Commit Graph

1384 Commits

Author SHA1 Message Date
dotasek 463b37887b Use fhir-test-cases release 2024-06-06 17:28:59 -04:00
dotasek 5f01298e2f Try deploying javadoc with SNAPSHOT 2024-06-05 16:51:49 -04:00
Grahame Grieve 2f38cb544c Refactor how observation profiles are registered in order to generalise management of extra profiles 2024-06-01 22:54:17 +10:00
markiantorno a32e28e4e3 Updating version to: 6.3.11-SNAPSHOT and incrementing test cases dependency. 2024-05-25 23:37:56 +00:00
markiantorno d8781b8b76 Release: v6.3.10
## Validator Changes

* Fix issue validating codes with + in them
* Fix (well, hack) R4 vital signs issue with component units

## WHO I18n Project

* QA on i18n constants - remove spurious entries, add anything missing
* Remove test case for i18n coverage
* Generate properties translation files without blank entries
* Add transifex configuration
* Fix up .po file generation so that POEdit is supported, and remove duplicate constants (#1592)
* Most strings translated to Dutch, unchecked.
* Add utility to infer locale from region code

## Other code changes

* Remove Accept-Charset header
* Fix typos around CODESYSTEM_CONTENT_COMPLETE
***NO_CI***
2024-05-25 22:53:24 +00:00
Grahame Grieve ff88c4a91f release 2024-05-25 17:08:19 -05:00
Grahame Grieve dd608c5708 update pom 2024-05-22 08:35:08 -05:00
markiantorno 0d0687f1f1 Updating version to: 6.3.10-SNAPSHOT and incrementing test cases dependency. 2024-05-22 05:52:30 +00:00
markiantorno c47f248fa4 Release: v6.3.9
## Validator Changes

* remove "LOINC 2711-0 Oxygen saturation in Venous blood" from the list in the validator that checks whether an observation is a vital sign

## WHO I18n Project

* fix value set summary line display
* update the source of truth translation files

## Other code changes

* Handle more than one expectation extensions in CapabilityStatement
* Fix NPEs in Liquid renderer
***NO_CI***
2024-05-22 05:02:20 +00:00
Grahame Grieve bb3a98cd21 set up release 2024-05-21 23:29:08 -05:00
Grahame Grieve 518e9da333 test cases dependency 2024-05-20 08:45:00 -05:00
markiantorno 1f6aaa1db3 Updating version to: 6.3.9-SNAPSHOT and incrementing test cases dependency. 2024-05-20 13:16:27 +00:00
markiantorno 5165942802 Release: v6.3.8
## Validator Changes

* Fix bug processing extension with explicit type slicing
* Fix wrong language code from java locale
* Don't accidently hit other terminology servers for code systems handled natively by tx.fhir.org
* Validate Additional Bindings (provisional - usage context is todo)
* Improved system specific checking of value set filters - particularly LOINC and SNOMED CT, and update LOINC validation to the latest understanding of LOINC filters

## WHO I18n Project

* Add importing translations to native resources
* Finish Migrating text phrases to i18n framework
* Fix bugs with loading translations (#1592)

## Security

* Move all network access to go through ManagedWebAccess
* More security documentation

## Other code changes

* Put jurisdiction in npm package.json
* Add testing ontoserver to test suite
* Fix NPE testing Ontoserver
* fix tx tester calling run ok when a filter is applied and tests fail
* Fix name of preferred when rendering AdditionalBindings
* Add AdditionalBinding version conversion in profiles
* Fix SNOWMED spelling
* Fix rendering of multiple imports in value sets
***NO_CI***
2024-05-20 12:30:29 +00:00
Mark Iantorno a3da8d8afa Updating test case dependency to v1.5.8
***NO_CI***
2024-05-20 11:48:33 +00:00
Grahame Grieve 1e3bc60d6e Fix up translation issues 2024-05-12 23:24:20 +10:00
markiantorno 248b8b1ac8 Updating version to: 6.3.8-SNAPSHOT and incrementing test cases dependency. 2024-05-10 05:02:38 +00:00
markiantorno d81fc5d82d Release: v6.3.7
## Validator Changes

