Commit Graph

846 Commits

Author SHA1 Message Date
markiantorno 2821883888 Release: v5.3.8
* adding fix for R4 when target profile is a reference, and that reference returns an empty list of target profiles
***NO_CI***
2021-04-01 18:25:42 +00:00
markiantorno 91e31e813f Updating version to: 5.3.8-SNAPSHOT and incrementing test cases dependency. 2021-03-29 08:04:39 +00:00
markiantorno 671a3bbfe9 Release: v5.3.7
Version Conversion:
* add test for Observation conversion from 10 to 40
* add procedures conversion form dstu2 to r4
* add medication conversion from dstu2 to r4
* add copy of extension field for Enumeration fieldtype by Resource.copy
* add default value to Medication Request during conversion from dstu2 to r4
* fix R2B/R5 ElementDefinition.type.code conversion

Other:
* minor fixes in code generators for R4B
* Fix null pointer exception in validator validating language codes
* fix issue with validating fixed values for primitive elements
* add utility to unzip file
***NO_CI***
2021-03-29 07:37:14 +00:00
Grahame Grieve 032b81a38e fix issue with validating fixed values for primitive elements 2021-03-29 17:26:12 +11:00
Grahame Grieve 494137f322 ping bild 2021-03-22 14:14:54 +11:00
Grahame Grieve 1ed13f2a2e add doco 2021-03-22 10:17:48 +11:00
Grahame Grieve f43769c6e5 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2021-03-22 08:57:21 +11:00
markiantorno c119fdfa42 Updating version to: 5.3.7-SNAPSHOT and incrementing test cases dependency. 2021-03-19 23:40:41 +00:00
markiantorno e6b2b98ff9 Release: v5.3.6
* URI type issue temporary fix for github issue #240 (QA Error related Extension.url)
***NO_CI***
2021-03-19 23:09:48 +00:00
Grahame Grieve 2d31728d4f Don't use packages.fhir.org for R2B (hack) + R2B packing tool 2021-03-19 07:50:12 +11:00
Grahame Grieve dc767031e5 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2021-03-18 09:32:30 +11:00
Tadgh 2f0677ab95 Add a builder method for fhirVersions 2021-03-17 15:55:35 -04:00
Grahame Grieve 5187fdd398 fix issues related to R4B generation 2021-03-12 06:28:56 +11:00
markiantorno 48a91c70af Updating version to: 5.3.6-SNAPSHOT and incrementing test cases dependency. 2021-03-10 15:15:06 +00:00
markiantorno 06a61930b2 Release: v5.3.5
* minor fixes in code generators for R4B
***NO_CI***
2021-03-10 14:40:44 +00:00
Grahame Grieve 7c48c0d66a
Gg 20201mar r4b 3 (#454)
* fix bug generating htmlized XML with no namespaces

