Commit Graph

1003 Commits

Author SHA1 Message Date
dotasek 61b9d5e8c6 Exception: useValue for Base64Binary
Use Base64Binary getValue for Base64 conversion instead of getValueAsString.
2022-03-16 16:48:05 -04:00
dotasek ad49c9aecd Rename params helper method 2022-03-16 12:33:01 -04:00
dotasek b5b43836eb Add tests and changes for Base64Binary 2022-03-16 12:20:58 -04:00
Grahame Grieve 6f69736b05 fix typo in Dicom Package 2022-03-16 08:27:44 +11:00
dotasek 1a7e076479 Move precision checking code to setValueAsString 2022-03-15 16:49:51 -04:00
dotasek 6730275277 Add tests and changes for Instant 2022-03-15 15:59:22 -04:00
dotasek 02968b9b7a Add tests and changes for DateTime conversion 2022-03-15 12:58:59 -04:00
dotasek 209a5e777b Merge remote-tracking branch 'origin/master' into dotasek-primitivetype-conversion-via-stringvalue 2022-03-15 12:36:09 -04:00
dotasek 4068db73ff WIP Add tests for Primitive Types + use getValueAsString for conversion 2022-03-15 12:35:50 -04:00
markiantorno 8f5db15937 Updating version to: 5.6.39-SNAPSHOT and incrementing test cases dependency. 2022-03-14 21:48:39 +00:00
markiantorno 9ad69aca53 Release: v5.6.38
## Validator Changes

* no changes

## Other code changes

* Fix for FHIRPathEngine.funcReplaceMatches() incorrectly returning Boolean in DSTU2 & DSTU3
***NO_CI***
2022-03-14 21:32:32 +00:00
dotasek fb8e2cfa66 WIP Start building tests 2022-03-11 17:32:09 -05:00
Lloyd McKenzie 4c82c9c738 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into Branch_685ea98d 2022-03-11 11:21:55 -07:00
Lloyd McKenzie a6faece71b Added R4B releases to the R4<->R5 conversion process
Corrected release number for R4B to be 4.3xxx rather than 4.1xxx
2022-03-11 11:16:04 -07:00
markiantorno e4ce145a0b Updating version to: 5.6.38-SNAPSHOT and incrementing test cases dependency. 2022-03-11 03:21:07 +00:00
markiantorno e86c9afc7a Release: v5.6.37
## Validator Changes

* fix handling of xver extensions with choice sub-extensions
* validate consistency of extension modifier flag with extension use in a profile

## Other code changes

* more presenting extensions when rendering.
* Get package id from 'package' field when 'npm-package' unavailable
* Ignore META-INF contents from other dependencies while building Validator jar
* Fix to r5 TestingUtilities to allow NarrativeGenerationTests to pass.
* fix handling to xver extensions generating snapshots
***NO_CI***
2022-03-11 03:04:43 +00:00
Grahame Grieve 4d492980c3
Merge pull request #758 from lmckenzi/STU3-template-issue
Fix type conversion issue in converters.txClient.TerminologyClientR3
2022-03-11 10:47:37 +11:00
Grahame Grieve 791f16a05d fix failing tests. 2022-03-10 11:18:03 +11:00
Grahame Grieve a34c33c0c0 =fix r4b tests 2022-03-10 07:43:01 +11:00
Lloyd McKenzie 65853819d3 Hit this bug when handling resource expansions for an STU3 IG. This code would never have worked, so apparently nothing called it before now. 2022-03-04 10:03:55 -07:00
markiantorno 4909286a4b Updating version to: 5.6.37-SNAPSHOT and incrementing test cases dependency. 2022-02-26 05:00:46 +00:00
markiantorno 17bf21ecf8 Release: v5.6.36
## Validator Changes

* No changes

## Other code changes

* fix expansions where inactive = false (was wrongly including inactive codes)
***NO_CI***
2022-02-26 04:42:17 +00:00
markiantorno 9e693b6a03 Updating version to: 5.6.36-SNAPSHOT and incrementing test cases dependency. 2022-02-19 22:00:05 +00:00
markiantorno 685ea98d37 Release: v5.6.35
## Validator Changes

* no changes

## Other code changes

* fix various rendering issues from core spec
***NO_CI***
2022-02-19 21:28:34 +00:00
Grahame Grieve d66c5abec0 Add UTGCaseConvertor for future reference 2022-02-19 21:40:16 +11:00
markiantorno 73baca035e Updating version to: 5.6.35-SNAPSHOT and incrementing test cases dependency. 2022-02-16 05:52:52 +00:00
markiantorno edd2c43e64 Release: v5.6.34
## Validator Changes

* Improve code validation error when value set can't be supported on tx.fhir.org
* Hide error about regex in core package

## Other code changes

* Fix wrong URL links in processed markdown
* Don't let txCache errors stop the process
* Fix broken links in questionnaire +
***NO_CI***
2022-02-16 05:32:34 +00:00
Grahame Grieve 647d3efcee Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir 2022-02-16 13:15:19 +11:00
markiantorno 1d02e04edd Updating version to: 5.6.34-SNAPSHOT and incrementing test cases dependency. 2022-02-15 11:21:29 +00:00
Grahame Grieve fd36a5b0d2 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir 2022-02-15 22:17:36 +11:00
Grahame Grieve fcd1d1494a change location of dev server 2022-02-15 22:16:50 +11:00
markiantorno cf7415b33e Release: v5.6.33
## Validator Changes

* no changes

## Other code changes

* Fix error access experimental on canonical
***NO_CI***
2022-02-15 11:00:55 +00:00
markiantorno e1613a7087 Updating version to: 5.6.33-SNAPSHOT and incrementing test cases dependency. 2022-02-14 06:57:10 +00:00
markiantorno 4a8aeda4e9 Release: v5.6.32
## Validator Changes