* Fix bug where some #refs are not resolved to the root of the resource in FHIRPath slicing evaluation
* Fix bug passing wrong type to tx server when using inferSystem
* Fix bug processing version of CodeSystem.supplements incorrectly
* Don't process wrong parent when processing snapshot of element with profiled type that is not reprofiled
* Fix typo in OID message
* Fix handling value set exclude filters
* Allow code system declared properties to be self-referential

## I18n changes

* More comprehensive internationalization phrase coverage reporting on project page
* Move many rendering phrases into i18n framework

## Rendering Changes

* Fix issue with unknown element rendering fixed value for Attachment
* Fix bug calculating value set expansion size for multiple imports
* Fix bug using wrong message for value sets that are too costly to expand
* Fix extension urls not being linked in tree view
* rendering improvements and remove static use of describeSystem
* Fix NPE rendering profile comparisons
* Fix bug where slicing and grouping gets mixed up rendering profile tree

## Other code changes

* Wrap general exception for IWorkerContext (Catch missed exception from HAPI)
* Shim interfaces and classes to support clinical reasoning project updates.
* Fix duplicate txServer getters and setters
* Use extension class on Exception to force try-catch blocks on checkCodeOnServer calls (#1609)
* rework OID handling for better consistency
* handle time outs doing vsac import (starlink obstructions)
***NO_CI***
2024-05-10 04:18:38 +00:00
Grahame Grieve 3a1740f767 set up release 2024-05-10 10:02:23 +10:00
Grahame Grieve 698ba562ab update test case version 2024-05-08 12:06:47 +10:00
markiantorno 9ce2c57b8b Updating version to: 6.3.7-SNAPSHOT and incrementing test cases dependency. 2024-04-23 08:51:21 +00:00
markiantorno 46bdec9054 Release: v6.3.6
## Validator Changes

* fix NPE loading resources
* Don't enforce ids on elements when processing CDA
* Send supplements to tx server
* fix bug processing code bindings when value sets are complex (multiple filters)
* fix spelling of heirarchy
* Look up CodeSystem from terminology server
* Don't use tx-registry when manual terminology server is set

## Other code changes

* More work on WHO language support ($1592)
* allow validation message to have count
* render versions in profile links when necessary
* rework OID handling for better OID -> CodeSystem resolution
* fix up vsac importer for changes to client
* don't send xhtml for tx operations
* FHIRPath: Backport the defineVariable code to the R4 and R4B fhirpath implementations
* FHIRPath: Remove the alias/aliasAs custom functions (use standard defineVariable now)
* Bump lombok (#1603)
***NO_CI***
2024-04-23 08:03:57 +00:00
Grahame Grieve 7f3a195680 set up relase 2024-04-23 16:39:28 +10:00
Grahame Grieve 5134aa187c Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-04-21 21:57:05 +10:00
Grahame Grieve 84d0b13b2f re-Add support for $lookup and $translate in tx tests 2024-04-20 23:37:29 +10:00
dotasek 0d20288f36
Bump lombok (#1603) 2024-04-17 09:38:38 -04:00
markiantorno ed18ec2cc6 Updating version to: 6.3.6-SNAPSHOT and incrementing test cases dependency. 2024-04-16 22:47:50 +00:00
markiantorno ccf66ece0b Release: v6.3.5
## Validator Changes

* Fix up path management in the validator for resolving references in Bundles
* Add support for defineVariable in FHIRPath
* Fix problem with CDA element having multiple types
* Fix problem with 'is' not working in FHIRPath for CDA types
* Fix issue processing CDA generic type names
* Fix for NPE processing tx server response
* Add support for code system supplements when communicating with tx server

## Other code changes

* OSGI: make sure JUnit 4 and 5 dependencies are optional (#1596) (Also removed duplicate managed versions of JUnit 4.13.2 and mockwebserver 4.11.0)
* Render CapabilityStatement.imports (and instantiates)
* Terminology Service Tests - minor improvements for running in HAPI, add $lookup & $translate support, create R4 clone
* Add support for $translate to terminology client
* More i18n work in rendering context (WHO project)
* Add isServerSide for seeing if code systems are only supported on the server
* Fix R4B loading issue that lead to wrong web paths for R4B resources
* Fix problems rendering Binary files in IGs
* Add support for rendering logical URIs
* Remove path.toFile()