* Add R4B support to FHIRVersions

* Add resource name mapping for DataRequirement

* R4B fixes

* release notes
2021-03-10 09:08:09 -05:00
Grahame Grieve 3d312a1863 fix bug generating htmlized XML with no namespaces 2021-03-06 08:57:44 +11:00
Mark Iantorno dfc59882ca
the validator front end needs these changes (#450) 2021-03-04 20:38:01 -05:00
markiantorno 0dc44571e6 Updating version to: 5.3.5-SNAPSHOT and incrementing test cases dependency. 2021-03-03 23:12:04 +00:00
markiantorno 7be165d2d2 Release: v5.3.4
* fix bug in profile validation
***NO_CI***
2021-03-03 22:40:23 +00:00
Grahame Grieve b252b56c31 fix bug in profile validation 2021-03-04 07:27:58 +11:00
Grahame Grieve 14dc86e3a2 Fix bug in profile validation 2021-03-04 07:27:11 +11:00
markiantorno 622ad5f207 Updating version to: 5.3.4-SNAPSHOT and incrementing test cases dependency. 2021-03-03 15:27:46 +00:00
markiantorno 078da2f71a Release: v5.3.3
* adding session ids to validator service
* fix R5 --> R4 conversion for ConceptMap equivalence default value
* fix issue with snapshot generation for logical models (CCDA)
* Define binding method extension
* Improve terminology validation error messages
* add additional validation on profiles around types (for logical models)
***NO_CI***
2021-03-03 14:56:38 +00:00
Grahame Grieve cd7a8d39e7 * Improve terminology validation error messages
* add additional validation on profiles around types (for logical models)
2021-03-03 13:30:58 +11:00
Grahame Grieve a51a8c003d fix issue with snapshot generation for logical models (CCDA) 2021-03-03 13:18:44 +11:00
markiantorno f08f4aec85 Updating version to: 5.3.3-SNAPSHOT and incrementing test cases dependency. 2021-02-18 23:31:07 +00:00
markiantorno 7e70adf819 Release: v5.3.2
* Rollback HAPI dependency to fix fat-jar for Validator-CLI
***NO_CI***
2021-02-18 22:57:43 +00:00
markiantorno 5cede7a6b0 Updating version to: 5.3.2-SNAPSHOT and incrementing test cases dependency. 2021-02-17 19:58:37 +00:00
markiantorno 86b0af4895 Release: v5.3.1
* add test for Observation conversion from 10 to 40
* add procedures conversion form dstu2 to r4
* add medication conversion from dstu2 to r4
***NO_CI***
2021-02-17 19:23:40 +00:00
jamesagnew 4d8b564504 Version bump to 5.3.1-SNAPSHOT 2021-02-17 07:31:19 -05:00
jamesagnew c1fca83a94 Version bump to 5.3.0 2021-02-17 06:59:11 -05:00
Lloyd McKenzie d0df12b85f Revert to current content on HAPI 2021-02-08 08:40:11 -07:00
Lloyd McKenzie b91b68d1a2 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core
# Conflicts:
#	org.hl7.fhir.convertors/pom.xml
#	org.hl7.fhir.dstu2/pom.xml
#	org.hl7.fhir.dstu2016may/pom.xml
#	org.hl7.fhir.dstu3/pom.xml
#	org.hl7.fhir.r4/pom.xml
#	org.hl7.fhir.r5/pom.xml
#	org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/conformance/ProfileUtilities.java
#	org.hl7.fhir.report/pom.xml
#	org.hl7.fhir.utilities/pom.xml
#	org.hl7.fhir.utilities/src/main/resources/Messages.properties
#	org.hl7.fhir.validation.cli/pom.xml
#	org.hl7.fhir.validation/pom.xml
#	org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/InstanceValidator.java
#	pom.xml
2021-02-08 08:22:58 -07:00
Grahame Grieve 82edacbde4
Merge pull request #434 from hapifhir/gg-2021-feb-1
Gg 2021 feb 1
2021-02-08 13:28:31 +11:00
Grahame Grieve ef3b8c1f0a Fix bug validating mime types without terminology serverBase (warning, not error)
Performance improvements in JSON metadata based parser
Add first round of supplement validation
improve error message on profile validation fail
fix NPE validating some slices
fix bug validating canonicals as part of choice data types
Adds special support for http://hl7.org/fhirpath/System.* types
fix bug matching slices in contained resources that have references to #
2021-02-08 09:40:25 +11:00
Grahame Grieve 5b8aec8a06
Merge pull request #410 from rajavpr/UnknownHostException
Fix for UnknownHostException
2021-02-08 06:56:23 +11:00
Grahame Grieve da563a6637
Merge pull request #411 from ahdis/oe_fhir-28413
[FHIR-28413]: noNamespace instead of default for Logical Models not having a namespace
2021-02-08 06:46:30 +11:00
markiantorno 82546c5764 Updating version to: 5.2.21-SNAPSHOT and incrementing test cases dependency. 2021-01-25 15:02:01 +00:00
markiantorno af05868a82 Release: v5.2.20
* Added OkHttp dependency to cli
***NO_CI***
2021-01-25 14:28:05 +00:00
markiantorno de30f3d212 Updating version to: 5.2.20-SNAPSHOT and incrementing test cases dependency. 2021-01-24 16:59:11 +00:00
markiantorno 5c4a309538 Release: v5.2.19
* added OkHttp dependency to validator to fix issue
***NO_CI***
2021-01-24 16:26:27 +00:00
markiantorno d13b5dce94 Updating version to: 5.2.19-SNAPSHOT and incrementing test cases dependency. 2021-01-21 23:50:48 +00:00
markiantorno fb6f25c24e Release: v5.2.18
* This is a test to see if triggering a change on a branch will still allow me to deploy to Sonatype
* This is a second test message
***NO_CI***
2021-01-21 22:05:34 +00:00
markiantorno b7b979dc1e upping version 2021-01-20 16:14:00 -05:00
Grahame Grieve ecc59f26a6
Merge pull request #418 from hapifhir/gg-r4b-work
Gg r4b work
2021-01-21 07:13:43 +11:00
Grahame Grieve 00410604d7 Improve validator error messages for bad json & turtle formats 2021-01-20 16:53:14 +11:00
markiantorno 8a69438532 Updating version to: 5.2.17-SNAPSHOT and incrementing test cases dependency. 2021-01-14 22:38:02 +00:00
markiantorno f815bc8fb8 Release: v5.2.16
Validation Changes:
* No change