* no changes

## Other code changes

* Fix NPE error in Patient renderer
***NO_CI***
2022-02-14 06:25:49 +00:00
markiantorno 4ab3fea400 Updating version to: 5.6.32-SNAPSHOT and incrementing test cases dependency. 2022-02-14 01:27:51 +00:00
markiantorno 04bb17783e Release: v5.6.31
## Validator Changes

* accept regex on ElementDefinition and ElementDefinition.type, and an error for regex on ElementDefintion.type (though core packages have it on the wrong place)
* fix handling of cross-version extensions on choice elements
* fix OID validation (accept 1.3.88 GTIN OID)
* only consider bindable types when checking for multi-type bindings

## Other code changes

* Fix definitions in ListResource ("List" not "ListResource")
* introduce fhir-tools-settings.conf (see https://confluence.hl7.org/display/FHIR/Using+fhir-tool-settings.conf)
* Rendering fixes & improvements for Questionnaire and Patient and partial dates
* improvements to relative link handling in markdown when generating snapshots
* updates to package tools for changes to package.json#type (see https://confluence.hl7.org/pages/viewpage.action?pageId=35718629#NPMPackageSpecification-Packagemanifest)
* fix semver handling for tags in versions
* Bump mockito and bytebuddy versions for Java 17 compatibility & fix Kotlin ref
***NO_CI***
2022-02-14 01:08:37 +00:00
Grahame Grieve 0fa757b426 Fix markdown relative link issues + start working on additional bindings extension 2022-02-12 07:53:23 +11:00
markiantorno 045299ae7a Updating version to: 5.6.31-SNAPSHOT and incrementing test cases dependency. 2022-02-07 15:56:51 +00:00
markiantorno 7ee476a9b6 Release: v5.6.30
## Validator Changes

* no changes

## Other code changes

* Use builders for SimpleWorkerContext and ValidationEngine to enforce initialization order for caches and capabilities
***NO_CI***
2022-02-07 15:07:54 +00:00
dotasek 0e3e410ea1 Merge branch 'master' into simpleworkercontextbuilder 2022-02-04 09:50:42 -05:00
markiantorno 703f907289 Updating version to: 5.6.30-SNAPSHOT and incrementing test cases dependency. 2022-02-03 23:15:06 +00:00
markiantorno 9a89045bac Release: v5.6.29
## Validator Changes

* no changes

## Other code changes

* Fix package location for CacheVerificationLogger
***NO_CI***
2022-02-03 22:42:27 +00:00
dotasek 239c436ca5 Code cleanup 2022-02-02 10:07:13 -05:00
dotasek 847ede5f88 Refactor SimpleWorkerContext and ValidationEngine 2022-02-01 15:28:19 -05:00
markiantorno c41fcf9fa9 Updating version to: 5.6.29-SNAPSHOT and incrementing test cases dependency. 2022-02-01 02:57:54 +00:00
markiantorno fe073b6a8a Release: v5.6.28
## Validator Changes

* no changes
* Add ability to [compile a map file to a StructureDefinition](https://confluence.hl7.org/display/FHIR/Using+the+FHIR+Mapping+Language#UsingtheFHIRMappingLanguage-runtransformsjavavalidator)
* Add knowledge of additional R5 extensions for StructureDefinitions
* Fix problem validating extension context on choice types
* Add hint when binding found on element with multiple types
* Fix validator to guess system on all uses of code (not just most)

## Other code changes

* Use cached terminology server responses for unit and integration tests.
* Add more HTTP logging
* Clean up various issues with graphQL and polymorphic elements
* Add better support for date/time rendering
* Significant speed improvement for terminology caching
***NO_CI***
2022-02-01 02:36:54 +00:00
dotasek 09ddd964ff Merge remote-tracking branch 'origin/master' into tx-server-cache-analysis 2022-01-21 17:39:51 -05:00
markiantorno f69a30421f Updating version to: 5.6.28-SNAPSHOT and incrementing test cases dependency. 2022-01-21 21:43:26 +00:00
markiantorno 90008b7744 Release: v5.6.27
## Validator Changes

* no changes

## Other code changes

* Fix unnecessary JsonParser/XmlParser class load
***NO_CI***
2022-01-21 21:12:00 +00:00
markiantorno 8818acfbf8 Updating version to: 5.6.27-SNAPSHOT and incrementing test cases dependency. 2022-01-21 16:20:40 +00:00
markiantorno b82cc42663 Release: v5.6.26
## Validator Changes

* no changes

## Other code changes

* Avoid unnecessary JsonParser/XmlParser class load
***NO_CI***
2022-01-21 16:02:59 +00:00
dotasek 4826424499 Make additional caches to cover NativeHostService and ValidationService 2022-01-19 18:36:39 -05:00
dotasek 0a3e9d3f31 Merge branch 'master' into tx-server-cache-analysis 2022-01-18 16:10:21 -05:00
dotasek d9d0f22ff3 cache CapabilityStatement and TerminologyCapabilities 2022-01-18 16:09:59 -05:00
markiantorno 15fcc4607e Updating version to: 5.6.26-SNAPSHOT and incrementing test cases dependency. 2022-01-17 22:42:22 +00:00
markiantorno 4b808f140c Release: v5.6.25
## Validator Changes

* no changes

## Other code changes

* fix bug where generated packages have files in the wrong places
* fix inclusion of Java constants in CLI help text.
* fix bug on `-compile` output when using 'current' version.
***NO_CI***
2022-01-17 22:24:48 +00:00
markiantorno 7823945213 Updating version to: 5.6.25-SNAPSHOT and incrementing test cases dependency. 2022-01-17 11:31:30 +00:00
markiantorno c2bcb08855 Release: v5.6.24
## Validator Changes

