Commit Graph

2650 Commits

Author SHA1 Message Date
Grahame Grieve 4727bc57ff Fix up support for inactive codes and fix error message syntax 2023-08-04 18:44:40 +10:00
Grahame Grieve f1571ea2b4 Do not supercede R4 terminology when loading R5 IGs 2023-08-04 18:42:40 +10:00
Grahame Grieve e0b9a6dcc7 migrate type support when generating differentials 2023-08-04 18:42:18 +10:00
Grahame Grieve 7da1e419e9 remove unwanted debugging statements 2023-08-04 11:57:18 +10:00
Grahame Grieve c069538d2e what happened to that code? 2023-08-04 11:54:18 +10:00
Grahame Grieve ad08255740 Merge remote-tracking branch 'origin/master' 2023-08-04 11:49:19 +10:00
Grahame Grieve 45b5631e62 Fix issue with collection status of resolve() being wrong 2023-08-04 11:47:44 +10:00
Grahame Grieve 8cc698af5d Improved paths in profile error messages, and fix problem with extension slicing being missed sometimes. 2023-08-04 11:47:08 +10:00
dotasek f835c7efe4 Only trim whitespace outside of the json 2023-08-03 16:38:42 -04:00
Grahame Grieve 6d0883468b
2023 08 gg extension paths (#1380)
* fix problem with whitespace in terminology caching

* Support for x-version extensions when generating snapshots

* Fix problem with evaluating extension contexts

* Produce useful error message when whitespace is wrong in display name

* Resolve URL for x-version extensions

* render inactive property in expansions

* fix tests

* ping build

* Point to correct test-cases version

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-08-03 16:12:48 -04:00
Grahame Grieve b668f4a04a fix tests 2023-08-03 21:33:57 +10:00
Grahame Grieve dfc8a006e2 render inactive property in expansions 2023-08-03 20:29:22 +10:00
Grahame Grieve ecefe55cd5 Resolve URL for x-version extensions 2023-08-03 20:29:00 +10:00
Grahame Grieve 3a5dffa4a7 Produce useful error message when whitespace is wrong in display name 2023-08-03 20:28:42 +10:00
Grahame Grieve df4432b49d Fix problem with evaluating extension contexts 2023-08-03 20:28:04 +10:00
Grahame Grieve 09b6fda419 Support for x-version extensions when generating snapshots 2023-08-03 20:27:20 +10:00
Grahame Grieve 24d67798d6 fix problem with whitespace in terminology caching 2023-08-03 20:26:57 +10:00
markiantorno 011167a218 Updating version to: 6.0.25-SNAPSHOT and incrementing test cases dependency. 2023-08-02 23:28:12 +00:00
markiantorno 42274a7bd3 Release: v6.0.24
## Validator Changes

* Create warnings for status on terminology resources
* Don't load resources from core examples package

## Other code changes

* fix up copy directory for case differences
***NO_CI***
2023-08-02 23:02:37 +00:00
Grahame Grieve b23e31d44c fix narrative rendering 2023-08-02 22:53:57 +10:00
Grahame Grieve 42aef4ad40 fix for npe 2023-08-02 21:38:01 +10:00
Grahame Grieve 32f2f6acc7 warnings for status on terminology resources 2023-08-02 18:12:02 +10:00
Grahame Grieve d314a927af FIx up problem resolving URLs 2023-07-31 14:38:09 +10:00
Grahame Grieve be8276bd4a Add rendering for UsageContext 2023-07-31 14:37:51 +10:00
Grahame Grieve b42c908328 More improved FHIRPath checking when validating 2023-07-31 14:37:41 +10:00
Grahame Grieve bd3d718256 Update obligation handling code for split definitions 2023-07-29 08:48:54 +10:00
markiantorno 0165495626 Updating version to: 6.0.24-SNAPSHOT and incrementing test cases dependency. 2023-07-27 14:23:16 +00:00
markiantorno db5d2b07c3 Release: v6.0.23
## Validator Changes

* Update IPS versions for -ips parameter (and get it working again)
* fix up validation of constraints in differentials (wasn't always happening)
* add warnings when collection status isn't right
* Better information messages when CodeSystem.content = not-present
* Add character check in validator for illegal XML Unicode characters
* Fix path problem in NpmPackage (some simplifier packages couldn't be processed)
* Fix NPE validating codes in value sets with improper expansions

## Other code changes

* Add support for Liquid assign
* Switch to DateTime type for Android Support
* Code clean up: remove unused imports
* Fix JSON unicode encoding handling of chars <32 code points
***NO_CI***
2023-07-27 13:56:32 +00:00
Grahame Grieve 06c865badf Fix NPE validating codes in value sets with improper expansions 2023-07-27 17:50:42 +10:00
Grahame Grieve 4eff9a3b68 fix up validation of FHIRPaths in differentials, and add warnings when collection status isn't right 2023-07-27 17:49:57 +10:00
Grahame Grieve a3c32d86a0 add support for Liquid assign + Fix JSON unicode encoding and add character check in validator for illegal XML Unicode characters 2023-07-26 12:32:51 +10:00
Grahame Grieve fefd1ad1d6 fix -ips parameter and add -check-ips-codes parameter 2023-07-26 00:59:02 +10:00
markiantorno 592fba54cc Updating version to: 6.0.23-SNAPSHOT and incrementing test cases dependency. 2023-07-22 17:06:10 +00:00
markiantorno b7fd3be910 Release: v6.0.22
## Validator Changes