## Security

* Finish moving all local file access to go through ManagedFileAccess

## WHO Internationalization work

* More work on date rendering
***NO_CI***
2024-04-16 22:01:50 +00:00
Grahame Grieve 0b6eab0924 set up release 2024-04-17 07:18:02 +10:00
dotasek 461df3031b
Bump jackson-databind (#1600)
* Bump jackson-databind

* Update license whitelist
2024-04-16 13:24:08 -04:00
dotasek bab36025db
Bump nimbus-jose-jwt (#1599) 2024-04-16 11:29:28 -04:00
Grahame Grieve df93da2735 update tests to depend on snapshot 2024-04-10 08:19:15 +10:00
markiantorno 1f3d2838d9 Updating version to: 6.3.5-SNAPSHOT and incrementing test cases dependency. 2024-04-04 01:47:30 +00:00
markiantorno 45e8d86478 Release: v6.3.4
## Validator Changes

* Validate fixed/pattern values are not changed in derived profiles
* Fix NPE validating some profiles
* FHIRPath validation: consider sub-extensions when checking extension($) use
* Fix validation of concept maps containing SCT
* Preserve message id from terminology service so editors can use it to remove hints and warnings

## Other code changes

* Fix ConceptMap.group.target conversion from R3 to R5
* Fix NPE in list renderer
* fix bug showing 'required' instead of 'current' rendering additional bindings
* Fix bad references generating narratives in bundles
* Fix bug showing extension binding twice
* Various improvements to structure map validation to support cross-version mappings
* Add rendering for UsageContext and ContactDetail
* Fix broken link in xver IG for R2
* Fix bug rendering resources in Parameters resource
* Not-pretty xhtml gets line breaks before block tags to keep line length down (work around a jekyll issue)
* Improved ConceptMap rendering for cross-version IG
* Handle xhtml:div type for old FHIR version
* FML: strip '-' from rules names when parsing
* Update FML parsers to accept R5 metadata in R4 FML format
* Break out helper classes for Terminology Service Tester

## Security

* Add start of security notes
* Start moving file access to all go through ManagedFileAccess

## WHO Internationalization work:

* Add library to parse IETF Language definitions
* Move message translations to .po files as the master source & write convertor
* Much work making rendering i18n-able
* i18n for Patient renderer
* Refactor language handling in R5 renderers
***NO_CI***
2024-04-04 00:55:36 +00:00
Grahame Grieve fcd4a9f202 set up release 2024-04-04 11:14:10 +11:00
Grahame Grieve 02b6e80b6d refactor language handling in R5 renderers 2024-03-22 22:49:31 +11:00
markiantorno 0cebf9af9f Updating version to: 6.3.4-SNAPSHOT and incrementing test cases dependency. 2024-03-20 13:31:17 +00:00
markiantorno ec51399045 Release: v6.3.3
## Validator Changes

* Fix grammar in validation messages
* Fix NPE in validator for SIDs
* Duplicate designations in a code system is a warning, not an error
* Fix value set validation to validate codes in example code systems

## Other code changes

* Improved multi-language support for IG development (LanguageUtils)
***NO_CI***
2024-03-20 12:38:29 +00:00
Grahame Grieve b2fefc75e5 set up release 2024-03-20 22:52:09 +11:00
Grahame Grieve 4f1269dcff update test cases dependencies 2024-03-20 21:01:18 +11:00
markiantorno b2e3c261e4 Updating version to: 6.3.3-SNAPSHOT and incrementing test cases dependency. 2024-03-18 15:09:50 +00:00
markiantorno 5b5a0a2cdf Release: v6.3.2
## Validator Changes

* CodeSystem property validation improvements
* More valueset validation improvements after real world testing
* Fix processing of NotSelectable filters using in | not-in
* Fix wrong collection type checking FHIRPath subsetOf parameter type

