 2022-11-03 15:59:42 +11:00
Grahame Grieve 2519858dcd update logical model snapshot generation and validation 2022-11-03 15:59:22 +11:00
dotasek 16a0a08598 Parse out canonical url version + refactor 2022-11-02 16:58:28 -04:00
dotasek 8e663f3ce9 Merge branch 'master' into do-terminology-cache-filewpipechar 2022-11-02 11:08:45 -04:00
Grahame Grieve 16e21c5bbe fix bug in simple http client when no accept header is set 2022-11-02 20:57:05 +11:00
Grahame Grieve 68a3b6c808 process markdown relative references 2022-11-02 20:56:40 +11:00
Grahame Grieve c8bf2aa4e5 fix issue with contained resources not rendering 2022-11-02 20:56:17 +11:00
Grahame Grieve ca96bbfdc4 fix bug where ElementModel paths are not populated 2022-11-02 20:55:35 +11:00
Grahame Grieve 261462b348 Fix for NPE on invalid bundles 2022-11-02 08:52:02 +11:00
Grahame Grieve 1ae7093eef #934 Parameters object's getParameter(String theParameterName) is misnamed 2022-11-02 08:51:17 +11:00
dotasek 5558f0458f Refactor 2022-10-31 14:53:50 -04:00
dotasek 942777da11 Fix token name for code system 2022-10-31 14:27:03 -04:00
dotasek 21037e2cdf Failing test 2022-10-31 14:22:46 -04:00
dotasek 269680608f Merge master 2022-10-31 09:50:26 -04:00
Grahame Grieve 5116536617 Finish CDS hooks extension validation 2022-10-29 19:18:19 +11:00