* Add support for private NPM registries requiring authentication
* Don't check FHIRPaths on differentials - not enough type info to test reliably
* Fix bugs in FHIRPath handling of logical models
* Fix minor bugs in type handling for Logical Models and R3 Profile validation
* Remove spurious warning message validating CDA documents
* Add value set qa checking
* Fixes to validator for new CDA package (proper handling of logical model types)
* Fix up bi-di warning message
* Add provisional support for alternate codes
* Workaround ClinicalImpression definition problem in core spec
* Fix to get context variables right when running invariants + fix for parent not always being populated + check type in derived profiles
* Fix checking FHIRPath statements on inner elements of type slices
* Fix scan of naming systems (error validating namespaces)
* Fix issue checking invariant expressions in R5

## Other code changes

* FHIRPath in HAPI mode: Strip returned IIdType of qualifier, version, and resourceType
* Update R4 and R4B FHIRPath implementations for changes picked up in R5 usage
* Fix obligation rendering message
* Fix missing extensions when converting value set properties
* Fix type of x-unknown-code-system in $validate-code response
* Fix CDA validation test case
* Much work on TxServer test case framework + Update terminology server implementation and tests for changes to test cases
* OMOP Vocabulary and ICFImporter development
* Add OWASP dependency check (#1347), upgrade many packages, remove ShEx
* Add github action to upload results
* Remove unused javalin dependency, also generate html reports
* Added test case for ExampleScenario conversion (R4/R5) and significantly bulked up the conversion process
* Remove unneeded resources (#1346) (help16.png)
* Add test for setVsAsUrl parameter setting (#1345)
***NO_CI***
2023-07-22 16:41:19 +00:00
dotasek 2654e85df3
Implement private NPM server (#1337)
* WIP start adding NPM data.

* WIP 2 Testing against verdaccio npm

* WIP private npm package servers

* WIP2 add server type config

* WIP3 parse tarball url

* Fix package date parsing, start mocking server tests

* Add dummy package, assert authorization and content

* Add more tests

* Add serverType to settings test

* Ignore tgz files for bidi check

* tighter bidi ignore

* different ignore regex

* Make packageManagement settings, allow ignoring default package servers

* New tests + token authentication

* Manage 404s when configured servers don't have package
2023-07-22 11:01:36 -04:00
dotasek b62f9afc5a
Remove resourceType, version, and qualifier from FHIRPath id results (#1357)
* Breaking test

* Strip returned IIdType of qualifier, version, and resourceType

* Add fix to r4b

* Add fix to r5
2023-07-22 11:01:13 -04:00
Grahame Grieve bb4379f5dd fix bugs in type handling 2023-07-22 21:01:08 +10:00
Grahame Grieve 363045c1c8 Fix bugs in FHIRPath handling of logical models 2023-07-22 08:18:55 +10:00
Grahame Grieve 5a858949d4 Merge remote-tracking branch 'origin/master' 2023-07-21 21:18:42 +10:00
Grahame Grieve e324047735 Fix issue with type evaluation in R3 checking FHIRPath types 2023-07-21 21:16:48 +10:00
Grahame Grieve 4e8f0f0c0c
Merge pull request #1353 from hapifhir/2023-07-gg-context-fixes
2023 07 gg context fixes
2023-07-21 14:48:19 +10:00
Grahame Grieve d8e2e020af fix failing tests 2023-07-21 12:41:56 +10:00
Grahame Grieve cf1b53bba0 Update terminology server implementation and tests for changes to test cases 2023-07-21 05:38:09 +10:00
Grahame Grieve f52df7c0cc Fix obligation rendering message 2023-07-20 08:21:51 +10:00
Grahame Grieve 616cf5fdb3 Add provisional support for alternate codes 2023-07-20 08:21:19 +10:00
Grahame Grieve 274c49bde5 Workaround ClinicalImpression definition problem in core spec 2023-07-20 08:20:18 +10:00
dotasek 2f11af9bfa
Return HumanName getText() preferentially in getNameAsSingleString (#1355)
* Failing tests

* Return getText if it exists in HumanName
2023-07-18 12:22:53 -04:00
Grahame Grieve 3f67cbee9e Merge remote-tracking branch 'origin/master' 2023-07-18 11:12:10 +10:00
Grahame Grieve 8c0539136c suppress spurious error message 2023-07-18 11:08:09 +10:00
Grahame Grieve 55c12301ba remove shex 2023-07-18 11:06:06 +10:00