* No changes to the validator

## Other code changes

* Improved rendering for value sets
***NO_CI***
2022-01-17 11:13:36 +00:00
markiantorno f368b021e3 Updating version to: 5.6.24-SNAPSHOT and incrementing test cases dependency. 2022-01-14 04:30:14 +00:00
markiantorno a536ceba7f Release: v5.6.23
## Validator
* changes to profile comparison based on discussion at Jan 2022 connectathon
* fix FHIRPath handling for incomplete FHIRPath expressions

## Other code changes
* fix markdown related dependencies
* fix NPE in Utilities.pathURL()
* fix logging problem in tx server logging
* fix problem caching value sets during validation
* fix NPE setting locale based on canonical jurisdiction
* Improve rendering for Quantity/Range + return display when validating for rendering purposes

***NO_CI***
2022-01-14 03:58:44 +00:00
Grahame Grieve ecad7cc5f8 Fix issue with comparer not rendering properly and add explicit checks around cardinality 2022-01-12 17:43:39 +11:00
markiantorno b08691b425 Updating version to: 5.6.23-SNAPSHOT and incrementing test cases dependency. 2022-01-11 00:07:58 +00:00
markiantorno 8a933094b1 Release: v5.6.22
* fix bug for NullPointerException in Bundle convertors when resource is not available.
* fix Java locale backward compatibility in surefire
***NO_CI***
2022-01-10 23:53:00 +00:00
dotasek 094a4b3462
Merge pull request #707 from hapifhir/dotasek-issue-701
Fix for #701
2022-01-07 15:57:05 -05:00
dotasek 189a7ebdfb
Update README.md
Formatting improvements. Additional links.
2022-01-05 15:54:06 -05:00
dotasek 0edcf819ea Fix format 2022-01-05 15:45:27 -05:00
dotasek 45a2516fd8 Replace readme.md with CONVERTORS.md 2022-01-05 15:43:36 -05:00
dotasek 029340b0e0 Merge readme.md into CONVERTORS.md 2022-01-05 15:42:49 -05:00
dotasek 0d07993186 Add tests 2022-01-05 12:49:28 -05:00
dotasek da95cae662 Add hasResource check to Bundle10_XX convertors 2022-01-04 17:37:45 -05:00
Grahame Grieve 89521841ac Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2022-01-02 06:25:01 +11:00
Grahame Grieve c627ec43d9 Add R4B code + update generator for R4B generation 2022-01-01 16:33:10 +11:00
markiantorno 13bc0d73ca Updating version to: 5.6.22-SNAPSHOT and incrementing test cases dependency. 2021-12-28 17:45:19 +00:00
markiantorno 0394b96b14 Release: v5.6.21
* Restored missing search parameter constants for R5 model classes
***NO_CI***
2021-12-28 17:28:47 +00:00
markiantorno 4a8d66bd89 Updating version to: 5.6.21-SNAPSHOT and incrementing test cases dependency. 2021-12-23 00:04:24 +00:00
markiantorno 3523d38052 Release: v5.6.20
## Validator Changes

* fix bug looking for contained resources inside bundles when validating resources using conformsTo()
* fix problems validating canonical reference profile types

## Other code changes

n/a
***NO_CI***
2021-12-22 23:46:57 +00:00
markiantorno 2d2000b009 Updating version to: 5.6.20-SNAPSHOT and incrementing test cases dependency. 2021-12-22 20:12:54 +00:00
markiantorno 6bfb964c28 Release: v5.6.19
## Validator Changes:

* ignore canonical resources found in core examples packages
* get .ofType() working in discriminators (round #1!)
* fix bug checking enableWhen - ignoring items in answers
* Improved Error messages validating bundle entries

## Other Code Changes

* Improve rendering of uris that point to known resources
* Fix wrong reference rendering questionnaire
* Fix rendering of QuestionnaireResponses - render items in answers properly
* Improve Error message when snapshot can't be generated
* fix up support for R5
***NO_CI***
2021-12-22 19:57:14 +00:00
markiantorno 66ab13dba7 Updating version to: 5.6.19-SNAPSHOT and incrementing test cases dependency. 2021-12-21 22:32:14 +00:00
markiantorno 4e3bde76e9 Release: v5.6.18
## Validator

* Allow both -output and -output-style parameters (output-style applies to output now) + add csv output style
* Implement the ```-level``` parameter
* Add support for R4B validation
* fix bug in deep profiles (profiles that don't start at the root)

## Other code changes

* Regenerate R5 code for 5.0.0-snapshot1 & many consequential changes
* Add version support for R4B and R5 (R4B code generation still to be done)
***NO_CI***
2021-12-21 22:16:52 +00:00
Grahame Grieve ef0afae743 More support for R4B 2021-12-22 07:31:09 +11:00
Grahame Grieve 3a33cb2174 ## Validator
* Allow both -output and -output-style parameters (output-style applies to output now) + add csv output style
* Implement the ```-level``` parameter
* Add support for R4B validation
* fix bug in deep profiles (profiles that don't start at the root)

## Other code changes
* Regenerate R5 code for 5.0.0-snapshot1 & many consequential changes
* Add version support for R4B and R5 (R4B code generation still to be done)
2021-12-21 19:53:20 +11:00
markiantorno a2a5ad1334 Updating version to: 5.6.18-SNAPSHOT and incrementing test cases dependency. 2021-12-18 00:00:06 +00:00
markiantorno af18cc0225 Release: v5.6.17
Validator:
* check StructureDefinition derivation consistency
* fix bug looking for contained resources inside bundles
* fix up determination criteria for IRIs on identifiers in urn:ietf:rfc:3986