Other code changes:
* update dependency on CQF framework
* Add primitive type factory
* minor changes to fix ContentReference issues
***NO_CI***
2021-01-14 22:02:50 +00:00
Grahame Grieve 026a958e39 fix build 2021-01-15 08:13:30 +11:00
markiantorno 564f8357d8 Release: v5.2.15
Validation Changes:
* No change

Other code changes:
* update dependency on CQF framework
* Add primitive type factory
* minor changes to fix ContentReference issues
***NO_CI***
2021-01-14 18:29:48 +00:00
Grahame Grieve 414640550e Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2021-01-14 12:21:52 +11:00
Grahame Grieve e0dabe6f33 fix profile generation issues 2021-01-14 12:21:33 +11:00
Mark Iantorno 33b55727a0
upping version to fix crash (#413) 2021-01-12 11:21:28 -05:00
Oliver Egger c16573962b noNamespace instead of default 2021-01-02 14:19:04 +01:00
rajavpr 17d375b43e
Fix for UnknownHostException
Error connecting to build server - running without build (build.fhir.org)
java.net.UnknownHostException: build.fhir.org
	at java.base/java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:220)
	at java.base/java.net.SocksSocketImpl.connect(SocksSocketImpl.java:403)
	at java.base/java.net.Socket.connect(Socket.java:608)
	at java.base/sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:285)
	at java.base/sun.security.ssl.BaseSSLSocketImpl.connect(BaseSSLSocketImpl.java:173)
	at java.base/sun.net.NetworkClient.doConnect(NetworkClient.java:182)
	at java.base/sun.net.www.http.HttpClient.openServer(HttpClient.java:474)
	at java.base/sun.net.www.http.HttpClient.openServer(HttpClient.java:569)
	at java.base/sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:265)
	at java.base/sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:372)
	at java.base/sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
	at java.base/sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1187)
	at java.base/sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1081)
	at java.base/sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
	at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1592)
	at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1520)
	at java.base/sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:250)
	at org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager.loadFromBuildServer(FilesystemPackageCacheManager.java:645)
	at org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager.checkBuildLoaded(FilesystemPackageCacheManager.java:631)
	at org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager.getPackageIdFromBuildList(FilesystemPackageCacheManager.java:593)
	at org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager.getPackageId(FilesystemPackageCacheManager.java:565)
	at org.hl7.fhir.validation.cli.services.StandAloneValidatorFetcher.resolveURL(StandAloneValidatorFetcher.java:87)
	at org.hl7.fhir.validation.ValidationEngine.resolveURL(ValidationEngine.java:1738)
	at org.hl7.fhir.validation.instance.InstanceValidator.checkPrimitive(InstanceValidator.java:1954)
2020-12-30 15:43:03 +05:30
markiantorno 3ab5444dca Updating version to: 5.2.14-SNAPSHOT and incrementing test cases dependency. 2020-12-24 05:15:27 +00:00
markiantorno 5f67b5bad0 Release: v5.2.13
Validator:
* More rules around URL validation, instead of just marking them as errors
* Don't report errors for extensible bindings when profiles apply required bindings

Other code changes:
* fix rendering issue with profile references
* only use c:\temp for logs if it's writeable
***NO_CI***
2020-12-24 04:44:49 +00:00
Grahame Grieve 3ba81328cc * More rules around URL validation, instead of just marking them as errors
* Don't report errors for extensible bindings when profiles apply required bindings
* fix rendering issue with profile references
* only use c:\temp if it's writeable
2020-12-24 13:21:30 +11:00
markiantorno 401b73c700 Updating version to: 5.2.13-SNAPSHOT and incrementing test cases dependency. 2020-12-18 13:38:06 +00:00
markiantorno fa2a8ad4e2 Release: v5.2.12
Validator:
* allow for URLs that are references to ISO standards (urn:std:)
* fix up validation of value set for code system and expansions
* fix up validation for R2B issues (value set references, profiled types)
***NO_CI***
2020-12-18 13:03:18 +00:00
Grahame Grieve c4db541d7e fix up validation for R2B issues (value set references, profiled types) 2020-12-18 22:45:39 +11:00
Grahame Grieve 836863e372 allow for URLs that are references to ISO standards (urn:std:) 2020-12-18 22:44:23 +11:00
markiantorno ff49147146 Updating version to: 5.2.12-SNAPSHOT and incrementing test cases dependency. 2020-12-15 13:19:59 +00:00
markiantorno 9084ea3881 Release: v5.2.11
Validator:
* fix bad eror message in german messages (issue 399)
* better error messages when FHIRPath discriminators are invalid
* clean up error messages