## Other code changes

* Fix rendering of contained resources in Kindling
* Put jurisdiction in NPM package file
* Rendering improvements for xver IG
* More xver support for concept maps
* Fix NPE in ContextUtilities (kindling)
* Add OID Assigner utility
***NO_CI***
2024-03-18 14:24:12 +00:00
Grahame Grieve 8af7859393 add release notes 2024-03-18 20:13:53 +11:00
dotasek 25267b6096
Bump commons-compress to 1.26.0 (#1570) 2024-03-15 10:25:28 -04:00
Grahame Grieve a058d0ee4d upgrade test case dependency 2024-03-14 16:49:18 +11:00
markiantorno da3bb9e353 Updating version to: 6.3.2-SNAPSHOT and incrementing test cases dependency. 2024-03-10 21:41:17 +00:00
markiantorno 072be957d4 Release: v6.3.1
## Validator Changes

* Add validation for CodeSystem Properties and ValueSet filters
* More validation for Code Systems: contained code systems, supplement cross checks
* Add more validation around ValueSet.compose.include.system - must be a proper URL, and not a direct reference to a supplement
* HL7: Don't require HL7 publishing status on contained resources
* Don't walk into nested bundles when validating links in bundles
* fix up implementation of notSelectable in value set filters
* Add check for multiple version matches for a versionless canonical reference

## Other code changes

* Fix narrative generator generating duplicate anchors (prefix 'hc')
* exclude .DS_Store from generated zip files
* Add cross-version support extension
* Add ConceptMap utilities in support of cross-version module
***NO_CI***
2024-03-10 20:52:29 +00:00
Grahame Grieve a20704de16 update test case dependency for release 2024-03-11 07:01:40 +11:00
Grahame Grieve 7ba1511748 Fix bug where some XHTML elements wrongly serialised concisely 2024-03-01 16:41:32 +11:00
markiantorno 48023c0ba4 Updating version to: 6.3.1-SNAPSHOT and incrementing test cases dependency. 2024-02-28 05:56:31 +00:00
markiantorno b44c34c7e2 Release: v6.3.0
## Validator Changes

* Fix significant bug where validator gets internal child lists incorrect and doesn't do complete validation when switching between validating profiles and resources directly
* Performance improvement for validator parsing - thanks Brian Postlethwaite
* Fix Crash on slicing a sliced element #862
* Fix ig loading from direct URL (#1559)
* Fix bug copying constraints into Bundle.entry.resource profiles
* Fix bug loading R5 extensions with imported value sets
* Replace dom-3 with custom java code, and check xhtml references to contained content
* Improve concept map code validation
* Update observation validator for committee decision not to enforce Blood Pressure profile for Mean Blood Pressure
* Validate value set internal codeSystem references
* Split value set validation into 10k batches for very large extensional value sets
* Hack fix for opd-3
* Fix bug where using ontoserver when not appropriate
* Fix issues with inferSystem
* Don't require HL7 committee for contained resources in HL7 namespace
* Fix where validator was ignoring minimum cardinality for XML attributes (especially in CDA)
* Improved ConceptMap validation
* Updated IG versions used for -cda and -ccda CLI validation options.
* Change validator so that it marks value properties in primitive data types as illegal

## Other code changes

* Fix code system rendering for uri properties
* Fix broken links Bundle and Profile rendering
* Take copy of code when doing local validation
* WIP: major refactor of cross version analysis
* Add support for subsumes in tx client
* Don't generate snapshots when scanning structure definitions for resource names
* Work on ConceptMap infrastructure for cross-version analysis
* Fix bug where not rendering ConceptMap relationships
* Fix wrong URLs rendering Profiles and Questionnaires
* Fix bug using wrong version constant for R3
* Updates for R5 StructureMap syntax
* Support for case sensitive Code system tests
* Add TurtleGeneratorTests for R5
* Introduce new validator cliContext option disableDefaultResourceFetcher (#1526)
* Render contained resources when rendering Patient resources
* Fix bug in FML Parser
***NO_CI***
2024-02-28 05:04:13 +00:00