Other code changes:
* Add support for new FHIR releases
* Fix escaping bug in graphQL encoder
***NO_CI***
2021-12-17 23:38:05 +00:00
dotasek a635c06af9 Updating version to: 5.6.17-SNAPSHOT 2021-12-17 15:58:22 -05:00
markiantorno f9893fbcb5 Release: v5.6.16
Validator:
* check StructureDefinition derivation consistency
* fix bug looking for contained resources inside bundles

Other code changes:
* Add support for new FHIR releases
***NO_CI***
2021-12-17 19:39:05 +00:00
Grahame Grieve 47dd580868 Add searchparameter analyser 2021-12-17 12:21:38 +11:00
markiantorno 19087d2cb5 Updating version to: 5.6.16-SNAPSHOT and incrementing test cases dependency. 2021-12-15 16:12:57 +00:00
markiantorno 906c5c9785 Release: v5.6.15
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources

Other code changes:
* new version of FHIR (4.3.0)
* start using release indicators in FHIR versions
* various generation related fixes for the main specification build process
***NO_CI***
2021-12-15 01:31:54 +00:00
dotasek 89bc6090f2 Updating version to: 5.6.14-SNAPSHOT 2021-12-14 19:54:14 -05:00
markiantorno cf77dd9492 Release: v5.6.14
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources

Other code changes:
* new version of FHIR (4.3.0)
* start using release indicators in FHIR versions
* various generation related fixes for the main specification build process
***NO_CI***
2021-12-14 22:45:02 +00:00
Grahame Grieve ea87f94253
Merge pull request #688 from hapifhir/gg-202112-r4b-fixes
main Build fixes: new version of FHIR (4.3.0) + transit to using rele…
2021-12-15 09:03:54 +11:00
Grahame Grieve c15e60f2c6 main Build fixes: new version of FHIR (4.3.0) + transit to using release indicators in version + fix various build issues 2021-12-15 07:28:19 +11:00
dotasek 5cbdc8b49d Updating version to: 5.6.14-SNAPSHOT 2021-12-14 12:04:27 -05:00
markiantorno 6275af3a5e Release: v5.6.13
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources
***NO_CI***
2021-12-14 01:44:11 +00:00
dotasek a3fa5a52f1 Updating version to: 5.6.13-SNAPSHOT 2021-12-13 18:28:41 -05:00
markiantorno 0dab4e8e2b Release: v5.6.12
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources
***NO_CI***
2021-12-13 21:28:17 +00:00
dotasek fb66078678 Updating version to: 5.6.12-SNAPSHOT 2021-12-13 15:33:32 -05:00
markiantorno 0211796882 Release: v5.6.11
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources
***NO_CI***
2021-12-13 18:52:29 +00:00
dotasek d9d1c5afe4 Updating version to: 5.6.11-SNAPSHOT 2021-12-13 13:01:16 -05:00
markiantorno e59194de6b Release: v5.6.10
Validator:
* fix bug in client caching for unidentified value sets
* look for codesystem definitions in local context
* fix path error in Questionnaire Response validation
* fix up r4b list of canonical resource types
* better version specific resolution of special canonical resources
***NO_CI***
2021-12-13 10:51:11 +00:00
markiantorno e310c8c1ef Updating version to: 5.6.10-SNAPSHOT and incrementing test cases dependency. 2021-12-09 22:18:07 +00:00
markiantorno 08dc513480 Release: v5.6.9
Validator:
* enforce minValue and maxValue for decimal and Quantity types
* add checks for whitespace in base64 content (warning in <R5)

Other code changes:
* Fix trailing slashes for JAVA_HOME tests
* remove relative URL prefixing
* Add delayed load resources to all resources
* Don't load resources from core examples package over other resources
* Fix count on erroneous element defintions when generating snapshots
* add version specific access to context resources
* fix error rendering lists with encounter references
* fix error rendering questionnaire answer lists
* improve rendering of version specific and targetted references
***NO_CI***
2021-12-09 21:51:38 +00:00
dotasek 2f9dda50b6 Updating version to: 5.6.9-SNAPSHOT 2021-12-09 15:57:57 -05:00
markiantorno e0b72c5731 Release: v5.6.8
Validator:
* enforce minValue and maxValue for decimal and Quantity types
* add checks for whitespace in base64 content (warning in <R5)

Other code changes:
* Fix trailing slashes for JAVA_HOME tests
* remove relative URL prefixing
* Add delayed load resources to all resources
* Don't load resources from core examples package over other resources
* Fix count on erroneous element defintions when generating snapshots
* add version specific access to context resources
* fix error rendering lists with encounter references
* fix error rendering questionnaire answer lists
* improve rendering of version specific and targetted references
***NO_CI***
2021-12-09 19:57:46 +00:00
markiantorno 714922a84b Updating version to: 5.6.8-SNAPSHOT and incrementing test cases dependency. 2021-12-06 22:35:25 +00:00
markiantorno 186b0b23b7 Release: v5.6.7
* More import updates
***NO_CI***
2021-12-06 22:04:52 +00:00
markiantorno 7e88064cfb removing unused import 2021-12-06 15:18:00 -05:00
markiantorno 5d416f7602 Updating version to: 5.6.7-SNAPSHOT and incrementing test cases dependency. 2021-12-06 19:46:52 +00:00
markiantorno 9bb4807c92 Release: v5.6.6
* Removing unused dependency as it is causing downstream errors in HAPI builds
***NO_CI***
2021-12-06 19:21:58 +00:00
markiantorno 8d873be2a3 Updating version to: 5.6.6-SNAPSHOT and incrementing test cases dependency. 2021-12-06 18:41:00 +00:00
markiantorno 113a89b13b Release: v5.6.5
* Removing IJ annotations
***NO_CI***
2021-12-06 18:13:58 +00:00
markiantorno ac8f2b6ba9 Updating version to: 5.6.5-SNAPSHOT and incrementing test cases dependency. 2021-12-03 06:14:31 +00:00
markiantorno aef3f6fffe Release: v5.6.4
* Add usesExtension to ToolingExtensions
***NO_CI***
2021-12-03 05:47:37 +00:00
markiantorno 71b7409210 Updating version to: 5.6.4-SNAPSHOT and incrementing test cases dependency. 2021-12-02 19:49:44 +00:00
markiantorno 9a5b721220 Release: v5.6.3
* more work on date time test cases
* fix date/time rendering test
* fix bug in code system handling (NPE) + add support for json test cas…
* extend policy advisor to control terminology validation + hack fixes
* fix up SHC parsing problem
* improvements to code system rendering + fix date/time rendering tests