Other code changes:
* remove unnecessary (& problem causing) Fragment-Host from OSGi manifest
* move structuremap utilities to a package

***NO_CI***
2020-12-15 12:50:35 +00:00
Grahame Grieve 52fae6d285 #399: fix bad error message in german 2020-12-15 14:30:44 +11:00
Grahame Grieve e2a8581a3b improve error message for FHIRPath errors when slicing 2020-12-10 13:50:20 +11:00
markiantorno 55055fa3c4 Updating version to: 5.2.11-SNAPSHOT and incrementing test cases dependency. 2020-12-09 01:50:11 +00:00
markiantorno 0019153a26 Release: v5.2.10
Validator:
* Fix NPE reading results of batch code validation
* Validate that binding references are present, and are for value sets
* Fix output message when there's nothing to validate

Other Code Changes:
* fix for renderer on ElementModels rendering - follow contentReference
* fix for NPE rendering references to contained value setes in Questionnaires that don't resolve
* fix for NPE rendering parameters with no names
* fix for rendering bundles on ElementModels

***NO_CI***
2020-12-09 01:21:17 +00:00
Grahame Grieve 1532a038c9 Validate that binding references are present, and are for value sets 2020-12-09 10:06:20 +11:00
markiantorno c85cbf59aa Updating version to: 5.2.10-SNAPSHOT and incrementing test cases dependency. 2020-12-06 22:30:20 +00:00
markiantorno 6907a004be Release: v5.2.9
Validator:

* fix bug that meant validator was complaining abut unknown codes

Other code changes:

* fix rendering of documents
***NO_CI***
2020-12-06 22:00:23 +00:00
markiantorno 1651d3775c upping version to publish 2020-12-05 09:45:13 -05:00
markiantorno b6efb58dc8 Release: v5.2.8
Validator:

* fix bug that meant validator was complaining abut unknown codes

Other code changes:

* fix rendering of documents
***NO_CI***
2020-12-05 00:07:37 +00:00
Grahame Grieve 7de14f172e
Fix validation issues for StructureDefinitions (#396) 2020-12-04 16:11:52 -05:00
markiantorno 118c03590f Updating version to: 5.2.8-SNAPSHOT and incrementing test cases dependency. 2020-12-03 22:12:42 +00:00
markiantorno d4e5950dea Release: v5.2.7
Validator:
* Fix support for cross version extensions across the entire valdation rule set
* Improve security warnings about rogue HTML tags
* fix error messages on unknown URLs (not longer say 'not done yet')
* fix validation of profiles and target profiles in all versions (before R3 different rules)

Other code changes:
* fix error message suppression on tooling client
* Track code systems used in the context
* improve error messages when rendering bundles that are documents that aren't properly formed
* Process Markdown when rendering CapabilityStatement.rest.documentation
* Fix rendering of CanonicalResource.url

Quality of Life Improvements:
* fixed deployment issue where validator.cli and report packages were sometimes published during deployment
***NO_CI***
2020-12-03 21:36:56 +00:00
markiantorno 22e203bd13 bumping version to fix publishing issues 2020-12-03 09:45:35 -05:00
markiantorno ff00680f94 Release: v5.2.6
Validator:
* Fix support for cross version extensions across the entire valdation rule set
* Improve security warnings about rogue HTML tags
* fix error messages on unknown URLs (not longer say 'not done yet')
* fix validation of profiles and target profiles in all versions (before R3 different rules)