***NO_CI***
2021-12-02 19:23:28 +00:00
dotasek 7c630b6680 Updating version to: 5.6.3-SNAPSHOT 2021-12-02 13:11:27 -05:00
markiantorno f0f49b890d Release: v5.6.2
* more work on date time test cases
* fix date/time rendering test
* fix bug in code system handling (NPE) + add support for json test cas…
* extend policy advisor to control terminology validation + hack fixes
* fix up SHC parsing problem
* improvements to code system rendering + fix date/time rendering tests

***NO_CI***
2021-12-02 16:52:05 +00:00
Grahame Grieve 7f5a1d95cc extend policy advisor to control terminology validation + hack fixes for problems in R4B 2021-11-30 10:57:56 +11:00
Grahame Grieve 93d266b363 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2021-11-29 16:11:23 +11:00
Grahame Grieve 162cf6f049 fix package type 2021-11-29 16:08:49 +11:00
markiantorno 79a6b81e10 Updating version to: 5.6.2-SNAPSHOT and incrementing test cases dependency. 2021-11-26 15:21:24 +00:00
markiantorno 9717d321b4 Release: v5.6.1
* Validation process now has the option to control level of validation on both references and contained resources,
through the addition of two new interfaces, this is reflected in the new fields I added in fire test cases
(see https://github.com/FHIR/fhir-test-cases/pull/101)
* Improve output for describeSize Utility unit tests.
* Fix logging of requests for dstu3
***NO_CI***
2021-11-26 14:55:52 +00:00
markiantorno 1ac0e90c07 Updating version to: 5.6.1-SNAPSHOT and incrementing test cases dependency. 2021-11-22 21:58:23 +00:00
markiantorno 54fcb8dcab Release: v5.6.0
Validator:
* no changes

Other code changes
* Bumping version to reflect current HAPI version
* fix bug in renderer rendering R3 resources

***NO_CI***
2021-11-22 21:32:27 +00:00
dotasek 0b441d3b30 Restore version after failed build 2021-11-22 15:57:23 -05:00
markiantorno f6b4cf5c45 Release: v5.5.16
Validator:
* no changes

Other code changes
* Bumping version to reflect current HAPI version
* fix bug in renderer rendering R3 resources

***NO_CI***
2021-11-22 18:54:45 +00:00
dotasek 13004b85cc Bumping version to reflect current HAPI version 2021-11-22 10:35:17 -05:00
markiantorno d799fcdf27 Release: v5.5.16
Validator:
* no changes

Other code changes
* fix bug in renderer rendering R3 resources
***NO_CI***
2021-11-22 12:00:35 +00:00
markiantorno f80b0984e1 Updating version to: 5.5.16-SNAPSHOT and incrementing test cases dependency. 2021-11-22 00:22:18 +00:00
markiantorno ed4ef0a2c3 Release: v5.5.15
Validator:
* fix processing of modifier extensions and cross-version modifier extensions

Other changes:
* improvements to data types rendering based on new test cases (URLs, Money, Markdown)
* add locale to rendering context, and fix up timezone related rendering based on locale
***NO_CI***
2021-11-21 23:56:27 +00:00
Grahame Grieve 41b7a0566c fix processing of modifier extensions and cross-version modifier extensions 2021-11-21 19:37:05 +11:00
markiantorno 0a8334e543 Updating version to: 5.5.15-SNAPSHOT and incrementing test cases dependency. 2021-11-18 05:00:53 +00:00
markiantorno 601863b765 Release: v5.5.14
* fix bug generating CapabilityStatement Narratives
***NO_CI***
2021-11-18 04:28:59 +00:00
markiantorno 2cc3d2a1e2 Updating version to: 5.5.14-SNAPSHOT and incrementing test cases dependency. 2021-11-18 02:23:28 +00:00
markiantorno 2be62cd496 Release: v5.5.13
Validator:
* Check for using CodeSystem not ValueSet in a value set binding
* remove verbose logging statements

Other code Changes:
* Render Expressions + supported profiles in CapabilityStatements
* Fix NPE rendering date with no value (only extension)
* Fix NPEs rendering code system properties
* Date tracking in new Terminology Cache
* Define Extensions for contained resources in IGs
***NO_CI***
2021-11-18 01:54:52 +00:00
dotasek cccf1cebae
Update maven config and tests to allow Java 8, 11 and 17 builds (#653)
* Updates to enable Java 8, 11, and 17 builds

* Set surefire args according to profile + update jacoco verison

* Add comments for surefire profile args.

* Temporarily skip failing test

* Object based parameters ***NO_CI***

* Cleanup skipped test, move new pipeline codo

* Update validator_test_case_version
2021-11-16 09:26:53 -05:00
markiantorno d483a7dbc3 Updating version to: 5.5.13-SNAPSHOT and incrementing test cases dependency. 2021-11-13 22:03:00 +00:00
markiantorno 86eb372965 Release: v5.5.12
Code changes:
* remove erroneous logging to c:\temp
***NO_CI***
2021-11-13 21:33:11 +00:00
markiantorno 24efd996e0 Updating version to: 5.5.12-SNAPSHOT and incrementing test cases dependency. 2021-11-11 06:51:17 +00:00
markiantorno 31e05f39fa Release: v5.5.11
Validator Changes
* Add warning about resources not linked to in bundles
* Fix up support for pre-adopting R5 extensions

Other Code Changes
* Updating client logger to log both req and resp
* Refactoring of converter loader and misc packages.
* rework all HTTP access through a single access point (todo: refactor this to use okhttp)
* Improvements to rendering for IG publication (including fixing broken links)
* fix NPE in QuestionnaireRenderer
* Move tx-cache management to tx.fhir.org instead of git
* fix concept map rendering
***NO_CI***
2021-11-11 06:24:42 +00:00
Grahame Grieve 5a33d5c15a merge conflicts + rework rendering + gather all HTTP access to SimpleHTTPClient + add TerminologyCacheManager 2021-11-09 16:24:21 +11:00
Grahame Grieve 1aae6c8c76 rework HTTP client - all client calls route through SimpleHTTPClient + define CommonPackages infrastructure 2021-11-09 11:38:25 +11:00
Grahame Grieve d91b26e69b Add getServerVersion to tooling client 2021-11-09 06:13:18 +11:00
dotasek 20989776db
Convertor refactor iii (#635)
* Move loaders to own packages

* Move inner loader classes up one level

* Use lombok annotaions for BaseLoaderX classes

* Move ADLImporter

* Use lombok for ADLImporter inner classes

* Move inner ADLImporter classes up one level

* Move misc classes with inner classes to their own packages

* Encapsulate and add lombok to misc internal classes

* Move inner misc classes up one level

* Clean up explicit type arguments

* Revert back to master validator_test_case_version in pom.xml

* Update RELEASE_NOTES.md

Co-authored-by: David Otasek <david.otasek@Davids-MacBook-Pro.local>
2021-11-08 12:06:51 -05:00
Grahame Grieve 5dcb4e3e37 fix dicom package builder - add dependency 2021-11-05 17:05:40 +11:00
markiantorno 52cbe69651 Updating version to: 5.5.11-SNAPSHOT and incrementing test cases dependency. 2021-11-03 04:58:39 +00:00
markiantorno 2c2fb1179a Release: v5.5.10
Validator
* Fix validation of RiskAssessment probability
* Don't check MeasureReport groups if Measure doesn't have any groups

Other code changes
* Fix generation of GraphQL schema
* remove spurious log files
***NO_CI***
2021-11-03 04:32:39 +00:00
Grahame Grieve 36ea3f5b45 whatever I really hate git 2021-11-03 10:35:47 +11:00
markiantorno ccd8567edb Updating version to: 5.5.10-SNAPSHOT and incrementing test cases dependency. 2021-10-29 21:37:57 +00:00
markiantorno 9f789edd41 Release: v5.5.9
* https://github.com/hapifhir/org.hl7.fhir.core/issues/623
* add explicit control over the User-Agent header, and make sure header…
* #328 - wrong processing of markdown URLs
* test fixes for URL handling
* fix tests
* improved validation of UUIDs
***NO_CI***
2021-10-29 21:12:02 +00:00
Grahame Grieve 1c65a9b261
Gg 202110 validation various (#634)
* add explicit control over the User-Agent header, and make sure headers flow through properly to all calls

* #328 - wrong processing of markdown URLs

* test fixes for URL handling

* fix tests

* improved validation of UUIDs

* fix test case dependency

* Add Dicom Package builder
2021-10-29 16:26:50 -04:00
Grahame Grieve fdb46024df Add Dicom Package builder 2021-10-30 05:46:22 +11:00
Grahame Grieve 53c5211033 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2021-10-29 09:19:11 +11:00
Grahame Grieve 5b9736dbff add explicit control over the User-Agent header, and make sure headers flow through properly to all calls 2021-10-23 05:56:36 +11:00
markiantorno 6f32a85d66 Updating version to: 5.5.9-SNAPSHOT and incrementing test cases dependency. 2021-10-22 01:16:56 +00:00
markiantorno 7254337c5b Release: v5.5.8
* add -output-style parameter
* handle naming system URLs when resolving URLs
* fix profile comparison
* fix tests dependency
* ping build
* more validation for canonical URLs
* fix terminology version management and caching + better error message… …
* Merge pull request #620 from EricLemieux/fix-618 …
* fix json issue, and add tests for it
* Fix Issue 618 | NPE bundle validation …
* Removing pinentry option for gpg as it breaks in ubuntu 20.04
***NO_CI***
2021-10-22 00:52:33 +00:00
markiantorno 28bdc66c64 Updating version to: 5.5.8-SNAPSHOT and incrementing test cases dependency. 2021-10-10 23:07:21 +00:00
markiantorno f450904bdb Release: v5.5.7
* NPE fixes
* Smart Health Cards support in validator
* Fix bug generating spreadsheets due to sheet name length limitations
* Implement descendent-of filter
* more NPE fixes
* add Element.removeChild
* fix issue generation snapshot and content reference, and work around …
* improve SHC validation error
* fix for NPE generating ConceptMap spreadsheet
* fix crash in IG publisher rendering illegal content
* Improve slicing error messages
* more improving error message resolving slicing
* add missing code + track prohibited / required elements (improve rend…
* fix for broken links in R4B IGs
* fix bug related to logger in FHIRToolingClient
* fix bug related to logger in context
* enable detection of whether tx server knows about value set and bette…
* make likely source URL visible outside ProfileUtilities
* fix renderers - don't make nonvalid URLs into html links + fix NPE +
* fix bug with sheetnames generating spreadsheets
* supper branches in current version of packages
* report slicing information automatically where slicing is based on pr…
* fix misleading validation message + add -ips parameter for validator
* hint not warning when it's an example questionnaire
***NO_CI***
2021-10-10 22:40:40 +00:00
Grahame Grieve 237897965b
Gg 202110 misc validation (#617)
* NPE fixes