Other code changes:
* fix error message suppression on tooling client
* Track code systems used in the context
* improve error messages when rendering bundles that are documents that aren't properly formed
* Process Markdown when rendering CapabilityStatement.rest.documentation
* Fix rendering of CanonicalResource.url
***NO_CI***
2020-12-03 10:37:47 +00:00
Grahame Grieve 7d95b27c1f fix validation of profiles and target profiles in all versions (before R3 different rules) 2020-12-03 16:57:53 +11:00
Grahame Grieve d4b46e32bf Improve security warnings about rogue HTML tags 2020-12-03 12:56:28 +11:00
Grahame Grieve 2f69a6734c escape | in URLS for terminology service 2020-12-03 12:55:51 +11:00
markiantorno 2dff99e99b Updating version to: 5.2.6-SNAPSHOT and incrementing test cases dependency. 2020-12-01 12:33:00 +00:00
markiantorno e83853b691 Release: v5.2.5
Validator:
* Add new validation to check these words in R3+: "Except for transactions and batches, each entry in a Bundle must have a fullUrl which is the identity of the resource in the entry"

Other code changes:
* Fix bug in package loader - allow loading version with later patch if old version is missing
***NO_CI***
2020-12-01 11:58:45 +00:00
Grahame Grieve 87e8f5a36a Add new validation to check these words in R3+: "Except for transactions and batches, each entry in a Bundle must have a fullUrl which is the identity of the resource in the entry" 2020-12-01 14:52:41 +11:00
Grahame Grieve 1e16f02b48 Fix bug in package loader - allow loading version with later patch if old version is missing 2020-12-01 14:51:19 +11:00
Grahame Grieve 65a17e6bd8 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-11-30 06:53:26 +11:00
Grahame Grieve 9080a24c29 sync up 2020-11-30 06:53:15 +11:00
markiantorno 1c043b5cc5 Updating version to: 5.2.5-SNAPSHOT and incrementing test cases dependency. 2020-11-28 16:04:03 +00:00
markiantorno 9f3d6ccd4d Release: v5.2.4
* Removed logs from network calls
* Added back in help file display
* Avoiding checking ssl certs for build server, this needs to be fixed and should not be left in long term
***NO_CI***
2020-11-28 15:32:26 +00:00
Mark Iantorno 9913168321
Pay no attention to the man behind the curtain (#388)
* added back in help file, and removed network logging

* avoid checking ssl certs for build server

* fixing help file loading from cli jar
2020-11-28 09:47:19 -05:00
markiantorno 3e7bd73109 Updating version to: 5.2.4-SNAPSHOT and incrementing test cases dependency. 2020-11-27 16:34:04 +00:00
markiantorno 59843aaa49 Release: v5.2.3
Validator Changes:
* no effective changes
* fix issue for content references in versions before R3
* Add on the fly retrieval of profiles in the validator
* Fix bug where validator reported 'not done yet' for invalid contained references
* Fix for wrong reference to Any in cross version extensions

Other Code Changes:
* fix bug converting type mode in Structure Map
* fix bug converting Timing.when (issue 383)
* fix bug doing date time comparisons with seconds in FHIRPath
* Add support for instance-name and instance-description extensions
* Fix for bundle renderer trying to render resources from the wrong version

***NO_CI***
2020-11-27 16:04:33 +00:00
markiantorno 1466620418 version update so it publishes correctly. 2020-11-27 10:19:29 -05:00
Grahame Grieve d4087590bf
hopefully final prep for 5.2.2 (#387)
* Add on the fly retrieval of profiles in the validator, and fix bug where validator reported 'not done yet' for invalid contained references.

* fix loading issue for content references in versions before R3

* fix content resolution issue for versions from before 3

* Fix for bundle renderer trying to render resources from the wrong version

* Fix for wrong reference to Any in cross version extensions

* fix test case reference

* fix mistake generating snapshots around element ids

* fix tests
2020-11-27 09:20:49 -05:00
Grahame Grieve a6df87b0a4 version notes 2020-11-27 10:39:23 +11:00
Grahame Grieve 624ce59c83 Add on the fly retrieval of profiles in the validator, and fix bug where validator reported 'not done yet' for invalid contained references. 2020-11-27 10:34:43 +11:00
markiantorno 830e9e3cc4 Release: v5.2.2
Validator Changes:
* no effective changes

Other Code Changes:
* fix bug converting type mode in Structure Map
* fix bug converting Timing.when (issue 383)
* fix bug doing date time comparisons with seconds in FHIRPath
* Add support for instance-name and instance-description extensions
***NO_CI***
2020-11-26 07:41:03 +00:00
Grahame Grieve 40b644adf1 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-11-26 06:50:35 +11:00
markiantorno 7adfefa635 Updating version to: 5.2.2-SNAPSHOT and incrementing test cases dependency. 2020-11-24 16:05:34 +00:00