* Smart Health Cards support in validator

* Fix bug generating spreadsheets due to sheet name length limitations

* Implement descendent-of filter

* more NPE fixes

* add Element.removeChild

* fix issue generation snapshot and content reference, and work around old erroneous binding description in R4

* improve SHC validation error

* fix for NPE generating ConceptMap spreadsheet

* fix crash in IG publisher rendering illegal content

* Improve slicing error messages

* more improving error message resolving slicing

* add missing code + track prohibited / required elements (improve rendering of IGs)

* fix for broken links in R4B IGs

* fix bug related to logger in FHIRToolingClient

* fix bug related to logger in context

* enable detection of whether tx server knows about value set and better track returned errors from tx server

* make likely source URL visible outside ProfileUtilities

* fix renderers - don't make nonvalid URLs into html links + fix NPE +

* fix bug with sheetnames generating spreadsheets

* supper branches in current version of packages

* report slicing information automatically where slicing is based on profile + fix shc support + support codesystem-properties-mode + fix value set validation on profiles + fix wrong entry point on vaildating contained resources with profiles

* fix misleading validation message + add -ips parameter for validator

* hint not warning when it's an example questionnaire
2021-10-10 17:37:02 -04:00
markiantorno df724155e0 Updating version to: 5.5.7-SNAPSHOT and incrementing test cases dependency. 2021-10-09 22:05:18 +00:00
markiantorno 04ceca78b1 Release: v5.5.6
* incrementing test case dependency
***NO_CI***
2021-10-09 21:34:22 +00:00
markiantorno c33a3b5e82 forgot to change module versions 2021-10-08 13:31:53 -04:00
markiantorno f0997bc0c0 Updating version to: 5.5.5-SNAPSHOT and incrementing test cases dependency. 2021-09-29 17:51:23 +00:00
markiantorno 6aaf495c85 Release: v5.5.4
* https://github.com/hapifhir/org.hl7.fhir.core/issues/499
* https://github.com/hapifhir/org.hl7.fhir.core/issues/602
* https://github.com/hapifhir/org.hl7.fhir.core/issues/611
***NO_CI***
2021-09-29 17:22:54 +00:00
markiantorno 3db881a93b Updating version to: 5.5.4-SNAPSHOT and incrementing test cases dependency. 2021-09-10 03:27:13 +00:00
markiantorno 6b479d16cd Release: v5.5.3
* Adding option to modify headers for http tx requests
***NO_CI***
2021-09-10 02:57:44 +00:00
markiantorno 9b37e0fdc2 bumping version because github deploy failed 2021-09-09 22:38:51 -04:00
markiantorno f72d115f0f Release: v5.5.2
* Adding option to modify headers for http tx requests
***NO_CI***
2021-09-10 01:57:53 +00:00
Mark Iantorno e5a05f5562
Terminology client headers (#599)
* wip

* adding tests for headers in client

* fix

* r4 updated httpclient

* updating http client code for r4 and dstu3

* dunno why this didn't get added before
2021-09-09 16:32:19 -04:00
markiantorno 19d255636c Updating version to: 5.5.2-SNAPSHOT and incrementing test cases dependency. 2021-09-02 15:37:47 +00:00
markiantorno 23688f54f6 Release: v5.5.1
* The release failed and we need to do a quick release to fix versioning.
***NO_CI***
2021-09-02 15:09:38 +00:00
markiantorno b36f54eb6b bumping version to fix release issues 2021-09-02 08:56:49 -04:00
markiantorno ae571d4bfb Updating version to: 1.1.68-SNAPSHOT and incrementing test cases dependency. 2021-09-02 03:52:18 +00:00
markiantorno 2bd2e3b864 Release: v1.1.67
Validator
* fix NPE bug logging terminology server calls
* fix NPE bug validating logical models
* fix problem with Type Name when validating against Logical Models
***NO_CI***
2021-09-02 03:26:20 +00:00
Grahame Grieve bcee0603e5 fix version 2021-09-02 12:20:48 +10:00
markiantorno f58cdec1c0 Updating version to: 5.4.13-SNAPSHOT and incrementing test cases dependency. 2021-09-01 04:29:12 +00:00
markiantorno 175eeeca2d Release: v5.4.12
Validator:

* Hack around erroneous R3 Invariant (ref-1)
* Add support for generating terminology spreadsheets from the command line validator
* Validate Resource.id and Element.id properly

Other Code Changes:
* Change the FHIRPath interface IEvaluationContext.resolveConstant to return List<Base> not Base (BREAKING CHANGE!)
* Binary Resource Renderer
* Spreadsheet Generation for terminology resources (org.hl7.fhir.r5.renderers.spreadsheets package)
* Fix various NPEs discovered by users
* Fix rendering of value sets that have no definition
* Mark generated narrative with a flag in user data
* return system for display when IWorkerContext.validateCode is called
***NO_CI***
2021-09-01 03:59:20 +00:00
markiantorno 99e85360d7 Updating version to: 5.4.12-SNAPSHOT and incrementing test cases dependency. 2021-08-25 23:38:16 +00:00
markiantorno 1b4c675c19 Release: v5.4.11
* Differential element fields minValue/maxValue are now correctly treated in the snapshot generation process
* Conversion context added to conversions process
* Users can now define custom behavior for CodeSystems, Extensions, BundleEntries, and Types by extending BaseAdvisor.
* Resource Conversions are now thread-safe, each using their own instance of the conversion context that is unique
* ConversionFactory classes are statically accessed, to minimize changes downstream
* I need to add more tests, there were very few to begin with, and it's my next task
* All conversion libraries and no play makes Mark a dull boy
* Exposed showMessagesFromReferences on the command line interface to support reporting validation errors on referenced types (particularly useful when validating messages & documents)
* https://github.com/hapifhir/org.hl7.fhir.core/issues/564
* https://github.com/hapifhir/org.hl7.fhir.core/issues/513
***NO_CI***
2021-08-25 23:10:46 +00:00
Tadgh 5ca6d19c69
Replace proprietary notnull with javax.annotation.Nonnull (#584)
* Replace proprietary notnull with javax.annotation.Nonnull

* wip

Co-authored-by: markiantorno <markiantorno@gmail.com>
2021-08-25 08:39:44 -04:00
Grahame Grieve 4ba9193a5e fix for #575 NPE in rendering Patient 2021-08-25 06:50:58 +10:00
markiantorno 9a66c87a05 Updating version to: 5.4.11-SNAPSHOT and incrementing test cases dependency. 2021-08-19 02:59:51 +00:00
markiantorno 0853126597 Release: v5.4.10
* Conversion context added to conversions process
* Users can now define custom behavior for CodeSystems, Extensions, BundleEntries, and Types by extending BaseAdvisor.
* Resource Conversions are now thread-safe, each using their own instance of the conversion context that is unique
* ConversionFactory classes are statically accessed, to minimize changes downstream
* I need to add more tests, there were very few to begin with, and it's my next task
* All conversion libraries and no play makes Mark a dull boy
***NO_CI***
2021-08-19 02:26:11 +00:00
Mark Iantorno 72e88cb12f
Adding proper null checks for convertor factories. (#579)
* wip

* wip

* sdjkhfakjsdhllkjsdhfsdkh
2021-08-18 21:43:39 -04:00
Mark Iantorno 58c0e216e8
Conversion library overhaul (#568)
* wip

* adding pathing to 40_50 conversion

* wip

* 30_50 and 40_50 updated to factory

* 30_40 factory

* 14_50

* 14_40

* 14_30, 10_50

* 10_40

* 10_30

* forcing non-null on VersionConvertors

* *trying* to clean up advisor code, switching from jetbrains NotNull to javax Nonnull annotation

* all calls within convertor classes should use INSTANCE access, not factory to maintain thread safety

* adding README for conversion library

* spacing

* threaded test removal

* release notes

* Update RELEASE_NOTES.md

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Update RELEASE_NOTES.md

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Update org.hl7.fhir.convertors/CONVERTORS.md

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Update org.hl7.fhir.convertors/CONVERTORS.md

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Update org.hl7.fhir.convertors/CONVERTORS.md

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-08-06 19:28:24 -04:00
markiantorno 99fcac64ac Updating version to: 5.4.10-SNAPSHOT and incrementing test cases dependency. 2021-07-15 16:29:01 +00:00
markiantorno 296ab05f10 Release: v5.4.9
* Big refactoring of conversion code. First big step in being able to add conversion context.
* https://github.com/HL7/fhir-ig-publisher/issues/295
***NO_CI***
2021-07-15 15:57:12 +00:00
Mark Iantorno aab5bd4a0f
Convertor refactor ii (#556)
* 10_30

* 10_40

* 10_50

* 14_30

* 14_40

* 14_50

* 30_40

* 40_50

* cleaningup
2021-07-07 22:41:14 -04:00
markiantorno c53cc54b96 Updating version to: 5.4.9-SNAPSHOT and incrementing test cases dependency. 2021-07-06 19:01:20 +00:00
markiantorno 1330ad7cf8 Release: v5.4.8
Fixed issue where validator fails to detect invariant issue when there are multiple profiles that use the same invariant on the same element. Also addressed issue revealed by the fix where the context resource wasn't being set properly when checking certain invariants (identified by one of the existing test cases).
***NO_CI***
2021-07-06 18:31:40 +00:00
markiantorno 1d7e8bf63d Updating version to: 5.4.8-SNAPSHOT and incrementing test cases dependency. 2021-07-05 17:01:20 +00:00
markiantorno c1adf78ed9 Release: v5.4.7
* Releasing to bring latest release up to Grahame's latest changes.
***NO_CI***
2021-07-05 16:01:31 +00:00
markiantorno 887365e778 Updating version to: 5.4.7-SNAPSHOT and incrementing test cases dependency. 2021-06-24 19:44:46 +00:00
markiantorno aa0b7bc056 Release: v5.4.6
Validator:
* Fix problem importing x-version extensions with multiple targets
* fix bug validating profiles on bundle.entry.resource
* Fix loading issues with German translations (Unicode encoding problem)

Version Conversion:

* Round trip old questionnaires properly with R5 (item.type)

Other code changes:

* Fix up questionnaire rendering for old versions
* Add support for using https:// references to HL7 website
* Add support for using https:// references to HL7 website
* Add support for R4B to context
* update pubpack to v0.0.9
***NO_CI***
2021-06-24 19:18:37 +00:00
Grahame Grieve d07da31206
Merge pull request #543 from ItayGoren/abatament-condition
fix condition abatament bool
2021-06-25 04:30:42 +10:00
Grahame Grieve 8aa77b97cd Fix up Questionnaire rendering/conversion problem for R5 2021-06-24 21:44:13 +10:00
Itay Goren 73925c451b fix condition abatament bool 2021-06-23 12:59:19 +03:00
Mark Iantorno 87066f1c4c
Static method convertor (#541)
* pulled it all apart

* pulled apart all the 40_50 components for poc

* wip
2021-06-22 20:29:48 -04:00
markiantorno e68b5857b1 Updating version to: 5.4.6-SNAPSHOT and incrementing test cases dependency. 2021-06-17 22:28:48 +00:00